BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9020
(1105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 23/239 (9%)
Query: 759 NLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIY--NTKFDI 816
N+WI K A ++G GI + + +++ I + V+QKY+E+PLL+ + KFDI
Sbjct: 145 NVWIAKSSAGAKGEGILISSEASELLDFI---DEQGQVHVIQKYLEKPLLLEPGHRKFDI 201
Query: 817 RQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR 876
R W LV Y +++Y+E LR S+ Y+ N + + ++TN+ IQ +Y
Sbjct: 202 RSWVLVDHLY--NIYLYREGVLRTSSEPYNSANFQDK---TCHLTNHCIQKEYSKNYGRY 256
Query: 877 HLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRK---NCFE 933
+E ++ F YL + + I +K I L+ + + + F+
Sbjct: 257 EEGNEMFFE--EFNQYLMD-ALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQ 313
Query: 934 LYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRREDKMADTG 992
L+G DFM+ + WLIE+N P A + + A LC +++ I V +ADTG
Sbjct: 314 LFGFDFMVDEELKVWLIEVNGAP--ACAQKLYAELCQGIVDVAISSVF-----PLADTG 365
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Query: 759 NLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIY--NTKFDI 816
N+WI K + ++G GI + D + + + V+QKY+E PLL+ + KFDI
Sbjct: 148 NVWIAKSSSGAKGEGILIS---SDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDI 204
Query: 817 RQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR 876
R W LV + Y +++Y+E LR S+ YS N + +++++TN+ IQ K + N R
Sbjct: 205 RSWVLVDNQY--NIYLYREGVLRTSSEPYSDTNFQD---MTSHLTNHCIQ-KEHSKNYGR 258
Query: 877 HLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRK---NCFE 933
+ M+ F YL T ++ + I +K+ I L + + + + F+
Sbjct: 259 YEEGNEMF-FEEFNQYLVTSLNINL-ENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQ 316
Query: 934 LYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRREDKMADT 991
L+G DFM+ +N WLIE+N P A + + A LC +++ I V E+ T
Sbjct: 317 LFGFDFMVDKNLKVWLIEVNGAP--ACAQKLYAELCKGIVDLAISSVFPLNEENHKPT 372
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 820 FLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR--- 876
F + + L+ W+ YL + + L + + HL N +T++ I +N +R
Sbjct: 227 FNIQHSKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASL 286
Query: 877 HLPDENMWDCYSFQAYLRTMGVADVW 902
HLP ++ Y ++ L +G+ V+
Sbjct: 287 HLPKLSITGTYDLKSVLGQLGITKVF 312
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 245 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 304
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 305 GTYDLKSVLGQLGITKVF 322
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 235 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 294
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 295 GTYDLKSVLGQLGITKVF 312
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 215 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 274
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 275 GTYDLKSVLGQLGITKVF 292
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 245 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 304
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 305 GTYDLKSVLGQLGITKVF 322
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 265 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 324
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 325 GTYDLKSVLGQLGITKVF 342
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 224 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 283
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 284 GTYDLKSVLGQLGITKVF 301
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 212 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 271
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 272 GTYDLKSVLGQLGITKVF 289
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR---HLPDENMW 884
L+ W+ YL + + L + + HL N +T++ I +N +R HLP ++
Sbjct: 216 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSIT 275
Query: 885 DCYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 276 GTYDLKSVLGQLGITKVF 293
>pdb|1QMB|A Chain A, Cleaved Alpha-1-Antitrypsin Polymer
Length = 326
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 828 LTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR--HLPDENMWD 885
L+ W+ YL + + L + + HL N +T++ I +N R HLP ++
Sbjct: 210 LSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENDRRSASLHLPKLSITG 269
Query: 886 CYSFQAYLRTMGVADVW 902
Y ++ L +G+ V+
Sbjct: 270 TYDLKSVLGQLGITKVF 286
>pdb|1PRT|B Chain B, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|H Chain H, The Crystal Structure Of Pertussis Toxin
pdb|1PTO|B Chain B, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 196
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 655 KYWSKSAKRERSFPLKPIRSVSVKS--SKQEQGFSFNDCTSEVYEL 698
KYWS ++ + L + +SV+ SK+EQ + + D T E Y L
Sbjct: 138 KYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYAL 183
>pdb|1PTO|H Chain H, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 198
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 655 KYWSKSAKRERSFPLKPIRSVSVKS--SKQEQGFSFNDCTSEVYEL 698
KYWS ++ + L + +SV+ SK+EQ + + D T E Y L
Sbjct: 140 KYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYAL 185
>pdb|1BCP|B Chain B, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|H Chain H, Binary Complex Of Pertussis Toxin And Atp
Length = 199
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 655 KYWSKSAKRERSFPLKPIRSVSVKS--SKQEQGFSFNDCTSEVYEL 698
KYWS ++ + L + +SV+ SK+EQ + + D T E Y L
Sbjct: 141 KYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYAL 186
>pdb|3A3D|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3D|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (dacb)
From Haemophilus Influenzae
pdb|3A3E|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3E|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Novel Beta-
Lactam (Cmv)
pdb|3A3F|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3F|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae,Complexed With Novel Beta-
Lactam (Fmz)
pdb|3A3I|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
pdb|3A3I|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 (Dacb)
From Haemophilus Influenzae, Complexed With Ampicillin
(Aix)
Length = 453
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 622 QTISPSQPYMGQNLTLRGFKMLPDLSPKLVRKSKYWSKSA----------KRERSFPLKP 671
+ + P +P GQ L K LPDL K+++KS + KR SF L
Sbjct: 252 KVLLPQKPQQGQLLAKHLSKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLG- 310
Query: 672 IRSVSVKSSKQEQGFSFND 690
+++VKS Q+QG F +
Sbjct: 311 --TLAVKSILQKQGIRFGN 327
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 820 FLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR--- 876
F + A L+ W+ YL + + L + + HL N +T++ I +N +R
Sbjct: 212 FNIQHAKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASL 271
Query: 877 HLPDENMWDCYSFQAYLRTMGVADVW 902
HLP ++ Y ++ L +G+ V+
Sbjct: 272 HLPKLSITGTYDLKSVLGQLGITKVF 297
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 820 FLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR--- 876
F + A L+ W+ YL + + L + + HL N +T++ I +N +R
Sbjct: 212 FNIQHAKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASL 271
Query: 877 HLPDENMWDCYSFQAYLRTMGVADVW 902
HLP ++ Y ++ L +G+ V+
Sbjct: 272 HLPKLSITGTYDLKSVLGQLGITKVF 297
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 734 IYQCSKHTVEHTKKFW---PQMHLDGFRNLWIVKPGAKSRGRGIQVMYK-LEDIIQKITA 789
IY KH +++ K P+ +D ++ + + ++ + K +E+ + KITA
Sbjct: 179 IYDKQKHFIDYYKSQIEENPEFIIDNIIKTYL----SNEYSKDLEALNKYIEESLNKITA 234
Query: 790 TNTNDPRFVVQKYIERPLL-IYNTKFDIRQWFLVTSAYPLTVWMYKE 835
N ND R ++K+ + L+ +YN + + +W L ++ L + M KE
Sbjct: 235 NNGNDIR-NLEKFADEDLVRLYNQEL-VERWNLAAASDILRISMLKE 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,167,461
Number of Sequences: 62578
Number of extensions: 1402364
Number of successful extensions: 3241
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3210
Number of HSP's gapped (non-prelim): 37
length of query: 1105
length of database: 14,973,337
effective HSP length: 109
effective length of query: 996
effective length of database: 8,152,335
effective search space: 8119725660
effective search space used: 8119725660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)