Query psy9010
Match_columns 131
No_of_seqs 114 out of 1012
Neff 4.9
Searched_HMMs 29240
Date Sat Aug 17 01:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k1d_A 1,4-alpha-glucan-branch 99.3 2.9E-12 1E-16 115.6 7.0 70 9-80 652-721 (722)
2 3aml_A OS06G0726400 protein; s 99.1 7.4E-11 2.5E-15 106.6 7.7 76 8-83 612-695 (755)
3 1m7x_A 1,4-alpha-glucan branch 98.9 1.5E-09 5E-14 95.2 4.8 71 9-81 545-615 (617)
4 1ua7_A Alpha-amylase; beta-alp 83.3 0.51 1.7E-05 38.7 2.1 41 18-80 381-421 (422)
5 1ji1_A Alpha-amylase I; beta/a 73.0 2.2 7.5E-05 37.0 3.1 41 18-79 596-636 (637)
6 2guy_A Alpha-amylase A; (beta- 50.4 11 0.00036 31.1 3.1 19 64-82 449-467 (478)
7 4aie_A Glucan 1,6-alpha-glucos 43.8 34 0.0012 28.0 5.1 16 67-82 526-541 (549)
8 1hvx_A Alpha-amylase; hydrolas 43.6 30 0.001 28.9 4.9 18 65-82 467-484 (515)
9 4gqr_A Pancreatic alpha-amylas 42.1 8.7 0.0003 30.8 1.3 54 9-74 430-483 (496)
10 4cpa_I Metallocarboxypeptidase 40.6 7.6 0.00026 22.6 0.5 9 114-122 9-17 (38)
11 2wc7_A Alpha amylase, catalyti 38.5 14 0.00047 30.6 2.0 16 65-80 471-486 (488)
12 1ud2_A Amylase, alpha-amylase; 36.0 46 0.0016 27.3 4.8 16 65-80 464-479 (480)
13 1g94_A Alpha-amylase; beta-alp 35.7 23 0.00079 29.0 2.9 17 65-81 428-444 (448)
14 2wan_A Pullulanase; hydrolase, 30.4 44 0.0015 30.6 4.1 44 18-80 878-921 (921)
15 1m53_A Isomaltulose synthase; 29.3 1E+02 0.0034 26.1 5.9 14 67-80 556-569 (570)
16 2e8y_A AMYX protein, pullulana 26.6 46 0.0016 29.3 3.4 15 67-81 697-711 (718)
17 4do4_A Alpha-N-acetylgalactosa 23.0 49 0.0017 26.3 2.7 23 64-86 367-389 (400)
18 3s9x_A ASCH domain; MCSG, PSI- 22.1 52 0.0018 24.5 2.4 16 22-37 72-87 (159)
19 1t62_A Conserved hypothetical 21.4 53 0.0018 24.5 2.4 16 22-37 64-79 (166)
No 1
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=99.29 E-value=2.9e-12 Score=115.56 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=63.5
Q ss_pred cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010 9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKL 80 (131)
Q Consensus 9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~ 80 (131)
||.+. .+++|+||||.+|.|++|||||+..|||++. .+...+.+.+.+|++++++++|+|||++++||++
T Consensus 652 N~s~~-~~~~y~igvp~~G~~~eilnsd~~~ygG~~~-~~~~~~~~~~~~~~g~~~s~~l~lpp~~~~~~~~ 721 (722)
T 3k1d_A 652 NFAGA-EHRDYRLGLPRAGRWREVLNTDATIYHGSGI-GNLGGVDATDDPWHGRPASAVLVLPPTSALWLTP 721 (722)
T ss_dssp ECSSS-CEEEEEEEESSCEEEEEEEETTCGGGTSCCC-SCTTEEEEESCCBTTBSEEEEEEECTTEEEEEEE
T ss_pred eCCCC-CceeEEeccCCCCEEEEEeeCchhhcCCCCc-CCCCeEEEeeeccCCeeeEEEEEECCCEEEEEEE
Confidence 77654 6789999999999999999999999999987 5556788999999999999999999999999986
No 2
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A
Probab=99.13 E-value=7.4e-11 Score=106.61 Aligned_cols=76 Identities=32% Similarity=0.371 Sum_probs=65.4
Q ss_pred ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEee--------ecCCCCcccEEEEecCCceEEEEE
Q psy9010 8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETY--------PEPWNNRRNSIKLYLPTRTGNENK 79 (131)
Q Consensus 8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~--------~~~~~gr~~sL~I~LPplSaiIfk 79 (131)
-||.+..++.+|+||||.+|.|++|||||+..|||++.+++...+.+. +.++++++++++|+|||++++||+
T Consensus 612 ~N~s~~~~~~~~~i~vp~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lPp~s~~vl~ 691 (755)
T 3aml_A 612 FNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYY 691 (755)
T ss_dssp EECCSSCCEEEEEEEESSCSEEEEEEETTSGGGTSCCCSCTTCCEECEECSCTTCGGGSBTTBSEEEEEEECTTEEEEEE
T ss_pred EECCCCCccceeEECCCCCCeEEEEEeCCccccCCccccCCccceecccccccccccccccCCCCeEEEEECCCEEEEEE
Confidence 388888789999999999999999999999999998865444456664 467899999999999999999999
Q ss_pred ecch
Q psy9010 80 LQSM 83 (131)
Q Consensus 80 ~~~~ 83 (131)
....
T Consensus 692 ~~~~ 695 (755)
T 3aml_A 692 RVDE 695 (755)
T ss_dssp ECCT
T ss_pred EcCc
Confidence 8753
No 3
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=98.86 E-value=1.5e-09 Score=95.16 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=62.3
Q ss_pred cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010 9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ 81 (131)
Q Consensus 9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~ 81 (131)
||.+ ..+.+|+||+|.+|.|++|||||+..|||++.. +...+.+...++++++++++|+|||++++||+.+
T Consensus 545 N~s~-~~~~~~~i~~p~~g~~~~~l~sd~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~lpp~s~~vl~~~ 615 (617)
T 1m7x_A 545 NFTP-VPRHDYRFGINQPGKWREILNTDSMHYHGSNAG-NGGTVHSDEIASHGRQHSLSLTLPPLATIWLVRE 615 (617)
T ss_dssp ECSS-CCEEEECCBCSSCSEEEEEEETTSTGGGCCCCS-CCSCEECBSCCBTTBSCBCCEEECTTEEEEEEEE
T ss_pred CCCC-CCccceEECCCCCCeEEEEEeCcccccCCCCcC-CCCcccccccccCCCCceEEEEECCCEEEEEEEc
Confidence 6666 467789999999999999999999999998874 3456888888999999999999999999999865
No 4
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=83.26 E-value=0.51 Score=38.74 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010 18 FPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKL 80 (131)
Q Consensus 18 dYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~ 80 (131)
.+.+++| +|.|+.+|+++ .+.+ . ..++++.|||++++||++
T Consensus 381 ~~~~~l~-~g~~~d~l~~~--------------~~~~-~------~~~~~~~lpp~~~~vl~~ 421 (422)
T 1ua7_A 381 NTATKLP-DGRYDNKAGAG--------------SFQV-N------DGKLTGTINARSVAVLYP 421 (422)
T ss_dssp EEECCSC-SEEEECTTSSC--------------EEEE-E------TTEEEEEECTTEEEEECC
T ss_pred EEecccC-CCeeeeeecCc--------------eEEe-e------CCEEEEEECCCceEEEeC
Confidence 4555777 67788777642 1221 1 147899999999999974
No 5
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A
Probab=72.99 E-value=2.2 Score=37.03 Aligned_cols=41 Identities=5% Similarity=0.089 Sum_probs=26.7
Q ss_pred CCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEE
Q psy9010 18 FPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENK 79 (131)
Q Consensus 18 dYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk 79 (131)
.+.+|+|..+.|+++|+++. +.. ....++|.|||++++||+
T Consensus 596 ~~~~~~~~~~~~~~~l~~~~--------------~~~-------~~~~~~~~l~p~s~~vl~ 636 (637)
T 1ji1_A 596 VWQLSMPNGSTVTDKITGHS--------------YTV-------QNGMVTVAVDGHYGAVLA 636 (637)
T ss_dssp GGGGTCCTTCEEEETTTCCE--------------EEC-------BTTBEEEEECTTEEEEEE
T ss_pred ccccccCCCceEEEeccCce--------------EEe-------cCCeEEEEECCCEEEEEE
Confidence 34445666777887776531 111 123578999999999986
No 6
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=50.44 E-value=11 Score=31.12 Aligned_cols=19 Identities=0% Similarity=-0.141 Sum_probs=15.9
Q ss_pred cEEEEecCCceEEEEEecc
Q psy9010 64 NSIKLYLPTRTGNENKLQS 82 (131)
Q Consensus 64 ~sL~I~LPplSaiIfk~~~ 82 (131)
..+++.|||.+++||.++.
T Consensus 449 g~~~~~l~~~~~~v~~~~~ 467 (478)
T 2guy_A 449 GNVPVPMAGGLPRVLYPTE 467 (478)
T ss_dssp SCEEEEECTTCCEEEEEGG
T ss_pred CEEEEEECCCcEEEEEehh
Confidence 3678999999999999763
No 7
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=43.82 E-value=34 Score=28.00 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=13.7
Q ss_pred EEecCCceEEEEEecc
Q psy9010 67 KLYLPTRTGNENKLQS 82 (131)
Q Consensus 67 ~I~LPplSaiIfk~~~ 82 (131)
+|.|||++++||+..+
T Consensus 526 ~i~L~P~~~~vlkl~e 541 (549)
T 4aie_A 526 NITLKPYEAFISKVIE 541 (549)
T ss_dssp EEEECTTCEEEEEEC-
T ss_pred eEEECCCEEEEEEEEE
Confidence 5889999999999875
No 8
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=43.57 E-value=30 Score=28.91 Aligned_cols=18 Identities=0% Similarity=-0.306 Sum_probs=15.8
Q ss_pred EEEEecCCceEEEEEecc
Q psy9010 65 SIKLYLPTRTGNENKLQS 82 (131)
Q Consensus 65 sL~I~LPplSaiIfk~~~ 82 (131)
++++.|||++++||..+.
T Consensus 467 ~~~~~l~~~s~~v~~~~~ 484 (515)
T 1hvx_A 467 WGEFKVNGGSVSVWVPRK 484 (515)
T ss_dssp EEEEEECTTCEEEEEEC-
T ss_pred eEEEEECCCeEEEEEECC
Confidence 789999999999999864
No 9
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=42.06 E-value=8.7 Score=30.78 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=31.7
Q ss_pred cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCce
Q psy9010 9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74 (131)
Q Consensus 9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplS 74 (131)
|+.+...--.+.+++| +|+|..+|+.|.....+++. .+.+ ..+| .++|+||+.+
T Consensus 430 N~~~~~~~~~~~t~lp-~G~y~Dvlsg~~~~~~~tg~-----~vtV---~~~G---~~~i~v~~~~ 483 (496)
T 4gqr_A 430 NNDDWSFSLTLQTGLP-AGTYCDVISGDKINGNCTGI-----KIYV---SDDG---KAHFSISNSA 483 (496)
T ss_dssp ECSSSCEEEEEECCCC-SEEEECTTTCCEETTEESSC-----EEEE---CTTS---EEEEEECTTS
T ss_pred ECCCCCEEEEEEcCCC-CcEEEEEEcCceecccccce-----EEEE---CCCC---EEEEEECCCC
Confidence 4444333335677888 78999988876554333321 2221 1233 6788898887
No 10
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=40.64 E-value=7.6 Score=22.64 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=7.3
Q ss_pred cCCCcccce
Q psy9010 114 EKPCSTREV 122 (131)
Q Consensus 114 ~~~~~~~~~ 122 (131)
-|||+|++-
T Consensus 9 ~KPC~T~DD 17 (38)
T 4cpa_I 9 NKPCKTHDD 17 (38)
T ss_dssp TCBCSSSSS
T ss_pred CCCccCccc
Confidence 599999863
No 11
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=38.55 E-value=14 Score=30.58 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.8
Q ss_pred EEEEecCCceEEEEEe
Q psy9010 65 SIKLYLPTRTGNENKL 80 (131)
Q Consensus 65 sL~I~LPplSaiIfk~ 80 (131)
.+++.|||++++||+.
T Consensus 471 ~~~~~l~p~~~~v~~~ 486 (488)
T 2wc7_A 471 QLSLTLPARSGCILGT 486 (488)
T ss_dssp EEEEEECTTEEEEECC
T ss_pred EEEEEECCCEEEEEEe
Confidence 4679999999999975
No 12
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=35.96 E-value=46 Score=27.29 Aligned_cols=16 Identities=0% Similarity=-0.261 Sum_probs=14.3
Q ss_pred EEEEecCCceEEEEEe
Q psy9010 65 SIKLYLPTRTGNENKL 80 (131)
Q Consensus 65 sL~I~LPplSaiIfk~ 80 (131)
.+++.|||++++||..
T Consensus 464 ~~~~~l~~~s~~v~~~ 479 (480)
T 1ud2_A 464 WGEFFTNGGSVSVYVN 479 (480)
T ss_dssp EEEEEECTTEEEEEEC
T ss_pred eEEEEECCCeEEEEec
Confidence 6889999999999975
No 13
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=35.69 E-value=23 Score=28.95 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.7
Q ss_pred EEEEecCCceEEEEEec
Q psy9010 65 SIKLYLPTRTGNENKLQ 81 (131)
Q Consensus 65 sL~I~LPplSaiIfk~~ 81 (131)
.+++.|||++++||...
T Consensus 428 ~~~~~l~~~s~~vl~~~ 444 (448)
T 1g94_A 428 TINLNIGAWDAMAIHKN 444 (448)
T ss_dssp EEECCBCTTEEEEEETT
T ss_pred eEEEEECCCceEEEEec
Confidence 57899999999999764
No 14
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}
Probab=30.36 E-value=44 Score=30.61 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=26.7
Q ss_pred CCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010 18 FPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKL 80 (131)
Q Consensus 18 dYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~ 80 (131)
...+.+| .|.|+.+++++.....+ . . . ..+ .+.|||++++||++
T Consensus 878 ~~~~~Lp-~g~w~~~~~~~~~~~~~------~-~---~---~~g-----~~~l~p~s~~Vl~~ 921 (921)
T 2wan_A 878 SQTLNLP-SGDWTIVGLGDQIGEKS------L-G---H---VMG-----NVQVPAISTLILKQ 921 (921)
T ss_dssp CEEEECC-SSCEEEEEETTEESSSC------S-C---E---ECS-----EEEECSSEEEEEEC
T ss_pred CEEEECC-CCcEEEEEcCCCCCccc------c-c---c---cCc-----eEEECCCEEEEEEC
Confidence 3456676 36788888876432211 0 0 0 011 58899999999863
No 15
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=29.32 E-value=1e+02 Score=26.12 Aligned_cols=14 Identities=29% Similarity=0.238 Sum_probs=12.3
Q ss_pred EEecCCceEEEEEe
Q psy9010 67 KLYLPTRTGNENKL 80 (131)
Q Consensus 67 ~I~LPplSaiIfk~ 80 (131)
.+.|||++++||+.
T Consensus 556 ~~~L~p~~~~v~~~ 569 (570)
T 1m53_A 556 SLSLSPWQAGVYKL 569 (570)
T ss_dssp EEEECTTCEEEEEE
T ss_pred eEEECCCeEEEEEE
Confidence 58899999999975
No 16
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*
Probab=26.55 E-value=46 Score=29.31 Aligned_cols=15 Identities=7% Similarity=-0.248 Sum_probs=13.1
Q ss_pred EEecCCceEEEEEec
Q psy9010 67 KLYLPTRTGNENKLQ 81 (131)
Q Consensus 67 ~I~LPplSaiIfk~~ 81 (131)
++.|||++++||...
T Consensus 697 ~~~l~p~s~~vl~~~ 711 (718)
T 2e8y_A 697 TVAVNGIGTVILYLA 711 (718)
T ss_dssp EEEEESSEEEEEEEC
T ss_pred EEEECCCEEEEEEEC
Confidence 588999999999874
No 17
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=22.95 E-value=49 Score=26.35 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=18.5
Q ss_pred cEEEEecCCceEEEEEecchhhh
Q psy9010 64 NSIKLYLPTRTGNENKLQSMKRY 86 (131)
Q Consensus 64 ~sL~I~LPplSaiIfk~~~~~~~ 86 (131)
.++++.|||-++.+|+..++|+-
T Consensus 367 ~~~~~~v~phg~~l~~ltPvk~~ 389 (400)
T 4do4_A 367 TNFTVIINPSGVVMWYLYPIKNL 389 (400)
T ss_dssp CEEEEEECTTCEEEEEEEEEC--
T ss_pred ceEEEEECCCeEEEEEEEecCcc
Confidence 46889999999999999877664
No 18
>3s9x_A ASCH domain; MCSG, PSI-2, structural genomics, midwest center for structu genomics, unknown function; 1.35A {Vibrio cholerae tma 21}
Probab=22.06 E-value=52 Score=24.49 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.2
Q ss_pred ccCCCCeEEEEEcCCC
Q psy9010 22 GVEQAGKYKVVLDSDC 37 (131)
Q Consensus 22 GVP~~G~YkeILNSD~ 37 (131)
.+|..|.|.+|||++.
T Consensus 72 ~lP~vG~~~IvlD~~g 87 (159)
T 3s9x_A 72 LMPQVGHLQVVTNWDG 87 (159)
T ss_dssp CCCCTTCEEEEECTTC
T ss_pred CCCCcCCEEEEECCCC
Confidence 6899999999999973
No 19
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=21.39 E-value=53 Score=24.54 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=14.1
Q ss_pred ccCCCCeEEEEEcCCC
Q psy9010 22 GVEQAGKYKVVLDSDC 37 (131)
Q Consensus 22 GVP~~G~YkeILNSD~ 37 (131)
.+|..|.|.+|||++.
T Consensus 64 ~lP~vG~~~Ivld~~g 79 (166)
T 1t62_A 64 QLPKAGQYDIILDGQS 79 (166)
T ss_dssp CCCCTTCEEEEECTTS
T ss_pred CCCCCCcEEEEEcCCC
Confidence 4899999999999973
Done!