BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9010
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y8H3|GLGB_EMENI 1,4-alpha-glucan-branching enzyme OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=be1 PE=2 SV=3
Length = 684
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVGVEQAG Y+VVLD+D FGG R+D GT + T WN RRN +++Y+PTRT
Sbjct: 620 RVGVEQAGTYRVVLDTDDQAFGGLGRIDQGTRFFTTDMEWNGRRNYLQVYIPTRTA 675
>sp|P0CN82|GLGB_CRYNJ 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=GLC3 PE=3 SV=1
Length = 682
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
RVGV+ AG+YKV+L SD + FGG NR+D G Y T P WN R+N +++Y P+RT
Sbjct: 622 RVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRT 676
>sp|P0CN83|GLGB_CRYNB 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=GLC3 PE=3 SV=1
Length = 682
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
RVGV+ AG+YKV+L SD + FGG NR+D G Y T P WN R+N +++Y P+RT
Sbjct: 622 RVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRT 676
>sp|Q6FJV0|GLGB_CANGA 1,4-alpha-glucan-branching enzyme OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=GLC3 PE=3 SV=1
Length = 706
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
R+GV+ AG YK+VL++D + FGG NR+D + T WNNRRN I++Y+P+RT
Sbjct: 644 RIGVDVAGTYKIVLNTDRAEFGGHNRIDEAQEFFTTDLEWNNRRNFIQVYIPSRTA 699
>sp|P32775|GLGB_YEAST 1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GLC3 PE=1 SV=2
Length = 704
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVGVE+AG Y +VL+SD + FGG NR++ + + T WNNR+N +++Y+P+R
Sbjct: 642 RVGVEKAGTYHIVLNSDRAEFGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVA 697
>sp|Q757Q6|GLGB_ASHGO 1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GLC3
PE=3 SV=1
Length = 703
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRL-DPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
R+GV++AG Y+++L+SD FGG R+ + +V+ T WN RRN I++YLP+RT
Sbjct: 640 RIGVDEAGAYRIILNSDREEFGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTA 696
>sp|Q96VA4|GLGB_ASPOR 1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=gbeA PE=2 SV=1
Length = 689
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVGVEQ+G Y++VLD+D FGG NR T + T WN R N +++Y+PTRT
Sbjct: 625 RVGVEQSGTYRIVLDTDDPAFGGLNRNLKETRFFTTDLSWNGRSNFLQVYIPTRTA 680
>sp|Q6CCT1|GLGB_YARLI 1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=GLC3 PE=3 SV=1
Length = 691
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLD-PGTVYETYPEPWNNRRNSIKLYLPTRTG 75
R+GV+Q G Y +VLDSD FGGF R+D T T P WN R N + +Y+P+R
Sbjct: 623 RIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVA 679
>sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3
PE=2 SV=1
Length = 683
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
++G E AGKY + L++D FGG +R+D Y + P W+ R+N I++Y+P R
Sbjct: 622 KIGTEWAGKYSIALNTDRKIFGGHDRIDESISYHSQPHEWDGRKNYIQVYIPCRVA 677
>sp|Q9LZS3|GLGB2_ARATH 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic
OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1
Length = 805
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
R+G + GKYK+VLDSD FGGFNRLD Y TY ++ R S +Y P RT
Sbjct: 741 RIGCSKPGKYKIVLDSDDPLFGGFNRLDRKAEYFTYDGLYDERPCSFMVYAPCRTA 796
>sp|Q6CX53|GLGB_KLULA 1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=GLC3 PE=3 SV=1
Length = 719
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPG-TVYETYPEPWNNRRNSIKLYLPTRTGNEN 78
R+GV + G Y++VL+SD +GG++R+D + Y T WN R N I++Y+P RT
Sbjct: 650 RIGVNEPGCYRIVLNSDKHEYGGWDRIDESQSKYFTTDLKWNERNNFIQVYIPNRTALVL 709
Query: 79 KLQSMKR 85
L S R
Sbjct: 710 ALDSRVR 716
>sp|O23647|GLGB1_ARATH 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic
OS=Arabidopsis thaliana GN=SBE2.1 PE=1 SV=1
Length = 858
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
R+G GKYK+VLDSD S FGGFNRLD + T ++R S +Y P RT
Sbjct: 776 RIGCSVPGKYKIVLDSDNSLFGGFNRLDDSAEFFTSDGRHDDRPCSFMVYAPCRT 830
>sp|Q6EAS5|GLGB_HORSE 1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2
SV=1
Length = 699
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVG GK+K+VLDSD + +GG RLD T + + P N R +S+ +Y+P+R
Sbjct: 634 RVGTTLPGKFKIVLDSDAAEYGGHQRLDHNTDFFSEPYEHNERPSSLLVYIPSRVA 689
>sp|Q6T308|GLGB_FELCA 1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1
Length = 699
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVG GK+++VLD+D + +GG RLD T + + P N R S+ +Y+P R G
Sbjct: 634 RVGTTLPGKFRIVLDTDAAEYGGHQRLDHSTEFFSQPFKHNERPCSLLVYIPNRVG 689
>sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1
Length = 702
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVG GK+K+VLDSD + +GG RLD T Y N R S+ +Y+P+R
Sbjct: 637 RVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEHNGRPYSLLVYIPSRVA 692
>sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3
Length = 702
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVG GK+K+VLDSD + +GG RLD T + + N R S+ +Y+P+R
Sbjct: 637 RVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVA 692
>sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic
OS=Zea mays GN=SBE1 PE=1 SV=1
Length = 799
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
R+G + G YKVVLDSD FGGF+R+ + T +NR S +Y P+RT
Sbjct: 737 RIGCRKPGVYKVVLDSDAGLFGGFSRIHHAAEHFTADCSHDNRPYSFSVYTPSRT 791
>sp|Q555Q9|GLGB_DICDI 1,4-alpha-glucan-branching enzyme OS=Dictyostelium discoideum
GN=glgB PE=3 SV=1
Length = 678
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
R+G GK+ VLDSD FGG R+ + T +PW++R+ S+ +Y+P+RT
Sbjct: 616 RIGSGVPGKFINVLDSDRKEFGGHVRIGKDNYHYTEDKPWHDRKYSLLIYIPSRT 670
>sp|Q6BXN1|GLGB_DEBHA 1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=GLC3 PE=3 SV=1
Length = 711
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGT-------VYETYPEPWNNRRNSIKLYLPT 72
++GVE G Y++VL+SD FGG R++ + T E WN+R N++ Y+P+
Sbjct: 639 KIGVETPGVYQIVLNSDSLSFGGHGRIEETNKETGEKLQFFTNNERWNDRSNALFCYIPS 698
Query: 73 RTG 75
RT
Sbjct: 699 RTA 701
>sp|Q01401|GLGB_ORYSJ 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic
OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2
Length = 820
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEP--------WNNRRNSIKLYLP 71
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 689 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 748
Query: 72 TRT 74
RT
Sbjct: 749 PRT 751
>sp|Q24VW3|GLGB_DESHY 1,4-alpha-glucan branching enzyme GlgB OS=Desulfitobacterium
hafniense (strain Y51) GN=glgB PE=3 SV=1
Length = 632
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPT 72
R+GVE A Y+ +L++D + FGG+ +PG + + PW+ R S+++ +P
Sbjct: 570 RIGVEMAKGYREILNTDSTDFGGWGMTNPGLL-KVEGVPWHGREFSLEIRVPA 621
>sp|Q8CZE8|GLGB_OCEIH 1,4-alpha-glucan branching enzyme GlgB OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=glgB PE=3 SV=1
Length = 637
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
++GV ++G+YK + +SD FGG +++ G + ++PE W+ IK+ +P
Sbjct: 568 KIGVPESGRYKEIFNSDSVRFGGSGQINEGEHF-SFPEKWHGLSQHIKIKVP 618
>sp|Q11EX1|GLGB_MESSB 1,4-alpha-glucan branching enzyme GlgB OS=Mesorhizobium sp. (strain
BNC1) GN=glgB PE=3 SV=1
Length = 738
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+G+ AG ++ +L+SD +GG + + GTV T EPW+ R S L LP
Sbjct: 677 RIGLPNAGIWREILNSDDRRYGG-SDVTNGTVTATTDEPWHGRPASAILRLP 727
>sp|Q0AGJ0|GLGB_NITEC 1,4-alpha-glucan branching enzyme GlgB OS=Nitrosomonas eutropha
(strain C91) GN=glgB PE=3 SV=1
Length = 732
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
RVGV ++ Y+ V +SD +++GG N +PG + T + W+ + +SI + LP G
Sbjct: 674 RVGVPESRTYQEVFNSDSTYYGGSNIGNPGDIVPT-GQQWSGQVDSIIITLPPLAG 728
>sp|Q1IZQ3|GLGB_DEIGD 1,4-alpha-glucan branching enzyme GlgB OS=Deinococcus geothermalis
(strain DSM 11300) GN=glgB PE=3 SV=1
Length = 652
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 21 VGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
+GV Q G+Y+V+L +D +GGF P + E WN + + ++L LP
Sbjct: 585 IGVPQGGEYRVLLSTDDGEYGGFGTQQPDLTAKE--EGWNGQTHHLRLNLP 633
>sp|D2WL32|GLGB3_ARATH 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1
Length = 899
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 21 VGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETY------PEPWNNRRNSIKLYLPTRT 74
VGVE+AG+Y ++L+SD +GG G V E + + + +RN ++++LP+RT
Sbjct: 833 VGVEEAGEYTMILNSDEVKYGG-----QGIVTEDHYLQRSISKRIDGQRNCLEVFLPSRT 887
Query: 75 GNENKLQSMKR 85
KL + R
Sbjct: 888 AQVYKLTRILR 898
>sp|B3PGN4|GLGB_CELJU 1,4-alpha-glucan branching enzyme GlgB OS=Cellvibrio japonicus
(strain Ueda107) GN=glgB PE=3 SV=1
Length = 737
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKL 68
R+GV AG+Y+ V +SD +GG N + +Y T P PW N S+++
Sbjct: 677 RIGVPVAGQYQEVFNSDSQFYGGSNLGNANPLY-TQPVPWMNHGQSLEV 724
>sp|Q8PDD1|GLGB2_XANCP 1,4-alpha-glucan branching enzyme GlgB 2 OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=glgB2 PE=3 SV=1
Length = 729
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
RVGV +AG ++ +L++D +H+GG N L G T P + S++L LP
Sbjct: 668 RVGVPRAGGWREILNTDSAHYGGSN-LGNGGRLLTEPTGMHGHAQSLRLTLP 718
>sp|Q4UZL7|GLGB2_XANC8 1,4-alpha-glucan branching enzyme GlgB 2 OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=glgB2 PE=3 SV=1
Length = 729
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
RVGV +AG ++ +L++D +H+GG N L G T P + S++L LP
Sbjct: 668 RVGVPRAGGWREILNTDSAHYGGSN-LGNGGRLLTEPTGMHGHAQSLRLTLP 718
>sp|A3PIQ5|GLGB_RHOS1 1,4-alpha-glucan branching enzyme GlgB OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=glgB PE=3 SV=1
Length = 728
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+GV + G+++ +L+SD + +GG + +PG + + W+ R S++L LP
Sbjct: 668 RIGVPEGGEWREILNSDAAIYGGSDVGNPGGL-QAEEVSWHGRPASLRLTLP 718
>sp|A1U0K1|GLGB_MARAV 1,4-alpha-glucan branching enzyme GlgB OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=glgB PE=3 SV=1
Length = 631
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+GV G ++ + +SD + +GG N +P + + P PW R S++L +P
Sbjct: 570 RIGVPTGGNWQEIFNSDSTWYGGSNLGNP-LLLQAEPTPWMARPCSVELTVP 620
>sp|B8CVY1|GLGB_HALOH 1,4-alpha-glucan branching enzyme GlgB OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=glgB PE=3 SV=1
Length = 630
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+GV + +YK V +SD FGG + + T+ + +PW+NR SI++ +P
Sbjct: 568 RIGVPEFKEYKEVFNSDLEKFGGSGQKN-STIIQPSEQPWHNRPYSIEITIP 618
>sp|Q3J3M6|GLGB_RHOS4 1,4-alpha-glucan branching enzyme GlgB OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glgB PE=3 SV=1
Length = 728
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+GV + G+++ +L+SD + +GG + +PG + + W+ R S++L LP
Sbjct: 668 RIGVPEGGEWREILNSDAAIYGGSDVGNPGGL-QAEEFSWHGRPASLRLTLP 718
>sp|Q6CZK0|GLGB_ERWCT 1,4-alpha-glucan branching enzyme GlgB OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glgB
PE=3 SV=1
Length = 725
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW--NNRRNSIKLYLP 71
R+G+ Q G ++ V+++D H+ G ++ + GT+Y E W + R++S+ L +P
Sbjct: 664 RIGINQPGGWREVMNTDSVHYNGSDQGNVGTIYS---EEWGSHQRQHSLVLTIP 714
>sp|A4WFL5|GLGB_ENT38 1,4-alpha-glucan branching enzyme GlgB OS=Enterobacter sp. (strain
638) GN=glgB PE=3 SV=1
Length = 728
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D SH+ G N + G V E + R +S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSSHYHGSNAGNAGAVQSDEHES-HGRPHSLSLTLP 716
>sp|Q31VJ1|GLGB_SHIBS 1,4-alpha-glucan branching enzyme GlgB OS=Shigella boydii serotype
4 (strain Sb227) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q21M30|GLGB_SACD2 1,4-alpha-glucan branching enzyme GlgB OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=glgB PE=3 SV=1
Length = 729
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENK 79
RVGV Q G Y+ +L++D FGG N + G V+ W+ R S+ + +P +
Sbjct: 668 RVGVNQPGYYRELLNTDSELFGGSNLGNEGGVHSE-EIAWHQRPQSVSINIPALAAVVFQ 726
Query: 80 LQS 82
L S
Sbjct: 727 LDS 729
>sp|Q3YW93|GLGB_SHISS 1,4-alpha-glucan branching enzyme GlgB OS=Shigella sonnei (strain
Ss046) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q32AV3|GLGB_SHIDS 1,4-alpha-glucan branching enzyme GlgB OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|P07762|GLGB_ECOLI 1,4-alpha-glucan branching enzyme GlgB OS=Escherichia coli (strain
K12) GN=glgB PE=1 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|B1IP32|GLGB_ECOLC 1,4-alpha-glucan branching enzyme GlgB OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|A8A5P2|GLGB_ECOHS 1,4-alpha-glucan branching enzyme GlgB OS=Escherichia coli O9:H4
(strain HS) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q8X6X6|GLGB_ECO57 1,4-alpha-glucan branching enzyme GlgB OS=Escherichia coli O157:H7
GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|A7ZSW5|GLGB_ECO24 1,4-alpha-glucan branching enzyme GlgB OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=glgB PE=3 SV=1
Length = 728
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q2W2Q6|GLGB_MAGSA 1,4-alpha-glucan branching enzyme GlgB OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=glgB PE=3
SV=1
Length = 740
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+GV + G Y+ +L++D +GG N + G V+ T PW+ SI L LP
Sbjct: 679 RIGVPEPGWYRELLNTDSEWYGGANIHNGGGVH-TEEVPWHGHGFSICLRLP 729
>sp|P30924|GLGB_SOLTU 1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2
SV=2
Length = 861
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE 57
+VG + GKY+V LDSD FGG R + T PE
Sbjct: 709 KVGCDLPGKYRVALDSDAWEFGGHGRTGHDVDHFTSPE 746
>sp|Q2YB47|GLGB_NITMU 1,4-alpha-glucan branching enzyme GlgB OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=glgB PE=3 SV=1
Length = 746
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
R+GV +G Y+ + +SD ++GG + + G++ T +P R +SI + LP G
Sbjct: 677 RIGVPTSGSYQEIFNSDSRYYGGSDLGNMGSI-RTTGQPSMERMDSIVITLPPLAG 731
>sp|Q0SZN2|GLGB_SHIF8 1,4-alpha-glucan branching enzyme GlgB OS=Shigella flexneri
serotype 5b (strain 8401) GN=glgB PE=3 SV=1
Length = 728
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSIHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q83PV3|GLGB_SHIFL 1,4-alpha-glucan branching enzyme GlgB OS=Shigella flexneri GN=glgB
PE=3 SV=1
Length = 728
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV+ + R++S+ L LP
Sbjct: 666 RFGINQPGKWREILNTDSIHYHGSNAGNGGTVHSDEIAS-HGRQHSLSLTLP 716
>sp|Q93HU3|GLGB_RHOMR 1,4-alpha-glucan branching enzyme GlgB OS=Rhodothermus marinus
GN=glgB PE=3 SV=1
Length = 621
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
RVGV G + VL+SD +GG + G V E PE W+ R ++L LP
Sbjct: 559 RVGVPIGGPWHEVLNSDAVAYGGSGMGNFGRV-EAVPESWHGRPFHLELTLP 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,927,798
Number of Sequences: 539616
Number of extensions: 2171788
Number of successful extensions: 4108
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 3992
Number of HSP's gapped (non-prelim): 186
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)