RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9009
         (258 letters)



>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
           1.70A {Oryza sativa japonica group} PDB: 3amk_A
          Length = 755

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 28/42 (66%), Positives = 34/42 (80%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFLN 131
           GNEFGHPEW+DFPR GNN SY   RRQW+L D + L+YK++N
Sbjct: 527 GNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMN 568


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 32/88 (36%)

Query: 105 GNNSSYWHARRQWNLTDDELLK-YKFLNSNETPATL--------DNTVVCLSPDGREETQ 155
           GN   Y+          +EL   Y      +T   L          T+  L     +  +
Sbjct: 164 GNTDDYF----------EELRDLY------QTYHVLVGDLIKFSAETLSELIRTTLDAEK 207

Query: 156 DFPFGC----WVNMRTPESNP-LKYLLS 178
            F  G     W  +  P + P   YLLS
Sbjct: 208 VFTQGLNILEW--LENPSNTPDKDYLLS 233


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 33.3 bits (75), Expect = 0.087
 Identities = 46/342 (13%), Positives = 84/342 (24%), Gaps = 140/342 (40%)

Query: 46  LDPEIN--RFKNTDL--DFSQLFTEESTF-----YINNIFP------IATAP-------- 82
           +D E    +++  D+   F   F +            +I        I  +         
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 83  -FPLVCIKGNE-----FGHPEWLDFP------------RAGNNSSYWHAR-RQWNLTDDE 123
            F  +  K  E           +++              +     Y   R R +N  D++
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQ 124

Query: 124 LLKYKFLNSNETPATLDNTVVCLSPDGR---------------------EETQD-FPFGC 161
           +     ++  +    L   ++ L P                         + Q    F  
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 162 -WVNM---RTPES-----NPLKYLLSKNECE---------------------ILSMEGFK 191
            W+N+    +PE+       L Y +  N                        +L  + ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 192 ---LV-------PHIE-----CPTLPATLDNTVV-CLSPDGR--------------EETQ 221
              LV                C  L  T    V   LS                  +E +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 222 DFPFGCWVNTRT---PES----NPLKYLLSKNECEILSMVRD 256
                 +++ R    P      NP    LS     I   +RD
Sbjct: 305 SL-LLKYLDCRPQDLPREVLTTNPR--RLSI----IAESIRD 339


>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein;
           2.60A {Homo sapiens} PDB: 3e73_A*
          Length = 411

 Score = 27.5 bits (60), Expect = 4.8
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 37  GIFLFLLRLLDPEINRF 53
           G   FL  LL P   RF
Sbjct: 390 GTIYFLADLLVPTKARF 406


>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
           cofilin, structural genomics, PSI, protein structure
           initiative; 1.70A {Caenorhabditis elegans} SCOP:
           b.69.4.1 b.69.4.1 PDB: 1pev_A
          Length = 611

 Score = 27.5 bits (62), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 199 PTLPATLDNTVVCL--SPDGR 217
           P+LP T   T V L  +P G 
Sbjct: 11  PSLPRTARGTAVVLGNTPAGD 31


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,890,074
Number of extensions: 215412
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 9
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)