BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9010
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 71
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 72 TRT 74
RT
Sbjct: 684 PRT 686
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEP--------WNNRRNSIKLYLP 71
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 72 TRT 74
RT
Sbjct: 684 PRT 686
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 35.4 bits (80), Expect = 0.010, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 605
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+G+ +AG+++ VL++D + + G + G V T +PW+ R S L LP
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGVDAT-DDPWHGRPASAVLVLP 712
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 6 KERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 61
++R+ H++ + RV E ++ +L CS GG R DPG +Y P+ W +
Sbjct: 495 RQRETAHRYMLGLYRVMDEMTSRFPHILFESCS--GGGGRFDPGMLYYM-PQTWTS 547
>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
Sp. Gl1 At 1.9 A
Length = 956
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 22 GVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRN 64
+E+AG+ ++LD ++G R D T +E YP NR N
Sbjct: 810 ALEKAGRQTLMLDDIRRNYGQMLRYDATTCWEMYPNFAENRSN 852
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 6 KERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 61
++R+ H++ + RV E ++ +L CS GG R DPG +Y P+ W +
Sbjct: 495 RQRETAHRYMLGLYRVMDEITSRFPHILFESCS--GGGGRFDPGMLYYM-PQTWTS 547
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 6 KERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 61
++R+ H++ + RV E ++ +L CS GG R DPG +Y P+ W +
Sbjct: 495 RQRETAHRYMLGLYRVMDEITSRFPHILFESCS--GGGGRFDPGMLYYM-PQTWTS 547
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 6 KERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNN 61
++R+ H++ + RV E ++ +L CS GG R DPG +Y P+ W +
Sbjct: 495 RQRETAHRYMLGLYRVMDEITSRFPHILFESCS--GGGGRFDPGMLYYM-PQTWTS 547
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P V T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENVVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P V T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENVVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P V T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENVVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P V T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENVVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P V T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENVVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase
Complexed With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 40 FGGFNRLDPG-TVYETYP-EPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P + T P PW R + L TR+GNEN+ + M
Sbjct: 37 FGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDM 82
>pdb|1VIW|A Chain A, Tenebrio Molitor Alpha-Amylase-Inhibitor Complex
Length = 471
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 40 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKR 85
FGG P PW R + + TR+GNE+ M R
Sbjct: 37 FGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGNESAFTDMTR 82
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a
Variant Of Human Pancreatic Alpha Amylase
Length = 496
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a
Variant Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In
Complex With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In
Complex With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In
Complex With Nitrate And Acarbose
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
And Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate
And Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q
Variant Of Human Pancreatic Alpha Amylase
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q
Variant Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 40 FGGFNRLDPG---TVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSM 83
FGG P +Y + PW R + L TR+GNE++ ++M
Sbjct: 37 FGGVQVSPPNENVAIYNPF-RPWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1TMQ|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase In
Complex With Ragi Bifunctional Inhibitor
pdb|1CLV|A Chain A, Yellow Meal Worm Alpha-Amylase In Complex With The
Amaranth Alpha-Amylase Inhibitor
pdb|1JAE|A Chain A, Structure Of Tenebrio Molitor Larval Alpha-Amylase
Length = 471
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 40 FGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKR 85
FGG P PW R + + TR+G+E+ M R
Sbjct: 37 FGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTR 82
>pdb|3BRF|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221
Length = 478
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 16 ILFPRVGVEQAGKYKVVLDSDCS-------HFGGFNRLDPGTVY 52
I PR+ + + K +V+LD+ CS H F +D VY
Sbjct: 279 IALPRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDNELVY 322
>pdb|1TTU|A Chain A, Crystal Structure Of Csl Bound To Dna
pdb|2FO1|A Chain A, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
pdb|3BRD|A Chain A, Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, P212121
Length = 477
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 16 ILFPRVGVEQAGKYKVVLDSDCS-------HFGGFNRLDPGTVY 52
I PR+ + + K +V+LD+ CS H F +D VY
Sbjct: 278 IALPRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDNELVY 321
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary
Alpha- Amylase: Role Of Aromatic Residues
Length = 496
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary
Alpha-Amylase In Substrate Hydrolysis And Bacterial
Binding
Length = 496
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary
Alpha-Amylase
Length = 496
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant
Human Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human
Salivary Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 PWNNRRNSIKLYLPTRTGNENKLQSM 83
PW R + L TR+GNE++ ++M
Sbjct: 57 PWWERYQPVSYKLCTRSGNEDEFRNM 82
>pdb|4IF8|A Chain A, Structure Of Vaspin
pdb|4IF8|B Chain B, Structure Of Vaspin
Length = 414
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 95 GFGIQTLPTQSPLYLVAKIEKP 116
G G QTLP ++P LV KI+KP
Sbjct: 370 GTGAQTLPMETP--LVVKIDKP 389
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MSHNVKERQYLHQHSILFPRVGVEQAGKYKVV 32
M ++ ERQYL H +L P ++ Y+V+
Sbjct: 52 MGFSLYERQYLGLHGLLPPAFMTQEQQAYRVI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,165,946
Number of Sequences: 62578
Number of extensions: 171832
Number of successful extensions: 295
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 48
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)