RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9010
         (131 letters)



>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme
          {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 60.2 bits (146), Expect = 1e-13
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
          R G+ Q GK++ +L++D  H+ G N  + GTV  +     + R++S+ L LP    
Sbjct: 44 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLPPLAT 98


>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.4 bits (50), Expect = 4.6
 Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 52 YETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQ 88
           + YP   ++  + I   +P+++        + RY  
Sbjct: 27 LQQYPRGSSDCWDKIARCVPSKSKE----DCIARYKL 59


>d1hdfa_ b.11.1.1 (A:) Spherulin 3a (S3a) {Physarum polycephalum
          [TaxId: 5791]}
          Length = 100

 Score = 23.8 bits (51), Expect = 5.7
 Identities = 7/44 (15%), Positives = 15/44 (34%)

Query: 25 QAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKL 68
             K +V L    +  G   ++             N+  +S+K+
Sbjct: 9  NPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKV 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,215
Number of extensions: 19521
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 9
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)