RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9009
         (258 letters)



>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp.
           [TaxId: 512]}
          Length = 318

 Score = 26.7 bits (57), Expect = 3.0
 Identities = 8/47 (17%), Positives = 14/47 (29%)

Query: 71  YINNIFPIATAPFPLVCIKGNEFGHPEWLDFPRAGNNSSYWHARRQW 117
           Y+    P     +P+  I G       W   P        +  R+ +
Sbjct: 47  YVRYQIPQRAKRYPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGY 93


>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
           central domain {Escherichia coli [TaxId: 562]}
          Length = 396

 Score = 25.7 bits (55), Expect = 6.0
 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 10/41 (24%)

Query: 90  GNEFGHPEWLDFPRAGNNSSYWHARRQWNLTDDELLKYKFL 130
           GNEF      +            A   W+L +     +  +
Sbjct: 343 GNEFAQGREWNH----------DASLDWHLLEGGDNWHHGV 373


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 994,035
Number of extensions: 44669
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 6
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)