Query psy9020
Match_columns 1105
No_of_seqs 344 out of 1248
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 16:59:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 4.5E-48 9.7E-53 412.9 12.8 217 758-985 65-289 (292)
2 KOG2157|consensus 100.0 1.3E-46 2.8E-51 429.9 19.0 276 734-1014 176-459 (497)
3 KOG2156|consensus 100.0 5.8E-39 1.3E-43 361.0 13.0 243 760-1036 307-564 (662)
4 PF14398 ATPgrasp_YheCD: YheC/ 99.9 8.5E-25 1.8E-29 234.2 21.1 218 659-963 1-240 (262)
5 KOG2158|consensus 99.9 3.7E-25 8.1E-30 248.0 8.4 205 759-980 227-448 (565)
6 KOG2155|consensus 99.8 8.6E-22 1.9E-26 219.8 8.3 215 739-979 393-617 (631)
7 PF07478 Dala_Dala_lig_C: D-al 99.1 1.5E-09 3.2E-14 113.5 16.7 142 761-965 36-184 (203)
8 PRK14568 vanB D-alanine--D-lac 99.1 1.7E-09 3.7E-14 120.0 17.3 169 760-981 167-341 (343)
9 PRK01966 ddl D-alanyl-alanine 99.0 3.7E-09 8.1E-14 116.9 16.2 143 761-964 165-309 (333)
10 PRK14571 D-alanyl-alanine synt 99.0 1.1E-08 2.4E-13 111.0 17.6 164 760-981 127-296 (299)
11 PRK10446 ribosomal protein S6 99.0 4.9E-09 1.1E-13 114.1 14.2 132 761-960 138-269 (300)
12 PRK14570 D-alanyl-alanine synt 99.0 1.1E-08 2.5E-13 115.3 16.8 171 761-985 174-351 (364)
13 PRK01372 ddl D-alanine--D-alan 98.9 3.7E-08 8E-13 106.3 18.6 161 761-982 136-302 (304)
14 TIGR01205 D_ala_D_alaTIGR D-al 98.9 3.4E-08 7.5E-13 106.9 17.6 143 761-963 149-292 (315)
15 PRK14569 D-alanyl-alanine synt 98.9 3E-08 6.5E-13 108.2 17.1 140 761-964 133-273 (296)
16 PRK14572 D-alanyl-alanine synt 98.9 6.8E-08 1.5E-12 107.7 17.6 150 761-965 174-324 (347)
17 PF08443 RimK: RimK-like ATP-g 98.8 2.5E-08 5.5E-13 102.2 12.5 133 761-961 42-174 (190)
18 TIGR00768 rimK_fam alpha-L-glu 98.8 2.6E-08 5.6E-13 104.8 12.1 131 761-960 126-260 (277)
19 COG0189 RimK Glutathione synth 98.8 9.6E-08 2.1E-12 106.6 14.2 134 761-960 158-293 (318)
20 PF13535 ATP-grasp_4: ATP-gras 98.7 7.3E-08 1.6E-12 94.9 11.7 134 761-957 42-180 (184)
21 TIGR02291 rimK_rel_E_lig alpha 98.7 1E-07 2.2E-12 106.6 12.0 44 907-959 230-273 (317)
22 TIGR02144 LysX_arch Lysine bio 98.7 2.3E-07 4.9E-12 98.8 13.3 130 761-960 125-258 (280)
23 PRK14573 bifunctional D-alanyl 98.6 8.2E-07 1.8E-11 109.2 17.5 172 761-984 613-790 (809)
24 PRK05246 glutathione synthetas 98.4 1.7E-06 3.7E-11 95.5 12.3 90 730-843 135-229 (316)
25 COG1181 DdlA D-alanine-D-alani 98.4 2.7E-06 5.9E-11 95.2 13.5 141 759-964 143-294 (317)
26 PF14397 ATPgrasp_ST: Sugar-tr 98.4 4.8E-06 1E-10 91.7 15.1 170 759-960 74-264 (285)
27 PF02655 ATP-grasp_3: ATP-gras 98.4 1.2E-06 2.6E-11 88.1 8.7 48 757-816 30-77 (161)
28 PLN02257 phosphoribosylamine-- 98.3 1.5E-05 3.2E-10 92.5 17.5 53 930-982 263-316 (434)
29 TIGR03103 trio_acet_GNAT GNAT- 98.3 7.6E-06 1.6E-10 97.4 14.9 164 761-961 334-527 (547)
30 PRK13789 phosphoribosylamine-- 98.3 2.4E-05 5.2E-10 90.5 17.6 52 930-981 269-320 (426)
31 PRK12767 carbamoyl phosphate s 98.3 1.9E-05 4.1E-10 86.1 15.8 51 760-820 150-200 (326)
32 TIGR01161 purK phosphoribosyla 98.2 3.1E-05 6.7E-10 86.3 17.3 155 761-983 136-291 (352)
33 PLN02941 inositol-tetrakisphos 98.2 9.2E-06 2E-10 91.5 13.0 145 761-962 155-310 (328)
34 TIGR01142 purT phosphoribosylg 98.2 3.5E-05 7.6E-10 86.0 15.8 44 761-804 139-186 (380)
35 PRK00885 phosphoribosylamine-- 98.2 5.5E-05 1.2E-09 86.3 17.7 53 761-819 140-198 (420)
36 PRK07206 hypothetical protein; 98.2 2.7E-05 5.9E-10 88.1 14.8 54 760-819 148-208 (416)
37 TIGR00877 purD phosphoribosyla 98.1 5.3E-05 1.1E-09 86.2 15.5 52 761-818 143-199 (423)
38 PRK13790 phosphoribosylamine-- 98.1 7.9E-05 1.7E-09 84.7 16.9 54 761-820 105-160 (379)
39 PRK06019 phosphoribosylaminoim 98.1 6.5E-05 1.4E-09 84.9 15.4 155 761-983 138-293 (372)
40 TIGR00514 accC acetyl-CoA carb 98.0 6.9E-05 1.5E-09 86.4 15.0 157 761-982 155-318 (449)
41 PF02955 GSH-S_ATP: Prokaryoti 98.0 3.5E-05 7.6E-10 80.0 10.9 95 726-844 8-106 (173)
42 PRK13278 purP 5-formaminoimida 98.0 8.1E-05 1.8E-09 84.9 14.4 150 761-956 152-312 (358)
43 PRK14016 cyanophycin synthetas 98.0 7.2E-05 1.6E-09 91.9 14.9 53 761-821 252-305 (727)
44 PRK08591 acetyl-CoA carboxylas 98.0 0.0001 2.2E-09 84.6 14.9 157 761-982 155-318 (451)
45 TIGR01435 glu_cys_lig_rel glut 98.0 6.4E-05 1.4E-09 92.4 13.3 164 761-959 514-715 (737)
46 PRK06395 phosphoribosylamine-- 97.9 0.00047 1E-08 80.1 19.8 53 761-819 144-200 (435)
47 PRK05586 biotin carboxylase; V 97.9 0.00021 4.5E-09 82.7 16.7 158 761-983 155-319 (447)
48 PRK06524 biotin carboxylase-li 97.9 0.00016 3.6E-09 85.4 15.8 53 761-820 184-236 (493)
49 PRK06111 acetyl-CoA carboxylas 97.9 0.00015 3.3E-09 83.0 15.1 45 761-805 155-205 (450)
50 PRK08462 biotin carboxylase; V 97.9 0.00016 3.4E-09 83.3 14.8 45 761-805 157-207 (445)
51 PRK02471 bifunctional glutamat 97.9 0.00018 3.8E-09 89.0 15.4 53 761-821 527-582 (752)
52 PRK12458 glutathione synthetas 97.9 0.00013 2.7E-09 82.3 13.0 52 761-821 165-221 (338)
53 TIGR01235 pyruv_carbox pyruvat 97.9 9.4E-05 2E-09 94.7 13.0 157 761-982 155-318 (1143)
54 PRK08463 acetyl-CoA carboxylas 97.9 0.00015 3.2E-09 84.9 13.8 158 761-983 155-319 (478)
55 PRK12833 acetyl-CoA carboxylas 97.9 0.00018 3.8E-09 84.0 14.1 157 761-983 158-322 (467)
56 PRK08654 pyruvate carboxylase 97.8 0.00034 7.3E-09 82.7 16.4 45 761-805 155-205 (499)
57 PLN02948 phosphoribosylaminoim 97.8 0.00028 6.2E-09 84.8 15.9 158 761-984 159-317 (577)
58 PRK05294 carB carbamoyl phosph 97.8 0.00039 8.5E-09 88.7 17.4 157 761-983 707-867 (1066)
59 TIGR01380 glut_syn glutathione 97.8 0.00015 3.2E-09 80.6 12.0 54 761-821 156-213 (312)
60 PRK09288 purT phosphoribosylgl 97.8 0.00031 6.7E-09 79.0 14.5 44 761-804 152-199 (395)
61 PRK06849 hypothetical protein; 97.8 0.00019 4.1E-09 81.1 12.8 51 760-819 154-204 (389)
62 PRK02186 argininosuccinate lya 97.8 0.0004 8.6E-09 87.1 16.5 54 761-820 145-199 (887)
63 PLN02735 carbamoyl-phosphate s 97.7 0.00077 1.7E-08 86.5 18.6 160 761-983 740-902 (1102)
64 PF01071 GARS_A: Phosphoribosy 97.7 0.00061 1.3E-08 72.2 14.4 92 700-819 2-99 (194)
65 TIGR01369 CPSaseII_lrg carbamo 97.7 0.001 2.3E-08 84.9 18.4 159 761-984 707-868 (1050)
66 PRK07178 pyruvate carboxylase 97.6 0.00076 1.6E-08 78.9 14.9 158 761-983 154-318 (472)
67 PRK12999 pyruvate carboxylase; 97.6 0.00053 1.1E-08 88.2 14.1 157 761-982 159-322 (1146)
68 PRK13277 5-formaminoimidazole- 97.6 0.001 2.2E-08 76.3 14.7 148 759-954 153-317 (366)
69 PRK12815 carB carbamoyl phosph 97.6 0.0012 2.6E-08 84.5 17.1 52 761-818 708-759 (1068)
70 COG1821 Predicted ATP-utilizin 97.5 0.00022 4.8E-09 78.1 7.7 29 929-959 231-259 (307)
71 TIGR02068 cya_phycin_syn cyano 97.5 0.00035 7.5E-09 87.5 10.2 53 761-821 251-304 (864)
72 PLN02735 carbamoyl-phosphate s 97.5 0.0017 3.7E-08 83.4 15.7 157 761-983 183-347 (1102)
73 PRK05784 phosphoribosylamine-- 97.4 0.006 1.3E-07 72.4 18.9 68 910-980 266-334 (486)
74 TIGR01369 CPSaseII_lrg carbamo 97.2 0.0032 6.9E-08 80.6 13.6 44 761-804 165-210 (1050)
75 PF02786 CPSase_L_D2: Carbamoy 97.1 0.015 3.2E-07 62.1 15.6 158 761-983 41-206 (211)
76 PRK05294 carB carbamoyl phosph 97.1 0.0034 7.5E-08 80.4 12.7 44 761-804 166-211 (1066)
77 COG0439 AccC Biotin carboxylas 97.0 0.0067 1.5E-07 71.5 12.7 46 761-806 155-206 (449)
78 COG4770 Acetyl/propionyl-CoA c 96.9 0.013 2.9E-07 70.2 14.4 157 761-982 155-318 (645)
79 TIGR02712 urea_carbox urea car 96.9 0.01 2.2E-07 77.2 14.6 45 761-805 153-203 (1201)
80 COG0151 PurD Phosphoribosylami 96.9 0.024 5.1E-07 66.3 15.9 220 635-977 83-310 (428)
81 PRK12815 carB carbamoyl phosph 96.8 0.01 2.2E-07 76.4 12.9 44 761-804 166-211 (1068)
82 PF02222 ATP-grasp: ATP-grasp 96.5 0.071 1.5E-06 55.6 14.7 126 761-959 31-164 (172)
83 PF15632 ATPgrasp_Ter: ATP-gra 96.0 0.11 2.3E-06 59.5 14.3 30 930-959 255-284 (329)
84 KOG0238|consensus 95.3 0.23 4.9E-06 59.5 13.4 157 761-982 151-314 (670)
85 KOG0369|consensus 94.2 0.18 3.9E-06 61.7 9.2 48 760-807 186-239 (1176)
86 COG1038 PycA Pyruvate carboxyl 93.8 0.25 5.5E-06 61.7 9.5 48 760-807 160-213 (1149)
87 PF14403 CP_ATPgrasp_2: Circul 92.6 0.52 1.1E-05 56.1 9.5 78 758-843 338-426 (445)
88 COG0027 PurT Formate-dependent 91.8 2.1 4.7E-05 49.3 12.7 52 761-821 152-207 (394)
89 COG2232 Predicted ATP-dependen 91.5 0.81 1.7E-05 52.8 9.0 42 909-959 236-277 (389)
90 PF02750 Synapsin_C: Synapsin, 88.8 2.4 5.1E-05 46.0 9.3 44 930-973 152-197 (203)
91 TIGR02049 gshA_ferroox glutama 86.5 1.9 4.1E-05 50.5 7.5 112 734-858 234-359 (403)
92 COG0458 CarB Carbamoylphosphat 85.8 9.8 0.00021 45.1 12.9 44 761-804 153-198 (400)
93 PF03133 TTL: Tubulin-tyrosine 85.2 0.28 6E-06 53.9 0.1 65 419-500 5-72 (292)
94 PF08886 GshA: Glutamate-cyste 80.8 3.5 7.5E-05 48.5 6.6 116 734-858 237-362 (404)
95 COG2308 Uncharacterized conser 77.2 2.7 5.9E-05 50.1 4.4 77 761-843 368-456 (488)
96 KOG3895|consensus 73.8 13 0.00029 43.6 8.5 54 930-983 341-396 (488)
97 KOG2155|consensus 72.9 1.9 4.2E-05 51.2 1.8 72 400-488 331-406 (631)
98 COG1759 5-formaminoimidazole-4 72.1 35 0.00075 39.9 11.2 166 740-954 130-313 (361)
99 PF04174 CP_ATPgrasp_1: A circ 71.7 4.7 0.0001 46.6 4.5 29 930-958 66-95 (330)
100 PF05770 Ins134_P3_kin: Inosit 68.8 15 0.00032 42.3 7.6 38 931-968 262-301 (307)
101 PHA02117 glutathionylspermidin 67.1 7.4 0.00016 46.1 4.9 59 760-821 309-367 (397)
102 PRK10507 bifunctional glutathi 65.2 16 0.00035 45.6 7.4 86 733-821 493-588 (619)
103 KOG2158|consensus 58.0 2.5 5.4E-05 50.7 -1.0 53 930-983 13-65 (565)
104 COG0754 Gsp Glutathionylspermi 52.2 8.3 0.00018 45.2 1.9 73 732-806 260-343 (387)
105 KOG2156|consensus 51.1 5.9 0.00013 48.3 0.5 83 403-501 228-313 (662)
106 KOG0237|consensus 49.5 6.8E+02 0.015 32.1 17.1 79 700-804 108-196 (788)
107 KOG2983|consensus 48.8 82 0.0018 36.2 8.7 63 718-788 72-136 (334)
108 COG5340 Predicted transcriptio 48.3 33 0.00071 38.5 5.5 66 333-398 13-94 (269)
109 PF07065 D123: D123; InterPro 38.7 1.3E+02 0.0028 34.7 8.6 26 932-957 214-240 (299)
110 KOG2157|consensus 30.9 37 0.00079 41.6 2.9 113 351-499 78-205 (497)
111 TIGR01016 sucCoAbeta succinyl- 26.6 2E+02 0.0043 33.6 7.7 55 761-820 43-114 (386)
112 PRK00696 sucC succinyl-CoA syn 26.5 2.4E+02 0.0051 33.0 8.3 54 761-819 43-113 (388)
113 PF01963 TraB: TraB family; I 25.7 98 0.0021 33.2 4.7 43 327-369 206-254 (259)
114 PF04174 CP_ATPgrasp_1: A circ 24.2 37 0.00079 39.6 1.2 38 760-800 289-330 (330)
115 KOG0368|consensus 22.7 5.3E+02 0.011 36.3 10.8 28 761-788 242-269 (2196)
116 PHA02117 glutathionylspermidin 22.6 72 0.0016 38.1 3.2 28 933-960 106-135 (397)
117 PF14305 ATPgrasp_TupA: TupA-l 21.0 1.2E+03 0.025 26.0 12.9 30 930-960 193-222 (239)
118 PF04556 DpnII: DpnII restrict 20.8 79 0.0017 36.4 2.9 23 935-957 196-218 (286)
119 PF08497 Radical_SAM_N: Radica 20.5 53 0.0011 38.0 1.5 43 358-400 3-45 (302)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=4.5e-48 Score=412.90 Aligned_cols=217 Identities=43% Similarity=0.810 Sum_probs=124.5
Q ss_pred ccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 758 RNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 758 ~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
.++||+||++++||+||.++++++++.+.. ......|||||||++||||+|||||||+|||||+.+||++|+|++||
T Consensus 65 ~~~wI~KP~~~~rG~GI~l~~~~~~i~~~~---~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~ 141 (292)
T PF03133_consen 65 KNLWIVKPSNGSRGRGIKLFNNLEQILRFS---KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGY 141 (292)
T ss_dssp ---EEEEES-------EEEES-HHHHHCCH---CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--E
T ss_pred CCEEEEeccccCCCCCceecCCHHHHHHHh---hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCce
Confidence 489999999999999999999999987541 23467899999999999999999999999999999999999999999
Q ss_pred eeccccCCc--cCCC-CcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 838 LRFCSQNYS--LVNM-HESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 838 VRFASq~Ys--l~NL-D~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
+|||+.+|+ ..+. +.++|||| +++|++............+++|++..|+.+++. +.. | +.++++|..++
T Consensus 142 vR~~~~~Y~~~~~~~~~~~~HlTN----~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~--~-~~~~~~i~~~i 213 (292)
T PF03133_consen 142 VRFASEPYDPDLDDLSDRFAHLTN----YSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE-GID--W-EKIWEKICDII 213 (292)
T ss_dssp EEE-SS----------------------------------------EEEHHHHHHHCTTTS-SS---S-TTTCHHHHHHH
T ss_pred EEeccceeeccccccccccccccc----cccccccccccccccccccccchhhhhhhhccc-CCC--c-ccchhhhhHHH
Confidence 999999999 4444 57899999 999998652223344567889999999999987 321 1 22444455555
Q ss_pred HHHHHHh-----hhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcCCC
Q psy9020 915 VGSLLAS-----QDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRRE 985 (1105)
Q Consensus 915 i~tLlAa-----qd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr~~ 985 (1105)
+.++.++ ...+..+.+|||+||+|||||++++|||||||++|++..+++++..++.+|++|+|+++++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v~~~~ 289 (292)
T PF03133_consen 214 IKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVVDPDK 289 (292)
T ss_dssp HHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS----
T ss_pred HHHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEeCCCC
Confidence 5555444 5677888999999999999999999999999999999999999999999999999999888654
No 2
>KOG2157|consensus
Probab=100.00 E-value=1.3e-46 Score=429.94 Aligned_cols=276 Identities=38% Similarity=0.590 Sum_probs=254.1
Q ss_pred HhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhh-----cCCCCCceEEeecccCCcc
Q psy9020 734 IYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITA-----TNTNDPRFVVQKYIERPLL 808 (1105)
Q Consensus 734 v~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~-----~~~k~~~yVVQKYIEnPLL 808 (1105)
+..| ..++.+.++..++++.++.+++||+||++.+||+||++++.++++.++... ....+..|+||+||++|||
T Consensus 176 ~~~~-~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~pll 254 (497)
T KOG2157|consen 176 VETT-FVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLL 254 (497)
T ss_pred cchh-hhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccc
Confidence 4556 788999999999999999999999999999999999999999999988742 2344678999999999999
Q ss_pred cCCeEEEEEEEEEEeecCCcEEEEEccceeeccccCCc-cCCCC-cccccccccccchhhhcccCCC-CCCCCCCCCccC
Q psy9020 809 IYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYS-LVNMH-ESVHLSNNITNNAIQCKYQNGN-RHRHLPDENMWD 885 (1105)
Q Consensus 809 IdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~Ys-l~NLD-~siHLTN~ltN~SIQK~~~n~~-r~p~lp~gnmWS 885 (1105)
|+|+|||||+||+||.++||.+|.|++|++|||+++|. +.+++ .++|||| ++|||++.++. .++..+.+++|+
T Consensus 255 i~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~~~nl~n~~~HLtN----~siqK~~~~~~~~~s~~~~~~~w~ 330 (497)
T KOG2157|consen 255 IGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGPLVNLQNMSVHLTN----VSIQKLYPNYCHLSSLLSESCKWT 330 (497)
T ss_pred cCCceeeeeEEEEeecccchhheeeccceEEEEeccCcchhhhcccchhhhc----cccccCCCCcccccccccCCCccc
Confidence 99999999999999999999999999999999999999 88887 8999999 99999999988 455666899999
Q ss_pred hHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhH
Q psy9020 886 CYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVT 965 (1105)
Q Consensus 886 le~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd 965 (1105)
+..|..||+..+.+..|...+++.|...|+.++.+++..+....+|||+||+|||||++++|||||||++|+|++++..+
T Consensus 331 ~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d 410 (497)
T KOG2157|consen 331 LNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVPSLANCFELYGFDFLIDEALKPWLIEINASPDLTQTTKND 410 (497)
T ss_pred HHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccccccchhhhhCcceeecCCCCeEEEEeecCCcccccchhh
Confidence 99999999998888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCccCCCCCeeEEeecCCCCCCCCCCccee
Q psy9020 966 ARLCAQVLEDVIKVVVDRREDKMADTGMFELVYKQTISPSQPYMGQNLT 1014 (1105)
Q Consensus 966 ~~Lk~qVLeDtLkVVVDr~~d~~~dtG~FELIYkQ~~~~~p~~~G~~L~ 1014 (1105)
+.+|..++.|++++++++..++++..|.|++++.......+.+.|.++-
T Consensus 411 ~~l~~~l~~d~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (497)
T KOG2157|consen 411 ARLKSKLIDDVLKVVVDPRLDPNQAWGVDELASLFNNLTQQGSNGNDEA 459 (497)
T ss_pred hHHHHHHHHHhhccccCcccccccccCCCcchhhccccceecccccCcc
Confidence 9999999999999999999999999999999999988776666565333
No 3
>KOG2156|consensus
Probab=100.00 E-value=5.8e-39 Score=361.04 Aligned_cols=243 Identities=30% Similarity=0.561 Sum_probs=200.3
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
.|||||.+.+||.||.+++++.++ ++++..|||+||++|+||+|.|||+|+||+||+++||+||+|++||+|
T Consensus 307 ~wIVkppasaRg~gIrv~~kw~q~--------pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~R 378 (662)
T KOG2156|consen 307 LWIVKPPASARGIGIRVINKWSQF--------PKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVR 378 (662)
T ss_pred cEEecCcccccCcceEeccchhhC--------CCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceee
Confidence 499999999999999999988764 567889999999999999999999999999999999999999999999
Q ss_pred ccccCCccC---CCCcccccccccccchhhhcccCCC--CCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 840 FCSQNYSLV---NMHESVHLSNNITNNAIQCKYQNGN--RHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 840 FASq~Ysl~---NLD~siHLTN~ltN~SIQK~~~n~~--r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
||+.+|+.. +.|+++|||| |++++... +. .+-....|.+|++..+..+|..+|.+. +.||++|+.+|
T Consensus 379 FasvkYsp~~a~~~dKymhltn----Ys~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qGvdt---~kIW~qir~iV 450 (662)
T KOG2156|consen 379 FASVKYSPFDANNVDKYMHLTN----YSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQGVDT---DKIWEQIRNIV 450 (662)
T ss_pred eccccCCcccccccceeEEecc----ccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhcCCCH---HHHHHHHHHHH
Confidence 999999864 5578999999 88888654 22 112234688999999999999999865 58999999999
Q ss_pred HHHHHHhhhcc--------CCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcCCCC
Q psy9020 915 VGSLLASQDSF--------DHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRRED 986 (1105)
Q Consensus 915 i~tLlAaqd~l--------~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr~~d 986 (1105)
+.++.+.+..+ .....||||+||||+||++++|||||||.+|+++..++++..++..|+.+++.++.-+-..
T Consensus 451 ~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~ 530 (662)
T KOG2156|consen 451 IKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPP 530 (662)
T ss_pred HHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCC
Confidence 99999876543 4667899999999999999999999999999999999999999999999999986332210
Q ss_pred ccCCCCCeeEEeecCCCCCCCC-CCcceeeeeeeccc-CCCchhhccccccc
Q psy9020 987 KMADTGMFELVYKQTISPSQPY-MGQNLTLRGFKMLP-DLSPKLVRKSKYWS 1036 (1105)
Q Consensus 987 ~~~dtG~FELIYkQ~~~~~p~~-~G~~L~v~G~~i~~-~~~~~l~rk~~~~~ 1036 (1105)
.|.. .+..+.+-+++|+. .+..+...|..+|.
T Consensus 531 ------------------~~s~~~~a~~~~st~ri~~~~~~~e~l~K~~~~t 564 (662)
T KOG2156|consen 531 ------------------KPSTDSLAELSLSTKRITTDKLTREELIKHAAHT 564 (662)
T ss_pred ------------------CccchhhhhhCCCccccccccccHHHHHHHHHHh
Confidence 0121 34455555566663 35555555565554
No 4
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.93 E-value=8.5e-25 Score=234.17 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=157.5
Q ss_pred hhhhccccCCCCccccccccccccccCccccccchhhHHHHHHHHHHHhhhcCCCCCCchhhHhhhhhhhhhHHHHhhch
Q psy9020 659 KSAKRERSFPLKPIRSVSVKSSKQEQGFSFNDCTSEVYELISKLQVQLMQSRHNSPADKEDEEKQENYMTSLDKAIYQCS 738 (1105)
Q Consensus 659 ~~~~rk~~iP~~~V~~n~l~sr~~e~g~~f~~cKsevy~~I~~~fn~~~q~K~~vp~a~~de~~s~~Y~~~Lpeav~~cs 738 (1105)
|..++++++||+. .++ |+ ||++|+.| .......++||++..-..
T Consensus 1 ~~~k~~~~i~~~n------------~~~-~~--Kw~v~~~L---------------------~~~~~l~~~LP~T~~~~~ 44 (262)
T PF14398_consen 1 KRLKKQKGIPFFN------------PGF-FD--KWEVYKAL---------------------SRDPELRPYLPETELLTS 44 (262)
T ss_pred ChhHhcCCCEEeC------------CCC-CC--HHHHHHHH---------------------HcCCcchhhCCCceEcCC
Confidence 3566778888762 022 33 99999999 232334567999854333
Q ss_pred HHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEc----------------------ChHHHHHHHhhcCCCCCc
Q psy9020 739 KHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMY----------------------KLEDIIQKITATNTNDPR 796 (1105)
Q Consensus 739 ~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~----------------------sLeEIlk~l~~~~~k~~~ 796 (1105)
.+.|..|...++ ..++||..|++|+||+.+. +.+++..++... ...+.
T Consensus 45 ~~~l~~~L~~y~---------~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ 114 (262)
T PF14398_consen 45 FEDLREMLNKYK---------SVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-LGKRR 114 (262)
T ss_pred HHHHHHHHHHCC---------EEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-cCCCc
Confidence 577888888776 7999999999999998773 356677776543 34678
Q ss_pred eEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCC
Q psy9020 797 FVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR 876 (1105)
Q Consensus 797 yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p 876 (1105)
||||++|+. +.++||+||||+.|+.... ..|...+.++|+|.....+ || ...+
T Consensus 115 yIiQq~I~l-~~~~gr~fD~RvlvqK~~~---G~W~vtg~~~Rva~~~~iv---------TN----------~~~G---- 167 (262)
T PF14398_consen 115 YIIQQGIPL-ATYDGRPFDFRVLVQKNGS---GKWQVTGIVARVAKPGSIV---------TN----------LSQG---- 167 (262)
T ss_pred EEEeCCccc-cccCCCeEEEEEEEEECCC---CCEEEEEEEEEEcCCCCce---------ec----------cCCC----
Confidence 999999997 8899999999999987654 4699999999999985333 33 2222
Q ss_pred CCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCC
Q psy9020 877 HLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGP 956 (1105)
Q Consensus 877 ~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSP 956 (1105)
|..++ +.++|... .. ...+...|.+++..+..+....+. ..|.++|+||+||.+|++||||||+.|
T Consensus 168 ----G~~~~---~~~~l~~~---~~-~~~~~~~l~~~a~~ia~~le~~~~---~~~gElGiDl~iD~~g~iWliEvN~kP 233 (262)
T PF14398_consen 168 ----GTALP---FEEVLRQS---EE-AEKIREELEDLALEIAQALEKHFG---GHLGELGIDLGIDKNGKIWLIEVNSKP 233 (262)
T ss_pred ----ceecC---HHHHHHhh---hh-HHHHHHHHHHHHHHHHHHHHHhcC---CceeEEEEEEEEcCCCCEEEEEEeCCC
Confidence 22333 44444443 11 245666777777777777666664 238999999999999999999999999
Q ss_pred CCCcCCh
Q psy9020 957 CMAASTS 963 (1105)
Q Consensus 957 SLs~ST~ 963 (1105)
+......
T Consensus 234 ~~~~~~~ 240 (262)
T PF14398_consen 234 GKFDFRD 240 (262)
T ss_pred Ccchhhc
Confidence 9876554
No 5
>KOG2158|consensus
Probab=99.91 E-value=3.7e-25 Score=247.96 Aligned_cols=205 Identities=25% Similarity=0.431 Sum_probs=159.4
Q ss_pred cEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCccc-CCeEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 759 NLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLI-YNTKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 759 NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLI-dGRKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
.++|+||..|.+|.||.+++++.++-.+ ..-++|+||..|||| |+.|||+|+|.+++|.+||.||++++|+
T Consensus 227 rtfivkpDsgaqg~giylisDir~~g~~--------Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGl 298 (565)
T KOG2158|consen 227 RTFIVKPDSGAQGSGIYLISDIREKGEY--------QNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGL 298 (565)
T ss_pred ccEEECCCCCCCCcceeeechhhhhhHH--------HHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccch
Confidence 3899999999999999999776554332 236899999999999 9999999999999999999999999999
Q ss_pred eeccccCCccC---CCC-cccccccccccchhhhcccCCCCCC-CCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHH
Q psy9020 838 LRFCSQNYSLV---NMH-ESVHLSNNITNNAIQCKYQNGNRHR-HLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKD 912 (1105)
Q Consensus 838 VRFASq~Ysl~---NLD-~siHLTN~ltN~SIQK~~~n~~r~p-~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKe 912 (1105)
+|||+++|.-. |.+ .++|||| |+++++..++.... .-..|.+-.++.....|.+.|... ..+|..|+.
T Consensus 299 aRFcTeky~ePts~n~~~lymhlTn----Yslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s~gvdt---k~vwsDik~ 371 (565)
T KOG2158|consen 299 ARFCTEKYIEPTSANRSHLYMHLTN----YSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDSLGVDT---KFVWSDIKI 371 (565)
T ss_pred hhhhhccccCCCcccHHHHHHHHHH----hhhcCCCccccccCcccccchhHHHHHHHHHHHhcCchH---HHHHhhhhh
Confidence 99999999743 443 5799999 99999988876221 222344444555555666666642 235555788
Q ss_pred HHHHHHHHhhhc--------cC---CCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhh
Q psy9020 913 GIVGSLLASQDS--------FD---HRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVV 980 (1105)
Q Consensus 913 iIi~tLlAaqd~--------l~---~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVV 980 (1105)
+++.+..|.-+. +. ..+.||+++|||+|++.++.|.|+|||..|++....-++.+. -+|+++++++
T Consensus 372 v~iktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~v 448 (565)
T KOG2158|consen 372 VFIKTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRV 448 (565)
T ss_pred hhcchhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhh
Confidence 888877775432 22 357899999999999999999999999999999877665544 5666666654
No 6
>KOG2155|consensus
Probab=99.85 E-value=8.6e-22 Score=219.79 Aligned_cols=215 Identities=27% Similarity=0.413 Sum_probs=173.1
Q ss_pred HHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEE
Q psy9020 739 KHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQ 818 (1105)
Q Consensus 739 ~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRV 818 (1105)
...|.++.+++.+.+.+|.+|+||+||.+..||....+..++.+|++.+. .++-||||||++|+|..|-|||||.
T Consensus 393 ~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~E-----tgPKiv~kYIe~P~LFr~gKFDlRY 467 (631)
T KOG2155|consen 393 NTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIE-----TGPKIVCKYIERPLLFRNGKFDLRY 467 (631)
T ss_pred ccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHh-----cCchHHHHhcCCcceeecCccceEE
Confidence 34578888888889999999999999999999999999999999999886 3578999999999999888999999
Q ss_pred EEEEeecCCcEEEEEccceeeccccCCccCCCCcc-cccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhC
Q psy9020 819 WFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHES-VHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMG 897 (1105)
Q Consensus 819 YVLVTS~nPLrVWlYregyVRFASq~Ysl~NLD~s-iHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G 897 (1105)
.||+.|..||++|+|.-.++|||..+|++++++.+ .|+|- +||- .| . +...+++|..-+.+..
T Consensus 468 iVllrsi~Pl~~yvy~~FWiRfsnn~fsL~~f~dyEtHFTV--mNY~-~k-l------------~q~~ceeFi~~~ek~y 531 (631)
T KOG2155|consen 468 IVLLRSIAPLTAYVYNRFWIRFSNNEFSLSNFEDYETHFTV--MNYL-EK-L------------LQMKCEEFIGEFEKGY 531 (631)
T ss_pred EEEEccccchhhhheeheeeeecCCccchhhhhhhhhhhhh--hhHH-HH-H------------hhccHHHHHHHHhhcC
Confidence 99999999999999999999999999999999764 89885 3344 11 1 1224667777777666
Q ss_pred CchhhHhhhhhhHHHHHHHHHHHhhhc-----cCCCCCceeEEEEEEEe--ccC--CceEEEEeecCCCCCcCChhHHHH
Q psy9020 898 VADVWQKVIYPGMKDGIVGSLLASQDS-----FDHRKNCFELYGADFML--AQN--FVPWLIEINSGPCMAASTSVTARL 968 (1105)
Q Consensus 898 ~~~~Wed~I~pqIKeiIi~tLlAaqd~-----l~~rkncFELyG~DFML--DEd--gKPWLLEVNSSPSLs~ST~Vd~~L 968 (1105)
....|.+ +...|..++...+.++... +...+++..+||+|+|+ |.. .+|-|||||.+|++...+.-.
T Consensus 532 p~~pw~d-vq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYh--- 607 (631)
T KOG2155|consen 532 PCFPWED-VQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYH--- 607 (631)
T ss_pred CCCCcch-hhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcC---
Confidence 6667865 4566777777777766543 22457889999999999 766 899999999999998776433
Q ss_pred HHHHHHHHHHh
Q psy9020 969 CAQVLEDVIKV 979 (1105)
Q Consensus 969 k~qVLeDtLkV 979 (1105)
+....++|..
T Consensus 608 -pdFfnnVFst 617 (631)
T KOG2155|consen 608 -PDFFNNVFST 617 (631)
T ss_pred -hhHHHhHHHH
Confidence 3444555544
No 7
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.13 E-value=1.5e-09 Score=113.46 Aligned_cols=142 Identities=18% Similarity=0.297 Sum_probs=93.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEE-----EEEcc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTV-----WMYKE 835 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrV-----WlYre 835 (1105)
+|+||..++.+.||..+++.+++...+......+..++||+||. ||-|-+-++= .+...+ ..+..
T Consensus 36 ~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~vl~----~~~~~~~~~~ei~~~~ 105 (203)
T PF07478_consen 36 LFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVGVLG----NGEPRVLPPVEIVFPS 105 (203)
T ss_dssp EEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEEEEE----SSSTEEEEEEEEEESS
T ss_pred EEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEEEEe----cCCcccCceEEEEcCC
Confidence 99999999999999999999999888865555567899999995 8887766542 111222 22222
Q ss_pred ceeeccccCCccCCCCcccccccccccchhhhcccC--CCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHH
Q psy9020 836 SYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQN--GNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDG 913 (1105)
Q Consensus 836 gyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n--~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKei 913 (1105)
.+..+ ..+|.. ... .+ -.+......+..+|+++
T Consensus 106 ~~~d~-------------------------~~Ky~~~~~~~--------~~------------~~pa~l~~~~~~~i~~~ 140 (203)
T PF07478_consen 106 EFYDY-------------------------EAKYQPADSET--------EY------------IIPADLSEELQEKIKEI 140 (203)
T ss_dssp SEEEH-------------------------HHHHSGCCSCE--------EE------------ESS-SS-HHHHHHHHHH
T ss_pred Cceeh-------------------------hheeccCCCce--------EE------------EecCCCCHHHHHHHHHH
Confidence 22222 222210 000 00 00111223455678888
Q ss_pred HHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhH
Q psy9020 914 IVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVT 965 (1105)
Q Consensus 914 Ii~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd 965 (1105)
+..++.+. +|-..-++||.+|++|+||+||||+.|+|++.+.+.
T Consensus 141 a~~a~~~l--------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 141 AKKAFKAL--------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp HHHHHHHT--------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHH
T ss_pred HHHHHHHH--------cCCCceeEEEEeccCCceEEEeccCcccccCCCHHH
Confidence 88888776 788899999999999999999999999999877553
No 8
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.11 E-value=1.7e-09 Score=120.02 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=97.3
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-||+||..++.++||.++++.+++...+......+..+|||+||. |+.+.+-+ +..... +.+... ..++
T Consensus 167 P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E~sv~v--l~~~~~-~~~~~~--~~i~ 235 (343)
T PRK14568 167 PVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV------GSEVGCAV--LGNGAD-LVVGEV--DQIR 235 (343)
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC------CEEEEEEE--EcCCCC-cceecc--eEEe
Confidence 499999999999999999999998877754333356899999997 77665433 221111 111000 0011
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
....-|+.. ++.....+ .+. +. .-.+......+..+|++++..++.
T Consensus 236 ~~~~~~~~~-----------------~k~~~~~g------~~~--~~---------~~~Pa~l~~~~~~~i~~~a~~~~~ 281 (343)
T PRK14568 236 LSHGFFRIH-----------------QENEPEKG------SEN--ST---------IIVPADISAEERSRVQETAKAIYR 281 (343)
T ss_pred cCCCccchh-----------------hhhccccC------CCC--ee---------EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 111001100 00000000 000 00 000111223345567777777777
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhh
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVV 981 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVV 981 (1105)
+. +|.+..++||++|+++++||+|||+.|+|+..+.+.... .+.+++.++...+
T Consensus 282 ~L--------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~li~~a~ 341 (343)
T PRK14568 282 AL--------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRLVSLAL 341 (343)
T ss_pred Hh--------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 66 688999999999999999999999999999765432211 2355555555443
No 9
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.04 E-value=3.7e-09 Score=116.94 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=90.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEee--cCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTS--AYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS--~nPLrVWlYregyV 838 (1105)
||+||..++.|.||.++++.+++.+.+......+..++||+||+ |+ ++++-++... .-|.......+
T Consensus 165 ~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~~~~~~~~~ei~~~~--- 233 (333)
T PRK01966 165 VFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGNDPKASVPGEIVKPD--- 233 (333)
T ss_pred EEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECCCCeEcccEEEecCC---
Confidence 99999999999999999999998887754333457899999997 65 4555555321 01111111111
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
.- +....+|..+. .. .-.+......+..+|++++..++
T Consensus 234 ----~~------------------~d~~~ky~~~~--------~~------------~~~Pa~l~~~~~~~i~~~a~~~~ 271 (333)
T PRK01966 234 ----DF------------------YDYEAKYLDGS--------AE------------LIIPADLSEELTEKIRELAIKAF 271 (333)
T ss_pred ----ce------------------EcHHHccCCCC--------ce------------EEeCCCCCHHHHHHHHHHHHHHH
Confidence 00 11111111100 00 00011112334456677777777
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChh
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~V 964 (1105)
.+. +|-+..++||++|.+++|||||||+.|+|+..+-+
T Consensus 272 ~aL--------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 272 KAL--------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred HHh--------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 665 67788999999999999999999999999886543
No 10
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.00 E-value=1.1e-08 Score=111.03 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=95.8
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-||+||..++.|+||.++++.+++.+.+.........++||+||+ |+ ++++-|+....++ .++-..+ .+
T Consensus 127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~~-~vl~~~e--~~ 195 (299)
T PRK14571 127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKGF-EVLPILE--LR 195 (299)
T ss_pred CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCCe-eeeceEE--Ee
Confidence 399999999999999999999998777653222245799999996 65 6666665443221 1111000 00
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
....-|+ + ..++..+. .. .-.+....+.+..+|++++..++.
T Consensus 196 ~~~~~~~----------------~--~~k~~~g~--------~~------------~~~p~~l~~~~~~~i~~~a~~~~~ 237 (299)
T PRK14571 196 PKRRFYD----------------Y--VAKYTKGE--------TE------------FILPAPLNPEEERLVKETALKAFV 237 (299)
T ss_pred cCCCccc----------------c--ccccCCCC--------ee------------EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 0000000 0 00000000 00 000111122334556677766666
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhh
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVV 981 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVV 981 (1105)
+. ++.+..++||+++ +++||+||||..|+|+..+.+.... +..|++.+++..+
T Consensus 238 ~l--------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a~ 296 (299)
T PRK14571 238 EA--------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSAF 296 (299)
T ss_pred Hh--------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55 6778999999997 5799999999999999876543222 2356666655544
No 11
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.99 E-value=4.9e-09 Score=114.07 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
||+||..|+.|+||+++++.+++...+.........++||+||... .-.|+|+.|+- ..++. ++-|.
T Consensus 138 ~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~d~rv~vig--~~~~~------~~~r~ 204 (300)
T PRK10446 138 LVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGCDIRCLVVG--DEVVA------AIERR 204 (300)
T ss_pred EEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCceEEEEEEC--CEEEE------EEEEe
Confidence 9999999999999999998777665554321224579999999731 24799998762 11111 23343
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
+... ++ .+| ++ .++.. . ...+.+.+++++..++.+
T Consensus 205 ~~~~----~~-----~~n----~~------~g~~~---------~-----------------~~~l~~~~~~~a~~a~~a 239 (300)
T PRK10446 205 AKEG----DF-----RSN----LH------RGGAA---------S-----------------VASITPQEREIAIKAART 239 (300)
T ss_pred cCCC----ch-----hhe----ec------cCCee---------c-----------------cCCCCHHHHHHHHHHHHH
Confidence 3221 00 122 11 11100 0 001234466677666666
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
. ++. ..|+||++|+++ +|+||||+.|++..
T Consensus 240 l--------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~~ 269 (300)
T PRK10446 240 M--------ALD-VAGVDILRANRG-PLVMEVNASPGLEG 269 (300)
T ss_pred h--------CCC-EEEEEEEEcCCC-cEEEEEECCCChhh
Confidence 5 454 899999999988 99999999999964
No 12
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.97 E-value=1.1e-08 Score=115.35 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=105.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|.||.++++.+++...+......+..+|||+||. || ++++-|+-. ....++.-.+ +.+
T Consensus 174 viVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vlg~--~~~~v~~~~E--i~~ 241 (364)
T PRK14570 174 VIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVIGN--EQIKIFTPGE--IVV 241 (364)
T ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEECC--CCceEeeeEE--EEe
Confidence 89999999999999999999998887754333356799999997 65 456655521 1112221111 111
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
....| +++..+|.... ... . ....+....+.+..+|++++..++++
T Consensus 242 ~~~~f-----------------~dy~~Ky~~~~------~~~---~--------~~~~Pa~l~~e~~~~i~~~A~~~~~a 287 (364)
T PRK14570 242 QDFIF-----------------YDYDAKYSTIP------GNS---I--------VFNIPAHLDTKHLLDIKEYAFLTYKN 287 (364)
T ss_pred CCCCc-----------------cCHHHhcCCCC------CCc---e--------EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 11000 11111111000 000 0 00011112234556788888888887
Q ss_pred hhhccCCCCCceeEEEEEEEecc-CCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcCCC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQ-NFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDRRE 985 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr~~ 985 (1105)
. +|.++.++||++|. +++|||+|||+.|+|++.+.+.... +..|++.+++..++|..
T Consensus 288 L--------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~~ 351 (364)
T PRK14570 288 L--------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSYI 351 (364)
T ss_pred h--------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7 88999999999996 5999999999999999876543322 34677777777776543
No 13
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.94 E-value=3.7e-08 Score=106.33 Aligned_cols=161 Identities=18% Similarity=0.288 Sum_probs=91.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
||+||..++.|+||.++.+.+++.+.+.........++||+||. |+ ++++.|+- + ..+.++ ++
T Consensus 136 ~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--E~~v~vi~-~-~~~~~~-------~~ 198 (304)
T PRK01372 136 LVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------GR--ELTVAVLG-G-KALPVI-------EI 198 (304)
T ss_pred EEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------CE--EEEEEEEC-C-CccceE-------EE
Confidence 89999999999999999999988776643222346799999996 65 55665542 2 111111 11
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
.... . ... + ..++..+. .... .+......+..+|++++..++.+
T Consensus 199 ~~~~---~-------~~~----~--~~~~~~g~---------~~~~-----------~p~~~~~~~~~~l~~~a~~~~~~ 242 (304)
T PRK01372 199 VPAG---E-------FYD----Y--EAKYLAGG---------TQYI-----------CPAGLPAEIEAELQELALKAYRA 242 (304)
T ss_pred EecC---C-------EEe----e--eccccCCC---------eEEE-----------eCCCCCHHHHHHHHHHHHHHHHH
Confidence 1100 0 000 0 00000000 0000 00000122334456666666555
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhc
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVD 982 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVD 982 (1105)
. ++.+..++||++|.+|++|+||||..|++...+...... +.+++..++.-.+.
T Consensus 243 l--------g~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~~~~~~~~g~~~~~~~~~ii~~a~~ 302 (304)
T PRK01372 243 L--------GCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLVPMAARAAGISFSELVDRILEDALC 302 (304)
T ss_pred h--------CCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 4 444678999999999999999999999998765332111 23555555555444
No 14
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.92 E-value=3.4e-08 Score=106.88 Aligned_cols=143 Identities=22% Similarity=0.322 Sum_probs=87.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecC-CcEEEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAY-PLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~n-PLrVWlYregyVR 839 (1105)
+|+||..++.|+||.++.+.+++.+.+.........++||+||+ |+ ++++.++..... |... +.... .+
T Consensus 149 ~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--e~~v~vi~~~~~~~~~~-~~~~~-~~ 218 (315)
T TIGR01205 149 VIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------GR--ELEVSILGNEEALPIIE-IVPEI-EG 218 (315)
T ss_pred EEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------CE--EEEEEEECCCCccceEE-ecCCC-CC
Confidence 99999999999999999999998877643222346799999985 65 667666542210 1100 00000 00
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
+ |.. ..++..+. ...+ .+....+.+..+|++++..++.
T Consensus 219 ~----~~~------------------~~~~~~~~-------~~~~-------------~p~~l~~~~~~~i~~~a~~~~~ 256 (315)
T TIGR01205 219 F----YDY------------------EAKYLDGS-------TEYV-------------IPAPLDEELEEKIKELALKAYK 256 (315)
T ss_pred e----eCc------------------ccccCCCC-------eeEE-------------eCCCCCHHHHHHHHHHHHHHHH
Confidence 0 000 00000000 0000 0001123344556777777766
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCCh
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTS 963 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~ 963 (1105)
+. ++.+.+++||++|.+++||+||||..|++.+.+.
T Consensus 257 ~l--------g~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 257 AL--------GCRGLARVDFFLDEEGEIYLNEINTIPGMTAISL 292 (315)
T ss_pred Hh--------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccH
Confidence 65 4567899999999999999999999999998653
No 15
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.92 E-value=3e-08 Score=108.21 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=86.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcE-EEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLT-VWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLr-VWlYregyVR 839 (1105)
+|+||..++.|.||.++++.+++...+..... ...++||+||+ |+- +++-|+- + ..+. +++.
T Consensus 133 ~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-~~~~lvEefI~------G~E--~tv~vl~-~-~~~~~~~i~------ 195 (296)
T PRK14569 133 VAVKPSSGGSSIATFKVKSIQELKHAYEEASK-YGEVMIEQWVT------GKE--ITVAIVN-D-EVYSSVWIE------ 195 (296)
T ss_pred EEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-cCCEEEEcccc------cEE--EEEEEEC-C-cCcceEEEe------
Confidence 99999999999999999999998877754322 24799999995 765 4444442 1 1111 1111
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
....-|+.. .++.....+ ..| ......+..+|++++..++.
T Consensus 196 ~~~~~~~~~------------------~k~~~~~~~-~~P--------------------~~l~~~~~~~i~~~a~~~~~ 236 (296)
T PRK14569 196 PQNEFYDYE------------------SKYSGKSIY-HSP--------------------SGLCEQKELEVRQLAKKAYD 236 (296)
T ss_pred cCCCcCChh------------------hccCCCcEE-EeC--------------------CCCCHHHHHHHHHHHHHHHH
Confidence 000001000 000000000 000 00011233456777777776
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChh
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~V 964 (1105)
+. +|-+..++||++|.+++||+||||+.|+|+.++.+
T Consensus 237 ~L--------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 237 LL--------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred Hh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHH
Confidence 66 67899999999999999999999999999987543
No 16
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.86 E-value=6.8e-08 Score=107.73 Aligned_cols=150 Identities=12% Similarity=0.135 Sum_probs=89.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeec-CCcEEEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSA-YPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~-nPLrVWlYregyVR 839 (1105)
+|+||..++.+.||.++++.+++...+......+..+|||+||. |+.| ++-|+.... +-...+.+--.-++
T Consensus 174 vvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~E~--sv~vi~~~~~g~~~~~~l~~~ei~ 245 (347)
T PRK14572 174 QFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GTEV--SCGVLERYRGGKRNPIALPATEIV 245 (347)
T ss_pred EEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cEEE--EEEEEeCccCCCCCceecccEEEe
Confidence 99999999999999999999998877754333356799999996 7654 444443211 00000000000011
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
....-| ....+|..+. .. .-.+..+...+..+|++++..++.
T Consensus 246 ~~~~~~------------------d~~~ky~~~~---------~~-----------~~~Pa~l~~~~~~~i~~~a~~~~~ 287 (347)
T PRK14572 246 PGGEFF------------------DFESKYKQGG---------SE-----------EITPARISDQEMKRVQELAIRAHE 287 (347)
T ss_pred cCCCcc------------------CHHHccCCCC---------eE-----------EEECCCCCHHHHHHHHHHHHHHHH
Confidence 100000 0111111100 00 000112233455567777777776
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhH
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVT 965 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd 965 (1105)
+. +|.+..++||+++ ++.||+||||+.|+|+.++-+.
T Consensus 288 ~L--------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p 324 (347)
T PRK14572 288 SL--------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIP 324 (347)
T ss_pred Hh--------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHH
Confidence 66 6788999999997 5899999999999999876443
No 17
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.84 E-value=2.5e-08 Score=102.20 Aligned_cols=133 Identities=20% Similarity=0.317 Sum_probs=61.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
.|+||..|+.|+||.++++.+++...++.........++|+||+.+ .--|+|++|+-.. ... ++.|.
T Consensus 42 ~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~-----~g~d~Rv~Vig~~--vv~------a~~r~ 108 (190)
T PF08443_consen 42 VVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD-----GGRDLRVYVIGGK--VVG------AYRRS 108 (190)
T ss_dssp EEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S-----S---EEEEEETTE--EEE------EEE--
T ss_pred EEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC-----CCcEEEEEEECCE--EEE------EEEEe
Confidence 8999999999999999999888877765422335678999999952 1169999987211 111 13333
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
+... + ..+| .+ .++ . ...-.+-+++++++..++.+
T Consensus 109 ~~~~----d-----~r~n----~~------~g~-------------------------~-~~~~~l~~e~~~~a~~~~~~ 143 (190)
T PF08443_consen 109 SPEG----D-----FRTN----LS------RGG-------------------------K-VEPYDLPEEIKELALKAARA 143 (190)
T ss_dssp -------------------------------------------------------------EE----HHHHHHHHHHHHH
T ss_pred cCcc----c-----chhh----hc------cCc-------------------------e-EEEecCCHHHHHHHHHHHHH
Confidence 3320 0 0122 10 000 0 00011334566676666655
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAS 961 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~S 961 (1105)
. .+.+.|+| +++.++.+|++|||.+|++...
T Consensus 144 l---------gl~~~giD-i~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 144 L---------GLDFAGID-ILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp T---------T-SEEEEE-EEEETTEEEEEEEETT---TTH
T ss_pred h---------CCCEEEEE-EEecCCCeEEEEecCCchHhHH
Confidence 4 35789999 5666778999999999999864
No 18
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.82 E-value=2.6e-08 Score=104.75 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=79.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhh---cCCCCCceEEeecccCCcccCCeE-EEEEEEEEEeecCCcEEEEEccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITA---TNTNDPRFVVQKYIERPLLIYNTK-FDIRQWFLVTSAYPLTVWMYKES 836 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~---~~~k~~~yVVQKYIEnPLLIdGRK-FDIRVYVLVTS~nPLrVWlYreg 836 (1105)
+|+||..|+.|+|++++++.+++...+.. .......++||+||+. .. +|+|++++- + .... .
T Consensus 126 ~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~------~~~~~~rv~v~~-~-~~~~------~ 191 (277)
T TIGR00768 126 VVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKK------PGGRDIRVFVVG-D-EVIA------A 191 (277)
T ss_pred EEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecC------CCCceEEEEEEC-C-EEEE------E
Confidence 99999999999999999998887655422 1111247999999983 33 699998752 1 1111 1
Q ss_pred eeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHH
Q psy9020 837 YLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVG 916 (1105)
Q Consensus 837 yVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~ 916 (1105)
+.|.....| .+| .+ .++ ... ...+-+.+++++..
T Consensus 192 ~~r~~~~~~----------~~n----~~------~g~--------~~~------------------~~~l~~~~~~~a~~ 225 (277)
T TIGR00768 192 IYRITSGHW----------RTN----LA------RGG--------KAE------------------PCPLTEEIEELAIK 225 (277)
T ss_pred EEEcCCCch----------hhh----hh------cCC--------eee------------------ecCCCHHHHHHHHH
Confidence 223211111 112 10 000 000 00112345555555
Q ss_pred HHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 917 SLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 917 tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
++.+. +. ..+|+||++|.+|.+|+||||..|++..
T Consensus 226 ~~~~l--------~~-~~~~vD~~~~~~g~~~viEiN~~p~~~~ 260 (277)
T TIGR00768 226 AAKAL--------GL-DVVGIDLLESEDRGLLVNEVNPNPEFKN 260 (277)
T ss_pred HHHHh--------CC-CeEEEEEEEcCCCCeEEEEEcCCcchhh
Confidence 55444 22 4789999999999999999999999764
No 19
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=9.6e-08 Score=106.57 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred EEEeCCCCCCCCcEEEEcChH-HHHHHHhhcCCC-CCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLE-DIIQKITATNTN-DPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLe-EIlk~l~~~~~k-~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
-|+||..||.|+||+++++.+ ++.+.+...... ...++||+||..| +=|+|.+|++.. -|..+| ++.
T Consensus 158 vVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~------~~~~rrivv~~~-~~~~~y----~~~ 226 (318)
T COG0189 158 VVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA------KRDDRRVLVGGG-EVVAIY----ALA 226 (318)
T ss_pred EEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc------cCCcEEEEEeCC-EEeEEe----eec
Confidence 899999999999999999988 777766432221 2469999999974 235666665433 244444 667
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
|.+...=-- +| ...+++ .-...+-+.++++++.+.
T Consensus 227 R~~~~~~~R---------~N----------~a~Gg~--------------------------~e~~~l~~e~~elA~kaa 261 (318)
T COG0189 227 RIPASGDFR---------SN----------LARGGR--------------------------AEPCELTEEEEELAVKAA 261 (318)
T ss_pred cccCCCCce---------ee----------cccccc--------------------------ccccCCCHHHHHHHHHHH
Confidence 766552111 12 111110 001234455677777766
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
.+. ...++|+||+.+ +...+++|||.+|+.-.
T Consensus 262 ~~l---------Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 262 PAL---------GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred HHh---------CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 554 567899999999 77899999999997765
No 20
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.75 E-value=7.3e-08 Score=94.88 Aligned_cols=134 Identities=17% Similarity=0.235 Sum_probs=76.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC----CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN----TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKES 836 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~----~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYreg 836 (1105)
||+||..|+.|+||.++++.+++.+++.... .....+|||+||+ |.-+.++.++. ....+.+.+++
T Consensus 42 ~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~--~G~~~~~~~~~-- 111 (184)
T PF13535_consen 42 FVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD--DGEVVFAGISR-- 111 (184)
T ss_dssp EEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE--TTEEEEEEEEE--
T ss_pred EEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE--cceEEEEEEEE--
Confidence 9999999999999999999999887763311 1135799999998 78888888765 22221111111
Q ss_pred eeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHH
Q psy9020 837 YLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVG 916 (1105)
Q Consensus 837 yVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~ 916 (1105)
+.......+ .....+.. .+.. .....+++++.+..
T Consensus 112 ~~~~~~~~~-----~~~~~~~~------------------------~~~~----------------~~~~~~~~~~~~~~ 146 (184)
T PF13535_consen 112 YVRQSPGHF-----SGGVPTGY------------------------SVPS----------------EPPLPEELRDLARK 146 (184)
T ss_dssp EEEEETCCC-----SSSEEEEE------------------------EES------------------CEHHHHHHHHHHH
T ss_pred Eeccccccc-----ccceeeee------------------------eccc----------------ccccHHHHHHHHHH
Confidence 111100000 00000000 0000 00112445666666
Q ss_pred HHHHhhhccCCCCCc-eeEEEEEEEeccCCceEEEEeecCCC
Q psy9020 917 SLLASQDSFDHRKNC-FELYGADFMLAQNFVPWLIEINSGPC 957 (1105)
Q Consensus 917 tLlAaqd~l~~rknc-FELyG~DFMLDEdgKPWLLEVNSSPS 957 (1105)
++.+. +. .+.+++||++|++|++++||||..|+
T Consensus 147 ~~~~~--------g~~~G~~~id~~~~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 147 LLRAL--------GYRNGFFHIDFIVDPDGELYFIEINPRFG 180 (184)
T ss_dssp HHHHH--------T--SEEEEEEEEEETCCEEEEEEEESS--
T ss_pred HHHHc--------CCceEEEEEEEEEeCCCCEEEEEECccCC
Confidence 66555 44 78999999999999999999999875
No 21
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.69 E-value=1e-07 Score=106.57 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 907 YPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 907 ~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
++.+.+++..+..+. +| .++|+||++|.++.|||||||+.|+|+
T Consensus 230 ~~el~~la~~A~~~~--------g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 230 WERLLELAASCWELT--------GL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred HHHHHHHHHHHHHhc--------CC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 344666666665543 55 899999999988999999999999998
No 22
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.66 E-value=2.3e-07 Score=98.81 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=80.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc----CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT----NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKES 836 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~----~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYreg 836 (1105)
+|+||..|+.|+|+.++.+.+++.+.+... ......+|+|+||+.| -.|+|++|+- + . .. .+
T Consensus 125 ~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~------~~d~~v~vig-~-~-~~-----~~ 190 (280)
T TIGR02144 125 VVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP------GRDIRVFVIG-D-E-AI-----AA 190 (280)
T ss_pred EEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC------CCceEEEEEC-C-E-EE-----EE
Confidence 899999999999999999988876654210 1123569999999843 3689998752 1 1 11 11
Q ss_pred eeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHH
Q psy9020 837 YLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVG 916 (1105)
Q Consensus 837 yVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~ 916 (1105)
+.|.+ ..|. .| .+ . ++ ... ...+-+.+.+++..
T Consensus 191 ~~r~~-~~~~----------~~----~~----~--g~---------~~~-----------------~~~~~~~~~~~a~~ 223 (280)
T TIGR02144 191 IYRYS-NHWR----------TN----TA----R--GG---------KAE-----------------PCPLDEEVEELAVK 223 (280)
T ss_pred EEEcC-Cchh----------hh----hh----c--CC---------cee-----------------ccCCCHHHHHHHHH
Confidence 22332 1111 11 00 0 00 000 00112234555555
Q ss_pred HHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 917 SLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 917 tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
++.+. + +..+|+||++++++.+++||||..|++..
T Consensus 224 ~~~~l--------g-~~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 224 AAEAV--------G-GGVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred HHHHh--------C-CCeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 55544 2 34889999999999999999999999975
No 23
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.60 E-value=8.2e-07 Score=109.24 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=104.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
.|+||..++.|.||.++++.+++.+.+......+..++|++||.. ||.|.+-+. ..... .+......-+.
T Consensus 613 ~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~~-----grEi~v~vl--~~~~~---~~~~~~~~e~~ 682 (809)
T PRK14573 613 MFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRLG-----SREIEVSCL--GDGSS---AYVIAGPHERR 682 (809)
T ss_pred EEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccCC-----CEEEEEEEE--eCCCC---ceEeccceEEc
Confidence 799999999999999999999998877543334567999998853 677665543 22111 11000101111
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
+...| +.++.+|...+.. .. ..-.+....+.+..+|++++..++++
T Consensus 683 ~~~~f-----------------~dy~~Ky~~~g~~---------~~--------~~~~Pa~l~~~~~~~i~~~a~~~~~a 728 (809)
T PRK14573 683 GSGGF-----------------IDYQEKYGLSGKS---------SA--------QIVFDLDLSKESQEQVLELAERIYRL 728 (809)
T ss_pred cCCCe-----------------eCchhcccCCCCC---------ce--------EEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 11100 1111111100000 00 00001112344556788888888877
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcCC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDRR 984 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr~ 984 (1105)
. +|.+..++||++|+++++|++|||+.|+|++.+.+.... +.+|++.++...+.|.
T Consensus 729 L--------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~ii~~a~~r~ 790 (809)
T PRK14573 729 L--------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQLIIDGLHKF 790 (809)
T ss_pred h--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 7 799999999999999999999999999999876543322 2466777766666543
No 24
>PRK05246 glutathione synthetase; Provisional
Probab=98.42 E-value=1.7e-06 Score=95.55 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=56.3
Q ss_pred hHHHHhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcCh----HHHHHHHhhcCCCCCceEEeecccC
Q psy9020 730 LDKAIYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKL----EDIIQKITATNTNDPRFVVQKYIER 805 (1105)
Q Consensus 730 Lpeav~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sL----eEIlk~l~~~~~k~~~yVVQKYIEn 805 (1105)
+|+++...+.+.+.++.+.+. -.|+||..|++|+||+++... ..+.+.+.. .....|++|+||+.
T Consensus 135 vP~T~~~~~~~~~~~~~~~~~---------~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~--~~~~~~lvQ~~I~~ 203 (316)
T PRK05246 135 MPPTLVTRDKAEIRAFRAEHG---------DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE--HGREPVMAQRYLPE 203 (316)
T ss_pred CCCEEEeCCHHHHHHHHHHCC---------CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH--ccCCeEEEEecccc
Confidence 454432223445555554333 389999999999999999542 334445433 12458999999985
Q ss_pred CcccCCeEEEEEEEEEEeecCCcEEEEEcc-ceeecccc
Q psy9020 806 PLLIYNTKFDIRQWFLVTSAYPLTVWMYKE-SYLRFCSQ 843 (1105)
Q Consensus 806 PLLIdGRKFDIRVYVLVTS~nPLrVWlYre-gyVRFASq 843 (1105)
+- . -|+|++|+ .+ + .-+ ++.|.+..
T Consensus 204 ~~--~---~D~Rv~vv-~g----~---vv~~a~~R~~~~ 229 (316)
T PRK05246 204 IK--E---GDKRILLV-DG----E---PVGYALARIPAG 229 (316)
T ss_pred CC--C---CCEEEEEE-CC----E---EhhheeEecCCC
Confidence 32 2 39999886 22 1 234 66787655
No 25
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=2.7e-06 Score=95.17 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=95.5
Q ss_pred cEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE-----Ee---ecCC--c
Q psy9020 759 NLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL-----VT---SAYP--L 828 (1105)
Q Consensus 759 NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL-----VT---S~nP--L 828 (1105)
--.++||+.....-||..++...++...+......++..++++||. ||++.+.+.-- +. ..-| -
T Consensus 143 ~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~------~rei~v~vl~~~~~~~~l~~~eI~~~~~ 216 (317)
T COG1181 143 FPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT------GREIEVGVLGNDYEEQALPLGEIPPKGE 216 (317)
T ss_pred CCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC------cceEEEEecCCcccceecCceEEecCCC
Confidence 3599999999999999999988777665543344578899999997 77777665311 00 0000 1
Q ss_pred EEEEEccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhh
Q psy9020 829 TVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYP 908 (1105)
Q Consensus 829 rVWlYregyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~p 908 (1105)
.+|.|..-|+-..... | -.++...+.+.+
T Consensus 217 ~fydye~Ky~~~gg~~----------~-----------------------------------------~~pa~lt~~~~~ 245 (317)
T COG1181 217 EFYDYEAKYLSTGGAQ----------Y-----------------------------------------DIPAGLTDEIHE 245 (317)
T ss_pred eEEeeeccccCCCCce----------e-----------------------------------------eCCCCCCHHHHH
Confidence 2222222111111100 0 011123456778
Q ss_pred hHHHHHHHHHHHhhhccCCCCCceeEEEEEEEecc-CCceEEEEeecCCCCCcCChh
Q psy9020 909 GMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQ-NFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 909 qIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~V 964 (1105)
+|++++..++++. +|-.+-|+||++|+ .+++||+|||+.|+|...+-.
T Consensus 246 ~i~~lA~~a~~al--------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 246 EIKELALRAYKAL--------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred HHHHHHHHHHHhc--------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 8999999998887 89999999999999 999999999999998876643
No 26
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.40 E-value=4.8e-06 Score=91.68 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=92.8
Q ss_pred cEEEEeCCCCCCCCcEEEEcChH---------HHHHHHhhcCCCCCceEEeecccC-Ccc--cC-CeEEEEEEEEEEeec
Q psy9020 759 NLWIVKPGAKSRGRGIQVMYKLE---------DIIQKITATNTNDPRFVVQKYIER-PLL--IY-NTKFDIRQWFLVTSA 825 (1105)
Q Consensus 759 NIWILKPaaGSRGRGI~l~~sLe---------EIlk~l~~~~~k~~~yVVQKYIEn-PLL--Id-GRKFDIRVYVLVTS~ 825 (1105)
.-.|+||..|++|+||.++...+ .+...+.. .. ...||||++|+. |.+ +. .--=+||+..++...
T Consensus 74 ~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~-~~-~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~ 151 (285)
T PF14397_consen 74 DRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLES-LG-GKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDG 151 (285)
T ss_pred CcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHh-cC-CccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCC
Confidence 36999999999999999997643 12222221 11 128999999983 333 22 334489998876652
Q ss_pred CCcEEEEEccceeeccccCCccCCCCccccccc-----ccccch-hhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCc
Q psy9020 826 YPLTVWMYKESYLRFCSQNYSLVNMHESVHLSN-----NITNNA-IQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVA 899 (1105)
Q Consensus 826 nPLrVWlYregyVRFASq~Ysl~NLD~siHLTN-----~ltN~S-IQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~ 899 (1105)
. ++ .-.++.|++...-..+|++...-.+. .+...+ .......+.+||+-. .
T Consensus 152 ~---~~-~~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg---~---------------- 208 (285)
T PF14397_consen 152 E---VE-VLMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTG---A---------------- 208 (285)
T ss_pred e---eE-EEEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCC---C----------------
Confidence 2 21 12457899855555566543211111 000021 000000111233210 0
Q ss_pred hhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecC--CCCCc
Q psy9020 900 DVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSG--PCMAA 960 (1105)
Q Consensus 900 ~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSS--PSLs~ 960 (1105)
.......|...+++..+..++.. + ..+..+|.|++||++| |.|||.|+. |++..
T Consensus 209 -~~~g~~IP~w~~~~~l~~~~~~~-~----p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~ 264 (285)
T PF14397_consen 209 -PFSGFQIPNWDEILELAKEAHRK-F----PGLGYIGWDVAITEDG-PVLLEGNARWDPGLMI 264 (285)
T ss_pred -ccCCccCCCHHHHHHHHHHHHHH-C----CCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHh
Confidence 01111113333333333333322 3 4568899999999999 999999999 99874
No 27
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.36 E-value=1.2e-06 Score=88.07 Aligned_cols=48 Identities=21% Similarity=0.547 Sum_probs=20.5
Q ss_pred CccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEE
Q psy9020 757 FRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDI 816 (1105)
Q Consensus 757 ~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDI 816 (1105)
...-||+||..|+.|.||.++++.+++..... ...++|+||+ |..+-+
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~------~~~i~Qe~i~------G~~~Sv 77 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN------KLRIVQEFIE------GEPYSV 77 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE-------------EEEE---------SEEEEE
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhccccc------cceEEeeeeC------CEEeEE
Confidence 35579999999999999999998876543322 1239999998 765543
No 28
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.32 E-value=1.5e-05 Score=92.45 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=39.8
Q ss_pred CceeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhc
Q psy9020 930 NCFELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVD 982 (1105)
Q Consensus 930 ncFELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVD 982 (1105)
...+++.+|||++ +++.||+||+|+.|++.....+...+...+++-+++++..
T Consensus 263 ~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 263 KFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred CcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 3578899999999 7889999999999999655445555655666666665533
No 29
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.31 E-value=7.6e-06 Score=97.37 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=93.4
Q ss_pred EEEeCCCCCCCCcEEE-EcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQV-MYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l-~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
.|+||..|++|+||.+ +++.+++.+.+.........++||+||. | .|+|+.|+ +.....+ +.|
T Consensus 334 vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~------G--~d~Rv~Vi--gg~vvaa------~~R 397 (547)
T TIGR03103 334 VVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP------G--EDLRLVVI--DFEVVAA------AVR 397 (547)
T ss_pred EEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc------C--CeEEEEEE--CCEEEEE------EEe
Confidence 7999999999999997 8888888776643322345799999996 3 49999765 2222222 233
Q ss_pred ccccCCccCCCC-cccccccccccchhhhcccCCCCCCCCCCCCccCh-HHHHHHHHHhCCc------------------
Q psy9020 840 FCSQNYSLVNMH-ESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDC-YSFQAYLRTMGVA------------------ 899 (1105)
Q Consensus 840 FASq~Ysl~NLD-~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSl-e~fqeyL~s~G~~------------------ 899 (1105)
...+ -+.+-. .-.||-- ....+..+ .........+ .....+|+..|..
T Consensus 398 ~~~~--V~GDG~~ti~~Lie--------~~n~~~~~--~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~N 465 (547)
T TIGR03103 398 RPPE--VIGDGRSSIRDLIE--------KQSRRRAA--ATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTAN 465 (547)
T ss_pred cCcE--EEeCCccCHHHHHH--------HHhcCccC--CCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCc
Confidence 2211 111111 1122221 10000000 0000011111 2233445444321
Q ss_pred -------hhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCce--EEEEeecCCCCCcC
Q psy9020 900 -------DVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVP--WLIEINSGPCMAAS 961 (1105)
Q Consensus 900 -------~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKP--WLLEVNSSPSLs~S 961 (1105)
....+.+.|.+++++..+.++. .....|+|||+++-.+| .+||||++|+|..-
T Consensus 466 l~tGg~~~dvtd~~~~~~~~~A~~aa~~~---------gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 466 LHTGGTIHDVTEQLHPDLREAAERAARAL---------DIPVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred ccCCCeeEecccccCHHHHHHHHHHHHHh---------CCCeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 1113347777888888777664 35678999999886666 89999999999744
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.27 E-value=2.4e-05 Score=90.46 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=38.9
Q ss_pred CceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhh
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVV 981 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVV 981 (1105)
.+.+++.+|||++++++||+||+|..|+......+...+...+++-+++.+.
T Consensus 269 ~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~ 320 (426)
T PRK13789 269 PYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAST 320 (426)
T ss_pred CceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHc
Confidence 3678999999999999999999999998766555555554455554455443
No 31
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.27 E-value=1.9e-05 Score=86.08 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=43.1
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
-||+||..|+.|+|+.++++.+++..++.. ...++||+||. |+-+.+.+++
T Consensus 150 P~viKP~~g~~s~gv~~v~~~~el~~~~~~----~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 150 PLFVKPRDGSASIGVFKVNDKEELEFLLEY----VPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred CEEEEeCCCCCccCeEEeCCHHHHHHHHHh----CCCeEEEeccC------CceEEEEEEE
Confidence 399999999999999999999999887764 24899999995 7777777654
No 32
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.25 E-value=3.1e-05 Score=86.27 Aligned_cols=155 Identities=9% Similarity=0.118 Sum_probs=87.6
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++ .|+|++++++.+++.+.+... ....+|||+||+- |+. +.+.++....+- +++|
T Consensus 136 ~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~--~~~~~lvEe~I~~-----~~E--~sv~~~~~~~G~--~~~~------ 198 (352)
T TIGR01161 136 VVLKARTGGYDGRGQYRIRNEADLPQAAKEL--GDRECIVEEFVPF-----ERE--LSVIVARSADGE--TAFY------ 198 (352)
T ss_pred EEEEeCCCCCCCCCEEEECCHHHHHHHHHhc--CCCcEEEEecCCC-----CeE--EEEEEEEcCCCC--EEEE------
Confidence 899999875 899999999999988777542 2348999999972 333 344333221111 1111
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
.... +.... +... +++ .+..+...+..++++++..++.
T Consensus 199 -~~~~----~~~~~-g~~~----~~~--------------------------------~p~~~~~~~~~~~~~~a~~i~~ 236 (352)
T TIGR01161 199 -PVVE----NIHQD-GILR----YVV--------------------------------APAAVPDAIQARAEEIARRLME 236 (352)
T ss_pred -CCcc----cEEeC-CEEE----EEE--------------------------------CCCCCCHHHHHHHHHHHHHHHH
Confidence 0000 00000 0000 000 0001112233445555555555
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+. +..+.+++||+++.+|.+|++|||..|+-+..... .......++..++.++..
T Consensus 237 ~l--------~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg~~~~-~~~~~s~f~~~~ra~~g~ 291 (352)
T TIGR01161 237 EL--------GYVGVLAVEMFVLPDGRLLINELAPRVHNSGHYTL-DGCSTSQFEQHLRAILGL 291 (352)
T ss_pred Hc--------CceeEEEEEEEEeCCCcEEEEEecCCCCCcCcCch-hhccccHHHHHHHHHcCC
Confidence 44 45689999999999999999999999875432111 122234566666666543
No 33
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.24 E-value=9.2e-06 Score=91.49 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=83.7
Q ss_pred EEEeCCCC---CCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 761 WIVKPGAK---SRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 761 WILKPaaG---SRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
.|+||..| +.|+|+.++.+.+.+.. + ...+++|+||+.| -.|+|+||+-.. . .+.
T Consensus 155 ~V~KPl~g~Gss~gh~m~lv~~~~~L~~-l------~~p~~lQEfVnh~------g~d~RVfVvGd~---v------~~~ 212 (328)
T PLN02941 155 LVAKPLVADGSAKSHKMSLAYDQEGLSK-L------EPPLVLQEFVNHG------GVLFKVYVVGDY---V------KCV 212 (328)
T ss_pred EEEeecccCCCccccceEEecCHHHHHh-c------CCcEEEEEecCCC------CEEEEEEEECCE---E------EEE
Confidence 89999999 99999999998877654 2 2369999999875 469999987322 1 233
Q ss_pred eeccccCCccC--CCCc----ccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHH
Q psy9020 838 LRFCSQNYSLV--NMHE----SVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMK 911 (1105)
Q Consensus 838 VRFASq~Ysl~--NLD~----siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIK 911 (1105)
.|.+...+... |... +-.++| .+.......+. .++ +....-...+.|.
T Consensus 213 ~R~S~~n~~~~~~n~~~G~~~f~~vs~----~~~~~~~~~~~-----------~~~-----------~~~~~~p~~~~l~ 266 (328)
T PLN02941 213 RRFSLPDVSEEELSSAEGVLPFPRVSN----AAASADDADNG-----------GLD-----------PEVAELPPRPFLE 266 (328)
T ss_pred EecCCcccccccccccccccccccccc----ccccccccccc-----------ccc-----------cccccCCChHHHH
Confidence 45444333211 1000 011222 11110000000 000 0000001123355
Q ss_pred HHHHHHHHHhhhccCCCCCceeEEEEEEEeccC--CceEEEEeecCCCCCcCC
Q psy9020 912 DGIVGSLLASQDSFDHRKNCFELYGADFMLAQN--FVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 912 eiIi~tLlAaqd~l~~rkncFELyG~DFMLDEd--gKPWLLEVNSSPSLs~ST 962 (1105)
+++..+-.+. .-+++|+|++.|.+ .+.++||||..|++..-.
T Consensus 267 ~La~~~r~al---------Gl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p 310 (328)
T PLN02941 267 DLARELRRRL---------GLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMP 310 (328)
T ss_pred HHHHHHHHHh---------CCceEEEEEEeecCCCCceEEEEecCCCccccCC
Confidence 5655554443 45789999999974 578999999999998643
No 34
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.18 E-value=3.5e-05 Score=86.03 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=35.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC----CCCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN----TNDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~----~k~~~yVVQKYIE 804 (1105)
+|+||..|+.|+|+.++++.+++.+.+.... .....+|||+||+
T Consensus 139 ~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 139 CVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred EEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 9999999999999999999999877664321 1235799999997
No 35
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.18 E-value=5.5e-05 Score=86.33 Aligned_cols=53 Identities=17% Similarity=0.373 Sum_probs=40.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
+|+||..++.|+|+.++++.+++...+.... .....++||+||+ |+-|.+-++
T Consensus 140 ~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~ 198 (420)
T PRK00885 140 IVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD------GEEASFFAF 198 (420)
T ss_pred EEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC------CcEEEEEEE
Confidence 8999999999999999999998877664321 1135799999997 666666543
No 36
>PRK07206 hypothetical protein; Provisional
Probab=98.17 E-value=2.7e-05 Score=88.06 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=42.1
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcC-------CCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATN-------TNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~-------~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
-+|+||..|+.|+||+++++.+++.+.+.... .....++||+||+ |..|.+-++
T Consensus 148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~~ 208 (416)
T PRK07206 148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI------GTEYVVNFV 208 (416)
T ss_pred CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc------cEEEEEEEE
Confidence 38999999999999999999999877664311 1135799999997 777776654
No 37
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.10 E-value=5.3e-05 Score=86.21 Aligned_cols=52 Identities=17% Similarity=0.377 Sum_probs=39.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC-----CCCCceEEeecccCCcccCCeEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN-----TNDPRFVVQKYIERPLLIYNTKFDIRQ 818 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~-----~k~~~yVVQKYIEnPLLIdGRKFDIRV 818 (1105)
+|+||..++.|+|+.++++.+++.+.+.... .....++||+||+ |.-|.+-+
T Consensus 143 ~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~------G~E~sv~~ 199 (423)
T TIGR00877 143 IVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD------GEEVSLLA 199 (423)
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc------CceEEEEE
Confidence 9999999999999999999988876653321 1135799999997 65555544
No 38
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.10 E-value=7.9e-05 Score=84.70 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=43.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
.|+||..++.|+|+.++.+.+++.+.+.... .....+|||+||+ |+.+.+.+++
T Consensus 105 vVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~~ 160 (379)
T PRK13790 105 VVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTFV 160 (379)
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEEe
Confidence 8999999999999999999998877664321 2235799999997 7788887654
No 39
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.07 E-value=6.5e-05 Score=84.88 Aligned_cols=155 Identities=9% Similarity=0.099 Sum_probs=88.3
Q ss_pred EEEeCCCC-CCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAK-SRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaG-SRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..+ +.|+|+.++++.+++.+.+... ....+|||+||.- |+. +.+-++....+-..+|
T Consensus 138 ~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~--~~~~~ivEe~I~~-----~~E--~sv~~~~~~~G~~~~~-------- 200 (372)
T PRK06019 138 AVLKTRRGGYDGKGQWVIRSAEDLEAAWALL--GSVPCILEEFVPF-----ERE--VSVIVARGRDGEVVFY-------- 200 (372)
T ss_pred EEEEeCCCCcCCCCeEEECCHHHHHHHHHhc--CCCCEEEEecCCC-----CeE--EEEEEEECCCCCEEEe--------
Confidence 99999985 6899999999999988877643 2468999999973 333 3333222211111111
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
... .+.+.. +.+. +++ .+......+..++++++..++.
T Consensus 201 -p~~----e~~~~~-gi~~----~~~--------------------------------~pa~~~~~~~~~~~~~a~~i~~ 238 (372)
T PRK06019 201 -PLV----ENVHRN-GILR----TSI--------------------------------APARISAELQAQAEEIASRIAE 238 (372)
T ss_pred -CCc----ccEEeC-CEEE----EEE--------------------------------CCCCCCHHHHHHHHHHHHHHHH
Confidence 000 000000 0000 000 0001122334455666666655
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+. +..+.+++||+++.++++|++|||..|.-+.--. ....-....+..++.++..
T Consensus 239 ~L--------~~~G~~~vEff~~~dg~~~v~EinpR~~~sg~~t-~~~~~~sqf~~~ira~~Gl 293 (372)
T PRK06019 239 EL--------DYVGVLAVEFFVTGDGELLVNEIAPRPHNSGHWT-IEACSTSQFEQHLRAILGL 293 (372)
T ss_pred Hc--------CccceeEEEEEEcCCCeEEEEEecCCccCcccEE-hhhcCccHHHHHHHHHcCC
Confidence 54 4568899999999999999999999997643211 1112234566666766543
No 40
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.04 E-value=6.9e-05 Score=86.43 Aligned_cols=157 Identities=19% Similarity=0.286 Sum_probs=89.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..++.|+||.++++.+++.+.+... ......++||+||+.| +- +-+-++....+.. +.+.
T Consensus 155 vvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~-----~e--~~v~v~~d~~g~~-~~~~- 225 (449)
T TIGR00514 155 VIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP-----RH--VEIQVLADKYGNA-IYLG- 225 (449)
T ss_pred EEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCC-----eE--EEEEEEEcCCCCE-EEEe-
Confidence 899999999999999999999987766321 1124579999999742 33 3333333221111 1110
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.+.|+. .. .-++.... +......+.+..+|++++
T Consensus 226 ---~~~~~~-------------~~-----~~~~~~~~-------------------------~p~~~l~~~~~~~i~~~a 259 (449)
T TIGR00514 226 ---ERDCSI-------------QR-----RHQKLLEE-------------------------APSPALTPELRRKMGDAA 259 (449)
T ss_pred ---ccccCc-------------ee-----cccceEEE-------------------------CCCCCCCHHHHHHHHHHH
Confidence 000100 00 00000000 000011123445566776
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVD 982 (1105)
..++.+. +..+.+.+||++|.++++|+||||..++-. .++.... --.+++..+++++.
T Consensus 260 ~~~~~~l--------g~~G~~~vef~~~~~g~~~viEiNpR~~~~--~~~~~~~tGvdl~~~~i~~a~G 318 (449)
T TIGR00514 260 VKAAVSI--------GYRGAGTVEFLLDKNGEFYFMEMNTRIQVE--HPVTEMITGVDLIKEQIRIAAG 318 (449)
T ss_pred HHHHHHC--------CCcceEEEEEEEeCCCCEEEEEEECCCCCC--cceeehhcCCcHHHHHHHHHCC
Confidence 6666655 567889999999999999999999888644 2332211 23456666666654
No 41
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.02 E-value=3.5e-05 Score=79.98 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=52.4
Q ss_pred hhhhhHHHHhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcC----hHHHHHHHhhcCCCCCceEEee
Q psy9020 726 YMTSLDKAIYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYK----LEDIIQKITATNTNDPRFVVQK 801 (1105)
Q Consensus 726 Y~~~Lpeav~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~s----LeEIlk~l~~~~~k~~~yVVQK 801 (1105)
|.+.+|+++-....+.+..+.+.+. .||+||..|..|+||++++. ++.+++.+.. .....+++|+
T Consensus 8 f~~~~P~T~vs~~~~~i~~f~~~~~---------~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~--~~~~~~mvQ~ 76 (173)
T PF02955_consen 8 FPELIPPTLVSRDKEEIRAFIEEHG---------DIVLKPLDGMGGRGVFRISRDDPNLNSILETLTK--NGERPVMVQP 76 (173)
T ss_dssp GCCCS--EEEES-HHHHHHHHHHHS---------SEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT--TTTS-EEEEE
T ss_pred ccccCcCEEEECCHHHHHHHHHHCC---------CEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh--cCCccEEEEe
Confidence 3345677744334666666666443 39999999999999999986 4455555532 1245799999
Q ss_pred cccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeeccccC
Q psy9020 802 YIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQN 844 (1105)
Q Consensus 802 YIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~ 844 (1105)
||+. . -+| |.|+.++ .+ .| -+++.|+....
T Consensus 77 flp~-i-~~G---DkRii~~-nG-~~------~~av~R~P~~g 106 (173)
T PF02955_consen 77 FLPE-I-KEG---DKRIILF-NG-EP------SHAVRRIPAKG 106 (173)
T ss_dssp --GG-G-GG----EEEEEEE-TT-EE-------SEEEEE--SS
T ss_pred cccc-c-cCC---CEEEEEE-CC-EE------hHHeecCCCCC
Confidence 9996 3 355 8899765 22 12 23677877653
No 42
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.00 E-value=8.1e-05 Score=84.90 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=90.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc-----CCCCCceEEeecccCCcccCCeEEEEEEEEEE-ee-cCCcE---E
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT-----NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLV-TS-AYPLT---V 830 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~-----~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLV-TS-~nPLr---V 830 (1105)
.|+||..++.|+|++++++.+++.+.+... ......++||+||. |..|.+-+|+-. .+ ..-+. -
T Consensus 152 vIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s~~~~~~e~l~id~r 225 (358)
T PRK13278 152 VIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYSPIKNRLELLGIDRR 225 (358)
T ss_pred EEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEeccCCeEEEEeecee
Confidence 899999999999999999999887766431 11246899999998 777777765421 11 00000 0
Q ss_pred EEE-ccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhh
Q psy9020 831 WMY-KESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPG 909 (1105)
Q Consensus 831 WlY-regyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pq 909 (1105)
|.- .+++.|+.+..+.... .+|.++....|. ....+.+.++
T Consensus 226 ~~~~~d~~~r~p~~~~~~~~------------------------~~p~~v~~Gn~P--------------~~~resll~~ 267 (358)
T PRK13278 226 YESNIDGLVRIPAKDQLELG------------------------IDPTYVVVGNIP--------------VVLRESLLPQ 267 (358)
T ss_pred eeecccceeeccchhhhhcc------------------------cCCceeEeccee--------------ccchHhHHHH
Confidence 111 2244443332110000 011111000111 1122345566
Q ss_pred HHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCC
Q psy9020 910 MKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGP 956 (1105)
Q Consensus 910 IKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSP 956 (1105)
+.+.+...+.++...+. ++..+-|.+|+++++++.+|++|||..+
T Consensus 268 v~~~~~~~v~a~~~~~~--~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 268 VFEYGERFVETSKELVP--PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HHHHHHHHHHHHHHhcC--ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 67777777777666664 2566888999999999999999998877
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.99 E-value=7.2e-05 Score=91.92 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=41.9
Q ss_pred EEEeCCCCCCCCcEEE-EcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQV-MYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l-~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
.|+||..|+.|+|+.+ +++.+++...+.........++||+||. | .|+|++|+
T Consensus 252 vVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 252 VVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred EEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC------C--ceEEEEEE
Confidence 8999999999999998 8998888776643222246899999996 3 48998765
No 44
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.97 E-value=0.0001 Score=84.64 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=88.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+||.++++.+++.+.+... ......++||+||+. ++-+.+ -++....... +.++
T Consensus 155 vvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-----~~e~~v--~v~~d~~g~~-~~~~- 225 (451)
T PRK08591 155 VIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-----PRHIEI--QVLADGHGNA-IHLG- 225 (451)
T ss_pred EEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-----CcEEEE--EEEEcCCCCE-EEEe-
Confidence 899999999999999999999887766431 012357999999974 233333 2232222111 1110
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|-|+ ++..+... +. .+....+...+...|.+.+
T Consensus 226 ---~~~~~----------------------~~~~~~~~-----------~~----------~~p~~~l~~~~~~~l~~~a 259 (451)
T PRK08591 226 ---ERDCS----------------------LQRRHQKV-----------LE----------EAPSPAITEELRRKIGEAA 259 (451)
T ss_pred ---ccccc----------------------ceecceeE-----------EE----------ECCCCCCCHHHHHHHHHHH
Confidence 01010 00000000 00 0000011223445566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVD 982 (1105)
..++.+. +.-+.+.+||++|.++++||||||..++-. .++.... --.+.+-++++++.
T Consensus 260 ~~~~~~l--------g~~G~~~vEf~~~~~g~~~viEINpR~~~~--~~~~~~~~Gvdl~~~~i~~a~G 318 (451)
T PRK08591 260 VKAAKAI--------GYRGAGTIEFLYEKNGEFYFIEMNTRIQVE--HPVTEMITGVDLVKEQIRIAAG 318 (451)
T ss_pred HHHHHHc--------CCCceEEEEEEEcCCCCEEEEEEECCCCcc--chhhhhhhCCCHHHHHHHHHCC
Confidence 6666554 455678899999999999999999888643 3333221 13456666666654
No 45
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.95 E-value=6.4e-05 Score=92.35 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=90.7
Q ss_pred EEEeCCCCCCCCcEEEEcC---hHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 761 WIVKPGAKSRGRGIQVMYK---LEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~s---LeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
.||||..++.|+||.++.+ .+++.+.+......+..+|||+||. | -|+|+.|+-. ..+.+ +
T Consensus 514 VVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G--~EyRv~VIg~--kvvaa------~ 577 (737)
T TIGR01435 514 IVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------G--TEYRFFVLND--KVEAV------L 577 (737)
T ss_pred EEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------C--CEEEEEEECC--eEEEE------E
Confidence 7999999999999999876 5666665543223356799999996 5 4889877632 22211 2
Q ss_pred eeccccCCccCCCCcccccccccccchhhhcccCCCCC--CCCCCCCccChHHHHHHHHHhCC-----------------
Q psy9020 838 LRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRH--RHLPDENMWDCYSFQAYLRTMGV----------------- 898 (1105)
Q Consensus 838 VRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~--p~lp~gnmWSle~fqeyL~s~G~----------------- 898 (1105)
.|... .-..|- .|--- .-|.....+--|. ...|-... ..+.-..+|+++|.
T Consensus 578 ~R~Pa--~ViGDG---~~TI~----eLI~~kN~~p~Rg~~~~~pl~~I-~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~ 647 (737)
T TIGR01435 578 LRVPA--NVTGDG---IHTVR----ELVAEKNTDPLRGTDHRKPLEKI-TGPEETLMLKEQGLTIDSIPKKEQIVYLREN 647 (737)
T ss_pred EECCC--CEEECC---HHHHH----HHHHHhccCcccCCcccCCcccc-cchHHHHHHHHcCCCccccCCCCCEEEEcCC
Confidence 23221 111111 11000 1111111100000 01111111 22223445665542
Q ss_pred -------c-hhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceE--------EEEeecCCCCC
Q psy9020 899 -------A-DVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPW--------LIEINSGPCMA 959 (1105)
Q Consensus 899 -------~-~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPW--------LLEVNSSPSLs 959 (1105)
. ....+.|-|..+++++.+.++. ...+-|+|+++.+--+|| +||||++|+|.
T Consensus 648 aNlstGG~~iDvTd~ihp~~~~lA~~aa~al---------gl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 648 SNVSTGGDSIDMTDEMDDSYKQIAIRIATAV---------GAAICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred CcccCCCceEecccccCHHHHHHHHHHHHhc---------CCCEEEEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 1 1123456777888888877765 224779999998755555 89999999996
No 46
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.95 E-value=0.00047 Score=80.15 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=37.4
Q ss_pred EEEeCCCCCCCCcEEEEc----ChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMY----KLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~----sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
.|+||..++.|+|+.++. ++++.+............+|||+||+ |..|.+=++
T Consensus 144 vVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~------G~E~Svd~~ 200 (435)
T PRK06395 144 VAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMT------GEEFSLQAF 200 (435)
T ss_pred EEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecC------CceEEEEEE
Confidence 899999999999999994 44554444332212245799999997 666666554
No 47
>PRK05586 biotin carboxylase; Validated
Probab=97.95 E-value=0.00021 Score=82.66 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=87.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
.|+||..|+.|+|+.++++.+++.+.+... ......++||+||..| +- +.+-++....+....+.
T Consensus 155 vvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-----~e--i~v~v~~d~~G~~~~~~-- 225 (447)
T PRK05586 155 VMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-----KH--IEFQILGDNYGNVVHLG-- 225 (447)
T ss_pred EEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-----eE--EEEEEEECCCCCEEEEe--
Confidence 999999999999999999999887665321 1113579999999742 22 44444332212111110
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-+-|+. |-.+ |+..... | .....+.+..+|++++
T Consensus 226 ---~~~~~~-----------~~~~-------~~~~~~~------p-------------------~~~l~~~~~~~l~~~a 259 (447)
T PRK05586 226 ---ERDCSL-----------QRRN-------QKVLEEA------P-------------------SPVMTEELRKKMGEIA 259 (447)
T ss_pred ---ceecce-----------Eecc-------cceEEEc------C-------------------CCCCCHHHHHHHHHHH
Confidence 011110 0000 0000000 0 0001123334566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-....+||++|.++++|+||||..|+-. .+++... --.+.+-.+++++..
T Consensus 260 ~~i~~aL--------g~~g~~~vEf~~~~~g~~~~iEvNpR~~~~--~~~t~~~tGid~~~~~i~~a~G~ 319 (447)
T PRK05586 260 VKAAKAV--------NYKNAGTIEFLLDKDGNFYFMEMNTRIQVE--HPITEMITGVDLVKEQIKIAYGE 319 (447)
T ss_pred HHHHHHc--------CCcceeEEEEEEcCCCCEEEEEEECCCCCC--ccceehhhCCCHHHHHHHHHcCC
Confidence 6666554 445567899999999999999999988654 2232111 125566666666543
No 48
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.93 E-value=0.00016 Score=85.36 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=42.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
.||||..|+.|+||.++++.+++.+.+.... ....++||+||. |+.+-+=+++
T Consensus 184 vVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-~~~~viVEe~I~------GrEitVev~v 236 (493)
T PRK06524 184 LVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-GQPEIKVMKRIR------NVEVCIEACV 236 (493)
T ss_pred EEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-CCCCEEEEeccC------cEEEEEEEEE
Confidence 7999999999999999999999888775432 235689999985 7777665543
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.93 E-value=0.00015 Score=82.98 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIER 805 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEn 805 (1105)
+|+||..++.|+|+.++++.+++.+.+... ......++||+||.-
T Consensus 155 ~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g 205 (450)
T PRK06111 155 VMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED 205 (450)
T ss_pred EEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC
Confidence 999999999999999999999887766421 112457999999974
No 50
>PRK08462 biotin carboxylase; Validated
Probab=97.91 E-value=0.00016 Score=83.28 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=35.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIER 805 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEn 805 (1105)
||+||..|+.|+|+.++++.+++...+... ......++||+||+.
T Consensus 157 vvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 157 VILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred EEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 999999999999999999999887765210 112346999999985
No 51
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.88 E-value=0.00018 Score=88.96 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=40.2
Q ss_pred EEEeCCCCCCCCcEEEEc---ChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMY---KLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~---sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
.|+||..|+.|+||.++. +.+++.+.+.........+|||+||. |+ |+|+.|+
T Consensus 527 vVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 527 IVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred EEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------CC--EEEEEEE
Confidence 899999999999999875 46666666543223356799999995 54 8898765
No 52
>PRK12458 glutathione synthetase; Provisional
Probab=97.87 E-value=0.00013 Score=82.28 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=38.8
Q ss_pred EEEeCCCCCCCCcEEEEcChH-----HHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLE-----DIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLe-----EIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
.|+||..|+.|+||+++.+.+ .+++.+.. ...+++|+||..+ ...|+|++|+
T Consensus 165 vVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~----~~~~ivQeyI~~~-----~~gDiRv~vv 221 (338)
T PRK12458 165 MILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG----DGYVIAQEYLPGA-----EEGDVRILLL 221 (338)
T ss_pred EEEEECCCCCccCeEEEecCChhhHHHHHHHHhh----CCCEEEEEcccCC-----CCCCEEEEEE
Confidence 899999999999999997544 33433321 3479999999852 2369999864
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.86 E-value=9.4e-05 Score=94.73 Aligned_cols=157 Identities=20% Similarity=0.250 Sum_probs=90.3
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+||+++++.+++...+... ......++||+||+.| + +|.+-++...... .+.+|
T Consensus 155 vIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~-----r--eIeVqVlgD~~G~-vv~l~- 225 (1143)
T TIGR01235 155 VIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP-----R--HIEVQLLGDKHGN-VVHLF- 225 (1143)
T ss_pred EEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-----e--EEEEEEEEeCCCC-EEEEE-
Confidence 999999999999999999998887665321 1124579999999863 3 4566555443221 12221
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|-|+. |..+.... ...........+..+|.+++
T Consensus 226 ---eRdcsv----------------------qrr~qk~i---------------------e~aPa~~L~~e~r~~I~~~A 259 (1143)
T TIGR01235 226 ---ERDCSV----------------------QRRHQKVV---------------------EVAPAPYLSREVRDEIAEYA 259 (1143)
T ss_pred ---eccccc----------------------cccCceEE---------------------EEeCCCCCCHHHHHHHHHHH
Confidence 122221 11100000 00000011123445566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVD 982 (1105)
..++.++ +.-....+||++|.++++|+||||..+.-. .+++..+ --.+.+-.++++..
T Consensus 260 ~kla~aL--------gy~G~gtVEFlvd~dg~~yfIEVNPRiqve--h~vTe~vtGiDlv~~qi~iA~G 318 (1143)
T TIGR01235 260 VKLAKAV--------NYINAGTVEFLVDNDGKFYFIEVNPRIQVE--HTVTEEITGIDIVQAQIHIADG 318 (1143)
T ss_pred HHHHHHc--------CCcceEEEEEEEeCCCcEEEEEeecCCCcc--hhHHHHHhCcHHHHHHHHHHcC
Confidence 6666554 444567899999999999999999998643 2333221 12445555555543
No 54
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.86 E-value=0.00015 Score=84.87 Aligned_cols=158 Identities=19% Similarity=0.215 Sum_probs=87.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+||.++++.+++...+... ......++||+||+. ++-+.+ -++....+. .+.++
T Consensus 155 vvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~-----~~~iev--~v~~d~~g~-v~~~~- 225 (478)
T PRK08463 155 VILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN-----PRHIEF--QILGDNYGN-IIHLC- 225 (478)
T ss_pred EEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-----CeEEEE--EEEEcCCCC-EEEEe-
Confidence 999999999999999999999887665321 123467999999975 333333 222221111 11111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|-|+ +|..+.... .........+.+..+|++++
T Consensus 226 ---er~~s----------------------~~~~~~~~i---------------------e~~P~~~l~~~~~~~i~~~a 259 (478)
T PRK08463 226 ---ERDCS----------------------IQRRHQKVI---------------------EIAPCPSISDNLRKTMGVTA 259 (478)
T ss_pred ---ccCCc----------------------cccccCceE---------------------EECCCCCCCHHHHHHHHHHH
Confidence 01111 111100000 00000001223445567777
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHH-HHHHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTAR-LCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~-Lk~qVLeDtLkVVVDr 983 (1105)
..++.+. +......+||++|.++++|+||||..++-. .+++.. .--.+++-.+++++..
T Consensus 260 ~~~~~al--------g~~g~~~vEf~~~~~~~~y~iEiN~R~~~~--~~~te~~tGidlv~~~ir~a~G~ 319 (478)
T PRK08463 260 VAAAKAV--------GYTNAGTIEFLLDDYNRFYFMEMNTRIQVE--HGVTEEITGIDLIVRQIRIAAGE 319 (478)
T ss_pred HHHHHHc--------CCCCceeEEEEEcCCCCEEEEEEECCcCCC--cceeeHhhCCCHHHHHHHHHcCC
Confidence 6666655 233345789999998999999999887654 233322 1224556666666543
No 55
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=97.85 E-value=0.00018 Score=83.98 Aligned_cols=157 Identities=15% Similarity=0.233 Sum_probs=88.7
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+|+.++++.+++.+.+... ......++||+||+. |+-+.+ -++....+. +.+
T Consensus 158 vvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-----~~ei~v--~v~~dg~~~--~~~-- 226 (467)
T PRK12833 158 LMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-----ARHIEV--QILGDGERV--VHL-- 226 (467)
T ss_pred EEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-----CEEEEE--EEEeCCCcE--EEE--
Confidence 999999999999999999999887755211 112457999999985 444333 333322211 111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
+.|-|+.. ..-|+..... | .......+..+|.+.+
T Consensus 227 --~~~~~~~~------------------r~~~ki~e~~------p-------------------~~~l~~~~~~~l~~~a 261 (467)
T PRK12833 227 --FERECSLQ------------------RRRQKILEEA------P-------------------SPSLTPAQRDALCASA 261 (467)
T ss_pred --EEeecccc------------------cCCccEEEEC------C-------------------CCCCCHHHHHHHHHHH
Confidence 11222210 0000111000 0 0011123345566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEecc-CCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQ-NFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-+...+||++|+ ++.+||||||..+.-. .+++...+ -.+++-.+++++..
T Consensus 262 ~~~~~al--------g~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~--~~~te~~tGvdl~~~~i~~a~G~ 322 (467)
T PRK12833 262 VRLARQV--------GYRGAGTLEYLFDDARGEFYFIEMNTRIQVE--HPVTEAITGIDLVQEMLRIADGE 322 (467)
T ss_pred HHHHHHc--------CCcCcceEEEEEecCCCCEEEEEEECCCCcc--hhhhHHHhCCCHHHHHHHHHCCC
Confidence 6666555 44466789999984 7899999999988643 34443222 24555566666543
No 56
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=97.85 E-value=0.00034 Score=82.75 Aligned_cols=45 Identities=31% Similarity=0.566 Sum_probs=36.3
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIER 805 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEn 805 (1105)
+|+||..|+.|+||.++++.+++.+.+... ...+..++||+||..
T Consensus 155 vvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 155 VIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred EEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 999999999999999999999887766421 112457999999985
No 57
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.84 E-value=0.00028 Score=84.81 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=91.2
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
.|+||..++ .|+|+.++++.+++...+......+..++|++||.- .+-+- +-++.+..+....|-..
T Consensus 159 ~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~-----~~Eis--V~v~r~~~G~i~~~p~~----- 226 (577)
T PLN02948 159 LMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF-----VKELA--VMVARSRDGSTRCYPVV----- 226 (577)
T ss_pred EEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC-----CeEEE--EEEEECCCCCEEEecCc-----
Confidence 899999765 799999999999987777543333467999999852 12222 22221111111111000
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
.+ .|- + .. .++. ..+......+..++++++..++.
T Consensus 227 --------E~----~~~-~----~~--~~~~--------------------------~~Pa~l~~~~~~~~~~~A~~~~~ 261 (577)
T PLN02948 227 --------ET----IHK-D----NI--CHVV--------------------------EAPANVPWKVAKLATDVAEKAVG 261 (577)
T ss_pred --------cc----EEE-C----Ce--eEEE--------------------------EECCCCCHHHHHHHHHHHHHHHH
Confidence 00 010 0 00 0000 00111122344556777776666
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcCC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRR 984 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr~ 984 (1105)
+. ++.+.+++||++++++.+|++|||..|+.+..-. .....-.+.+..++.++...
T Consensus 262 aL--------g~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh~t-~ea~~~s~fe~~vRa~lGlp 317 (577)
T PLN02948 262 SL--------EGAGVFGVELFLLKDGQILLNEVAPRPHNSGHYT-IEACYTSQFEQHLRAVLGLP 317 (577)
T ss_pred Hh--------CCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCcee-eecccCCHHHHHHHHHcCCC
Confidence 65 6889999999999999999999999998643211 11112356777777776543
No 58
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.81 E-value=0.00039 Score=88.71 Aligned_cols=157 Identities=14% Similarity=0.237 Sum_probs=89.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCe-EEEEEEEEEEeecCCcEEEEEccce
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNT-KFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGR-KFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
||+||..++.|+|+.++.+.+++...+.... .....++||+||+ |. -+++.+.. .. + .+.+.. ..
T Consensus 707 vvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~------G~~E~sV~~v~--dg-~--~v~i~~-i~ 774 (1066)
T PRK05294 707 VLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE------GAIEVDVDAIC--DG-E--DVLIGG-IM 774 (1066)
T ss_pred eEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC------CCEEEEEEEEe--cC-C--eEEEee-eE
Confidence 9999999999999999999999887764321 2346799999998 54 67777632 21 1 111100 00
Q ss_pred eeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 838 LRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 838 VRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
-++.. ..+|.-. ....+ .+....+...+.|++++..+
T Consensus 775 e~i~~---------~gv~~Gd-----------------------s~~~~-----------p~~~l~~~~~~~i~~~a~~i 811 (1066)
T PRK05294 775 EHIEE---------AGVHSGD-----------------------SACSL-----------PPQTLSEEIIEEIREYTKKL 811 (1066)
T ss_pred Eeeee---------ccccCCC-----------------------CcEEe-----------cCCCCCHHHHHHHHHHHHHH
Confidence 00000 0011000 00000 00011223344566666666
Q ss_pred HHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHH-HHHHHHHHHHHhhhcC
Q psy9020 918 LLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTAR-LCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 918 LlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~-Lk~qVLeDtLkVVVDr 983 (1105)
+.+. ++.+.+++||+++ ++.||+||||..|+- +.++... .--.+.+-++++++..
T Consensus 812 ~~aL--------g~~G~~~vqf~~~-~~~~yViEiNpR~s~--t~~~~s~atGi~~~~~~~~~~lG~ 867 (1066)
T PRK05294 812 ALEL--------NVVGLMNVQFAVK-DDEVYVIEVNPRASR--TVPFVSKATGVPLAKIAARVMLGK 867 (1066)
T ss_pred HHHc--------CCeeeEEEEEEEE-CCeEEEEEEecCCCc--cHHHHHHHhCccHHHHHHHHHcCC
Confidence 5554 5668899999998 568999999998863 3333222 2235555566665543
No 59
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.81 E-value=0.00015 Score=80.63 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=38.8
Q ss_pred EEEeCCCCCCCCcEEEEcCh----HHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKL----EDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sL----eEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
.|+||..|+.|+||+.++.. ..+...+... ....+++|+||..+ .+ -|+|++|+
T Consensus 156 vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~--~~~~~~vQ~yI~~~---~~--~D~Rv~vv 213 (312)
T TIGR01380 156 IVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQR--GREPVMAQRYLPEI---KE--GDKRILLI 213 (312)
T ss_pred EEEEECCCCCCceEEEEcCCCccHHHHHHHHHhc--cCCcEEEEeccccc---cC--CCEEEEEE
Confidence 89999999999999998752 2333443321 13579999999852 12 49999876
No 60
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.80 E-value=0.00031 Score=78.97 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=35.7
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC----CCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT----NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~----k~~~yVVQKYIE 804 (1105)
+|+||..++.|+|+.++++.+++.+.+..... ....+|||+||+
T Consensus 152 ~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 152 CVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred EEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 99999999999999999999998776643211 125799999997
No 61
>PRK06849 hypothetical protein; Provisional
Probab=97.80 E-value=0.00019 Score=81.12 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=36.2
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
-+|+||..++.|+|+.++.+.+.+.. +. ......||||+||+ |..+.+..+
T Consensus 154 P~vlKP~~~~~~~~v~~~~~~~~l~~-~~--~~~~~~~ivQe~I~------G~e~~~~~~ 204 (389)
T PRK06849 154 PYVLKPIYSRFVRRVDLLPKEAALKE-LP--ISKDNPWVMQEFIQ------GKEYCSYSI 204 (389)
T ss_pred cEEEEeCcccCCCeEEEecCHHHhcc-cc--cCCCCCeEEEEEec------CCeEEEEEE
Confidence 49999999999999999887444322 21 12234699999998 666665543
No 62
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.78 E-value=0.0004 Score=87.06 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=43.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC-CCCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN-TNDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~-~k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
+|+||..|+.|+|++++++.+++...+.... .....+|||+||+ |.-|.+..++
T Consensus 145 vVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~ 199 (887)
T PRK02186 145 VVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYSVETLT 199 (887)
T ss_pred EEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEE
Confidence 9999999999999999999999877664321 1246899999997 7777777654
No 63
>PLN02735 carbamoyl-phosphate synthase
Probab=97.75 E-value=0.00077 Score=86.51 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=93.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
.|+||..++.|+|+.++.+.+++.+.+.... ....+++||+||+. |+-+++=+.. ...+-..++...+..
T Consensus 740 vvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-----g~Ei~V~vl~--D~~G~vv~~~i~e~~- 811 (1102)
T PLN02735 740 VVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-----ATEIDVDALA--DSEGNVVIGGIMEHI- 811 (1102)
T ss_pred eEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-----cEEEEEEEEE--CCCCCEEEecceEee-
Confidence 8999999999999999999999887764321 22457999999974 6777765431 111111110000000
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
. ...+|..- . ...+ ......+.+..+|++++..++
T Consensus 812 ~-----------~~gvhsGd---------------s------~~~~-------------P~~~L~~e~~~~i~~~a~ki~ 846 (1102)
T PLN02735 812 E-----------QAGVHSGD---------------S------ACSL-------------PTQTIPSSCLATIRDWTTKLA 846 (1102)
T ss_pred e-----------ccCccCCC---------------c------cEEe-------------cCCCCCHHHHHHHHHHHHHHH
Confidence 0 00111110 0 0000 000011233445666666655
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
.+. ++.+++.+||++|.++++|+||||..|+ .+.|+..... -.+.+-++++++..
T Consensus 847 ~~L--------~~~G~~~vqf~v~~dg~~yviEiNpR~s--~t~p~~~katGidl~~~~~~~~~G~ 902 (1102)
T PLN02735 847 KRL--------NVCGLMNCQYAITPSGEVYIIEANPRAS--RTVPFVSKAIGHPLAKYASLVMSGK 902 (1102)
T ss_pred HHc--------CCcceeeEEEEEcCCCcEEEEEEeCCCC--ccHHHHHHHHCCCHHHHHHHHHcCC
Confidence 444 6779999999999999999999999997 3344443322 35566666666553
No 64
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.73 E-value=0.00061 Score=72.24 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=56.0
Q ss_pred HHHHHHHhhhcCCCCCCchhhHhhhhhhhhhHHHHhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcC
Q psy9020 700 SKLQVQLMQSRHNSPADKEDEEKQENYMTSLDKAIYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYK 779 (1105)
Q Consensus 700 ~~~fn~~~q~K~~vp~a~~de~~s~~Y~~~Lpeav~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~s 779 (1105)
|+.|...|..+++.|.+.-.. + ..+ .+.++.+++... ..++|||...+.|+|+.++.+
T Consensus 2 SK~faK~fm~~~~IPTa~~~~-----f-~~~--------~~A~~~l~~~~~--------p~~ViKadGla~GKGV~i~~~ 59 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKV-----F-TDY--------EEALEYLEEQGY--------PYVVIKADGLAAGKGVVIADD 59 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEE-----E-SSH--------HHHHHHHHHHSS--------SEEEEEESSSCTTTSEEEESS
T ss_pred CHHHHHHHHHHcCCCCCCeeE-----E-CCH--------HHHHHHHHhcCC--------CceEEccCCCCCCCEEEEeCC
Confidence 467888888999999874211 1 011 222333333321 147999999999999999999
Q ss_pred hHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 780 LEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 780 LeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
.++..+.+.... ......||++|++ |..+-+=++
T Consensus 60 ~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~------G~E~S~~a~ 99 (194)
T PF01071_consen 60 REEALEALREIFVDRKFGDAGSKVVIEEFLE------GEEVSLFAL 99 (194)
T ss_dssp HHHHHHHHHHHHTSSTTCCCGSSEEEEE---------SEEEEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCCcEEEEeccC------CeEEEEEEE
Confidence 888777664321 1246799999997 666655443
No 65
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.69 E-value=0.001 Score=84.90 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=92.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc--CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT--NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~--~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
+|+||..++.|+|+.++.+.+++...+... .....+++||+||+. |+-+++.+++- + + .++++. .
T Consensus 707 vIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-----G~E~~Vd~l~d--~-g--~v~i~~--i- 773 (1050)
T TIGR01369 707 VLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-----AVEVDVDAVSD--G-E--EVLIPG--I- 773 (1050)
T ss_pred EEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-----CeEEEEEEEEe--C-C--EEEEEE--E-
Confidence 999999999999999999999988776432 123457999999985 78888876532 2 1 122110 0
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
.+.+.. ..+|... +. ..+ ........+.+.|++++..++
T Consensus 774 ---~e~~~~----~gv~sGd-----s~----------------~~~-------------P~~~l~~~~~~~i~~~a~ki~ 812 (1050)
T TIGR01369 774 ---MEHIEE----AGVHSGD-----ST----------------CVL-------------PPQTLSAEIVDRIKDIVRKIA 812 (1050)
T ss_pred ---EEeecc----cCCcCCC-----ce----------------EEe-------------cCCCCCHHHHHHHHHHHHHHH
Confidence 000000 0111100 00 000 000111223345666666655
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHH-HHHHHHHHHHHHhhhcCC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTA-RLCAQVLEDVIKVVVDRR 984 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~-~Lk~qVLeDtLkVVVDr~ 984 (1105)
++. +.-+.+.+||++++ +.+|+||||..++- +.++.. ..--.+.+-++++++...
T Consensus 813 ~aL--------gi~G~~~vqf~~~~-~~~yvIEvNpR~s~--t~p~vs~atGi~l~~~~~~~~lG~~ 868 (1050)
T TIGR01369 813 KEL--------NVKGLMNIQFAVKD-GEVYVIEVNPRASR--TVPFVSKATGVPLIKLATRVMLGKK 868 (1050)
T ss_pred HHC--------CCcceEEEEEEEEC-CeEEEEEEeCCCCc--hHHHHHHHHCCCHHHHHHHHHcCCC
Confidence 554 44578899999985 78999999999863 233322 222355666666665543
No 66
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=97.63 E-value=0.00076 Score=78.91 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+||.++++.+++.+.+... ......++||+||.. ++-+. +-++....+ -.+.++
T Consensus 154 vvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-----~~eie--v~v~~d~~G-~~v~~~- 224 (472)
T PRK07178 154 VMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-----PKHIE--VQILADSHG-NVVHLF- 224 (472)
T ss_pred EEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-----CeEEE--EEEEEECCC-CEEEEE-
Confidence 899999999999999999999887654321 112346899999975 34333 333322211 111111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|.|+ +|..+.... . ........+.+..+|++.+
T Consensus 225 ---er~~s----------------------~~~~~~~~~--e-------------------~~P~~~l~~~~~~~i~~~a 258 (472)
T PRK07178 225 ---ERDCS----------------------IQRRNQKLI--E-------------------IAPSPQLTPEQRAYIGDLA 258 (472)
T ss_pred ---ccccc----------------------eEecCcceE--E-------------------ECCCCCCCHHHHHHHHHHH
Confidence 11111 111100000 0 0000011123445566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHH-HHHHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTAR-LCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~-Lk~qVLeDtLkVVVDr 983 (1105)
..++.+. +......+||++|.++++|+||||..+.-.. +++.. .--.+.+..+++++..
T Consensus 259 ~~~~~aL--------g~~g~~~vEf~~d~~g~~y~iEiNpRl~~~~--~~te~~tGvdl~~~~ir~a~G~ 318 (472)
T PRK07178 259 VRAAKAV--------GYENAGTVEFLLDADGEVYFMEMNTRVQVEH--TITEEITGIDIVREQIRIASGL 318 (472)
T ss_pred HHHHHHc--------CCCceeEEEEEEeCCCCEEEEEEeCCcCCCc--cceeeeeCcCHHHHHHHHHCCC
Confidence 6666655 3344567999999999999999999885532 22211 1123455566666543
No 67
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.60 E-value=0.00053 Score=88.20 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=87.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
||+||..|+.|+||.++++.+++...+... ......++||+||+.| + ++.+-++....+-. +.++
T Consensus 159 vVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~-----~--~ieVqvl~D~~G~v-v~l~- 229 (1146)
T PRK12999 159 IMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP-----R--HIEVQILGDKHGNV-VHLY- 229 (1146)
T ss_pred EEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC-----e--EEEEEEEEECCCCE-EEEE-
Confidence 999999999999999999999887665321 1124579999999853 2 24444443322211 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|-|+ +|..+.... ...|. ......+..+|.+.+
T Consensus 230 ---erdcs----------------------vqrr~qk~i--e~aP~-------------------~~L~~~~~~~l~~~A 263 (1146)
T PRK12999 230 ---ERDCS----------------------VQRRHQKVV--EIAPA-------------------PGLSEELRERICEAA 263 (1146)
T ss_pred ---ccccc----------------------eeecCccEE--EEcCC-------------------CCCCHHHHHHHHHHH
Confidence 11121 222111000 00000 001123344566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
..++.+. +.-....+||++|.++.+||||||..+.-. ..++.... -.+++-.+++++.
T Consensus 264 ~kl~~al--------gy~G~gtVEflvd~dg~~yfIEINpRlqve--h~vte~~tGvDlv~~~iriA~G 322 (1146)
T PRK12999 264 VKLARAV--------GYVNAGTVEFLVDADGNFYFIEVNPRIQVE--HTVTEEVTGIDIVQSQILIAEG 322 (1146)
T ss_pred HHHHHHc--------CCCceEEEEEEEECCCCEEEEEEECCCCCc--chHHHHHhCcCHHHHHHHHHCC
Confidence 6666554 233345699999999999999999887643 33433221 3456666666554
No 68
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.60 E-value=0.001 Score=76.34 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=85.8
Q ss_pred cEEEEeCCCCCC--CCcEEEEcChHHHHHHHhhcC-------CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcE
Q psy9020 759 NLWIVKPGAKSR--GRGIQVMYKLEDIIQKITATN-------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLT 829 (1105)
Q Consensus 759 NIWILKPaaGSR--GRGI~l~~sLeEIlk~l~~~~-------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLr 829 (1105)
.-.|+||..+++ |+|++++++.+++........ .....++||+||. |..|.+-+|+-.-. +-+.
T Consensus 153 ~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~s~l~-g~ve 225 (366)
T PRK13277 153 RPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFYSPIR-DRLE 225 (366)
T ss_pred ccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEEeccC-CcEE
Confidence 359999999999 999999999999876654321 1124567999997 78887776642101 1111
Q ss_pred EEE----E---ccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCC-CCCCCCccChHHHHHHHHHhCCchh
Q psy9020 830 VWM----Y---KESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHR-HLPDENMWDCYSFQAYLRTMGVADV 901 (1105)
Q Consensus 830 VWl----Y---regyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p-~lp~gnmWSle~fqeyL~s~G~~~~ 901 (1105)
.-. | -+|++|+.+.. |-... .+| ....|+ + +..
T Consensus 226 ~l~id~R~esn~dg~~r~pa~~---------------------ql~~~---~~p~~vv~G~-~--------------p~t 266 (366)
T PRK13277 226 LLGIDRRIQSNLDGFVRLPAPQ---------------------QLKLN---EEPRYIEVGH-E--------------PAT 266 (366)
T ss_pred EEEEeeccccccccccccChhh---------------------hhhcc---cCCceEEEcC-c--------------ccc
Confidence 100 0 12333332221 00000 000 000011 0 111
Q ss_pred hHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeec
Q psy9020 902 WQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINS 954 (1105)
Q Consensus 902 Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNS 954 (1105)
-.+.+.+.+.+++...+.++...+.+ +..+-|.+|+++++++.+|++|||.
T Consensus 267 ~rEslle~v~e~ger~v~a~~~~~~p--g~iGpf~lQ~iv~~d~~~~V~EInp 317 (366)
T PRK13277 267 IRESLLEKVFEIGEKFVEATKELYPP--GIIGPFTLQTIVTPDLDFVVYDVAP 317 (366)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhcCc--ccccceEEEEEEcCCCcEEEEEEcC
Confidence 12235566677777777776655543 5667888999999999999999975
No 69
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.60 E-value=0.0012 Score=84.45 Aligned_cols=52 Identities=12% Similarity=0.397 Sum_probs=42.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQ 818 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRV 818 (1105)
+|+||..++.|+|+.++.+.+++.+.+........+++||+||+ |+.+++-+
T Consensus 708 vVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 708 VLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEEEEE
Confidence 99999999999999999999998887754323456899999995 67777655
No 70
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.51 E-value=0.00022 Score=78.15 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=26.2
Q ss_pred CCceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 929 KNCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 929 kncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
.++++.+|+|+++. ..||+||||..|.-.
T Consensus 231 ~Gl~GYVGVDlVls--D~pYvIEINpR~TTp 259 (307)
T COG1821 231 PGLNGYVGVDLVLS--DEPYVIEINPRPTTP 259 (307)
T ss_pred ccccceeeEEEEec--CCcEEEEecCCCCcc
Confidence 58999999999998 789999999998755
No 71
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.49 E-value=0.00035 Score=87.52 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=41.6
Q ss_pred EEEeCCCCCCCCcEEE-EcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQV-MYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l-~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
.|+||..|+.|+||.+ +.+.+++.+.+.........++||+||. | -|+|++|+
T Consensus 251 vVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 251 VVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred EEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc------C--CEEEEEEE
Confidence 7999999999999998 8888888776643222345799999996 5 37888664
No 72
>PLN02735 carbamoyl-phosphate synthase
Probab=97.45 E-value=0.0017 Score=83.44 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=92.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc--CCCCCceEEeecccCCcccCC-eEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT--NTNDPRFVVQKYIERPLLIYN-TKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~--~~k~~~yVVQKYIEnPLLIdG-RKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
.|+||+.++.|+|+.++++.+++.+.+... ......++||+||. | +.+.+=++ ....+...
T Consensus 183 vVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~------G~kE~ev~Vl--~D~~g~~i-------- 246 (1102)
T PLN02735 183 LIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL------GWKEYELEVM--RDLADNVV-------- 246 (1102)
T ss_pred EEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC------CCeEEEEEEE--EcCCCCEE--------
Confidence 799999999999999999999988777432 12356799999997 4 45665443 11111111
Q ss_pred eecccc-CCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCch-hhHhhhhhhHHHHHH
Q psy9020 838 LRFCSQ-NYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVAD-VWQKVIYPGMKDGIV 915 (1105)
Q Consensus 838 VRFASq-~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~-~Wed~I~pqIKeiIi 915 (1105)
-+|.. .++. ..+| +. .+ ... .+. ...+..+..|++++.
T Consensus 247 -~v~~ie~~dp----~gvh-~G----~s-------------------~~v-----------aPa~tL~~~~~q~l~~~A~ 286 (1102)
T PLN02735 247 -IICSIENIDP----MGVH-TG----DS-------------------ITV-----------APAQTLTDKEYQRLRDYSV 286 (1102)
T ss_pred -EEeeEEEEcC----Cccc-cC----CE-------------------EEE-----------EeCCCCCHHHHHHHHHHHH
Confidence 11111 0000 0111 00 00 000 000 012334556777777
Q ss_pred HHHHHhhhccCCCCCc-eeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhcC
Q psy9020 916 GSLLASQDSFDHRKNC-FELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 916 ~tLlAaqd~l~~rknc-FELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVDr 983 (1105)
.++.+. ++ .+...+||++| .++++|+||||. .++.++++.... -..+.+-++++++..
T Consensus 287 ki~~aL--------gi~~G~~nVqf~l~~~~g~~~ViEVNP--R~s~ss~l~s~atG~~~a~~~~klalG~ 347 (1102)
T PLN02735 287 AIIREI--------GVECGGSNVQFAVNPVDGEVMIIEMNP--RVSRSSALASKATGFPIAKMAAKLSVGY 347 (1102)
T ss_pred HHHHHh--------CCCcCceEEEEEEECCCCcEEEEEecC--CCCCcchhhhhhhCCCHHHHHHHHHCCC
Confidence 777766 66 57889999999 589999999995 444555554432 335566666766554
No 73
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.44 E-value=0.006 Score=72.40 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhhccCCCCCceeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhh
Q psy9020 910 MKDGIVGSLLASQDSFDHRKNCFELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVV 980 (1105)
Q Consensus 910 IKeiIi~tLlAaqd~l~~rkncFELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVV 980 (1105)
+.+++..++.+....+. ....+.+-++||++ .+| |||||+|...+=.....+...+...+++-+++++
T Consensus 266 ~~~~v~~~l~al~~~~g--~~~~G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~ 334 (486)
T PRK05784 266 AVEIVKRTIDAIYKETG--ERYVGVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAA 334 (486)
T ss_pred HHHHHHHHHHHHHHhcC--CCcEEEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHH
Confidence 34555555555443322 12247888999998 555 9999999988832222233333334444444443
No 74
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.17 E-value=0.0032 Score=80.59 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=35.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC--CCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT--NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~--k~~~yVVQKYIE 804 (1105)
.|+||..++.|+|+.++++.+++...+..... ....++||+||.
T Consensus 165 vIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 165 VIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred eEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 89999999999999999999998776533221 125799999997
No 75
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.10 E-value=0.015 Score=62.13 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=89.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
.++||+.|..|+|+.++.+.+++...+... .......+|.+||+.| |.+++- ++..+.+- -+.+
T Consensus 41 VliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~-----reiEvq--vi~D~~gn-~~~~-- 110 (211)
T PF02786_consen 41 VLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA-----REIEVQ--VIRDGKGN-VVHL-- 110 (211)
T ss_dssp EEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE-----EEEEEE--EEEETTSE-EEEE--
T ss_pred eEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh-----hhhhhh--hhhccccc-eeee--
Confidence 999999999999999999999887766321 0125689999999963 333332 23222220 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
..|=|+ .|.|+...- ...| .....+.++.+|+++.
T Consensus 111 --~~~e~~----------------------~~~hs~dsi--~~~P-------------------~~~L~~~~~~~l~~~a 145 (211)
T PF02786_consen 111 --GERECS----------------------EQRHSQDSI--EEAP-------------------AQTLSDEERQKLREAA 145 (211)
T ss_dssp --EEEEEE----------------------EEETTEEEE--EEES--------------------SSS-HHHHHHHHHHH
T ss_pred --eeeccc----------------------cccccccce--eEee-------------------ccccchHHHHHHHHHH
Confidence 111111 111111000 0000 0111234455667776
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEecc-CCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQ-NFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
...+... +.-+..-+=|++|. ++++|+||||. .++.+++++..+. ..++.-.+++++..
T Consensus 146 ~~ia~~l--------~~~G~~tvef~~~~~~~~~y~lEvNp--R~~~~~p~~e~~tg~dlv~~~~~ia~G~ 206 (211)
T PF02786_consen 146 KKIARAL--------GYVGAGTVEFAVDPDDGEFYFLEVNP--RLQREHPVTEKVTGYDLVRVQIRIALGE 206 (211)
T ss_dssp HHHHHHT--------T-EEEEEEEEEEETTTTEEEEEEEES--S--TTHHHHHHHHT--HHHHHHHHHTT-
T ss_pred HHHHHhh--------CeeecceEEEEEccCccceeeecccC--CCCCcchHHHHHHCCCHHHHHHHHHCCC
Confidence 6666655 67788899999998 99999999885 5666677766554 46777777776543
No 76
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.08 E-value=0.0034 Score=80.38 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=35.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIE 804 (1105)
.|+||..|+.|+|+.++++.+++.+.+.... .....+|||+||.
T Consensus 166 vVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 166 VIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred eEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 8999999999999999999999877664211 1235799999997
No 77
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.97 E-value=0.0067 Score=71.49 Aligned_cols=46 Identities=35% Similarity=0.578 Sum_probs=37.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERP 806 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnP 806 (1105)
.||||++|+.|+||+++++.+++.+.+... ...+..++++|||++|
T Consensus 155 VivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 155 VIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred EEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 999999999999999999999887766321 1134559999999986
No 78
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.91 E-value=0.013 Score=70.17 Aligned_cols=157 Identities=17% Similarity=0.284 Sum_probs=96.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhh------cCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITA------TNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~------~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
..+|.++|..|+|+.++.+.+++...+.+ ....+.+.+|.||+.+| |.+.+ -|+-.... -.+|++.
T Consensus 155 VlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P-----RHIEi--QV~aD~HG-Nvv~LgE 226 (645)
T COG4770 155 VLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP-----RHIEI--QVFADQHG-NVVHLGE 226 (645)
T ss_pred EEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC-----ceEEE--EEEecCCC-CEEEeec
Confidence 88999999999999999999988776632 12346789999999997 33333 33322211 1222221
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
+.-|+|..++.- ++. .......+.+...|-+++
T Consensus 227 --------------------------RdCSlQRRhQKV--------------------IEE-APaP~l~~~~R~amg~aA 259 (645)
T COG4770 227 --------------------------RDCSLQRRHQKV--------------------IEE-APAPFLTEETREAMGEAA 259 (645)
T ss_pred --------------------------cccchhhhcchh--------------------hhc-CCCCCCCHHHHHHHHHHH
Confidence 114566554321 111 111122334445566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHH-HHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCA-QVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~-qVLeDtLkVVVD 982 (1105)
+.+.+++ +...-=-+-|++|.++..|+||+|+. |.-.+||+..+.- .|++-.|++.-.
T Consensus 260 v~~a~av--------gY~gAGTVEFivd~~~~f~FlEMNTR--LQVEHPVTE~iTGiDLVewqiRVA~G 318 (645)
T COG4770 260 VAAAKAV--------GYVGAGTVEFIVDADGNFYFLEMNTR--LQVEHPVTELITGIDLVEWQIRVASG 318 (645)
T ss_pred HHHHHhc--------CCCcCceEEEEEcCCCcEEEEEeecc--eeccccchhhhhhhHHHHHHHHHhcC
Confidence 5555554 22222246789999999999999995 5555677765543 678888888744
No 79
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=96.90 E-value=0.01 Score=77.24 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=35.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIER 805 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEn 805 (1105)
+|+||..++.|+||.++++.+++...+... ......++||+||+.
T Consensus 153 vVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 153 VMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 999999999999999999998887655321 112346999999974
No 80
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.024 Score=66.35 Aligned_cols=220 Identities=17% Similarity=0.210 Sum_probs=123.2
Q ss_pred ccccccc-cCCCCChhhhhhhhhhhhhhhccccCCCCccccccccccccccCccccccchhhHHHHHHHHHHHhhhcCCC
Q psy9020 635 LTLRGFK-MLPDLSPKLVRKSKYWSKSAKRERSFPLKPIRSVSVKSSKQEQGFSFNDCTSEVYELISKLQVQLMQSRHNS 713 (1105)
Q Consensus 635 l~~~g~~-~lp~~k~e~~~~~k~~s~~~~rk~~iP~~~V~~n~l~sr~~e~g~~f~~cKsevy~~I~~~fn~~~q~K~~v 713 (1105)
|..+|+. +=|.+..-.++.+|-|.|...++|.||-.. |+..
T Consensus 83 l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~------------------------y~~f-------------- 124 (428)
T COG0151 83 LRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAE------------------------YEVF-------------- 124 (428)
T ss_pred HHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCccc------------------------cccc--------------
Confidence 5667888 668888888999999999999999999321 0111
Q ss_pred CCCchhhHhhhhhhhhhHHHHhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC-
Q psy9020 714 PADKEDEEKQENYMTSLDKAIYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNT- 792 (1105)
Q Consensus 714 p~a~~de~~s~~Y~~~Lpeav~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~- 792 (1105)
. +.+.+..| +.++ -+ -|++||.....|+|+.+..+.++..+.++....
T Consensus 125 -~---~~e~a~ay-------i~~~-----------g~---------piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~ 173 (428)
T COG0151 125 -T---DPEEAKAY-------IDEK-----------GA---------PIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEG 173 (428)
T ss_pred -C---CHHHHHHH-------HHHc-----------CC---------CEEEecccccCCCCeEEcCCHHHHHHHHHHHHhh
Confidence 0 11222223 2222 11 399999999999999999998888776542211
Q ss_pred -----CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeeccccCCccCCCCcccccccccccchhhh
Q psy9020 793 -----NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQC 867 (1105)
Q Consensus 793 -----k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK 867 (1105)
...+.||..|++ |-.|-+-++ +.+.+ +. -+ -..|.
T Consensus 174 ~~fg~~g~~VVIEEfL~------GeE~S~~a~--~DG~~---v~-------p~----------------------p~aQD 213 (428)
T COG0151 174 NAFGSAGARVVIEEFLD------GEEFSLQAF--VDGKT---VI-------PM----------------------PTAQD 213 (428)
T ss_pred ccccCCCCcEEEEeccc------ceEEEEEEE--EcCCe---EE-------EC----------------------ccccc
Confidence 125688888887 666665443 23221 11 01 11121
Q ss_pred cccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhh-HHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCc
Q psy9020 868 KYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPG-MKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFV 946 (1105)
Q Consensus 868 ~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pq-IKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgK 946 (1105)
|-.-+.-+...-.|.|.+.... ....+.++.+ +++++..++.+.... .....+++=.=|||+.+|
T Consensus 214 hKra~dgD~GPNTGGMGaysp~----------P~~t~e~~~~~~~~Iv~ptv~gm~~E---G~~f~GvLy~glMlt~~G- 279 (428)
T COG0151 214 HKRAYDGDTGPNTGGMGAYSPA----------PFITDEVVERAVEEIVEPTVEGMAKE---GYPFRGVLYAGLMLTADG- 279 (428)
T ss_pred cccccCCCCCCCCCCCCCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHc---CCCceEEEEeEEEEcCCC-
Confidence 1111110111112344433211 1111222222 336666666554433 224567777889999999
Q ss_pred eEEEEeecCCCCCcCChhHHHHHHHHHHHHH
Q psy9020 947 PWLIEINSGPCMAASTSVTARLCAQVLEDVI 977 (1105)
Q Consensus 947 PWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtL 977 (1105)
|.+||.|+.=+=..+..+..+|...+++-++
T Consensus 280 PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~ 310 (428)
T COG0151 280 PKVIEFNARFGDPETQVVLPLLESDLVELLL 310 (428)
T ss_pred cEEEEEecccCChhHHHHHHhccccHHHHHH
Confidence 9999999965443344444555544444333
No 81
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.76 E-value=0.01 Score=76.36 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=35.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC--CCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT--NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~--k~~~yVVQKYIE 804 (1105)
.|+||..++.|+|+.++++.+++.+.+..... ....++||+||.
T Consensus 166 vVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 166 IIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred EEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 89999999999999999999998776633211 135799999997
No 82
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.48 E-value=0.071 Score=55.61 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=76.6
Q ss_pred EEEe-CCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecC------CcEEEEE
Q psy9020 761 WIVK-PGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAY------PLTVWMY 833 (1105)
Q Consensus 761 WILK-PaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~n------PLrVWlY 833 (1105)
.|+| +..|.-|+|-+++++.+++.+..... ....+|++++|.- .+ .|=+.+.. +.+ |+.--.+
T Consensus 31 ~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--~~~~~ilE~~v~f-----~~--EiSvivaR-~~~G~~~~yp~~en~~ 100 (172)
T PF02222_consen 31 AVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--GGGPCILEEFVPF-----DR--EISVIVAR-DQDGEIRFYPPVENVH 100 (172)
T ss_dssp EEEEESSSSCTTTTEEEESSGGGHHHHHHHT--TTSCEEEEE---E-----SE--EEEEEEEE-ETTSEEEEEEEEEEEE
T ss_pred EEEEccCcCcCCCccEEECCHHHHHHHHHhc--CCCcEEEEeccCC-----cE--EEEEEEEE-cCCCCEEEEcCceEEE
Confidence 8999 67789999999999999988877653 4678999999973 11 12222211 111 2222223
Q ss_pred ccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHH
Q psy9020 834 KESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDG 913 (1105)
Q Consensus 834 regyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKei 913 (1105)
+++.++.+..|- ...+.+..+++++
T Consensus 101 ~~~il~~s~~Pa-------------------------------------------------------~i~~~~~~~a~~i 125 (172)
T PF02222_consen 101 RDGILHESIAPA-------------------------------------------------------RISDEVEEEAKEI 125 (172)
T ss_dssp ETTEEEEEEESC-------------------------------------------------------SS-HHHHHHHHHH
T ss_pred ECCEEEEEECCC-------------------------------------------------------CCCHHHHHHHHHH
Confidence 333333332210 0112344456666
Q ss_pred HHHHHHHhhhccCCCCCceeEEEEEEEeccCCc-eEEEEeecCCCCC
Q psy9020 914 IVGSLLASQDSFDHRKNCFELYGADFMLAQNFV-PWLIEINSGPCMA 959 (1105)
Q Consensus 914 Ii~tLlAaqd~l~~rkncFELyG~DFMLDEdgK-PWLLEVNSSPSLs 959 (1105)
+..++.+. +..++|++.|.++++|+ +|+=||--.|--+
T Consensus 126 a~~i~~~l--------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 126 ARKIAEAL--------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp HHHHHHHH--------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred HHHHHHHc--------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 66666655 67899999999999998 9999987777543
No 83
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=96.04 E-value=0.11 Score=59.54 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.9
Q ss_pred CceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
+.=.++++.|-.|.+|+|+|||||..|+=.
T Consensus 255 ~l~g~~NiQ~r~d~~g~p~LLEINpR~sGG 284 (329)
T PF15632_consen 255 GLDGLFNIQFRYDEDGNPKLLEINPRPSGG 284 (329)
T ss_pred CCCceEEEEEEEcCCCCEEEEEeCCCCccc
Confidence 566789999999999999999999988754
No 84
>KOG0238|consensus
Probab=95.27 E-value=0.23 Score=59.53 Aligned_cols=157 Identities=15% Similarity=0.254 Sum_probs=92.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhh------cCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITA------TNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~------~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
.++|+.+|+.|+|..+..+.+++...+.. ....+...++.|||++|- .+.+. |+-... ---+|++.
T Consensus 151 vMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR-----HiEvQ--v~gD~h-Gnav~l~E 222 (670)
T KOG0238|consen 151 VMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR-----HIEVQ--VFGDKH-GNAVHLGE 222 (670)
T ss_pred EEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc-----eEEEE--EEecCC-CcEEEecc
Confidence 89999999999999999998887766632 122457789999999973 33333 232221 12344431
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
|= -|||..++. .++..-. ..........|-+++
T Consensus 223 ----Rd----------------------CSvQRRnQK--------------------iiEEaPa-p~l~~e~R~~lgeaA 255 (670)
T KOG0238|consen 223 ----RD----------------------CSVQRRNQK--------------------IIEEAPA-PNLPEETRRALGEAA 255 (670)
T ss_pred ----cc----------------------cchhhhhhh--------------------hhhcCCC-CCCCHHHHHHHHHHH
Confidence 11 344443221 1111111 111223334455555
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
..+..++ +...-=-+.|++|++++-+++|+|+. +.-.+|++.-+. ..|++-.|++...
T Consensus 256 v~aa~av--------gY~~aGTVEFi~D~~~~FyFmEmNTR--LQVEHPvTEmItg~DLVewqiRvA~g 314 (670)
T KOG0238|consen 256 VRAAKAV--------GYVGAGTVEFIVDSKDNFYFMEMNTR--LQVEHPVTEMITGTDLVEWQIRVAAG 314 (670)
T ss_pred HHHHHhh--------CCcccceEEEEEcCCCcEEEEEeece--eeecccchhhccchHHHHHHHHHhcC
Confidence 5444443 22222247899999999999999995 444566665443 3678888888754
No 85
>KOG0369|consensus
Probab=94.17 E-value=0.18 Score=61.69 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=38.1
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhh------cCCCCCceEEeecccCCc
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITA------TNTNDPRFVVQKYIERPL 807 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~------~~~k~~~yVVQKYIEnPL 807 (1105)
-.|+|-+.|+.|||+.++++.+++.+.... ....+....|.++|++|-
T Consensus 186 PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPr 239 (1176)
T KOG0369|consen 186 PVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPR 239 (1176)
T ss_pred cEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcc
Confidence 489999999999999999998887665521 122457889999999873
No 86
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=93.78 E-value=0.25 Score=61.65 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=37.5
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhh------cCCCCCceEEeecccCCc
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITA------TNTNDPRFVVQKYIERPL 807 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~------~~~k~~~yVVQKYIEnPL 807 (1105)
-.|+|-+.|+.|||+.++++.+++.+.+.. .........|.|||++|-
T Consensus 160 PvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 160 PVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred cEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 489999999999999999999888776622 112345677899999873
No 87
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.57 E-value=0.52 Score=56.11 Aligned_cols=78 Identities=15% Similarity=0.339 Sum_probs=47.8
Q ss_pred ccEEEEeCCCCCCCCcEEEEcC--hHHHHHHHhhcCCCCCceEEeecccCCcc-----cCCeEEEEEEEEEEeecCCcEE
Q psy9020 758 RNLWIVKPGAKSRGRGIQVMYK--LEDIIQKITATNTNDPRFVVQKYIERPLL-----IYNTKFDIRQWFLVTSAYPLTV 830 (1105)
Q Consensus 758 ~NIWILKPaaGSRGRGI~l~~s--LeEIlk~l~~~~~k~~~yVVQKYIEnPLL-----IdGRKFDIRVYVLVTS~nPLrV 830 (1105)
+.-||+||..+..|+||.+=.. .++-.+.++... ...||+|+|+.-+-+ -+|. +.+.-+... +..
T Consensus 338 r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~--~~~yilQe~v~~~~~~~~~~~dg~-~~~~~~~~~-----~g~ 409 (445)
T PF14403_consen 338 RDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAA--REPYILQEYVRPPREPMPAFEDGE-VVFEEYPYD-----SGP 409 (445)
T ss_pred hhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHh--cCCcEEEEEecCCccccccccCCc-eeEeeeeee-----ccc
Confidence 4579999999999999998764 233344443322 348999999984322 2343 222222221 124
Q ss_pred EEEc----cceeecccc
Q psy9020 831 WMYK----ESYLRFCSQ 843 (1105)
Q Consensus 831 WlYr----egyVRFASq 843 (1105)
|+|. ++|.|+++.
T Consensus 410 fly~~~~~G~~tR~g~~ 426 (445)
T PF14403_consen 410 FLYGGKFAGCYTRLGTG 426 (445)
T ss_pred eeECCEEEEEEEEeccC
Confidence 6664 568888855
No 88
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=91.80 E-value=2.1 Score=49.29 Aligned_cols=52 Identities=27% Similarity=0.450 Sum_probs=40.3
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhh----cCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITA----TNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~----~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
-++||..+|.|+|-.++++.+++.+.... ......+.||..+|+ ||+-+=+|
T Consensus 152 cvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---------fd~EiTlL 207 (394)
T COG0027 152 CVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---------FDFEITLL 207 (394)
T ss_pred eecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEec---------ceEEEEEE
Confidence 78999999999999999999999776632 122356788888884 77777554
No 89
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=91.47 E-value=0.81 Score=52.80 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 909 GMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 909 qIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
.+.+++..++... +--+.-|+||++.++| |++||||-.+.=+
T Consensus 236 e~e~la~elV~~l--------gL~GsnGVDfvl~d~g-pyViEVNPR~qGt 277 (389)
T COG2232 236 EAERLAEELVEEL--------GLVGSNGVDFVLNDKG-PYVIEVNPRIQGT 277 (389)
T ss_pred HHHHHHHHHHHHh--------ccccccccceEeecCC-cEEEEecCcccch
Confidence 3455555555443 4455669999997774 8999999766544
No 90
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=88.76 E-value=2.4 Score=46.01 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=29.4
Q ss_pred CceeEEEEEEEeccCCceEEEEeecC--CCCCcCChhHHHHHHHHH
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSG--PCMAASTSVTARLCAQVL 973 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSS--PSLs~ST~Vd~~Lk~qVL 973 (1105)
+..++.|+|.+...+|+-++||||.+ |-+.....-+.++...|+
T Consensus 152 GGlDI~~v~ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV 197 (203)
T PF02750_consen 152 GGLDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLV 197 (203)
T ss_dssp G--SEEEEEEEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHH
T ss_pred CCccEEEEEEEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHH
Confidence 67789999999999999999999985 555555555666655554
No 91
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=86.49 E-value=1.9 Score=50.48 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=77.2
Q ss_pred HhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhc---------CCCCCceEEeeccc
Q psy9020 734 IYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITAT---------NTNDPRFVVQKYIE 804 (1105)
Q Consensus 734 v~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~---------~~k~~~yVVQKYIE 804 (1105)
++.-+..+|.++++.+.++.++. ....|+|-.+|.-|.||+.+.+.+|+..+-... ...-...|||++|.
T Consensus 234 lA~~Vd~~L~kir~KY~eYgI~e-~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~ 312 (403)
T TIGR02049 234 LATAVDQVLSKTQKKYEEYGIHT-QPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVY 312 (403)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-CCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcc
Confidence 55556889999999999988864 568999999999999999999999987654211 11226789999997
Q ss_pred CCcccCCeEEEEEEEEEEeecCCcEEEEEc----cceeeccccCCccCCCC-ccccccc
Q psy9020 805 RPLLIYNTKFDIRQWFLVTSAYPLTVWMYK----ESYLRFCSQNYSLVNMH-ESVHLSN 858 (1105)
Q Consensus 805 nPLLIdGRKFDIRVYVLVTS~nPLrVWlYr----egyVRFASq~Ysl~NLD-~siHLTN 858 (1105)
.==.+++-- -.|+ ||+.. +|+.|+.+..=.-.|++ ..+|..-
T Consensus 313 T~E~~~~av-----------AEPV-VYmid~~vvggfYRvh~~Rg~dENLNapG~~F~p 359 (403)
T TIGR02049 313 TFEMFNEAV-----------AEPV-VYMIGRTVTGGFYRVHTGRGVDENLNAPGMHFVP 359 (403)
T ss_pred eeeeeCCcc-----------cCce-EEEECCEEeEEEEEecCCCCCcccCCCCCCeeee
Confidence 521222211 1232 44443 56778887765555665 4677766
No 92
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=85.85 E-value=9.8 Score=45.15 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=32.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC--CCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT--NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~--k~~~yVVQKYIE 804 (1105)
.|+||+.+.+|.|-.++.+.+++.+....... .-.+.+++++|.
T Consensus 153 vIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~ 198 (400)
T COG0458 153 VIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII 198 (400)
T ss_pred EEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeec
Confidence 89999999999999999999998887743221 113455666665
No 93
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=85.17 E-value=0.28 Score=53.87 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=23.3
Q ss_pred CcCeeeccCCC-CcccccCCCcccccccccchhHHhhhcccccccc--ccCcccccCCChhhhHHHHHhhhhhhHhHHHH
Q psy9020 419 SKNTIVSRFPR-AYFTTKSGSKKVFYDFCQVGLCNHLQQMHWFSEA--VHFPRCHNISSTDDLTELCDDFRLTACLSLLR 495 (1105)
Q Consensus 419 ~~~qivNhf~~-~~fTtK~~~~~~~~~~~~vGLc~~L~~l~Wf~e~--~ffPRCy~l~~~dd~~~Fv~DfrlTAa~s~LK 495 (1105)
++.|+||||++ ..+|.| .+|..+|+.+.=.... .|+|++|.|. .+..+|...+.--.- --
T Consensus 5 ~~~q~vN~~p~~~~l~~K------------~~l~~~l~~~~~~~~~~~~~~p~t~~l~--~~~~~~~~~~~~~~~---~~ 67 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRK------------DLLAKNLQRYRKKFPKEFDFYPETFILP--QDYKEFLKYFEKNPK---NL 67 (292)
T ss_dssp CHHTT-TSS--EEEE-----------------------------------------HH--HHHHHHHHHHHTTS------
T ss_pred CCCeeEccCCCCchhhhh------------HHHHHHHHHHHhhcCCcccCCcceEecH--HHHHHHHHHHhcCCC---CE
Confidence 45799999999 999999 8999999987665544 7999999995 778888876553322 34
Q ss_pred HHhhc
Q psy9020 496 FVVYS 500 (1105)
Q Consensus 496 ~~v~~ 500 (1105)
||++-
T Consensus 68 wI~KP 72 (292)
T PF03133_consen 68 WIVKP 72 (292)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 67664
No 94
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=80.78 E-value=3.5 Score=48.52 Aligned_cols=116 Identities=9% Similarity=0.152 Sum_probs=65.1
Q ss_pred HhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHh---------hcCCCCCceEEeeccc
Q psy9020 734 IYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKIT---------ATNTNDPRFVVQKYIE 804 (1105)
Q Consensus 734 v~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~---------~~~~k~~~yVVQKYIE 804 (1105)
++..+..+|.++++.|.++.++. ....|+|-.+|.-|.||+.+.+.+++..+-. +....-...|||++|.
T Consensus 237 La~~Vd~lL~kir~KY~eygI~e-~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~ 315 (404)
T PF08886_consen 237 LASAVDQLLAKIRKKYKEYGIKE-KPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVY 315 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--S----EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-CceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcc
Confidence 55556789999999999988864 5588999999999999999999988743321 0112236799999998
Q ss_pred CCcccCCeEEEEEEEEEEeecCCcEEEEEccceeeccccCCccCCCC-ccccccc
Q psy9020 805 RPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMH-ESVHLSN 858 (1105)
Q Consensus 805 nPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~Ysl~NLD-~siHLTN 858 (1105)
.=-.+++-.-.-=+|++ .. | .-+|+.|+.+..=.-.|++ ..+|..-
T Consensus 316 T~E~~~~avAEPVVYmi-d~------~-vvggfyRvh~~rg~deNLNapGm~F~p 362 (404)
T PF08886_consen 316 TFERFNDAVAEPVVYMI-DR------Y-VVGGFYRVHTERGVDENLNAPGMHFVP 362 (404)
T ss_dssp --EEETTEEEEEEEEEE-TT------E-EEEEEEEEES--STTTTTS--TT-EEE
T ss_pred hhhhhCCccccceEEEE-CC------E-EEEEEEEecCCCCCccCCCCCCCEeee
Confidence 74445554433333432 11 0 1256778887765556775 4677766
No 95
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=77.18 E-value=2.7 Score=50.12 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=58.1
Q ss_pred EEEeCCCCCCCCcEEEEcCh-----HHHHHHHhhcCCCCCceEEeeccc---CCcccCC----eEEEEEEEEEEeecCCc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKL-----EDIIQKITATNTNDPRFVVQKYIE---RPLLIYN----TKFDIRQWFLVTSAYPL 828 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sL-----eEIlk~l~~~~~k~~~yVVQKYIE---nPLLIdG----RKFDIRVYVLVTS~nPL 828 (1105)
-++||..++.|-|..+=..+ .++.+.+.. ....||.|.-+. -|..++| |..|+|.|++.+..
T Consensus 368 lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a---~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~~--- 441 (488)
T COG2308 368 LVIKPVEGSGGYGMLVGPAASKAELAAFAERIKA---DPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADRD--- 441 (488)
T ss_pred heEeeeccCCCCcceeccccCHHHHHHHHHHHHh---ChhhhcccccccccccceEECCeeccccccceeEEEEcCC---
Confidence 68999999988777765443 233444432 356899999887 5667765 78999999997764
Q ss_pred EEEEEccceeecccc
Q psy9020 829 TVWMYKESYLRFCSQ 843 (1105)
Q Consensus 829 rVWlYregyVRFASq 843 (1105)
.+|+.-+|+.|++..
T Consensus 442 ~~~v~pGGLtRVal~ 456 (488)
T COG2308 442 GVQVMPGGLTRVALR 456 (488)
T ss_pred ceEEcccceeeeeec
Confidence 488999999999987
No 96
>KOG3895|consensus
Probab=73.77 E-value=13 Score=43.59 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=42.3
Q ss_pred CceeEEEEEEEeccCCceEEEEeec--CCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINS--GPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNS--SPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+...+-.+|.+...+|+=++||||- -|-+......++++...|+...+.-++-+
T Consensus 341 GgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l~~ 396 (488)
T KOG3895|consen 341 GGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLLTR 396 (488)
T ss_pred CCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhccCC
Confidence 5677789999999999999999997 47777777778888777776655555444
No 97
>KOG2155|consensus
Probab=72.92 E-value=1.9 Score=51.25 Aligned_cols=72 Identities=17% Similarity=0.330 Sum_probs=52.3
Q ss_pred CCCCeEEeeCCCCCccccC---CcCeeeccCCC-CcccccCCCcccccccccchhHHhhhccccccccccCcccccCCCh
Q psy9020 400 AQVNLLWTMRGDTLDWKRI---SKNTIVSRFPR-AYFTTKSGSKKVFYDFCQVGLCNHLQQMHWFSEAVHFPRCHNISST 475 (1105)
Q Consensus 400 ~~~~fiWt~r~~~vd~~~l---~~~qivNhf~~-~~fTtK~~~~~~~~~~~~vGLc~~L~~l~Wf~e~~ffPRCy~l~~~ 475 (1105)
...+.+|+...-. ||+-| .+++|+|+|+. ++.|.| --|+...+.-+ ...--+||+|||.
T Consensus 331 kdADilw~~~hf~-Dykkls~e~p~~~iNQFPfE~cltvK------------d~LA~~a~r~~--g~~~Wlq~TyNL~-- 393 (631)
T KOG2155|consen 331 KDADILWMIKHFH-DYKKLSEENPCGMINQFPFESCLTVK------------DLLAACAMRDP--GKNDWLQLTYNLN-- 393 (631)
T ss_pred cccceeeehhhHH-HHHHHhccCCcceeccCchHHHHHHH------------HHHHHHHhhcC--CCCcccccccccc--
Confidence 3578899975422 46654 67899999999 999999 44555444322 2225789999998
Q ss_pred hhhHHHHHhhhhh
Q psy9020 476 DDLTELCDDFRLT 488 (1105)
Q Consensus 476 dd~~~Fv~DfrlT 488 (1105)
-++-.||.+|.--
T Consensus 394 TqLpqFv~~fq~R 406 (631)
T KOG2155|consen 394 TQLPQFVARFQNR 406 (631)
T ss_pred cchHHHHHHHHHH
Confidence 5688999999864
No 98
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=72.08 E-value=35 Score=39.93 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=91.6
Q ss_pred HHHHHHHHhCccccc--CCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC-------CCCceEEeecccCCcccC
Q psy9020 740 HTVEHTKKFWPQMHL--DGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNT-------NDPRFVVQKYIERPLLIY 810 (1105)
Q Consensus 740 ~lL~~Lk~~~PQ~~m--dG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~-------k~~~yVVQKYIEnPLLId 810 (1105)
.+|++-.=..|.... +..+...|+|+...-+|||-++..+.++..+..+.... .-..+.||+||-
T Consensus 130 ~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~------ 203 (361)
T COG1759 130 KLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV------ 203 (361)
T ss_pred HHHHHcCCCCCcccCChHHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee------
Confidence 344444444454222 23456899999887789999999998887666533211 225688999997
Q ss_pred CeEEEEEEEEE-EeecCCcEEE----EE---ccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCC
Q psy9020 811 NTKFDIRQWFL-VTSAYPLTVW----MY---KESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDEN 882 (1105)
Q Consensus 811 GRKFDIRVYVL-VTS~nPLrVW----lY---regyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gn 882 (1105)
|..|-+-.+.- +. +-+.+. -| -+|++|+.+. -|....- .|..
T Consensus 204 G~~f~~~yFyS~i~--~~lEl~g~D~R~Esn~Dg~~RlPa~---------------------~ql~l~~---~pty---- 253 (361)
T COG1759 204 GAPFYFHYFYSPIK--DRLELLGIDRRYESNLDGLVRLPAK---------------------DQLELNL---EPTY---- 253 (361)
T ss_pred ccceeeeeeecccc--CceeEeeeeheeeccchhhccCCHH---------------------HHhhcCC---CceE----
Confidence 55555443210 00 001110 00 0222332111 1110000 0000
Q ss_pred ccChHHHHHHHHHhC-CchhhHhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeec
Q psy9020 883 MWDCYSFQAYLRTMG-VADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINS 954 (1105)
Q Consensus 883 mWSle~fqeyL~s~G-~~~~Wed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNS 954 (1105)
...| .+....+.+.+++-++.-..+.+++..++ ++-.+-|.+-.++++|+..++.||-.
T Consensus 254 -----------vv~Gn~p~vlRESLL~~vfe~ger~V~a~kel~~--PG~iGpFcLq~~~t~dl~~vVfevS~ 313 (361)
T COG1759 254 -----------VVVGNIPVVLRESLLPKVFEMGERFVEATKELVP--PGIIGPFCLQTIVTDDLEFVVFEVSA 313 (361)
T ss_pred -----------EEECCcchhhHHHHHHHHHHHHHHHHHHHHHhcC--CCcccceeeeeeecCCccEEEEEEec
Confidence 0001 12223345667777777778888887776 35666677788999999999999854
No 99
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=71.71 E-value=4.7 Score=46.58 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=19.6
Q ss_pred CceeEEEEEEEeccCCceEEEEeecC-CCC
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSG-PCM 958 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSS-PSL 958 (1105)
....++|+||..|.+|++|+||.|+. |+-
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~PsG 95 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRAPSG 95 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS---
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCCCcH
Confidence 45679999999999999999999995 654
No 100
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=68.84 E-value=15 Score=42.28 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=27.5
Q ss_pred ceeEEEEEEEeccC--CceEEEEeecCCCCCcCChhHHHH
Q psy9020 931 CFELYGADFMLAQN--FVPWLIEINSGPCMAASTSVTARL 968 (1105)
Q Consensus 931 cFELyG~DFMLDEd--gKPWLLEVNSSPSLs~ST~Vd~~L 968 (1105)
...|||||++++.. ++.++|.||--|++..-......+
T Consensus 262 gL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l 301 (307)
T PF05770_consen 262 GLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVL 301 (307)
T ss_dssp T-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHH
T ss_pred CcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHH
Confidence 46899999999975 589999999999998654443333
No 101
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=67.09 E-value=7.4 Score=46.07 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=41.1
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
-|+.||..|-.|.||.++..-..+ .... ..-.+..+|.|+|++.| .++|+-.=|..|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~-~~~~-g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGES-EDTD-GNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEE-eccC-CCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 499999999999999999763222 1111 12235789999999998 55776445555554
No 102
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=65.20 E-value=16 Score=45.64 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=54.2
Q ss_pred HHhhchHHHHHHHHHhCcc--------cccCC--CccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeec
Q psy9020 733 AIYQCSKHTVEHTKKFWPQ--------MHLDG--FRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKY 802 (1105)
Q Consensus 733 av~~cs~~lL~~Lk~~~PQ--------~~mdG--~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKY 802 (1105)
.|.+. +.+|.-|=+.+|. ++.+. ...-|+.||..|-.|.+|.++..-..+...... .-....+|.|+|
T Consensus 493 ~llsN-KaiLplLW~l~p~Hp~LLpayfe~d~~l~~~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g-~y~~~~~IyQ~~ 570 (619)
T PRK10507 493 VIPGN-KAILPVLWSLFPHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHQEEVLDKTSG-KFAEQKNIYQQL 570 (619)
T ss_pred hhccc-HHHHHHHHHhCCCCcccccccccCCcccccCCeEeccCCCcCCCCEEEEeCCCcEeeccCC-CCCCCCeEEEEe
Confidence 34544 7777777776665 11111 122499999999999999999753333222211 223578999999
Q ss_pred ccCCcccCCeEEEEEEEEE
Q psy9020 803 IERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 803 IEnPLLIdGRKFDIRVYVL 821 (1105)
++.| .++|.-.=|-.|++
T Consensus 571 ~~LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 571 WCLP-KVDGKYIQVCTFTV 588 (619)
T ss_pred ccCc-ccCCCEEEEEEEEE
Confidence 9998 44555445555544
No 103
>KOG2158|consensus
Probab=57.99 E-value=2.5 Score=50.67 Aligned_cols=53 Identities=32% Similarity=0.664 Sum_probs=47.7
Q ss_pred CceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
-||+.+|+|++. +..++|++|+|..|.+..+...+...+..++..+++.+--+
T Consensus 13 v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~ 65 (565)
T KOG2158|consen 13 VCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIR 65 (565)
T ss_pred eehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCC
Confidence 589999999999 99999999999999999998889999999999998876433
No 104
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=52.21 E-value=8.3 Score=45.24 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHhhchHHHHHHHHHhCccc--------ccC-CCcc--EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEe
Q psy9020 732 KAIYQCSKHTVEHTKKFWPQM--------HLD-GFRN--LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQ 800 (1105)
Q Consensus 732 eav~~cs~~lL~~Lk~~~PQ~--------~md-G~~N--IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQ 800 (1105)
+++... +.+|.-|=+++|.. .-+ +.+. .|+.||..|-.|.+|.++..-...+...... -....+|.|
T Consensus 260 k~ilsN-K~lLplLW~~fPnHp~LL~t~F~~~~~~~~~~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~-Yg~eg~IyQ 337 (387)
T COG0754 260 KSILSN-KALLPLLWERFPNHPNLLPTYFEPDDEEKLGESYVRKPLFGREGANVSIFEDAGKVLDKADGP-YGEEGMIYQ 337 (387)
T ss_pred HHHhcc-ccHHHHHHHhCCCCcccccccCCCCccccchhhhhccccccccCCCeeEEecCCceeecCCCC-ccccchhhh
Confidence 345555 88999998888872 111 1122 2999999999999999998755544443332 235789999
Q ss_pred ecccCC
Q psy9020 801 KYIERP 806 (1105)
Q Consensus 801 KYIEnP 806 (1105)
+|++.|
T Consensus 338 e~~~Lp 343 (387)
T COG0754 338 EFYPLP 343 (387)
T ss_pred hhccCc
Confidence 999987
No 105
>KOG2156|consensus
Probab=51.07 E-value=5.9 Score=48.26 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=57.6
Q ss_pred CeEEeeCCCCCccccCCcCeeeccCCC-CcccccCCCcccccccccchhHHhhhccccccc--cccCcccccCCChhhhH
Q psy9020 403 NLLWTMRGDTLDWKRISKNTIVSRFPR-AYFTTKSGSKKVFYDFCQVGLCNHLQQMHWFSE--AVHFPRCHNISSTDDLT 479 (1105)
Q Consensus 403 ~fiWt~r~~~vd~~~l~~~qivNhf~~-~~fTtK~~~~~~~~~~~~vGLc~~L~~l~Wf~e--~~ffPRCy~l~~~dd~~ 479 (1105)
..+|--.-...-|+.|...|-||||++ .-+--| |-|- |+-++|+-=|.. .-|+||.|.|- .|.+
T Consensus 228 ~g~Wg~h~ksp~fr~ir~HQkvNH~PGsF~IGRK--------D~lW---~~~~~~~~rf~~kef~fmPrtyilP--~d~e 294 (662)
T KOG2156|consen 228 MGVWGHHLKSPSFRAIRSHQKVNHFPGSFRIGRK--------DRLW---RNILRNQVRFGKKEFGFMPRTYILP--ADRE 294 (662)
T ss_pred HHHhhhhcCCchhhhhhhhhhhccCCCccccccc--------hHHH---HHHHHHHHHhcccccCccceeeecc--ccHH
Confidence 346776666777899999999999997 555556 4443 444555555654 39999999997 6777
Q ss_pred HHHHhhhhhhHhHHHHHHhhcc
Q psy9020 480 ELCDDFRLTACLSLLRFVVYSV 501 (1105)
Q Consensus 480 ~Fv~DfrlTAa~s~LK~~v~~~ 501 (1105)
+|. +|+-+-|..+ |||+--
T Consensus 295 ~lr-k~w~~nasr~--wIVkpp 313 (662)
T KOG2156|consen 295 ELR-KYWEKNASRL--WIVKPP 313 (662)
T ss_pred HHH-HHHhhCcccc--EEecCc
Confidence 776 5555644444 888753
No 106
>KOG0237|consensus
Probab=49.50 E-value=6.8e+02 Score=32.13 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=52.5
Q ss_pred HHHHHHHhhhcCCCCCCchhh----HhhhhhhhhhHHHHhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEE
Q psy9020 700 SKLQVQLMQSRHNSPADKEDE----EKQENYMTSLDKAIYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQ 775 (1105)
Q Consensus 700 ~~~fn~~~q~K~~vp~a~~de----~~s~~Y~~~Lpeav~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~ 775 (1105)
||.|...|-+|++-|.|.-+. +.+..| ++.| -++ -.++|-....-|+|++
T Consensus 108 sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sf-------i~~~----------~~~---------~~ViKAdGLAAGKGVi 161 (788)
T KOG0237|consen 108 SKNFSKDFMHRHNIPTAKYKTFTDPEEAKSF-------IQSA----------TDK---------ALVIKADGLAAGKGVI 161 (788)
T ss_pred hHHHHHHHHHhcCCCcceeeeeCCHHHHHHH-------HHhC----------CCc---------ceEEeecccccCCceE
Confidence 677888888999999986321 111111 2222 122 4799999999999999
Q ss_pred EEcChHHHHHHHhh------cCCCCCceEEeeccc
Q psy9020 776 VMYKLEDIIQKITA------TNTNDPRFVVQKYIE 804 (1105)
Q Consensus 776 l~~sLeEIlk~l~~------~~~k~~~yVVQKYIE 804 (1105)
+-.+.+|..+.++. ........||.+.++
T Consensus 162 v~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LE 196 (788)
T KOG0237|consen 162 VAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLE 196 (788)
T ss_pred eeccHHHHHHHHHHHHhhhhhccccceEehhhhcC
Confidence 99998887766632 122345677777766
No 107
>KOG2983|consensus
Probab=48.79 E-value=82 Score=36.20 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=38.8
Q ss_pred hhhHhhhhhhhhhHHHHhhchHHHHHHHH-HhCcccccCCCc-cEEEEeCCCCCCCCcEEEEcChHHHHHHHh
Q psy9020 718 EDEEKQENYMTSLDKAIYQCSKHTVEHTK-KFWPQMHLDGFR-NLWIVKPGAKSRGRGIQVMYKLEDIIQKIT 788 (1105)
Q Consensus 718 ~de~~s~~Y~~~Lpeav~~cs~~lL~~Lk-~~~PQ~~mdG~~-NIWILKPaaGSRGRGI~l~~sLeEIlk~l~ 788 (1105)
+|+..+..+++..|+..+.- ++-++.|- ++.|.+.-...+ -.||.=-. -..++..++|.-.++
T Consensus 72 ddedtat~~~pe~~El~qki-~eaineLGgaV~PKLNWSaPrDA~WI~pn~-------slkCt~~nei~LLfk 136 (334)
T KOG2983|consen 72 DDEDTATLNRPEFPELEQKI-REAINELGGAVIPKLNWSAPRDAAWISPNQ-------SLKCTTFNEIALLFK 136 (334)
T ss_pred cccccccccccchHHHHHHH-HHHHHHccceecccccCCCCCcceeeccCC-------CcccccHHHHHHHHh
Confidence 44455566666777665544 77788886 778887666544 58886322 223455777765554
No 108
>COG5340 Predicted transcriptional regulator [Transcription]
Probab=48.28 E-value=33 Score=38.46 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhcCcEEEE------EcCCh-HHHHHH---HhCCccccccCCC-CCCCCCCCCcc-----hhHHHHhh
Q psy9020 333 KLKYLKSLVETAIKSRKTYTV------LGHFP-NIREAF---RARGWLEKYHDIS-EEYPRPTNDSK-----DEHMVSRL 396 (1105)
Q Consensus 333 rlk~~K~~ve~AiK~kKIFsI------~G~YP-vIR~aL---r~RGWVEKk~~~~-~~~~~~~~~~~-----d~~~~sr~ 396 (1105)
-++....+++-|+|.+|||+| .|-=| .+|.+| .+|||+|+...-. ...+-|.++.. |+.++|-+
T Consensus 13 ~m~~~e~l~~laae~hkiiTirdvae~~ev~~n~lr~lasrLekkG~LeRi~rG~YlI~~lpage~~~~t~he~~~~S~~ 92 (269)
T COG5340 13 SMRESELLSHLAAEGHKIITIRDVAETLEVAPNTLRELASRLEKKGWLERILRGRYLIIPLPAGEEAVYTTHEYLIASHV 92 (269)
T ss_pred hHHHHHHHHHHHHHhCceEEeHHhhhhccCCHHHHHHHHhhhhhcchhhhhcCccEEEeecCCCcccceeehhHHHHHHH
Confidence 356678899999999999998 46566 566654 3479999976655 33444544433 34445544
Q ss_pred cc
Q psy9020 397 LR 398 (1105)
Q Consensus 397 l~ 398 (1105)
+.
T Consensus 93 ~~ 94 (269)
T COG5340 93 AE 94 (269)
T ss_pred cc
Confidence 43
No 109
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=38.69 E-value=1.3e+02 Score=34.70 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.8
Q ss_pred eeEEEEEEEeccC-CceEEEEeecCCC
Q psy9020 932 FELYGADFMLAQN-FVPWLIEINSGPC 957 (1105)
Q Consensus 932 FELyG~DFMLDEd-gKPWLLEVNSSPS 957 (1105)
.+-|=+|+-++.+ +++||||+|.--.
T Consensus 214 ~~~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 214 LDNYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CCCEEEEEEEcCCCCeEEEEEecCCcc
Confidence 4557899999999 9999999998544
No 110
>KOG2157|consensus
Probab=30.92 E-value=37 Score=41.63 Aligned_cols=113 Identities=17% Similarity=0.303 Sum_probs=68.9
Q ss_pred EEEEcCCh-HHHHHHHhCCccccccCCCCCCCCCCCCcchhHHHHhhccCCCCCeEEeeCCCCCc--cccCCcC-eeecc
Q psy9020 351 YTVLGHFP-NIREAFRARGWLEKYHDISEEYPRPTNDSKDEHMVSRLLRDAQVNLLWTMRGDTLD--WKRISKN-TIVSR 426 (1105)
Q Consensus 351 FsI~G~YP-vIR~aLr~RGWVEKk~~~~~~~~~~~~~~~d~~~~sr~l~~~~~~fiWt~r~~~vd--~~~l~~~-qivNh 426 (1105)
|.-+=.=| +|++.+.++||++.... +...+|.|... ..++ +..+.+. |++||
T Consensus 78 y~~~~~~~~~i~~~~~~~G~l~~~~~-----------------------~~~~~f~w~~~-~~~~~~~~~~~p~~~~~~~ 133 (497)
T KOG2157|consen 78 YRTQEKEPKLLNNFLNREGWLQFTES-----------------------AEDWNFYWRGY-EGIDFDFSWLAPYNQVVNH 133 (497)
T ss_pred EEecccchHHHHHHHhhcceeeeccc-----------------------ccceEEEEecc-ccccHHHhhhcchhhhhhc
Confidence 44444444 78889999999998762 36789999984 4444 4456666 99999
Q ss_pred CCC-CcccccCCCcccccccccchhHHhhhcccc----------ccccccCcccccCCChhhhHHHHHhhhhhhHhHHHH
Q psy9020 427 FPR-AYFTTKSGSKKVFYDFCQVGLCNHLQQMHW----------FSEAVHFPRCHNISSTDDLTELCDDFRLTACLSLLR 495 (1105)
Q Consensus 427 f~~-~~fTtK~~~~~~~~~~~~vGLc~~L~~l~W----------f~e~~ffPRCy~l~~~dd~~~Fv~DfrlTAa~s~LK 495 (1105)
|++ ...|-| |+-..=+|.-+.-+.= +-..-+-|.||.+- ++...|++.|+.- ..-=+
T Consensus 134 ~p~~~~L~rk--------d~l~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~--~~~~~~v~e~~~~--~~~~~ 201 (497)
T KOG2157|consen 134 FPRRKELTRK--------DLLMKLIKRYLALLERSRLPKAQLEDYILLDYVETTFVLL--DEYKKLVEEYEED--SERSW 201 (497)
T ss_pred cccHHHhhhh--------HHhhhhHHHHHHhccccccchhhcccceeecccchhhhhh--hHHHHHHHHHHhc--cccce
Confidence 999 666666 2221222221111110 01125667788765 7788888888875 22234
Q ss_pred HHhh
Q psy9020 496 FVVY 499 (1105)
Q Consensus 496 ~~v~ 499 (1105)
||++
T Consensus 202 wIvK 205 (497)
T KOG2157|consen 202 WIVK 205 (497)
T ss_pred EEec
Confidence 5555
No 111
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=26.58 E-value=2e+02 Score=33.62 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=35.8
Q ss_pred EEEeCC--CCCCCC--cEEEEcChHHHHHHHhhcCC-------------CCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 761 WIVKPG--AKSRGR--GIQVMYKLEDIIQKITATNT-------------NDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 761 WILKPa--aGSRGR--GI~l~~sLeEIlk~l~~~~~-------------k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
|++||. .|++|. ||.+..+.+++.+....... .-..++||+++.- |+.+-+-+..
T Consensus 43 vVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-----g~E~~v~i~~ 114 (386)
T TIGR01016 43 VVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDI-----DKEYYLSIVI 114 (386)
T ss_pred EEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECccC-----CceEEEEEEE
Confidence 999998 444554 99999988887665532111 0135889998852 6666655543
No 112
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=26.50 E-value=2.4e+02 Score=33.04 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=34.5
Q ss_pred EEEeCCCCC--CCC--cEEEEcChHHHHHHHhhcCC-------------CCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKS--RGR--GIQVMYKLEDIIQKITATNT-------------NDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGS--RGR--GI~l~~sLeEIlk~l~~~~~-------------k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
+++||.... +|. ||.+..+.+++.+....... .-..++||+++. .|+.|-+.+.
T Consensus 43 vVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~-----~~~E~~vg~~ 113 (388)
T PRK00696 43 WVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGAD-----IAKEYYLSIV 113 (388)
T ss_pred EEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCCEEeEEEEEeccC-----CCceEEEEEE
Confidence 899997433 333 99999888887776532111 012478888884 2666666654
No 113
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=25.69 E-value=98 Score=33.21 Aligned_cols=43 Identities=19% Similarity=0.600 Sum_probs=33.6
Q ss_pred cccchhhHHHHHHHHHHHHhcC-cEEEEEc--CCh---HHHHHHHhCCc
Q psy9020 327 DIIFNKKLKYLKSLVETAIKSR-KTYTVLG--HFP---NIREAFRARGW 369 (1105)
Q Consensus 327 ~~i~~~rlk~~K~~ve~AiK~k-KIFsI~G--~YP---vIR~aLr~RGW 369 (1105)
..+..+|=+..-..+.++++++ ++|.+.| |.+ -|-..||+||+
T Consensus 206 ~~ll~~RN~~~~~~i~~~l~~~~~~fvvVGa~HL~G~~gvl~lLr~~Gy 254 (259)
T PF01963_consen 206 EVLLDERNRRWAEKIEELLKEGGTVFVVVGAGHLPGEDGVLDLLRKKGY 254 (259)
T ss_pred HHHHHHHhHHHHHHHHHHHhcCCCEEEEEcchhccchhhHHHHHHhCCc
Confidence 3455566666666677888888 9999999 777 67799999997
No 114
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=24.16 E-value=37 Score=39.56 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=18.5
Q ss_pred EEEEeCCCCCCCCcEEEEcChH----HHHHHHhhcCCCCCceEEe
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLE----DIIQKITATNTNDPRFVVQ 800 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLe----EIlk~l~~~~~k~~~yVVQ 800 (1105)
-|++||+.++.|+|+.+-.+++ ++.+.+.. ....||+|
T Consensus 289 ~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~---~P~~yVAQ 330 (330)
T PF04174_consen 289 ELVVKPADGYGGKGVYIGPKLSAERRALRAEILA---RPHRYVAQ 330 (330)
T ss_dssp GEEEEE--------EEEGGG--HHHHHHHHHHHH---SGGGEEEE
T ss_pred hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHh---CccCCccC
Confidence 5999999999999999877665 33333332 23479988
No 115
>KOG0368|consensus
Probab=22.73 E-value=5.3e+02 Score=36.31 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=25.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHh
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKIT 788 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~ 788 (1105)
..+|-+-|+.|+||..+.+.+++.....
T Consensus 242 vMIKASEGGGGKGIRkv~n~ddF~~lf~ 269 (2196)
T KOG0368|consen 242 VMIKASEGGGGKGIRKVENEDDFKALFK 269 (2196)
T ss_pred eEEEeccCCCCcceeeccchHHHHHHHH
Confidence 7899999999999999999998877664
No 116
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=22.59 E-value=72 Score=38.12 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=23.5
Q ss_pred eEEE-EEEEeccCCceEEEEeec-CCCCCc
Q psy9020 933 ELYG-ADFMLAQNFVPWLIEINS-GPCMAA 960 (1105)
Q Consensus 933 ELyG-~DFMLDEdgKPWLLEVNS-SPSLs~ 960 (1105)
.+|| |||.+|.++.+-|||+|+ .|+.-.
T Consensus 106 slyGRfDfa~dg~g~~KllE~NADTPT~L~ 135 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNADTPTILI 135 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecCCCCchHH
Confidence 4665 999999999999999999 677643
No 117
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=21.04 E-value=1.2e+03 Score=26.02 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=25.2
Q ss_pred CceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
..|...++||... ++++|+=|+-..|+-..
T Consensus 193 ~~f~fvRVDlY~~-~~~iyFGElTf~p~~G~ 222 (239)
T PF14305_consen 193 KGFPFVRVDLYNV-DGKIYFGELTFTPGAGF 222 (239)
T ss_pred cCCCEEEEEEEEe-CCcEEEEeeecCCCCcC
Confidence 3488899999876 66899999999998773
No 118
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=20.77 E-value=79 Score=36.42 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=20.1
Q ss_pred EEEEEEeccCCceEEEEeecCCC
Q psy9020 935 YGADFMLAQNFVPWLIEINSGPC 957 (1105)
Q Consensus 935 yG~DFMLDEdgKPWLLEVNSSPS 957 (1105)
=.|||+|..+.+.|+||+|.-=+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 47999999999999999998544
No 119
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=20.51 E-value=53 Score=37.98 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=27.7
Q ss_pred hHHHHHHHhCCccccccCCCCCCCCCCCCcchhHHHHhhccCC
Q psy9020 358 PNIREAFRARGWLEKYHDISEEYPRPTNDSKDEHMVSRLLRDA 400 (1105)
Q Consensus 358 PvIR~aLr~RGWVEKk~~~~~~~~~~~~~~~d~~~~sr~l~~~ 400 (1105)
|+=|+.+++|||=|=-+..-..-...+--+.+.+++.|+|..+
T Consensus 3 P~t~~em~~rGWd~lDvilVtGDAYVDHPsFG~AiIgR~Le~~ 45 (302)
T PF08497_consen 3 PTTREEMKARGWDELDVILVTGDAYVDHPSFGAAIIGRVLEAH 45 (302)
T ss_pred CCCHHHHHHcCCccccEEEEeCcccccCcchhHHHHHHHHHHc
Confidence 7779999999997754444322222222344688888888754
Done!