RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9010
(131 letters)
>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE;
1.70A {Oryza sativa japonica group} PDB: 3amk_A
Length = 755
Score = 77.4 bits (191), Expect = 6e-18
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 71
+VG + GKY+V LDSD FGG R+ + T PE +NNR NS K+ P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 72 TRTG 75
RT
Sbjct: 684 PRTC 687
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis
H37RV, mesophilic human pathogen, RV1326C gene, glycosyl
transferase; 2.33A {Mycobacterium tuberculosis}
Length = 722
Score = 58.8 bits (143), Expect = 2e-11
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R+G+ +AG+++ VL++D + + G + G V + +PW+ R S L LP
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPWHGRPASAVLVLP 712
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta
sandwich, transferase; 2.30A {Escherichia coli} SCOP:
b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Length = 617
Score = 58.7 bits (143), Expect = 2e-11
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
R G+ Q GK++ +L++D H+ G N + GTV + + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLP 605
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 8e-04
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 20/92 (21%)
Query: 47 DPGTVYETYPEPWNNRRNSIKLYLP---TRTGNENKLQSMKRYIQTESN-----MNGFGI 98
P + Y E + N +++ +R KL+ ++ N + G G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 99 QTLPTQSPLYLVAKIEKPCSTREVVKAPLPFG 130
+ + C + +V + F
Sbjct: 164 TW--------VALDV---CLSYKVQCK-MDFK 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.037
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 18/63 (28%)
Query: 2 SHNVKERQYLHQH-SILFPRVGVEQAGKYKVVLDSDCSHFGG-------FNRLDPGTVYE 53
+ + +R + + S LF VG A + FGG F L +Y+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--------FGGQGNTDDYFEELR--DLYQ 178
Query: 54 TYP 56
TY
Sbjct: 179 TYH 181
Score = 29.6 bits (66), Expect = 0.33
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYE 53
YL I P +GV Q Y V G PG +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVT----AKLLG----FTPGELRS 265
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.7
Identities = 4/8 (50%), Positives = 5/8 (62%)
Query: 64 NSIKLYLP 71
S+KLY
Sbjct: 27 ASLKLYAD 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 25.7 bits (57), Expect = 5.1
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 45 RLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRY 86
+LD + + + + KL + E L RY
Sbjct: 216 KLDQD-----HKRCFAHYKQVKKLNKLIESAEE--LIRDGRY 250
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase,
oxotransferase, molybdoenzyme, MO-cofactor, molybdenum;
HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2
c.81.1.1
Length = 829
Score = 25.5 bits (56), Expect = 6.7
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 15 SILFPRVGVEQAGKYKVVLDSDCSHFGGFN-RLDPGTVYETYPEPWNNRRNSIKLYLPTR 73
S+L P + +AG + + SHFG F + G + E P + + +
Sbjct: 22 SVLTPLNALAKAGINEDEWLTTGSHFGAFKMKRKNGVIAEVKPFDLDKYPTDMINGIRGM 81
Query: 74 TGNENKLQS-MKR 85
N ++++ M R
Sbjct: 82 VYNPSRVRYPMVR 94
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 24.9 bits (55), Expect = 9.9
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 13 QHSILFPRVGVEQAGKYKVVLDS 35
S+LF V Y + ++
Sbjct: 339 NRSLLFTGVRA---NSYSRLENA 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0501 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,934,729
Number of extensions: 98577
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 11
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)