Query psy9009
Match_columns 258
No_of_seqs 150 out of 245
Neff 2.5
Searched_HMMs 46136
Date Sat Aug 17 01:26:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2.5E-60 5.4E-65 471.4 7.6 173 2-176 486-680 (758)
2 PLN03244 alpha-amylase; Provis 100.0 1E-52 2.2E-57 420.5 7.5 167 2-176 626-815 (872)
3 KOG0470|consensus 100.0 6.1E-52 1.3E-56 410.5 8.0 173 2-176 504-702 (757)
4 PLN02960 alpha-amylase 100.0 7.7E-33 1.7E-37 279.5 8.4 167 2-176 651-840 (897)
5 PRK14706 glycogen branching en 99.4 2.5E-13 5.3E-18 133.6 4.0 130 16-176 411-573 (639)
6 TIGR01515 branching_enzym alph 99.0 1E-09 2.2E-14 106.9 6.4 129 17-176 404-565 (613)
7 PRK14705 glycogen branching en 98.9 9.8E-10 2.1E-14 115.8 5.2 143 3-176 1000-1173(1224)
8 PRK12313 glycogen branching en 98.8 5.1E-09 1.1E-13 101.9 6.0 129 17-176 417-578 (633)
9 PRK05402 glycogen branching en 98.6 6.4E-08 1.4E-12 96.1 6.1 129 18-176 514-674 (726)
10 PRK12568 glycogen branching en 98.5 7.1E-08 1.5E-12 97.6 4.8 142 4-176 505-679 (730)
11 COG0296 GlgB 1,4-alpha-glucan 97.8 1.7E-05 3.7E-10 79.8 3.2 154 3-179 399-581 (628)
12 TIGR02402 trehalose_TreZ malto 71.6 7.1 0.00015 38.6 5.1 107 20-149 365-503 (542)
13 COG0296 GlgB 1,4-alpha-glucan 64.5 2.2 4.9E-05 43.8 0.1 44 104-148 472-518 (628)
14 PF12359 DUF3645: Protein of u 57.5 4.5 9.7E-05 27.8 0.6 8 90-97 21-28 (34)
15 TIGR02100 glgX_debranch glycog 51.8 20 0.00043 36.9 4.3 73 68-151 500-577 (688)
16 TIGR02104 pulA_typeI pullulana 50.6 22 0.00047 35.5 4.3 69 70-149 462-535 (605)
17 PRK03705 glycogen debranching 47.4 14 0.00031 37.9 2.5 64 76-152 502-570 (658)
18 PF11426 Tn7_TnsC_Int: Tn7 tra 36.4 9.9 0.00021 27.5 -0.4 21 114-134 3-23 (48)
19 PF02806 Alpha-amylase_C: Alph 36.1 21 0.00046 26.2 1.3 21 157-177 31-51 (95)
20 PRK14510 putative bifunctional 29.4 88 0.0019 34.6 5.1 68 70-150 504-576 (1221)
21 PRK06764 hypothetical protein; 28.6 29 0.00063 28.7 1.1 23 162-185 73-95 (105)
22 PLN02877 alpha-amylase/limit d 25.9 32 0.0007 37.4 1.1 26 200-225 899-924 (970)
23 PF00128 Alpha-amylase: Alpha 23.3 1.3E+02 0.0028 25.0 4.0 52 19-96 260-311 (316)
24 PF06865 DUF1255: Protein of u 22.3 50 0.0011 26.8 1.3 24 164-187 24-47 (94)
25 COG3123 Uncharacterized protei 21.6 70 0.0015 26.3 2.0 37 153-189 9-49 (94)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.5e-60 Score=471.40 Aligned_cols=173 Identities=28% Similarity=0.455 Sum_probs=166.2
Q ss_pred CCcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHH-HHHHhhhhhhc
Q psy9009 2 GGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEEST-FYINNIFPIAT 80 (258)
Q Consensus 2 ~~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~-~KmirLiT~a~ 80 (258)
.+|+|++|+++|+||||.||+|+|+|||||++| |++||||||||+|||++|+.+++.+.+++|+++ ||||||+|+++
T Consensus 486 ~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~--Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~ 563 (758)
T PLN02447 486 EDWSMGDIVHTLTNRRYTEKCVAYAESHDQALV--GDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMAL 563 (758)
T ss_pred cccCHHHHHHHHhcccccCceEeccCCcCeeec--CcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999998 777999999999999999999999999997755 99999999999
Q ss_pred CCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------C
Q psy9009 81 APFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------E 153 (258)
Q Consensus 81 gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------e 153 (258)
+|+||||||||||||||||||||+||+|||+||||||+|+|++.|+|++|++|| +||+|++++++|.++..+ +
T Consensus 564 pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~ 643 (758)
T PLN02447 564 GGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEG 643 (758)
T ss_pred CCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999988777 6
Q ss_pred Ccc--------------ccCCccccccccccCCceee
Q psy9009 154 TQD--------------FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 154 dKV--------------hp~kSy~dYrvgv~~pGkY~ 176 (258)
+|| ||++||+||||||..||+|+
T Consensus 644 ~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~ 680 (758)
T PLN02447 644 DKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYK 680 (758)
T ss_pred CCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEE
Confidence 676 99999999999999999998
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=1e-52 Score=420.54 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=156.0
Q ss_pred CCcccccceecc-cccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchh-HHHHHHhhhhhh
Q psy9009 2 GGWHNTDFKSSL-TNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEE-STFYINNIFPIA 79 (258)
Q Consensus 2 ~~W~m~dI~~tL-tNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~-~~~KmirLiT~a 79 (258)
..|+|+.|+++| +|||+.|++|+|+|||||++| |++||+|||||++||.+|+ .+.+++|+ ++||||||+|++
T Consensus 626 erw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLv--GdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aLhKMiRllt~~ 699 (872)
T PLN03244 626 HEWSMSKIVSTLIANKEYADKMLSYAENHNQSIS--GGRSFAEILFGAIDEDPLG----GKELLDRGCSLHKMIRLITFT 699 (872)
T ss_pred cccCHHHHhhhhhcccCCcceEEEEecccceecc--ccchHHhhhcccccccccc----cchhhhhhhHHHHHHHHHHHH
Confidence 359999999999 999999999999999999998 8889999999999999993 45566654 569999999999
Q ss_pred cCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------
Q psy9009 80 TAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------ 152 (258)
Q Consensus 80 ~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------ 152 (258)
++|++||||||||||||||+||||+||++||+||||||+|+|++. |++|++|| +||+|.+++++|.++.++
T Consensus 700 ~~G~kkLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~--hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~ 777 (872)
T PLN03244 700 IGGHAYLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEV--HHHLFSFDKDLMDLDENEGILSRGLPNIHHVKD 777 (872)
T ss_pred ccCccceeecccccCCchheeccccCCCccccccccCccccCChh--HHHHHHHHHHHHHHHhcCcccccCCcEEeeecC
Confidence 999999999999999999999999999999999999999999885 99999999 999999999999988876
Q ss_pred CCcc--------------ccCCccccccccccCCceee
Q psy9009 153 ETQD--------------FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 edKV--------------hp~kSy~dYrvgv~~pGkY~ 176 (258)
++|| ||++||+||+|||..||+|+
T Consensus 778 e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~ 815 (872)
T PLN03244 778 AAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQ 815 (872)
T ss_pred CCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEE
Confidence 6676 99999999999999999998
No 3
>KOG0470|consensus
Probab=100.00 E-value=6.1e-52 Score=410.46 Aligned_cols=173 Identities=25% Similarity=0.376 Sum_probs=166.9
Q ss_pred CCcccccceecccccccccceeeeeecccccccccch-hhHHH-HhcChhhhcccccCCCCCcccchhHH-HHHHhhhhh
Q psy9009 2 GGWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGI-FLFLL-RLLDPEINRFKNTDLDFSQLFTEEST-FYINNIFPI 78 (258)
Q Consensus 2 ~~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd-~T~af-~LMd~eMY~~Msv~~~~s~~id~~~~-~KmirLiT~ 78 (258)
.+|.||+|.++||||||+||+|+|||+|||++| || +||+| ||||+.||..|++..|.+++|+|+++ ||||||||+
T Consensus 504 ~~~~~gs~~~~ltN~R~~e~~v~y~~~HDq~~v--~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~ 581 (757)
T KOG0470|consen 504 AEWIMGSIDYTLTNRRYPEKSVNYAESHDQALV--GDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITL 581 (757)
T ss_pred hheeccCcceeeeccccccceeeeeeccCCccc--cceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999998 77 89999 99999999999999999999998877 999999999
Q ss_pred hcCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhc-cccccCCCCCCc-ccccCCh-hHHhhHhhcccCCCCCCC---
Q psy9009 79 ATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARR-QWNLTDDELLKY-KFLNSNE-TPATLDNTVVCLSPDGRE--- 152 (258)
Q Consensus 79 a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARR-QW~L~Dd~~LrY-k~L~~FD-aM~~le~~~~~L~~~~~y--- 152 (258)
++||++||||||||||||||+||||.|||.||+|||| ||+|+|.+.+|| +.|++|| +|+.|++.++|+++..++
T Consensus 582 ~lg~g~pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~ 661 (757)
T KOG0470|consen 582 GLGGGAPLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISL 661 (757)
T ss_pred hccCccceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999999999 999999999999 9999999 999999999999999988
Q ss_pred ---CCcc--------------ccCCccccccccccCCceee
Q psy9009 153 ---ETQD--------------FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 ---edKV--------------hp~kSy~dYrvgv~~pGkY~ 176 (258)
.|++ ||++||.||+||++.||+|+
T Consensus 662 k~e~~~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~ 702 (757)
T KOG0470|consen 662 KHEADEVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYT 702 (757)
T ss_pred cchhhheeeeccCCeEEEEEecCCCCCceeEEEecCCCceE
Confidence 3443 99999999999999999999
No 4
>PLN02960 alpha-amylase
Probab=99.97 E-value=7.7e-33 Score=279.51 Aligned_cols=167 Identities=24% Similarity=0.325 Sum_probs=150.9
Q ss_pred CCcccccceeccc-ccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchh-HHHHHHhhhhhh
Q psy9009 2 GGWHNTDFKSSLT-NRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEE-STFYINNIFPIA 79 (258)
Q Consensus 2 ~~W~m~dI~~tLt-NRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~-~~~KmirLiT~a 79 (258)
++|+|..|.++++ ||+.+|+.|+|+|||||.++ |.++++.+|++.+++.+|++ ++.+.|+ ++|+|+||+|++
T Consensus 651 r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~--Gkrsl~~rL~g~~~~k~~~~----~~~~lRa~al~~~~rllt~~ 724 (897)
T PLN02960 651 QEWSMSKIVSTLVKNKENADKMLSYAENHNQSIS--GGKSFAEILLGKNKESSPAV----KELLLRGVSLHKMIRLITFT 724 (897)
T ss_pred CCCChhccEeeeccCcCCcceEEEEecCcCcccc--CcccHHHHCCCchhhhhccc----ChhhhhhhhHHHHHHHHHHH
Confidence 5799999999999 99999999999999999998 66699999999999999988 3345555 569999999999
Q ss_pred cCCCceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC------
Q psy9009 80 TAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE------ 152 (258)
Q Consensus 80 ~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y------ 152 (258)
++|+.+|+|||||||||||.|||+++|++||++|++||+|+|++ .++.|.+|+ +||+|.++...|.+....
T Consensus 725 ~~Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~--~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~ 802 (897)
T PLN02960 725 LGGSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDG--VHAHLFSFDKALMALDEKYLILSRGLPNIHHVND 802 (897)
T ss_pred hCCCCCEeeCccccCChhhhhCcCCCCccccccccCCcccccCh--hHHHHHHHHHHHHHHHhcChhhcCCcceeeeecC
Confidence 99999999999999999999999999999999999999999987 499999999 999999999999766544
Q ss_pred CCcc--------------ccCCccccccccccCCceee
Q psy9009 153 ETQD--------------FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 edKV--------------hp~kSy~dYrvgv~~pGkY~ 176 (258)
+++| +|..++.+|+|||..+|+|+
T Consensus 803 ~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgvP~~G~y~ 840 (897)
T PLN02960 803 TSMVISFTRGPLLFAFNFHPTNSYEEYEVGVEEAGEYE 840 (897)
T ss_pred CCCEEEEEeCCeEEEEeCCCCCcCcCceECCCCCCcEE
Confidence 3344 88889999999999999998
No 5
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.37 E-value=2.5e-13 Score=133.63 Aligned_cols=130 Identities=14% Similarity=0.076 Sum_probs=89.0
Q ss_pred cccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC
Q psy9009 16 RSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH 95 (258)
Q Consensus 16 RR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH 95 (258)
.++.|+.| |.+|||++..|+ ++++.. | +-+. -...+..|+.-.+++ +..+..|+|||||||
T Consensus 411 y~~~e~~i-l~~SHDev~~~k--~sl~~k-~------------~g~~-~~~~a~~r~~~~~~~-t~PG~pLiFmG~EfG- 471 (639)
T PRK14706 411 YRTSENYV-LAISHDEVVHLK--KSMVMK-M------------PGDW-YTQRAQYRAFLAMMW-TTPGKKLLFMGQEFA- 471 (639)
T ss_pred hhccccEe-cCCCCccccCCc--cchHhH-c------------CCCH-HHHHHHHHHHHHHHH-hCCCCcEEEeccccC-
Confidence 57889987 999999999844 466542 2 1100 001122222222333 456679999999999
Q ss_pred CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC-------------------CC---
Q psy9009 96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG-------------------RE--- 152 (258)
Q Consensus 96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~-------------------~y--- 152 (258)
+++.|++ +++++|+++|.+.. +.|.+|. +||+|-+++..|.... +|
T Consensus 472 --------~~~ew~~-~~~l~W~l~~~~~~--~~l~~~~k~L~~L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~ 540 (639)
T PRK14706 472 --------QGTEWNH-DASLPWYLTDVPDH--RGVMNLVRRLNQLYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRR 540 (639)
T ss_pred --------CCCCCCc-ccCCCCcccCCHHH--HHHHHHHHHHHHHHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEe
Confidence 4566774 68899999987654 4689999 9999999988884211 11
Q ss_pred --C--Ccc------ccCCccccccccccCCceee
Q psy9009 153 --E--TQD------FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 --e--dKV------hp~kSy~dYrvgv~~pGkY~ 176 (258)
+ ++| +| .+|.+|+||+..+|+|+
T Consensus 541 ~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~ 573 (639)
T PRK14706 541 DSESGAWSLAVANLTP-VYREQYRIGVPQGGEYR 573 (639)
T ss_pred cCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEE
Confidence 1 113 66 77999999999999998
No 6
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=98.95 E-value=1e-09 Score=106.89 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=86.3
Q ss_pred ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC-
Q psy9009 17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH- 95 (258)
Q Consensus 17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH- 95 (258)
++.|.++ +.+|||++.. |+.+++.++.|.. .. .....|+.-.+.+ +..+..|.|||+|||+
T Consensus 404 ~~~e~~~-~~~sHD~~~~--g~~~i~~~~~g~~----------~~----~~~~~r~~~~~~~-t~pG~plif~G~E~g~~ 465 (613)
T TIGR01515 404 AFSENFV-LPLSHDEVVH--GKKSLLNKMPGDY----------WQ----KFANYRALLGYMW-AHPGKKLLFMGSEFAQG 465 (613)
T ss_pred Hhhhccc-cCCCCCCccc--CcccHHHhCCCch----------HH----HHHHHHHHHHHHH-hCCCCCEEEcchhcCcC
Confidence 4556665 7889999987 5556665443320 00 1122333333333 3467899999999999
Q ss_pred CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC----------------C---CC---
Q psy9009 96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD----------------G---RE--- 152 (258)
Q Consensus 96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~----------------~---~y--- 152 (258)
+||.| +++.+|++++++ .++.|.+|. +|++|-+++..|... . +|
T Consensus 466 ~~~~~-----------~~~l~W~~~~~~--~~~~l~~~~k~L~~Lr~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~ 532 (613)
T TIGR01515 466 SEWND-----------TEQLDWHLLSFP--MHQGVSVFVRDLNRTYQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRR 532 (613)
T ss_pred CCCCC-----------CccCCCccccCc--ccHHHHHHHHHHHHHHhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEe
Confidence 77743 468899998876 678899999 999999888766321 1 11
Q ss_pred -C---Ccc-----ccCCccccccccccCCceee
Q psy9009 153 -E---TQD-----FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 -e---dKV-----hp~kSy~dYrvgv~~pGkY~ 176 (258)
+ +++ .....+.+|+||+..||+|+
T Consensus 533 ~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~ 565 (613)
T TIGR01515 533 AKKHGEALVIICNFTPVVRHQYRVGVPQPGQYR 565 (613)
T ss_pred cCCCCCeEEEEEeCCCCCccceEeCCCCCCeEE
Confidence 1 123 22356789999998899998
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.92 E-value=9.8e-10 Score=115.78 Aligned_cols=143 Identities=14% Similarity=0.098 Sum_probs=96.6
Q ss_pred CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCC
Q psy9009 3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAP 82 (258)
Q Consensus 3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gG 82 (258)
.|+++.|.++|... |.|+.| +..|||+...|+| ++ +..|+-+.++.++. .++.--+++ +..
T Consensus 1000 ~~~~~~ltf~~~ya-~~e~fv-l~~SHDevvhgk~--sl-~~km~Gd~~~k~a~-------------lR~~~a~~~-~~P 1060 (1224)
T PRK14705 1000 KWHHGTITFSLVYA-FTENFL-LPISHDEVVHGKG--SM-LRKMPGDRWQQLAN-------------LRAFLAYQW-AHP 1060 (1224)
T ss_pred hcccchHHHHHHHH-hhcCEe-cccccccccccch--hH-HHhCCCcHHHHHHH-------------HHHHHHHHH-hcC
Confidence 35666666666653 888855 7999999987655 44 35565555544422 221111223 336
Q ss_pred CceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC----CC-----
Q psy9009 83 FPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG----RE----- 152 (258)
Q Consensus 83 eGYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~----~y----- 152 (258)
+-.|+|||+|||++.. |+++ ...+|+|+|.+ ..+.+..|. +||+|-++..-|.... .+
T Consensus 1061 Gk~LlFMG~Efgq~~e---------w~~~-~~LdW~ll~~~--~h~~~~~~~rdLn~ly~~~paL~~~d~~~~gf~wi~~ 1128 (1224)
T PRK14705 1061 GKQLIFMGTEFGQEAE---------WSEQ-HGLDWFLADIP--AHRGIQLLTKDLNELYTSTPALYQRDNEPGGFQWING 1128 (1224)
T ss_pred CcCEEECccccCCCCC---------cccc-ccCCCcccCCh--hhHHHHHHHHHHHHHHhcChhhhccCCCCCceEEeec
Confidence 6899999999999842 4444 46999999977 457788999 9999999887774221 00
Q ss_pred ---C-------------Ccc-----ccCCccccccccccCCceee
Q psy9009 153 ---E-------------TQD-----FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 153 ---e-------------dKV-----hp~kSy~dYrvgv~~pGkY~ 176 (258)
+ ++| .....+.+|+|||..+|+|+
T Consensus 1129 ~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~ 1173 (1224)
T PRK14705 1129 GDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWT 1173 (1224)
T ss_pred CCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEE
Confidence 1 122 32367889999999999998
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.82 E-value=5.1e-09 Score=101.87 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred ccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCC-
Q psy9009 17 SVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGH- 95 (258)
Q Consensus 17 R~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGH- 95 (258)
++.|.++ +.+|||++.. |..+++.+|.+ +++. ..+..|+.-.++++. .+..|.|||+|||+
T Consensus 417 ~~~e~~~-l~~sHD~~~~--g~~~~~~~~~g-~~~~-------------~~~~~r~~~~~~~t~-pG~Plif~G~E~g~~ 478 (633)
T PRK12313 417 AFSENFV-LPFSHDEVVH--GKKSLMHKMPG-DRWQ-------------QFANLRLLYTYMITH-PGKKLLFMGSEFGQF 478 (633)
T ss_pred hhhcccc-cCCCCccccc--CCccHHHhcCC-CHHH-------------HHHHHHHHHHHHHhC-CCCcEeecccccccC
Confidence 3555553 6679999987 55566655533 2222 122345444455554 55899999999996
Q ss_pred CCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCC----CC---------------C--C
Q psy9009 96 PEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPD----GR---------------E--E 153 (258)
Q Consensus 96 PEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~----~~---------------y--e 153 (258)
+||-+ .++.+|++++++. ++.|.+|. .|++|-+++..|... .. | .
T Consensus 479 ~~~~~-----------~~~l~W~~~~~~~--~~~l~~~~r~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~ 545 (633)
T PRK12313 479 LEWKH-----------DESLEWHLLEDPM--NAGMQRFTSDLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRK 545 (633)
T ss_pred ccCCc-----------cCCCCccccCChh--HHHHHHHHHHHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEe
Confidence 44421 2678999987663 77899999 999999988887521 11 1 1
Q ss_pred C-----cc-----ccCCccccccccccCCceee
Q psy9009 154 T-----QD-----FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 154 d-----KV-----hp~kSy~dYrvgv~~pGkY~ 176 (258)
+ .+ ...+.+++|+|++..+|+|+
T Consensus 546 ~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~ 578 (633)
T PRK12313 546 GKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYE 578 (633)
T ss_pred CCCCCceEEEEEeCCCCcccceeECCCCCCeEE
Confidence 1 11 22345789999998889998
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.59 E-value=6.4e-08 Score=96.12 Aligned_cols=129 Identities=13% Similarity=0.031 Sum_probs=82.7
Q ss_pred cccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCC
Q psy9009 18 VALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPE 97 (258)
Q Consensus 18 ~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPE 97 (258)
|.|..+ +.+|||++.. |+.+++.++-+ +++. ..+..|+.-.++++. .+..|.|||+|||++.
T Consensus 514 ~~e~~~-l~~sHD~~~~--g~~~l~~~~~g-~~~~-------------~~~~lrl~~~~~~t~-pG~Plif~G~E~g~~~ 575 (726)
T PRK05402 514 YSENFV-LPLSHDEVVH--GKGSLLGKMPG-DDWQ-------------KFANLRAYYGYMWAH-PGKKLLFMGGEFGQGR 575 (726)
T ss_pred hhcccc-CCCCCceeee--CcccHHhhCCC-CHHH-------------HHHHHHHHHHHHHHC-CCcCEeeCchhcCCCC
Confidence 344433 5568999987 44466543322 1221 122234443344444 6679999999999996
Q ss_pred cccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC-----------------CC------C
Q psy9009 98 WLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG-----------------RE------E 153 (258)
Q Consensus 98 WiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~-----------------~y------e 153 (258)
+-| .+.+.+|++++++ .++.|.+|. .|++|-+++..|.... .+ +
T Consensus 576 ~~~----------~~~~l~W~~~~~~--~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~ 643 (726)
T PRK05402 576 EWN----------HDASLDWHLLDFP--WHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGK 643 (726)
T ss_pred CCC----------ccCcCCccccCCc--chHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecC
Confidence 433 2478899998766 577899999 9999999988885311 00 1
Q ss_pred ---Ccc-----ccCCccccccccccCCceee
Q psy9009 154 ---TQD-----FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 154 ---dKV-----hp~kSy~dYrvgv~~pGkY~ 176 (258)
+++ .....+.+|+|++..+|+|+
T Consensus 644 ~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~ 674 (726)
T PRK05402 644 DDGEPLLVVCNFTPVPRHDYRLGVPQAGRWR 674 (726)
T ss_pred CCCCeEEEEEeCCCCcccceEECCCCCCeEE
Confidence 223 22245678899888888887
No 10
>PRK12568 glycogen branching enzyme; Provisional
Probab=98.54 E-value=7.1e-08 Score=97.60 Aligned_cols=142 Identities=11% Similarity=0.062 Sum_probs=91.5
Q ss_pred cccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCC
Q psy9009 4 WHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPF 83 (258)
Q Consensus 4 W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGe 83 (258)
|+...|.++|.. .|.|+.| +.+|||+..-|+| . |++| |.. +. -...+..+..--++++.-|-
T Consensus 505 ~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~--s----l~~k-----mpG----d~-~~k~a~lR~~~~~~~~~PGk 566 (730)
T PRK12568 505 HHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTG--G----LLGQ-----MPG----DD-WRRFANLRAYLALMWAHPGD 566 (730)
T ss_pred hhhhhhhhhhhh-hhhccEe-ccCCCcccccCch--h----hhhc-----CCC----CH-HHHHHHHHHHHHHHHhCCCc
Confidence 344456666665 7889887 8999999988776 3 3444 322 11 11233334333355666555
Q ss_pred ceeeeccCcCCCCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcc-------------cCCCC
Q psy9009 84 PLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVV-------------CLSPD 149 (258)
Q Consensus 84 GYLNFMGNEFGHPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~-------------~L~~~ 149 (258)
-|.|||+|||+-. .|++. ..-.|+|+|.+ ..+-+++|- +||+|=+... |+...
T Consensus 567 -kLlFmG~Efgq~~---------ew~~~-~~ldW~ll~~~--~h~~~~~~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~ 633 (730)
T PRK12568 567 -KLLFMGAEFGQWA---------DWNHD-QSLDWHLLDGA--RHRGMQQLVGDLNAALRRTPALYRGTHRADGFDWSVAD 633 (730)
T ss_pred -ceeeCchhhCCcc---------cccCC-CCccccccCCh--hHHHHHHHHHHHHHHHHhChhhhcccCCCCCeEEEeCC
Confidence 8999999999854 34443 34689999977 457788888 9998854443 34332
Q ss_pred CCC---------C-----Ccc-----ccCCccccccccccCCceee
Q psy9009 150 GRE---------E-----TQD-----FPFGCWVNMRTPESNPLKYL 176 (258)
Q Consensus 150 ~~y---------e-----dKV-----hp~kSy~dYrvgv~~pGkY~ 176 (258)
.+. . +.| .....+.+||||+..+|+|+
T Consensus 634 d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~ 679 (730)
T PRK12568 634 DARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWR 679 (730)
T ss_pred CCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEE
Confidence 211 1 113 44455889999999999999
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.75 E-value=1.7e-05 Score=79.75 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=95.7
Q ss_pred CcccccceecccccccccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCC
Q psy9009 3 GWHNTDFKSSLTNRSVALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAP 82 (258)
Q Consensus 3 ~W~m~dI~~tLtNRR~~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gG 82 (258)
.++.+.++.+|. +...+-+.|..||||.+.|++ ++.-+|++.++.+.+.. +..+-.| ++. -
T Consensus 399 ~~~h~~~tf~~~--y~~se~~~l~~sHDevvhGk~--sl~~rm~g~~~~~~a~l---------r~~~a~~-----~~~-P 459 (628)
T COG0296 399 KYHHGELTFGLL--YAFSENVVLPLSHDEVVHGKR--SLGERMPGDAWQKFANL---------RALAAYM-----WLH-P 459 (628)
T ss_pred ccccCCCccccc--cccceeEeccccccceeeccc--chhccCCcchhhhHHHH---------HHHHHHH-----HhC-C
Confidence 356667777766 677888999999999998666 78778877755543321 1111111 111 2
Q ss_pred CceeeeccCcCC---------CCCcccCCCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCCCC
Q psy9009 83 FPLVCIKGNEFG---------HPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDGRE 152 (258)
Q Consensus 83 eGYLNFMGNEFG---------HPEWiDFPReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~~y 152 (258)
.==|.|||+||| +.+|.+++..-+....+.++|.-.+++. .| -+.... .+--..+++.|+.....+
T Consensus 460 gk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~---~y-~~~~~l~~~~~~~~~~~W~~~~~~~ 535 (628)
T COG0296 460 GKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNA---LY-RIPDPLHEQDFQPEGFEWIDADDAE 535 (628)
T ss_pred CceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHH---hh-ccCCccchhhhcccCCceeecCchh
Confidence 223667777765 6677777765555556666666555541 11 122233 445566788888876644
Q ss_pred C------C-------c-c-----ccCCccccccccccCCceeeecc
Q psy9009 153 E------T-------Q-D-----FPFGCWVNMRTPESNPLKYLLSK 179 (258)
Q Consensus 153 e------d-------K-V-----hp~kSy~dYrvgv~~pGkY~l~~ 179 (258)
. . + + +...+..+|++|+..+|.|++--
T Consensus 536 ~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~l 581 (628)
T COG0296 536 NSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVL 581 (628)
T ss_pred hhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEec
Confidence 1 1 1 1 56678999999999999998533
No 12
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=71.56 E-value=7.1 Score=38.62 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=63.7
Q ss_pred cceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCCCc-
Q psy9009 20 LTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHPEW- 98 (258)
Q Consensus 20 Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHPEW- 98 (258)
.+.|.|.+|||| +|++ |+-=||+.. + .....|+.-.+++++-|--.| |||-|||-..=
T Consensus 365 ~~~vnfl~nHD~--~gn~--~~~~Rl~~~-----~-----------~~~~~~la~alllt~pGiP~I-y~GqE~g~~~~~ 423 (542)
T TIGR02402 365 HRFVVFIQNHDQ--IGNR--ALGERLSQL-----L-----------SPGSLKLAAALLLLSPYTPLL-FMGEEYGATTPF 423 (542)
T ss_pred HHEEEEccCccc--cccc--chhhhhhhc-----C-----------CHHHHHHHHHHHHHcCCCcee-eccHhhcCCCCC
Confidence 367999999998 3333 221122210 0 013456666677777777665 89999998542
Q ss_pred ---ccC---------------------------CCCCCCChhhhhhccccccCCCCCCcccccCCh-hHHhhHhhcccCC
Q psy9009 99 ---LDF---------------------------PRAGNNSSYWHARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLS 147 (258)
Q Consensus 99 ---iDF---------------------------PReGNn~Sy~yARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~ 147 (258)
.|| |-+....||.-++=.|+..+++ .+.-+.+|= .||+|-+++..|.
T Consensus 424 ~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~--~~~~~~~~yr~Li~lRk~~~~l~ 501 (542)
T TIGR02402 424 QFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESG--EHARWLAFYRDLLALRRELPVLL 501 (542)
T ss_pred ccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCccccccc--chHHHHHHHHHHHHHhccCcccc
Confidence 233 2233445565555578877643 223344444 8999998887775
Q ss_pred CC
Q psy9009 148 PD 149 (258)
Q Consensus 148 ~~ 149 (258)
..
T Consensus 502 ~~ 503 (542)
T TIGR02402 502 LP 503 (542)
T ss_pred CC
Confidence 43
No 13
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=64.51 E-value=2.2 Score=43.82 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCCCChhhhhhccccccCC--CCCCcccccCCh-hHHhhHhhcccCCC
Q psy9009 104 AGNNSSYWHARRQWNLTDD--ELLKYKFLNSNE-TPATLDNTVVCLSP 148 (258)
Q Consensus 104 eGNn~Sy~yARRQW~L~Dd--~~LrYk~L~~FD-aM~~le~~~~~L~~ 148 (258)
++.-|+ .++-.+|.++++ +.-|.|....|= .++++.....-+..
T Consensus 472 q~~e~~-~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~ 518 (628)
T COG0296 472 QGREWN-FFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHE 518 (628)
T ss_pred cCCCCc-ccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccch
Confidence 566677 588899988887 555677777777 77766655544443
No 14
>PF12359 DUF3645: Protein of unknown function (DUF3645) ; InterPro: IPR022105 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a conserved HPD sequence motif.
Probab=57.45 E-value=4.5 Score=27.79 Aligned_cols=8 Identities=50% Similarity=1.132 Sum_probs=6.9
Q ss_pred cCcCCCCC
Q psy9009 90 GNEFGHPE 97 (258)
Q Consensus 90 GNEFGHPE 97 (258)
-.||||||
T Consensus 21 ~sEf~hPD 28 (34)
T PF12359_consen 21 RSEFSHPD 28 (34)
T ss_pred cccccCCC
Confidence 47999998
No 15
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=51.79 E-value=20 Score=36.91 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhh----hhccccccCCCCCCcccccCCh-hHHhhHhh
Q psy9009 68 STFYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWH----ARRQWNLTDDELLKYKFLNSNE-TPATLDNT 142 (258)
Q Consensus 68 ~~~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~y----ARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~ 142 (258)
+..|+.-.+.+..-|-- +-++|-|||+.. .||+.+|.- ..=.|+..+ .++-|.+|= .||+|-++
T Consensus 500 ~~~r~~~a~l~~s~GiP-~i~~GdE~g~t~------~G~~n~y~~~~~~~~~dW~~~~----~~~~l~~~~k~Li~lRk~ 568 (688)
T TIGR02100 500 RQQRNLLATLLLSQGTP-MLLAGDEFGRTQ------QGNNNAYCQDNEIGWVDWSLDE----GDDELLAFTKKLIALRKA 568 (688)
T ss_pred HHHHHHHHHHHHcCCCc-eeeecHhhccCC------CCCCCCccCCCcccccCccccc----ccHHHHHHHHHHHHHHHh
Confidence 33454444555554555 458999999974 689988832 113466432 445667777 99999999
Q ss_pred cccCCCCCC
Q psy9009 143 VVCLSPDGR 151 (258)
Q Consensus 143 ~~~L~~~~~ 151 (258)
+.-|.....
T Consensus 569 ~~~l~~~~~ 577 (688)
T TIGR02100 569 HPVLRRERF 577 (688)
T ss_pred Cchhccccc
Confidence 988876543
No 16
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=50.59 E-value=22 Score=35.49 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhhh----hccccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009 70 FYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHA----RRQWNLTDDELLKYKFLNSNE-TPATLDNTVV 144 (258)
Q Consensus 70 ~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~yA----RRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~ 144 (258)
.|+.-.++++.-|-- +-|||-|||.-. .||+.||.-. +=.|+..+. .+-+.+|= .|++|-+++.
T Consensus 462 ~rla~alllts~GiP-~iy~GdE~g~s~------~g~~n~y~~~d~~~~ldW~~~~~----~~~~~~~~~~Li~lRk~~p 530 (605)
T TIGR02104 462 QKLATAILLLSQGIP-FLHAGQEFMRTK------QGDENSYNSPDSINQLDWDRKAT----FKDDVNYIKGLIALRKAHP 530 (605)
T ss_pred HHHHHHHHHHcCCCc-eeecchhhhccC------CCCCCCccCCCcccccCcccccc----chHHHHHHHHHHHHHhhCc
Confidence 455555566665554 559999999753 4666666411 123553322 22344555 8888888887
Q ss_pred cCCCC
Q psy9009 145 CLSPD 149 (258)
Q Consensus 145 ~L~~~ 149 (258)
-|...
T Consensus 531 al~~~ 535 (605)
T TIGR02104 531 AFRLS 535 (605)
T ss_pred cccCC
Confidence 77653
No 17
>PRK03705 glycogen debranching enzyme; Provisional
Probab=47.38 E-value=14 Score=37.86 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=41.6
Q ss_pred hhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhhh----hhccccccCCCCCCcccccCCh-hHHhhHhhcccCCCCC
Q psy9009 76 FPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWH----ARRQWNLTDDELLKYKFLNSNE-TPATLDNTVVCLSPDG 150 (258)
Q Consensus 76 iT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~y----ARRQW~L~Dd~~LrYk~L~~FD-aM~~le~~~~~L~~~~ 150 (258)
+.+..-|=-.| .+|-|||+.. .|||.||.- ..=.|+..+ +-|.+|= .||+|-+++..|....
T Consensus 502 ~l~~sqG~P~i-~~GdE~grtq------~G~nN~y~~~~~i~~~dW~~~~------~~l~~f~k~Li~lRk~~~~l~~~~ 568 (658)
T PRK03705 502 TLLLSQGTPML-LAGDEHGHSQ------HGNNNAYCQDNALTWLDWSQAD------RGLTAFTAALIHLRQRIPALTQNR 568 (658)
T ss_pred HHHHcCCchHH-HhhHHhccCC------CCCCCCccCCCCccccccchhh------hHHHHHHHHHHHHHHhChhhcccc
Confidence 33333344443 6899999864 688888842 124566432 4556666 9999999999887655
Q ss_pred CC
Q psy9009 151 RE 152 (258)
Q Consensus 151 ~y 152 (258)
.+
T Consensus 569 ~~ 570 (658)
T PRK03705 569 WW 570 (658)
T ss_pred cc
Confidence 53
No 18
>PF11426 Tn7_TnsC_Int: Tn7 transposition regulator TnsC; InterPro: IPR021542 TnsC is a molecular switch that regulates transposition and interacts with TnsA which is a component of the transposase. The two proteins interact via the residues 504-555 on TnsC. The TnsA/TnsC interaction is very important in Tn7 transposition []. ; PDB: 1T0F_C.
Probab=36.45 E-value=9.9 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.694 Sum_probs=14.7
Q ss_pred hccccccCCCCCCcccccCCh
Q psy9009 114 RRQWNLTDDELLKYKFLNSNE 134 (258)
Q Consensus 114 RRQW~L~Dd~~LrYk~L~~FD 134 (258)
|-+|+=+|.+.|||.|=..=.
T Consensus 3 ~~~W~tL~sdDLRf~ySq~~~ 23 (48)
T PF11426_consen 3 RKDWHTLDSDDLRFIYSQSDN 23 (48)
T ss_dssp GGGGGGS-TT-HHHHHHTS-T
T ss_pred hhhccCCchHHHHHHHhcCCc
Confidence 568999999999999865433
No 19
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=36.05 E-value=21 Score=26.20 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.9
Q ss_pred ccCCccccccccccCCceeee
Q psy9009 157 FPFGCWVNMRTPESNPLKYLL 177 (258)
Q Consensus 157 hp~kSy~dYrvgv~~pGkY~l 177 (258)
+|...+.+|++|+..+|+|+.
T Consensus 31 ~~~~~~~~~~~~~p~~g~y~~ 51 (95)
T PF02806_consen 31 SPEAVYEDYRIGVPEAGRYKE 51 (95)
T ss_dssp SSS-EEEEEEECSSSSEEEEE
T ss_pred CCcccceeEEeCCCCcceeeE
Confidence 676689999999999999983
No 20
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=29.45 E-value=88 Score=34.58 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=42.7
Q ss_pred HHHHhhhhhhcCCCceeeeccCcCCCCCcccCCCCCCCChhh--hhhcc--ccccCCCCCCcccccCCh-hHHhhHhhcc
Q psy9009 70 FYINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYW--HARRQ--WNLTDDELLKYKFLNSNE-TPATLDNTVV 144 (258)
Q Consensus 70 ~KmirLiT~a~gGeGYLNFMGNEFGHPEWiDFPReGNn~Sy~--yARRQ--W~L~Dd~~LrYk~L~~FD-aM~~le~~~~ 144 (258)
.|+.-.+++..-|---+ ++|-||||-. .||+.+|. ..|+. |+..|. -|.+|= .|++|-+++.
T Consensus 504 ~r~a~~~l~~s~GiP~I-y~GdE~g~tq------~Gn~n~y~~~~~r~~~~W~~~~~------~l~~f~k~Li~lRk~~~ 570 (1221)
T PRK14510 504 LRLLLLTLMSFPGVPML-YYGDEAGRSQ------NGNNNGYAQDNNRGTYPWGNEDE------ELLSFFRRLIKLRREYG 570 (1221)
T ss_pred HHHHHHHHHhCCCCcEE-ecchhccccc------CCCCCCCCCCCccccCCcccccH------HHHHHHHHHHHHHHhCh
Confidence 34444445555555544 7999999875 68887773 23322 544322 355555 8999999888
Q ss_pred cCCCCC
Q psy9009 145 CLSPDG 150 (258)
Q Consensus 145 ~L~~~~ 150 (258)
-|....
T Consensus 571 ~L~~g~ 576 (1221)
T PRK14510 571 VLRQGE 576 (1221)
T ss_pred hhccCc
Confidence 886654
No 21
>PRK06764 hypothetical protein; Provisional
Probab=28.61 E-value=29 Score=28.73 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.0
Q ss_pred cccccccccCCceeeecccceeEE
Q psy9009 162 WVNMRTPESNPLKYLLSKNECEIL 185 (258)
Q Consensus 162 y~dYrvgv~~pGkY~l~~~~c~il 185 (258)
-..|.|-.++||||.+.-|-| |.
T Consensus 73 lnkyti~f~kpg~yvirvngc-iy 95 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVNGC-IY 95 (105)
T ss_pred eeeeEEEecCCccEEEEEccE-Ee
Confidence 347999999999999999999 43
No 22
>PLN02877 alpha-amylase/limit dextrinase
Probab=25.87 E-value=32 Score=37.40 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=18.1
Q ss_pred CCcccccceEEEeCCCCcccccCcCc
Q psy9009 200 TLPATLDNTVVCLSPDGREETQDFPF 225 (258)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (258)
.|-...+..||.+.+.+.+.++..|-
T Consensus 899 ~~d~~~~~ivVv~Na~~~~~~~~~~~ 924 (970)
T PLN02877 899 QLDPIYSRIVVIFNARPTEVSFESPA 924 (970)
T ss_pred ccccccCcEEEEEcCCCccEEEeccc
Confidence 33445566788888888777777774
No 23
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=23.32 E-value=1.3e+02 Score=24.98 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=31.9
Q ss_pred ccceeeeeecccccccccchhhHHHHhcChhhhcccccCCCCCcccchhHHHHHHhhhhhhcCCCceeeeccCcCCCC
Q psy9009 19 ALTWVMFQSNRAGKMRTNGIFLFLLRLLDPEINRFKNTDLDFSQLFTEESTFYINNIFPIATAPFPLVCIKGNEFGHP 96 (258)
Q Consensus 19 ~Ek~iayaEsHdQalVg~Gd~T~af~LMd~eMY~~Msv~~~~s~~id~~~~~KmirLiT~a~gGeGYLNFMGNEFGHP 96 (258)
....|.|.+|||+.=+ +-.+-+..- ..++.-.+.++.-|- =+=|+|.|+|.-
T Consensus 260 ~~~~~~f~~nHD~~r~-------~~~~~~~~~------------------~~~~a~~~ll~~pG~-P~iy~G~E~g~~ 311 (316)
T PF00128_consen 260 PYRAVNFLENHDTPRF-------ASRFGNNRD------------------RLKLALAFLLTSPGI-PMIYYGDEIGMT 311 (316)
T ss_dssp GGGEEEESSHTTSSTH-------HHHTTTHHH------------------HHHHHHHHHHHSSSE-EEEETTGGGTBB
T ss_pred cceeeecccccccccc-------hhhhcccch------------------HHHHHHHHHHcCCCc-cEEEeChhccCC
Confidence 5688999999998752 111111111 345555555555544 477999999964
No 24
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=22.32 E-value=50 Score=26.81 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=18.6
Q ss_pred cccccccCCceeeecccceeEEee
Q psy9009 164 NMRTPESNPLKYLLSKNECEILSM 187 (258)
Q Consensus 164 dYrvgv~~pGkY~l~~~~c~ils~ 187 (258)
.-.+||..||.|.|+-..=|+..|
T Consensus 24 ~~TlGVm~pGeY~F~T~~~E~M~v 47 (94)
T PF06865_consen 24 KKTLGVMLPGEYTFGTSAPERMEV 47 (94)
T ss_dssp EEEEEEE-SECEEEEESS-EEEEE
T ss_pred cceEEEEeeeEEEEcCCCCEEEEE
Confidence 467999999999999988877665
No 25
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.65 E-value=70 Score=26.34 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.2
Q ss_pred CCcc----ccCCccccccccccCCceeeecccceeEEeeec
Q psy9009 153 ETQD----FPFGCWVNMRTPESNPLKYLLSKNECEILSMEG 189 (258)
Q Consensus 153 edKV----hp~kSy~dYrvgv~~pGkY~l~~~~c~ils~~~ 189 (258)
+-|| +...|=..=.|||+.||.|.|...+-||.-+-.
T Consensus 9 dGkvkSigF~~~s~g~asVGVm~~geytFgTa~~E~Mtvv~ 49 (94)
T COG3123 9 DGKVKSIGFSSSSTGRASVGVMAPGEYTFGTAAPEEMTVVS 49 (94)
T ss_pred cceEEEEEeccCCCCceeEEEEeceeEEeccCCceEEEEEe
Confidence 5566 333444566799999999999999999987743
Done!