Query psy9020
Match_columns 1105
No_of_seqs 344 out of 1248
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:00:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 3.5E-51 1.2E-55 455.5 23.6 216 755-989 144-366 (380)
2 4fu0_A D-alanine--D-alanine li 99.2 3.6E-10 1.2E-14 123.4 17.7 164 761-985 180-352 (357)
3 3se7_A VANA; alpha-beta struct 99.1 2.4E-09 8.1E-14 116.1 18.6 169 760-983 167-343 (346)
4 1e4e_A Vancomycin/teicoplanin 99.1 5.2E-09 1.8E-13 112.9 19.8 146 760-962 167-316 (343)
5 4eg0_A D-alanine--D-alanine li 99.1 2.1E-09 7.2E-14 114.6 16.3 144 761-964 149-292 (317)
6 2i87_A D-alanine-D-alanine lig 99.0 3.3E-09 1.1E-13 115.5 16.9 144 761-962 174-317 (364)
7 3e5n_A D-alanine-D-alanine lig 99.0 2.2E-09 7.6E-14 119.2 15.0 166 761-983 201-372 (386)
8 3tqt_A D-alanine--D-alanine li 99.0 6.5E-09 2.2E-13 115.2 17.0 165 761-983 183-354 (372)
9 2fb9_A D-alanine:D-alanine lig 99.0 8.6E-09 2.9E-13 110.9 17.3 144 760-962 152-296 (322)
10 3i12_A D-alanine-D-alanine lig 99.0 9.6E-09 3.3E-13 112.6 17.4 147 761-964 182-328 (364)
11 3k3p_A D-alanine--D-alanine li 99.0 3.7E-09 1.3E-13 117.7 13.6 165 761-983 204-374 (383)
12 1iow_A DD-ligase, DDLB, D-ALA\ 98.9 4.4E-09 1.5E-13 109.6 13.1 141 761-962 141-281 (306)
13 3lwb_A D-alanine--D-alanine li 98.9 1.3E-08 4.4E-13 112.5 14.2 172 761-984 191-369 (373)
14 3r5x_A D-alanine--D-alanine li 98.9 1.1E-08 3.8E-13 107.5 12.7 158 761-983 136-301 (307)
15 1ehi_A LMDDL2, D-alanine:D-lac 98.9 5.4E-08 1.8E-12 107.1 18.6 149 761-962 177-327 (377)
16 1i7n_A Synapsin II; synapse, p 98.8 1.8E-08 6.1E-13 110.2 13.2 141 760-971 154-297 (309)
17 2r85_A PURP protein PF1517; AT 98.8 3.2E-08 1.1E-12 104.4 14.0 151 760-959 128-291 (334)
18 2pvp_A D-alanine-D-alanine lig 98.7 4.5E-08 1.5E-12 108.1 13.2 143 760-962 187-331 (367)
19 2p0a_A Synapsin-3, synapsin II 98.7 4.1E-08 1.4E-12 108.9 12.2 132 760-962 171-305 (344)
20 1pk8_A RAT synapsin I; ATP bin 98.7 6.2E-08 2.1E-12 110.2 13.4 141 760-971 266-409 (422)
21 1uc8_A LYSX, lysine biosynthes 98.7 2.3E-08 8E-13 102.4 6.8 129 761-960 126-258 (280)
22 3vot_A L-amino acid ligase, BL 98.6 2.8E-07 9.6E-12 101.9 14.5 158 761-982 148-319 (425)
23 1z2n_X Inositol 1,3,4-trisphos 98.6 3.4E-07 1.2E-11 97.0 14.1 48 761-821 138-188 (324)
24 2q7d_A Inositol-tetrakisphosph 98.5 1.5E-06 5.3E-11 95.8 17.6 151 760-964 164-319 (346)
25 3ax6_A Phosphoribosylaminoimid 98.5 5.5E-07 1.9E-11 98.0 12.7 153 761-983 135-288 (380)
26 2z04_A Phosphoribosylaminoimid 98.5 3.6E-07 1.2E-11 98.8 10.6 152 761-983 129-281 (365)
27 3mjf_A Phosphoribosylamine--gl 98.5 8E-07 2.7E-11 99.8 13.8 44 761-804 145-194 (431)
28 3lp8_A Phosphoribosylamine-gly 98.4 1E-06 3.5E-11 99.4 13.0 52 761-818 161-218 (442)
29 3k5i_A Phosphoribosyl-aminoimi 98.4 2.9E-06 1E-10 94.4 16.4 154 761-983 163-318 (403)
30 2yw2_A Phosphoribosylamine--gl 98.4 1.4E-06 4.7E-11 96.2 13.6 53 761-819 140-198 (424)
31 4e4t_A Phosphoribosylaminoimid 98.4 4.2E-06 1.4E-10 93.9 16.7 156 761-984 174-331 (419)
32 3q2o_A Phosphoribosylaminoimid 98.4 4E-06 1.4E-10 92.1 15.2 151 761-984 150-306 (389)
33 3aw8_A PURK, phosphoribosylami 98.3 8E-06 2.7E-10 88.6 16.9 155 761-983 134-289 (369)
34 3ouz_A Biotin carboxylase; str 98.3 3.7E-06 1.3E-10 93.9 14.5 158 761-983 159-323 (446)
35 4dim_A Phosphoribosylglycinami 98.3 3.6E-06 1.2E-10 92.0 13.5 54 761-820 147-202 (403)
36 1ulz_A Pyruvate carboxylase N- 98.3 1.8E-06 6.1E-11 96.2 11.3 158 761-983 154-318 (451)
37 2xcl_A Phosphoribosylamine--gl 98.3 2E-06 6.7E-11 95.0 11.4 54 761-822 140-199 (422)
38 2vpq_A Acetyl-COA carboxylase; 98.3 6.1E-06 2.1E-10 92.0 14.9 158 761-983 154-319 (451)
39 1gsa_A Glutathione synthetase; 98.3 4.5E-06 1.6E-10 86.7 12.2 56 761-821 157-214 (316)
40 1kjq_A GART 2, phosphoribosylg 98.2 4.2E-06 1.4E-10 90.9 11.4 153 761-982 151-308 (391)
41 2ip4_A PURD, phosphoribosylami 98.2 1.1E-05 3.7E-10 89.1 14.6 54 761-822 139-194 (417)
42 3orq_A N5-carboxyaminoimidazol 98.2 1.1E-05 3.8E-10 88.7 14.2 52 761-821 148-200 (377)
43 3glk_A Acetyl-COA carboxylase 98.2 1.2E-05 4.1E-10 93.7 14.8 157 761-982 231-390 (540)
44 3n6r_A Propionyl-COA carboxyla 98.2 2.3E-06 7.9E-11 102.1 9.0 158 761-983 155-319 (681)
45 3jrx_A Acetyl-COA carboxylase 98.1 1.5E-05 5E-10 94.1 14.4 157 761-982 247-406 (587)
46 1vkz_A Phosphoribosylamine--gl 98.1 1.8E-05 6E-10 87.9 14.0 44 761-804 144-193 (412)
47 2dwc_A PH0318, 433AA long hypo 98.1 2E-05 7E-10 87.3 14.4 135 761-960 159-300 (433)
48 2w70_A Biotin carboxylase; lig 98.1 8.3E-06 2.8E-10 90.9 11.2 157 761-983 156-319 (449)
49 3ln6_A Glutathione biosynthesi 98.1 3.3E-06 1.1E-10 101.9 8.3 53 761-821 523-578 (750)
50 3vmm_A Alanine-anticapsin liga 98.1 1.7E-05 6E-10 90.6 13.2 161 761-981 177-357 (474)
51 2pn1_A Carbamoylphosphate synt 98.1 1.1E-05 3.7E-10 85.6 10.5 50 760-819 151-200 (331)
52 2qk4_A Trifunctional purine bi 98.1 1.1E-05 3.6E-10 90.4 11.0 54 761-822 167-226 (452)
53 2yrx_A Phosphoribosylglycinami 98.1 1.3E-05 4.3E-10 89.9 11.4 44 761-804 161-210 (451)
54 1w96_A ACC, acetyl-coenzyme A 98.1 2.3E-05 7.9E-10 90.7 13.8 156 761-982 237-397 (554)
55 3df7_A Putative ATP-grAsp supe 98.0 1.8E-05 6E-10 85.2 11.6 42 760-822 135-176 (305)
56 2dzd_A Pyruvate carboxylase; b 98.0 3.7E-05 1.3E-09 86.1 13.8 56 761-823 160-221 (461)
57 3ln7_A Glutathione biosynthesi 97.9 1.9E-05 6.4E-10 95.7 10.2 53 761-821 528-584 (757)
58 1a9x_A Carbamoyl phosphate syn 97.8 0.00018 6.3E-09 89.7 14.9 54 761-819 712-767 (1073)
59 3u9t_A MCC alpha, methylcroton 97.7 2E-05 6.9E-10 94.0 6.0 158 761-983 181-345 (675)
60 4ffl_A PYLC; amino acid, biosy 97.7 0.00027 9.2E-09 76.5 12.7 45 760-817 127-171 (363)
61 3va7_A KLLA0E08119P; carboxyla 97.6 0.00012 4.2E-09 92.7 11.2 158 761-983 183-348 (1236)
62 3eth_A Phosphoribosylaminoimid 97.6 0.0003 1E-08 77.9 12.9 68 906-984 202-270 (355)
63 1a9x_A Carbamoyl phosphate syn 97.6 0.00042 1.4E-08 86.5 14.4 140 761-964 166-310 (1073)
64 3hbl_A Pyruvate carboxylase; T 97.6 0.00031 1E-08 88.6 13.0 156 761-982 158-320 (1150)
65 2qf7_A Pyruvate carboxylase pr 97.5 0.00024 8.1E-09 89.7 10.8 157 761-982 174-338 (1165)
66 2r7k_A 5-formaminoimidazole-4- 97.4 0.00066 2.3E-08 75.6 11.6 52 906-959 267-318 (361)
67 3t7a_A Inositol pyrophosphate 97.3 0.00071 2.4E-08 74.9 10.3 62 906-978 250-311 (330)
68 2pbz_A Hypothetical protein; N 96.7 0.0028 9.7E-08 69.7 7.9 41 760-804 127-167 (320)
69 3n6x_A Putative glutathionylsp 96.1 0.0038 1.3E-07 72.4 5.2 78 760-844 364-453 (474)
70 2cqy_A Propionyl-COA carboxyla 95.0 0.021 7.2E-07 50.8 4.7 46 761-806 48-99 (108)
71 3k1t_A Glutamate--cysteine lig 82.2 2.4 8.1E-05 48.6 7.5 116 734-858 254-379 (432)
72 2io8_A Bifunctional glutathion 80.8 0.72 2.5E-05 55.2 3.0 59 761-821 530-588 (619)
73 2vob_A Trypanothione synthetas 78.8 1.2 4.2E-05 53.6 4.1 57 761-819 545-601 (652)
74 1wr2_A Hypothetical protein PH 65.7 2.5 8.7E-05 43.6 2.3 53 761-818 59-126 (238)
75 2fp4_B Succinyl-COA ligase [GD 48.8 27 0.00092 39.5 7.0 53 761-818 43-119 (395)
76 2nu8_B SCS-beta, succinyl-COA 30.6 83 0.0028 35.5 7.2 44 761-804 43-103 (388)
77 3n6x_A Putative glutathionylsp 27.9 46 0.0016 38.9 4.6 29 930-958 140-169 (474)
78 3kal_A Homoglutathione synthet 24.5 1.9E+02 0.0066 34.1 8.9 47 928-974 145-193 (499)
79 3ufx_B Succinyl-COA synthetase 22.3 1.3E+02 0.0043 34.1 6.7 44 761-804 42-95 (397)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=3.5e-51 Score=455.46 Aligned_cols=216 Identities=30% Similarity=0.484 Sum_probs=162.8
Q ss_pred CCCccEEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCccc--CCeEEEEEEEEEEeecCCcEEEE
Q psy9020 755 DGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLI--YNTKFDIRQWFLVTSAYPLTVWM 832 (1105)
Q Consensus 755 dG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLI--dGRKFDIRVYVLVTS~nPLrVWl 832 (1105)
+|.+++||+||+++++|+||.+++++++|.+++... ...||||+||++|||| +|||||||+|||||+ ||++|+
T Consensus 144 ~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~ 218 (380)
T 3tig_A 144 NEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYL 218 (380)
T ss_dssp TTCCCCEEEEESCC----CCBCCSCSHHHHHHHHHH---TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEE
T ss_pred cCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---CCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEE
Confidence 577889999999999999999999999998887532 3579999999999999 999999999999998 999999
Q ss_pred EccceeeccccCCccCCCC-cccccccccccchhhhccc-CCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhH
Q psy9020 833 YKESYLRFCSQNYSLVNMH-ESVHLSNNITNNAIQCKYQ-NGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGM 910 (1105)
Q Consensus 833 YregyVRFASq~Ysl~NLD-~siHLTN~ltN~SIQK~~~-n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqI 910 (1105)
|++||+|||+.+|++.+++ .++|||| +||||++. ++++ ...+++|++++|++||++.+. ..|.+.|+++|
T Consensus 219 y~~g~~Rfa~~~y~~~~~~~~~~HLTN----~~iqk~~~~~y~~---~~~g~~~~~~~f~~yL~~~~~-~~~~~~i~~~I 290 (380)
T 3tig_A 219 YREGVLRTSSEPYSDTNFQDMTSHLTN----HCIQKEHSKNYGR---YEEGNEMFFEEFNQYLVTSLN-INLENSILCQI 290 (380)
T ss_dssp CSCCEEEECC-----------------------------------------CCBCHHHHHHHHSTTSS-CCHHHHTHHHH
T ss_pred EcCCEEEecCCCcCccchhhhhhhccc----ccccccccccccc---ccCCCcCcHHHHHHHHHHhcC-ccHHHHHHHHH
Confidence 9999999999999999885 6899999 99999754 4432 235789999999999986543 45888899999
Q ss_pred HHHHHHHHHHhhhccCC---CCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcCCCCc
Q psy9020 911 KDGIVGSLLASQDSFDH---RKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRREDK 987 (1105)
Q Consensus 911 KeiIi~tLlAaqd~l~~---rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr~~d~ 987 (1105)
+++++.++++++..+.. +.+|||+||+|||||++++|||||||++|++.. .+.++|++++++++||+.+++
T Consensus 291 ~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavdp~f~~ 364 (380)
T 3tig_A 291 KEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAISSVFPL 364 (380)
T ss_dssp HHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTTTTSCC
T ss_pred HHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcccccCC
Confidence 99999999999887764 368999999999999999999999999999975 388899999999999998876
Q ss_pred cC
Q psy9020 988 MA 989 (1105)
Q Consensus 988 ~~ 989 (1105)
..
T Consensus 365 ~~ 366 (380)
T 3tig_A 365 NE 366 (380)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.18 E-value=3.6e-10 Score=123.36 Aligned_cols=164 Identities=13% Similarity=0.164 Sum_probs=104.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeec---CCcEEEEEccce
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSA---YPLTVWMYKESY 837 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~---nPLrVWlYregy 837 (1105)
+|+||..++.|+||.++++.+++...+......+..++||+||. |+.+.+.+. .... .+........++
T Consensus 180 vvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~------G~e~~v~vl--~~~~~~~~~v~~~~~~~~~ 251 (357)
T 4fu0_A 180 LFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN------GFEVGCAVL--GIDELIVGRVDEIELSSGF 251 (357)
T ss_dssp EEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC------SEEEEEEEE--ESSSEEECCCEEEEECHHH
T ss_pred EEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC------CEEEEEEEE--ecCCceEEEEEEEEccccc
Confidence 99999999999999999999999887765445567899999996 777666543 2110 011111111111
Q ss_pred eeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 838 LRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 838 VRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
.++.. ++..... . ...+....+.+..+|++++..+
T Consensus 252 ~d~~~-------------------------k~~~~~~-------~-------------~~~pa~l~~~~~~~i~~~A~~~ 286 (357)
T 4fu0_A 252 FDYTE-------------------------KYTLKSS-------K-------------IYMPARIDAEAEKRIQEAAVTI 286 (357)
T ss_dssp HTSCS-------------------------BCSSCCE-------E-------------EESSCSCCHHHHHHHHHHHHHH
T ss_pred ccccc-------------------------cccCCCc-------e-------------EecCCCCCHHHHHHHHHHHHHH
Confidence 11110 0100000 0 0001111233456677888777
Q ss_pred HHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcCCC
Q psy9020 918 LLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDRRE 985 (1105)
Q Consensus 918 LlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr~~ 985 (1105)
+.+. +|.++.++||++|++|++|+||||+.|+|++.+-+.... ++.|++.++.+.++|..
T Consensus 287 ~~aL--------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~aler~~ 352 (357)
T 4fu0_A 287 YKAL--------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLYVELEH 352 (357)
T ss_dssp HHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTTC----
T ss_pred HHHh--------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHHhcccc
Confidence 7776 778999999999999999999999999999876443322 35788888888888753
No 3
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.09 E-value=2.4e-09 Score=116.07 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=99.0
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-+|+||..++.|+||.++++.+++...+......+..++||+||+ |+ ++++.++.....+ .++ ...+
T Consensus 167 PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~~~~~-~~~----~~~e 233 (346)
T 3se7_A 167 PVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGNGPEL-ITG----EVDQ 233 (346)
T ss_dssp SEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEETTEE-EEC----CCEE
T ss_pred CEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEecCCCe-EEE----eeEE
Confidence 489999999999999999999998887755444467899999997 65 5666665442211 111 0111
Q ss_pred ccc--cCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 840 FCS--QNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 840 FAS--q~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
... .-|+. |-. ...+|..+... . ..+......+..+|++++..+
T Consensus 234 ~~~~~~~~d~-------~q~-------~~~ky~~~~~~-------~-------------~~pa~l~~~~~~~i~~~a~~~ 279 (346)
T 3se7_A 234 ITLSHGFFKI-------HQE-------STPESGSDNSA-------V-------------TVPADISTTSRSLVQDTAKAV 279 (346)
T ss_dssp ECCC----------------------------CGGGSC-------E-------------ESSCCCCHHHHHHHHHHHHHH
T ss_pred EecCCCCcCc-------ccc-------hhccccCCCee-------E-------------EeCCCCCHHHHHHHHHHHHHH
Confidence 110 00000 000 00000000000 0 000111223344567777777
Q ss_pred HHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcC
Q psy9020 918 LLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 918 LlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr 983 (1105)
+.+. ++.+.+++||++|+++++|+||||+.|+|+..+.+.... ...++..+++..+.+
T Consensus 280 ~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~li~~a~~~ 343 (346)
T 3se7_A 280 YRAL--------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRLVSLALAG 343 (346)
T ss_dssp HHHH--------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred HHHh--------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 6665 566899999999999999999999999998776443211 235666666665544
No 4
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.06 E-value=5.2e-09 Score=112.94 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=89.5
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-+|+||..++.|+||.++++.+++...+.........++||+||+ |+. +++.++..... ..+. --+-.+
T Consensus 167 PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~E--~~v~vl~~~~~-~~~~--~~~ei~ 235 (343)
T 1e4e_A 167 PVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GCE--VGCAVLGNSAA-LVVG--EVDQIR 235 (343)
T ss_dssp CEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SEE--EEEEEEEETTC-CEEC--CCEEEE
T ss_pred CEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------CeE--EEEEEEeCCCC-eEEe--eeEEEe
Confidence 499999999999999999999998877754333457899999997 764 55555543321 1111 000011
Q ss_pred ccccCCccCCCCcccccccccccchhhhccc----CCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQ----NGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIV 915 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~----n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi 915 (1105)
....-|+ ...++. .+...... +....+.+.++|++++.
T Consensus 236 ~~~~~~~------------------~~~k~~~~~~~g~~~~~~--------------------p~~l~~~~~~~i~~~a~ 277 (343)
T 1e4e_A 236 LQYGIFR------------------IHQEVEPEKGSENAVITV--------------------PADLSAEERGRIQETVK 277 (343)
T ss_dssp ESSSCCC------------------GGGSSSGGGCCSSEEECS--------------------SCSSCHHHHHHHHHHHH
T ss_pred eCCCccC------------------HhhcccccCCCCCeeEEe--------------------CCCCCHHHHHHHHHHHH
Confidence 1111111 011110 00000000 00111233455677777
Q ss_pred HHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 916 GSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 916 ~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
.++.+. ++.+.+++||++|++|++||||||+.|+++..+
T Consensus 278 ~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 278 KIYKTL--------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp HHHHHT--------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHc--------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 776665 577899999999999999999999999998765
No 5
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.06 E-value=2.1e-09 Score=114.57 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=82.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++.+.+.........++||+||+. |+ ++++.|+.....|.......+.+..+
T Consensus 149 vvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~~~ 221 (317)
T 4eg0_A 149 LFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFYDY 221 (317)
T ss_dssp EEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-------
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCceech
Confidence 999999999999999999999988777543344678999999984 54 45555553222222111101110000
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
..++..+... ...+......+..+|++++..++.+
T Consensus 222 -------------------------~~k~~~g~~~--------------------~~~P~~l~~~~~~~l~~~a~~~~~~ 256 (317)
T 4eg0_A 222 -------------------------HAKYVANDTQ--------------------YLIPCGLPAEQETELKRIARRAFDV 256 (317)
T ss_dssp ---------------------------------CE--------------------EESSCSSCHHHHHHHHHHHHHHHHT
T ss_pred -------------------------hhcccCCCee--------------------EEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000011122334566666666555
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChh
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~V 964 (1105)
. ++.+..++||++|+++++|+||||..|+|+..+.+
T Consensus 257 l--------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 257 L--------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp T--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred h--------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 4 56678999999999999999999999999987654
No 6
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.03 E-value=3.3e-09 Score=115.50 Aligned_cols=144 Identities=18% Similarity=0.270 Sum_probs=87.3
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++...+......+..++||+||+ |+ ++++-++... ++ .+ ...+-+..
T Consensus 174 vvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~e~~~ 241 (364)
T 2i87_A 174 VFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLGND-YP-EA--TWPGEVVK 241 (364)
T ss_dssp EEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEESS-SC-EE--CCCEEECC
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-EE--eeeEEEec
Confidence 99999999999999999999988877654322356899999998 65 5666665432 11 11 00010100
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
...-| .+..++..+... .-.+......+.++|++++..++.+
T Consensus 242 ~~~~~------------------~~~~k~~~g~~~--------------------~~~pa~l~~~~~~~i~~~a~~~~~a 283 (364)
T 2i87_A 242 DVAFY------------------DYKSKYKDGKVQ--------------------LQIPADLDEDVQLTLRNMALEAFKA 283 (364)
T ss_dssp SCCC-----------------------------CC--------------------EESSCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCcC------------------CHHHcccCCCee--------------------EEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 111111100000 0001111223445667777777666
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
. ++.+.+++||++|++|++||||||+.|+++..+
T Consensus 284 l--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 284 T--------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp T--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred c--------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 5 566899999999999999999999999998765
No 7
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.02 E-value=2.2e-09 Score=119.19 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=99.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++...+......+..++||+||. |+. +++-|+... . +.+....+ +.
T Consensus 201 vvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~E--~~v~vl~~~-~-~~~~~~ge--i~- 267 (386)
T 3e5n_A 201 LFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA------GRE--IECAVLGNA-V-PHASVCGE--VV- 267 (386)
T ss_dssp EEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC------SEE--EEEEEECSS-S-CEEEEEEE--EC-
T ss_pred EEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC------CeE--EEEEEEeCC-C-ceEEEeEE--EE-
Confidence 89999999999999999999998887755444467899999997 654 444444322 1 22211111 11
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
+...| +.+..++.... . .....+......+..+|++++..++.+
T Consensus 268 ~~~~~-----------------~d~~~ky~~~~--------~-----------~~~~~Pa~l~~~~~~~i~~~a~~~~~a 311 (386)
T 3e5n_A 268 VHDAF-----------------YSYATKYISEH--------G-----------AEIVIPADIDAQTQQRIQQIAVQAYQA 311 (386)
T ss_dssp C-----------------------------------------------------CEESSCSSCHHHHHHHHHHHHHHHHH
T ss_pred eCCcc-----------------cchhcccCCCC--------C-----------eEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 11100 00011110000 0 000001111233445677777777766
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr 983 (1105)
. +|.++.++||++|++|++|+||||+.|+|+..+.+.... ...++..+++..+.+
T Consensus 312 L--------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r 372 (386)
T 3e5n_A 312 L--------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALER 372 (386)
T ss_dssp H--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred h--------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 6 677899999999999999999999999999876543221 345666666666554
No 8
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.98 E-value=6.5e-09 Score=115.22 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=97.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++...+......+..++||+||+ |+.+.+ -|+... .+ .+. --+-+..
T Consensus 183 vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E~~v--~vl~~~-~~-~~~--~~~ei~~ 250 (372)
T 3tqt_A 183 LFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GREIEC--AVLGNG-AP-KAS--LPGEIIP 250 (372)
T ss_dssp EEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SEEEEE--EEEESS-SC-EEC--CCEEEEC
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CEEEEE--EEEeCC-Cc-eEe--eeEEEec
Confidence 99999999999999999999999887754444467899999997 765444 444322 11 110 0000011
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCC-CCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGN-RHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~-r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
...-| .++.+|..+. .. ...+......+..+|++++..++.
T Consensus 251 ~~~~~------------------d~~~ky~~g~~~~--------------------~~~Pa~l~~~~~~~i~~~a~~~~~ 292 (372)
T 3tqt_A 251 HHDYY------------------SYDAKYLDPNGAT--------------------TTTSVDLSESVTKQIQQIAIDAFK 292 (372)
T ss_dssp C---------------------------------CE--------------------EESCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcc------------------chhhcccCCCceE--------------------EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00001 1111111000 00 000111122344567777777776
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr 983 (1105)
+. +|.++.++||++|++++|||||||+.|+|+..+-+.... .+.++..++...+.|
T Consensus 293 aL--------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r 354 (372)
T 3tqt_A 293 MV--------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDR 354 (372)
T ss_dssp HT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred Hh--------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 65 677999999999999999999999999999876542211 234555555555443
No 9
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.98 E-value=8.6e-09 Score=110.87 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=87.0
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCC-eEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYN-TKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdG-RKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
-+|+||..++.|+||.++++.+++...+.........++||+||+ | +. +++-|+... ++ .+... +-+
T Consensus 152 PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~E--~~v~vl~~~-~~-~~~~~--~ei 219 (322)
T 2fb9_A 152 PFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS------PVRE--LEVGVLGNV-FG-EASPV--GEV 219 (322)
T ss_dssp CEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS------SCEE--EEEEEESSS-SC-EEEEE--EEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC------CCee--EEEEEEeCC-Cc-eEeee--EEE
Confidence 499999999999999999999998887754433457899999997 5 54 555554322 11 11000 000
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
.....-|+ ...++..+......| ....+.+..+|++++..++
T Consensus 220 ~~~~~~~~------------------~~~k~~~g~~~~~~P--------------------a~l~~~~~~~i~~~a~~~~ 261 (322)
T 2fb9_A 220 RYEAPFYD------------------YETKYTPGRAELLIP--------------------APLDPGTQETVQELALKAY 261 (322)
T ss_dssp EEECCEEE------------------TTTEEECCEEEEESS--------------------CCCCTTHHHHHHHHHHHHH
T ss_pred eeCCCccC------------------HHHcccCCCeEEEeC--------------------CCCCHHHHHHHHHHHHHHH
Confidence 00000011 000110000000000 0011223445677777777
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
.+. ++.+..++||++| ++++||||||+.|+++..+
T Consensus 262 ~al--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 262 KVL--------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp HHH--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSC
T ss_pred HHh--------CCceEEEEEEEEE-CCcEEEEEEECCCCCCccc
Confidence 665 5668999999999 9999999999999998765
No 10
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.97 E-value=9.6e-09 Score=112.56 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=88.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|.||.++++.+++...+......+..++||+||+ |+ ++++-|+... .+ .+....+ +..
T Consensus 182 vvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~~-~~~~~~e--i~~ 249 (364)
T 3i12_A 182 LFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK------GR--EIECAVLGND-NP-QASTCGE--IVL 249 (364)
T ss_dssp EEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEEESS-SC-EEEEEEE--EEC
T ss_pred EEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC------Ce--EEEEEEEeCC-Cc-eEeeeEE--Eec
Confidence 89999999999999999999988776643222246899999997 65 4455554332 11 1111111 111
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
...-|+. ..+|..+... . ...+......+..+|++++..++.+
T Consensus 250 ~~~~~~~------------------~~ky~~~~~~------~-------------~~~Pa~l~~~~~~~i~~~a~~~~~a 292 (364)
T 3i12_A 250 NSEFYAY------------------DTKYIDDNGA------Q-------------VVVPAQIPSEVNDKIRAIAIQAYQT 292 (364)
T ss_dssp CTTCC--------------------TTTTSGGGGC------E-------------EESSCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCH------------------HHcccCCCce------E-------------EEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1111110 0000000000 0 0000111223445567777777666
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChh
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~V 964 (1105)
. ++.+..++||++|++|++||||||+.|+|+..+.+
T Consensus 293 l--------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~ 328 (364)
T 3i12_A 293 L--------GCAGMARVDVFLTADNEVVINEINTLPGFTNISMY 328 (364)
T ss_dssp T--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred h--------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHH
Confidence 5 67789999999999999999999999999977644
No 11
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.95 E-value=3.7e-09 Score=117.68 Aligned_cols=165 Identities=18% Similarity=0.255 Sum_probs=89.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++.+.+......+..++||+||+ |+.+.+- |+.. ....++...+. .
T Consensus 204 vvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~------G~E~~v~--vl~d--~~~~~~~~~ei---~ 270 (383)
T 3k3p_A 204 VFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD------AREIEVG--ILGN--TDVKTTLPGEI---V 270 (383)
T ss_dssp EEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SEEEEEE--EEES--SSCEECCCEEE---C
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC------CeEEEEE--EEeC--CCeeEEeeEEE---e
Confidence 99999999999999999999998777643222356899999997 7655444 4422 21211110000 0
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
....| +....+|..+... ...+....+.+..+|++++..++.+
T Consensus 271 ~~~~~-----------------~d~~~ky~~g~~~--------------------~~~Pa~l~~~~~~~i~~~a~~~~~a 313 (383)
T 3k3p_A 271 KDVAF-----------------YDYEAKYIDNKIT--------------------MAIPAEIDPVIVEKMRDYAATAFRT 313 (383)
T ss_dssp ----------------------------------C--------------------EESSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCc-----------------cchhhcccCCCee--------------------EEecCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 0011111100000 0001111233445667777777666
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr 983 (1105)
. +|.++.++||++|+++++||||||+.|+|+..+.+.... ...++..+++..+.+
T Consensus 314 L--------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 314 L--------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp T--------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred c--------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5 677899999999999999999999999999866443221 345566666665544
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.95 E-value=4.4e-09 Score=109.63 Aligned_cols=141 Identities=14% Similarity=0.240 Sum_probs=85.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++...+.........++||+||+ |+ ++|+.++ . + +++ ..++.
T Consensus 141 ~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~--~-g--~~~----~~~~~ 203 (306)
T 1iow_A 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS------GP--EFTVAIL--G-E--EIL----PSIRI 203 (306)
T ss_dssp EEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC------CC--EEEEEEE--T-T--EEC----CCEEE
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE--C-C--Ccc----ceEEE
Confidence 99999999999999999999988877754322356899999997 54 6677665 1 1 110 01111
Q ss_pred cccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHHH
Q psy9020 841 CSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLA 920 (1105)
Q Consensus 841 ASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLlA 920 (1105)
.... . . +....++..+......| ......+.+++++++..++.+
T Consensus 204 ~~~~----~------~------~~~~~~~~~g~~~~~~p--------------------~~l~~~~~~~i~~~a~~~~~~ 247 (306)
T 1iow_A 204 QPSG----T------F------YDYEAKFLSDETQYFCP--------------------AGLEASQEANLQALVLKAWTT 247 (306)
T ss_dssp ECSS----S------S------SCHHHHHTCSCCEEESS--------------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred EeCC----C------e------EchhheecCCCeeEEcC--------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 1110 0 0 00011111100000000 001122334566666666655
Q ss_pred hhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 921 SQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 921 aqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
. ++.+.+|+||++|++|++||||||..|++...+
T Consensus 248 l--------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 248 L--------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp H--------TCCSEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred c--------CCceEEEEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 5 567789999999999999999999999998654
No 13
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.3e-08 Score=112.52 Aligned_cols=172 Identities=16% Similarity=0.227 Sum_probs=99.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceeec
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRF 840 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRF 840 (1105)
+|+||..++.|+||.++++.+++...+......+..+|||+||+ |+. +++-|+........++ --+-++.
T Consensus 191 vvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E--~~v~vl~~~~~~~~~~--~~~ei~~ 260 (373)
T 3lwb_A 191 VFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GRE--LECGVLEMPDGTLEAS--TLGEIRV 260 (373)
T ss_dssp EEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EEE--EEEEEEECTTSCEEEC--CCEEEEC
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------CeE--EEEEEEECCCCceEEe--eeeEEEc
Confidence 89999999999999999999998877754333467899999998 654 4444443321100111 1111111
Q ss_pred cc-cCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 841 CS-QNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 841 AS-q~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
.. .. ...+ - +.+..+|..+... .-.+......+..+|++++..++.
T Consensus 261 ~~~~~-------~~~~--~----~d~~~ky~~~~~~--------------------~~~Pa~l~~~~~~~i~~~a~~~~~ 307 (373)
T 3lwb_A 261 AGVRG-------REDS--F----YDFATKYLDDAAE--------------------LDVPAKVDDQVAEAIRQLAIRAFA 307 (373)
T ss_dssp CSTTC-------SEES--S----SCHHHHHTCTTCE--------------------EESSCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCC-------cccc--c----cchhhcccCCCce--------------------EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 10 00 0000 0 1111111111000 000111123344567777777776
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHH------HHHHHHHHHHhhhcCC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARL------CAQVLEDVIKVVVDRR 984 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~L------k~qVLeDtLkVVVDr~ 984 (1105)
+. +|.++.++||++|+++. ||||||+.|+|+..+-+.... .+.++..+++..+.|.
T Consensus 308 aL--------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r~ 369 (373)
T 3lwb_A 308 AI--------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETTLARG 369 (373)
T ss_dssp HT--------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred Hh--------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHhhh
Confidence 66 67789999999999999 999999999999766432211 3456666666666543
No 14
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.87 E-value=1.1e-08 Score=107.51 Aligned_cols=158 Identities=16% Similarity=0.336 Sum_probs=87.4
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEee-cCCcEEEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTS-AYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS-~nPLrVWlYregyVR 839 (1105)
+|+||..++.|+||.++++.+++...+.........++||+||+ |+ ++++.++ .+ .-|.........+.
T Consensus 136 ~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------G~--e~~v~v~-~g~~~~~~~~~~~~~~~- 205 (307)
T 3r5x_A 136 LVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK------GE--EITCSIF-DGKQLPIISIRHAAEFF- 205 (307)
T ss_dssp EEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEE-TTEECCCEEEEEEEEEE-
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC------CE--EEEEEEE-CCEEeeEEEEEcCCccc-
Confidence 99999999999999999999888776643222246899999998 64 5666653 21 11111000000000
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCC-CCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGN-RHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~-r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
.|. .+ +. ..+. ..| ......+..+|++++..++
T Consensus 206 ----~~~----------~~----~~-----~~g~~~~p-----------------------~~l~~~~~~~i~~~a~~~~ 239 (307)
T 3r5x_A 206 ----DYN----------AK----YD-----DASTIEEV-----------------------IELPAELKERVNKASLACY 239 (307)
T ss_dssp ----TTE----------EE----EE-----EEEEEEEE-----------------------CCCCHHHHHHHHHHHHHHH
T ss_pred ----Chh----------hc----CC-----CCCCeEec-----------------------CCCCHHHHHHHHHHHHHHH
Confidence 000 00 00 0000 000 0011223344566666666
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHH--HH----HHHHHHHHHHhhhcC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTA--RL----CAQVLEDVIKVVVDR 983 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~--~L----k~qVLeDtLkVVVDr 983 (1105)
.+. ++.+..++||++| ++++||||||..|+++..+.+.. .. ...++..+++..+.+
T Consensus 240 ~~l--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~~~ 301 (307)
T 3r5x_A 240 KAL--------KCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRV 301 (307)
T ss_dssp HHT--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 555 5557889999999 69999999999999987654321 11 234555555555443
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.86 E-value=5.4e-08 Score=107.15 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=88.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCC-eEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYN-TKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdG-RKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++.|+||.++++.+++...+.........++||+||+ | +- +++-|+... ++ .+... +-..
T Consensus 177 vvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~E--~~v~vl~~~-~~-~~~~~--~ei~ 244 (377)
T 1ehi_A 177 VFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN------GARE--LEVGVIGND-QP-LVSEI--GAHT 244 (377)
T ss_dssp EEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------CSCE--EEEEEEESS-SC-EEEEE--EEEE
T ss_pred EEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC------CCce--EEEEEEcCC-Cc-EEEee--EEEE
Confidence 89999999999999999999998887754333456899999997 5 54 455554322 21 11111 0011
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCC-CCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNG-NRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~-~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
....... .. . +....++..+ ..... .+......+..+|++++..++
T Consensus 245 ~~~~~~~-~~--------~----~d~~~k~~~g~~~~~~--------------------~Pa~l~~~~~~~i~~~a~~~~ 291 (377)
T 1ehi_A 245 VPNQGSG-DG--------W----YDYNNKFVDNSAVHFQ--------------------IPAQLSPEVTKEVKQMALDAY 291 (377)
T ss_dssp CTTSSSS-SC--------C----CCHHHHTTCCTTCEEE--------------------SSCCCCHHHHHHHHHHHHHHH
T ss_pred ecCCCCc-Cc--------e----eCHHhcccCCCCeeEE--------------------eCCCCCHHHHHHHHHHHHHHH
Confidence 1000000 00 0 0111111110 00000 000112234455677777776
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
.+. ++.+..++||++|.++++||||||..|+++..+
T Consensus 292 ~al--------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 292 KVL--------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp HHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHc--------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 665 666899999999999999999999999998654
No 16
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.83 E-value=1.8e-08 Score=110.25 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=89.6
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-.|+||..||+|+|+.++++.+++...+.........+++|+||. + .+|||++|+=.. + . ++.|
T Consensus 154 PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VvGg~-----v---~-a~~R 217 (309)
T 1i7n_A 154 PVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-A------KYDIRVQKIGNN-----Y---K-AYMR 217 (309)
T ss_dssp SEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETTE-----E---E-EEEE
T ss_pred CEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEECCE-----E---E-EEEE
Confidence 589999999999999999998877655532111134677999998 2 599999987221 1 1 3455
Q ss_pred ccc-cCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 840 FCS-QNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FAS-q~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
-+. ..| -|| . ..+.. . .-.+-+.+++++..+.
T Consensus 218 r~~~g~w----------rtN----~------~~~~~-------------------------e--~~~l~~e~~~la~~A~ 250 (309)
T 1i7n_A 218 TSISGNW----------KTN----T------GSAML-------------------------E--QIAMSDRYKLWVDACS 250 (309)
T ss_dssp ESSCTTT----------SCS----C------CCSSE-------------------------E--EECCCHHHHHHHHHHT
T ss_pred EcCCCCC----------eec----C------Cccee-------------------------e--ecCCCHHHHHHHHHHH
Confidence 543 212 123 1 00000 0 0012233555655554
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeec--CCCCCcCChhHHHHHHH
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINS--GPCMAASTSVTARLCAQ 971 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNS--SPSLs~ST~Vd~~Lk~q 971 (1105)
.+. +..+++|+|++.+.+|++.+||||+ +|++......+......
T Consensus 251 ~a~--------gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~ 297 (309)
T 1i7n_A 251 EMF--------GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITD 297 (309)
T ss_dssp TGG--------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHH
T ss_pred HHh--------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHH
Confidence 332 4588999999999999999999999 99998554444433333
No 17
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.81 E-value=3.2e-08 Score=104.39 Aligned_cols=151 Identities=12% Similarity=0.120 Sum_probs=82.6
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC-----CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEE--
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNT-----NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWM-- 832 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~-----k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWl-- 832 (1105)
-+|+||..++.|+||.++++.+++...+..... ....++||+||+ |..+++.+++-+.. +...++.
T Consensus 128 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~~~~~~~~~-~~v~~~~~~ 200 (334)
T 2r85_A 128 PVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYPHYFYSKVR-EELELMSID 200 (334)
T ss_dssp CEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEEEEEEETTT-TEEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEEEEeecCcC-ceeeeeeec
Confidence 399999999999999999999888776533211 126899999998 67776433321100 0011221
Q ss_pred -----Eccceeecccc-CCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhh
Q psy9020 833 -----YKESYLRFCSQ-NYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVI 906 (1105)
Q Consensus 833 -----YregyVRFASq-~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I 906 (1105)
..+++.|.... .+.. +... + .....+. +......+
T Consensus 201 g~~~~~~~~~~~~~~~~~~~~-~~~~-----~----~~~~g~~-----------------------------p~~l~~~~ 241 (334)
T 2r85_A 201 RRYESNVDAIGRIPAKDQLEF-DMDI-----T----YTVIGNI-----------------------------PIVLRESL 241 (334)
T ss_dssp EEEEEEGGGGGGSCHHHHTTS-CCCC-----C----EEEEEEE-----------------------------ECCCCGGG
T ss_pred cEEEeccCccccccccccccc-ccCC-----c----eeeeCCC-----------------------------CcccCHHH
Confidence 12222221110 0000 0000 0 0000000 00111234
Q ss_pred hhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 907 YPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 907 ~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
.++|++++..++.+...... ++.+.+++||++|++++|||||||..|+..
T Consensus 242 ~~~i~~~a~~~~~~l~~~~~---~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 242 LMDVIEAGERVVKAAEELMG---GLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---CCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHHHHHHHHHHHHhhcc---cccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 45567777776666533222 578899999999999999999999999984
No 18
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.75 E-value=4.5e-08 Score=108.14 Aligned_cols=143 Identities=14% Similarity=0.175 Sum_probs=86.2
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCC-eEEE-EEEEEEEeecCCcEEEEEccce
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYN-TKFD-IRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdG-RKFD-IRVYVLVTS~nPLrVWlYregy 837 (1105)
-+|+||..++.|.||.++++.+++...+......+..++||+||+ | +-|. +++.| ... ..++..
T Consensus 187 PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~------G~~E~svi~v~v---~g~-~~~~~~---- 252 (367)
T 2pvp_A 187 PFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ------GVKEYNLAGCKI---KKD-FCFSYI---- 252 (367)
T ss_dssp CEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT------TCEEEEEEEEEE---TTE-EEEEEE----
T ss_pred CEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC------CCceeeEEEEEE---CCE-EEEEEE----
Confidence 399999999999999999999888777754333356899999997 6 7655 55554 211 112211
Q ss_pred eeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 838 LRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 838 VRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
+..... . + +....++..+...... +....+.+.++|++++..+
T Consensus 253 -ei~~~~----~------~------~d~~~ky~~g~~~~~~--------------------Pa~l~~~~~~~i~~~a~~~ 295 (367)
T 2pvp_A 253 -EEPNKQ----E------F------LDFKQKYLDFSRNKAP--------------------KASLSNALEEQLKENFKKL 295 (367)
T ss_dssp -EETTTT----E------E------ECCCCSSCCSCCCSCC--------------------CCCCCHHHHHHHHHHHHHH
T ss_pred -EEecCC----c------e------EcccccccCCCeeEEe--------------------cCCCCHHHHHHHHHHHHHH
Confidence 111100 0 0 0000001000000000 0111223345566666666
Q ss_pred HHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCC
Q psy9020 918 LLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAAST 962 (1105)
Q Consensus 918 LlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST 962 (1105)
+.+. ++.+..++||++| ++.+||||||+.|+++..+
T Consensus 296 ~~aL--------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s 331 (367)
T 2pvp_A 296 YSDL--------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANY 331 (367)
T ss_dssp HTTT--------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGG
T ss_pred HHHc--------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCccc
Confidence 6554 5678899999999 9999999999999986543
No 19
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.73 E-value=4.1e-08 Score=108.94 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=85.4
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-.|+||..||+|+|+.++++.+++...+.........+++|+||. + .+|||++|+=.. + . ++.|
T Consensus 171 PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VVGg~-----v-v---a~~R 234 (344)
T 2p0a_A 171 PVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKIGSN-----Y-K---AYMR 234 (344)
T ss_dssp SEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETTE-----E-E---EEEE
T ss_pred CEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEECCE-----E-E---EEEE
Confidence 589999999999999999998877654431111134677999998 2 699999987221 1 1 2455
Q ss_pred ccc-cCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 840 FCS-QNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FAS-q~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
-+. ..|- || .+ .+. .-.-.+-+.+++++..+.
T Consensus 235 ~~~~g~wr----------tN----~~------~~~---------------------------~e~~~l~~e~~~la~~Aa 267 (344)
T 2p0a_A 235 TSISGNWK----------AN----TG------SAM---------------------------LEQVAMTERYRLWVDSCS 267 (344)
T ss_dssp EESSSCSS----------TT----SS------SEE---------------------------EEEECCCHHHHHHHHHHT
T ss_pred ecCCCCCe----------ec----CC------ceE---------------------------EEeeCCCHHHHHHHHHHH
Confidence 442 2221 23 10 000 000012234556665554
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeec--CCCCCcCC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINS--GPCMAAST 962 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNS--SPSLs~ST 962 (1105)
++. +..+++|+|++.+.+|++.+||||+ +|++....
T Consensus 268 ~a~--------gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~ 305 (344)
T 2p0a_A 268 EMF--------GGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHV 305 (344)
T ss_dssp TGG--------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGH
T ss_pred HHh--------CCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchh
Confidence 332 4578999999999999999999999 99997543
No 20
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.72 E-value=6.2e-08 Score=110.16 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=90.4
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
-.|+||..|++|+|+.++++.+++...+.........++||+||. ..+|||++|+=.. + + ++.|
T Consensus 266 PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-------~g~DIRv~VVGg~-----v-v---a~~R 329 (422)
T 1pk8_A 266 PVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-------AKYDVRVQKIGQN-----Y-K---AYMR 329 (422)
T ss_dssp SEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-------EEEEEEEEEETTE-----E-E---EEEE
T ss_pred CEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-------CCceEEEEEECCE-----E-E---EEEE
Confidence 589999999999999999998877665532111134677999998 2699999987221 1 1 3455
Q ss_pred cccc-CCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 840 FCSQ-NYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FASq-~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
-+.. .| -|| .+ .+. .-.-.+-+.+++++..+.
T Consensus 330 r~~~g~W----------rtN----vg------~g~---------------------------~e~i~lt~e~~elA~kAa 362 (422)
T 1pk8_A 330 TSVSGNW----------KTN----TG------SAM---------------------------LEQIAMSDRYKLWVDTCS 362 (422)
T ss_dssp EESSSCS----------STT----SS------CEE---------------------------EEEECCCHHHHHHHHHHT
T ss_pred EcCCCCc----------eec----cC------cee---------------------------eeeeCCCHHHHHHHHHHH
Confidence 5432 12 123 10 000 000012234556665554
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeec--CCCCCcCChhHHHHHHH
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINS--GPCMAASTSVTARLCAQ 971 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNS--SPSLs~ST~Vd~~Lk~q 971 (1105)
++. +..+++|+|++.+.+|++++||||+ +|++......+......
T Consensus 363 ka~--------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~ 409 (422)
T 1pk8_A 363 EIF--------GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVE 409 (422)
T ss_dssp TGG--------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHH
T ss_pred HHh--------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHH
Confidence 443 4588999999999999999999999 99998554444443333
No 21
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.65 E-value=2.3e-08 Score=102.37 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=74.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc--CC--CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT--NT--NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKES 836 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~--~~--k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYreg 836 (1105)
||+||..++.|+||.++++.+++...+... .. ....++||+||+. ..+++|++++- + ..+. .
T Consensus 126 ~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~------~~~e~~v~v~~-~-~~~~------~ 191 (280)
T 1uc8_A 126 VVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEK------PGRDIRVFVVG-E-RAIA------A 191 (280)
T ss_dssp EEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCCC------SSCCEEEEEET-T-EEEE------E
T ss_pred EEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccCC------CCceEEEEEEC-C-EEEE------E
Confidence 999999999999999998877776655321 11 1468999999983 45789988751 1 1111 1
Q ss_pred eeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHH
Q psy9020 837 YLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVG 916 (1105)
Q Consensus 837 yVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~ 916 (1105)
..|.. ..|. +| .. .++ .. .+ ..+.+++++++..
T Consensus 192 ~~~~~-~~~~----------~~----~~------~g~--------~~--------------~p----~~l~~~~~~~~~~ 224 (280)
T 1uc8_A 192 IYRRS-AHWI----------TN----TA------RGG--------QA--------------EN----CPLTEEVARLSVK 224 (280)
T ss_dssp EEC-------------------------------------------C--------------EE----CCCCHHHHHHHHH
T ss_pred EEEec-CCcc----------cc----cc------CCc--------cc--------------cC----CCCCHHHHHHHHH
Confidence 11211 1110 11 00 000 00 00 0122346666666
Q ss_pred HHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 917 SLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 917 tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
++.+. ++ +.+|+||++|+++ +|+||||..|++..
T Consensus 225 ~~~~l--------g~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 225 AAEAV--------GG-GVVAVDLFESERG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp HHHHT--------TC-SEEEEEEEEETTE-EEEEEEETTCCCTT
T ss_pred HHHHh--------CC-CeEEEEEEEeCCC-eEEEEEeCCCCccc
Confidence 66654 34 7899999999996 99999999999864
No 22
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.62 E-value=2.8e-07 Score=101.92 Aligned_cols=158 Identities=12% Similarity=0.180 Sum_probs=85.7
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc-----------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT-----------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLT 829 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~-----------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLr 829 (1105)
+|+||..|+.|+|+.++++.+++.+.+... ......+|||+||+ |+-|.+.+++. ... ..
T Consensus 148 ~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~~~~--~g~-~~ 218 (425)
T 3vot_A 148 LVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIETLSI--QGN-VH 218 (425)
T ss_dssp EEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEEEEE--TTE-EE
T ss_pred EEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEEEEe--CCc-EE
Confidence 899999999999999999998887665321 11346799999997 77777665432 211 11
Q ss_pred EEEEccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhh
Q psy9020 830 VWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPG 909 (1105)
Q Consensus 830 VWlYregyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pq 909 (1105)
++... -|..+.. .......|.+. ....+.+...
T Consensus 219 ~~~~~---~~~~~~~---~~~~~~~~~~P-----------------------------------------a~l~~~~~~~ 251 (425)
T 3vot_A 219 VLSIG---YKGNSKG---PFFEEGVYIAP-----------------------------------------AQLKEETRLA 251 (425)
T ss_dssp EEEEE---EEECCCC---SBCCCCEEEES-----------------------------------------CCCCHHHHHH
T ss_pred EEeEE---EEeccCC---CccccceEeec-----------------------------------------ccCCHHHHHH
Confidence 11000 0111110 00011111111 0011122334
Q ss_pred HHHHHHHHHHHhhhccCCCCCc-eeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHH--HHHHHHHHhhhc
Q psy9020 910 MKDGIVGSLLASQDSFDHRKNC-FELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCA--QVLEDVIKVVVD 982 (1105)
Q Consensus 910 IKeiIi~tLlAaqd~l~~rknc-FELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~--qVLeDtLkVVVD 982 (1105)
|.+.+..++.+. ++ .+.+++||++|.+|+|||||||..|+....+....++.. .+++-+++..+.
T Consensus 252 i~~~~~~~~~al--------g~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg 319 (425)
T 3vot_A 252 IVKEVTGAVSAL--------GIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALK 319 (425)
T ss_dssp HHHHHHHHHHHT--------TCCSEEEEEEEEECTTCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHc--------CCCcceEEEEEEEEeCCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCC
Confidence 555665655554 33 488999999999999999999999976543222222222 455555666554
No 23
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.60 E-value=3.4e-07 Score=97.01 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=38.8
Q ss_pred EEEeCCCCCCC---CcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRG---RGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRG---RGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
+|+||..|+.| +|+.++.+.+++.. ....++||+||+.+ | +|+|++|+
T Consensus 138 ~vvKP~~g~g~~~s~gv~~v~~~~~l~~-------~~~~~lvqe~i~~~----g--~~~~v~v~ 188 (324)
T 1z2n_X 138 FIVKPENAQGTFNAHQMKIVLEQEGIDD-------IHFPCLCQHYINHN----N--KIVKVFCI 188 (324)
T ss_dssp EEEEESBCSSSSGGGEEEEECSGGGGTT-------CCSSEEEEECCCCT----T--CEEEEEEE
T ss_pred EEEeeCCCCCCccceeeEEEeCHHHHhh-------cCCCEEEEEccCCC----C--cEEEEEEE
Confidence 99999999999 99999998776532 14689999999842 3 78999875
No 24
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.54 E-value=1.5e-06 Score=95.84 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=81.4
Q ss_pred EEEEeCCC--CCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccce
Q psy9020 760 LWIVKPGA--KSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESY 837 (1105)
Q Consensus 760 IWILKPaa--GSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregy 837 (1105)
-+|+||.. ||.|.|+.++.+.+++..+ ...++||+||+.+ | .|||+||+-. .+.. +
T Consensus 164 P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------~~~~lvQefI~~~----G--~dirv~VvG~-----~v~~----~ 221 (346)
T 2q7d_A 164 PFICKTRVAHGTNSHEMAIVFNQEGLNAI-------QPPCVVQNFINHN----A--VLYKVFVVGE-----SYTV----V 221 (346)
T ss_dssp SEEEECSBCSSTTCCEEEEECSGGGTTC---------CCEEEEECCCCT----T--EEEEEEEETT-----EEEE----E
T ss_pred CEEEEecCCCcceeeeeEEecCHHHHHhc-------CCCEEEEEeeCCC----C--eEEEEEEECC-----EEEE----E
Confidence 39999985 4558899999988776432 3579999999852 4 6999998621 1111 2
Q ss_pred eeccccCCccCCCCcccccccccccchhh--hcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHH
Q psy9020 838 LRFCSQNYSLVNMHESVHLSNNITNNAIQ--CKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIV 915 (1105)
Q Consensus 838 VRFASq~Ysl~NLD~siHLTN~ltN~SIQ--K~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi 915 (1105)
.|.+...+.....+.. . +... +.+..+......|...+ .+. ... ...+.+++++.
T Consensus 222 ~r~sl~~~~~~~~~~~----~----~~f~s~~~~~~g~~~~~~~~~~~------------~~~-~~~--~~~~el~~lA~ 278 (346)
T 2q7d_A 222 QRPSLKNFSAGTSDRE----S----IFFNSHNVSKPESSSVLTELDKI------------EGV-FER--PSDEVIRELSR 278 (346)
T ss_dssp EEECCCCCC----CCC----C----EEEEGGGTSSTTCCCGGGCCSCC------------CSC-CCC--CCHHHHHHHHH
T ss_pred EEecCCCcCcCccccc----c----ccccceeeccCCccccccccccc------------ccc-ccC--CChHHHHHHHH
Confidence 3433332211100000 0 0011 10111110000000000 000 000 01234666766
Q ss_pred HHHHHhhhccCCCCCceeEEEEEEEecc-CCceEEEEeecCCCCCcCChh
Q psy9020 916 GSLLASQDSFDHRKNCFELYGADFMLAQ-NFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 916 ~tLlAaqd~l~~rkncFELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~V 964 (1105)
.+.++. ++ .++|+||++|. ++++|+||||+.|+|.....+
T Consensus 279 ~a~~al--------Gl-~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~~ 319 (346)
T 2q7d_A 279 ALRQAL--------GV-SLFGIDIIINNQTGQHAVIDINAFPGYEGVSEF 319 (346)
T ss_dssp HHHHHH--------CC-CEEEEEEEECTTTCCEEEEEEEESCCCTTCTTH
T ss_pred HHHHHh--------CC-ceEeeEEEeecCCCCEEEEEEeCCccccccchH
Confidence 666655 33 37899999997 799999999999999976543
No 25
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.50 E-value=5.5e-07 Score=97.99 Aligned_cols=153 Identities=12% Similarity=0.169 Sum_probs=86.2
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++ .|+|+.++++.+++...+. ..++||+||+. | .++++.++....+-..++-..+-+
T Consensus 135 ~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~~~~~~-- 199 (380)
T 3ax6_A 135 VVQKARKGGYDGRGVFIIKNEKDLENAIK------GETYLEEFVEI-----E--KELAVMVARNEKGEIACYPVVEMY-- 199 (380)
T ss_dssp EEEEESCCC-----EEEECSGGGGGGCCC------SSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEEEEEEC--
T ss_pred EEEEecCCCCCCCCeEEECCHHHHHHHhc------CCEEEEeccCC-----C--eeEEEEEEECCCCCEEEECCeeee--
Confidence 999999999 9999999999888754432 57999999983 3 467777665422222221110000
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
+...... .+ .+.+ +......+..++++++..++.
T Consensus 200 ~~~~~~~---~~--~~~~-----------------------------------------p~~l~~~~~~~~~~~a~~~~~ 233 (380)
T 3ax6_A 200 FDEDANI---CD--TVIA-----------------------------------------PARIEEKYSKIAREIATSVVE 233 (380)
T ss_dssp -----------C--EEEE-----------------------------------------SCSSCHHHHHHHHHHHHHHHH
T ss_pred ecccCCe---eE--EEEC-----------------------------------------CCCCCHHHHHHHHHHHHHHHH
Confidence 0000000 00 0000 000112233456666666666
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+. ++.+.+++||+++++|++|+||||..|+........ ..-..+++..++.++..
T Consensus 234 ~l--------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 288 (380)
T 3ax6_A 234 AL--------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSGHYTIE-ACVTSQFEQHIRAIMNL 288 (380)
T ss_dssp HH--------TCCEEEEEEEEEETTSCEEEEEEESSCCGGGTHHHH-HBSSCHHHHHHHHHTTC
T ss_pred HC--------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCceeehh-hccccHHHHHHHHHhCC
Confidence 55 556899999999999999999999999886532111 11124555566665543
No 26
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.48 E-value=3.6e-07 Score=98.76 Aligned_cols=152 Identities=9% Similarity=0.124 Sum_probs=69.0
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++ .|+|+.++++.+++.+.+.... ....++||+||+. |+ ++++.++....+...++-..+.+.+
T Consensus 129 ~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~-~~~~~lvEe~i~~-----g~--e~sv~~~~d~~G~~~~~~~~~~~~~ 200 (365)
T 2z04_A 129 VVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD-KEESFIIEEFVKF-----EA--EISCIGVRDREGKTYFYPQPFNKHE 200 (365)
T ss_dssp EEEECC-------------------------------CEEEECCCC-----SE--EEEEEEEECTTCCEEECCEEEEEEE
T ss_pred EEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc-cCCCEEEEccCCC-----CE--EEEEEEEECCCCCEEEECCEEEEEe
Confidence 999999999 9999999999888877664321 2467999999983 54 5666666542222222111111100
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
.. ..+ .+.+ +. .+.+.+++++..++.
T Consensus 201 ---~~----~~~--~~~~-----------------------------------------p~----~~~~~~~~~~~~~~~ 226 (365)
T 2z04_A 201 ---EG----ILI--YNYV-----------------------------------------PY----AKLKEAEEITKRLME 226 (365)
T ss_dssp ---TT----EEE--EEEE-----------------------------------------EE----ECCHHHHHHHHHHHH
T ss_pred ---CC----EeE--EEEC-----------------------------------------CH----hHHHHHHHHHHHHHH
Confidence 00 000 0000 00 012345566666655
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+. +..+.+++||++|++|++|+||||..|+........... ...++..++.++..
T Consensus 227 ~l--------g~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 281 (365)
T 2z04_A 227 LL--------DIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLDGAY-TSQFENLLRAITEM 281 (365)
T ss_dssp HT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHHHBS-SCHHHHHHHHHTTC
T ss_pred Hc--------CCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEeeccc-cCHHHHHHHHHhCC
Confidence 54 456899999999999999999999999875443322111 14455566665543
No 27
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.48 E-value=8e-07 Score=99.79 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=35.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIE 804 (1105)
||+||..++.|+|+.++++.+++...+.... .....+|||+||+
T Consensus 145 vVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~ 194 (431)
T 3mjf_A 145 IVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD 194 (431)
T ss_dssp EEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC
T ss_pred EEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC
Confidence 9999999999999999999998877664321 1135899999998
No 28
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.43 E-value=1e-06 Score=99.35 Aligned_cols=52 Identities=13% Similarity=0.310 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQ 818 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRV 818 (1105)
+|+||..++.|+|+.++++.+++.+.+..... ....+|||+||+ |+.+.+-+
T Consensus 161 vVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~E~sv~~ 218 (442)
T 3lp8_A 161 LVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE------GKEISFFT 218 (442)
T ss_dssp EEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SEEEEEEE
T ss_pred EEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec------CcEEEEEE
Confidence 99999999999999999999988776643211 125799999998 66555443
No 29
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.43 E-value=2.9e-06 Score=94.36 Aligned_cols=154 Identities=15% Similarity=0.170 Sum_probs=90.8
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++ .|+|+.++++.+++.+.+... ....+|||+||+. | .++.+.++....+ +..|.-.
T Consensus 163 ~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--~~~~~lvEe~i~~-----~--~E~sv~v~~~~~g---~~~~p~~--- 227 (403)
T 3k5i_A 163 LMLKSKTMAYDGRGNFRVNSQDDIPEALEAL--KDRPLYAEKWAYF-----K--MELAVIVVKTKDE---VLSYPTV--- 227 (403)
T ss_dssp EEEEESSSCCTTTTEEEECSTTSHHHHHHHT--TTSCEEEEECCCE-----E--EEEEEEEEECSSC---EEECCCE---
T ss_pred EEEEeCCCCcCCCCEEEECCHHHHHHHHHhc--CCCcEEEecCCCC-----C--eEEEEEEEEcCCC---EEEeCCe---
Confidence 999999886 999999999999888777543 2568999999972 2 3555555543221 2111100
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchh-hHhhhhhhHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADV-WQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~-Wed~I~pqIKeiIi~tL 918 (1105)
. + .|-.+ . ...... +.. ....+..++++++..++
T Consensus 228 -~-------~----~~~~g----~-~~~~~~----------------------------Pa~~l~~~~~~~~~~~a~~i~ 262 (403)
T 3k5i_A 228 -E-------T----VQEDS----I-CKLVYA----------------------------PARNVSDAINQKAQELARKAV 262 (403)
T ss_dssp -E-------E----EEETT----E-EEEEEE----------------------------SCSSCCHHHHHHHHHHHHHHH
T ss_pred -e-------e----EEeCC----E-EEEEEe----------------------------CCCCCCHHHHHHHHHHHHHHH
Confidence 0 0 00000 0 000000 000 11223344555555555
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
.+. ++.+.+++||+++.+|++|++|||..|+.+..-.. ...-..+++..++.++..
T Consensus 263 ~~L--------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~sg~~~~-~~~~~s~~~~~~ra~~G~ 318 (403)
T 3k5i_A 263 AAF--------DGKGVFGVEMFLLEDDSIMLCEIASRIHNSGHYTI-EGCALSQFDAHLRAILDL 318 (403)
T ss_dssp HTS--------CCSEEEEEEEEEETTSCEEEEEEESSCCGGGTTHH-HHBSSCHHHHHHHHHTTC
T ss_pred HHc--------CCeeEEEEEEEEeCCCcEEEEEeecCCCCCCceee-eecCCCHHHHHHHHHcCC
Confidence 444 56789999999999999999999999997532211 111235566677776554
No 30
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.43 E-value=1.4e-06 Score=96.21 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=40.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
+|+||..++.|+|+.++++.+++.+.+..... ....++||+||+ |+.|.+.++
T Consensus 140 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~E~sv~~~ 198 (424)
T 2yw2_A 140 IVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE------GEEASYIVM 198 (424)
T ss_dssp EEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SEEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CcEEEEEEE
Confidence 99999999999999999999988776643211 125799999997 565554443
No 31
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.39 E-value=4.2e-06 Score=93.89 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=91.8
Q ss_pred EEEeCC-CCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPG-AKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPa-aGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||. .|+.|+|+.++++.+++...+... ....+|||+||+- ...+.+.++....+.... |-
T Consensus 174 ~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--~~~~~lvEe~i~~-------~~Eisv~v~~~~~G~~~~--~~----- 237 (419)
T 4e4t_A 174 GILKTARLGYDGKGQVRVSTAREARDAHAAL--GGVPCVLEKRLPL-------KYEVSALIARGADGRSAA--FP----- 237 (419)
T ss_dssp EEEEESSSCCTTTTEEEECSHHHHHHHHHHT--TTCCEEEEECCCE-------EEEEEEEEEECTTSCEEE--CC-----
T ss_pred EEEEecCCCCCCCceEEECCHHHHHHHHHhc--CCCcEEEeecCCC-------CeEEEEEEEEcCCCCEEE--Ee-----
Confidence 999999 899999999999999988877543 3568999999973 234555444322111111 10
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
+.+ + .|-.+ ....++ . |. ......+..++++++..++.
T Consensus 238 -~~e-----~----~~~~g-~~~~~~----~--------Pa-------------------~~l~~~~~~~~~~~a~~i~~ 275 (419)
T 4e4t_A 238 -LAQ-----N----VHHNG-ILALTI----V--------PA-------------------PAADTARVEEAQQAAVRIAD 275 (419)
T ss_dssp -CEE-----E----EEETT-EEEEEE----E--------SC-------------------TTCCHHHHHHHHHHHHHHHH
T ss_pred -CeE-----E----EeeCC-eEEEEE----c--------CC-------------------CCCCHHHHHHHHHHHHHHHH
Confidence 000 0 00000 000000 0 00 00112233445666666665
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcCC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDRR 984 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr~ 984 (1105)
+. +..+.+++||+++.+|++|++|||..|+.+.. ++...+ ..+++..++.++...
T Consensus 276 ~l--------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg~--~t~~~~~~s~~~~~~ra~~G~p 331 (419)
T 4e4t_A 276 TL--------GYVGVLCVEFFVLEDGSFVANEMAPRPHNSGH--YTVDACATSQFEQQVRAMTRMP 331 (419)
T ss_dssp HH--------TCCEEEEEEEEEETTCCEEEEEEESSCCGGGT--THHHHBSSCHHHHHHHHHTTCC
T ss_pred HC--------CCeeEEEEEEEEeCCCCEEEEEEeCCCCCCCC--eEeeccCCCHHHHHHHHHcCCC
Confidence 54 56789999999999999999999999986432 222222 345666677766543
No 32
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.36 E-value=4e-06 Score=92.05 Aligned_cols=151 Identities=8% Similarity=0.068 Sum_probs=89.8
Q ss_pred EEEeCCCCCC-CCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEE-----EEc
Q psy9020 761 WIVKPGAKSR-GRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVW-----MYK 834 (1105)
Q Consensus 761 WILKPaaGSR-GRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVW-----lYr 834 (1105)
+|+||..+.. |+|+.++++.+++.+.+.... ...++||+||+- ++ ++.+.++....+-..+| ...
T Consensus 150 ~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--~~~~lvEe~i~g-----~~--E~~v~~~~~~~G~~~~~~~~e~~~~ 220 (389)
T 3q2o_A 150 SVLKTTTGGYDGKGQVVLRSEADVDEARKLAN--AAECILEKWVPF-----EK--EVSVIVIRSVSGETKVFPVAENIHV 220 (389)
T ss_dssp EEEEESSCCSSSCCEEEESSGGGHHHHHHHHH--HSCEEEEECCCC-----SE--EEEEEEEECTTCCEEECCCEEEEEE
T ss_pred EEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--CCCEEEEecccC-----ce--EEEEEEEEcCCCCEEEecCeeeEEc
Confidence 8999999864 899999999998877664321 357999999982 23 45554443311111111 001
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.+... .+++. ......+..+|++++
T Consensus 221 ~g~~~--------------~~~~p-----------------------------------------~~l~~~~~~~~~~~a 245 (389)
T 3q2o_A 221 NNILH--------------ESIVP-----------------------------------------ARITEELSQKAIAYA 245 (389)
T ss_dssp TTEEE--------------EEEES-----------------------------------------CSSCHHHHHHHHHHH
T ss_pred CCceE--------------EEECC-----------------------------------------CCCCHHHHHHHHHHH
Confidence 00000 00000 001122334566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcCC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRR 984 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr~ 984 (1105)
..++.+. +..+.+++||+++.+|++|+||||..|+.+..... ...--.+.+..++.++...
T Consensus 246 ~~~~~~l--------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~~~~-~~~g~~~~~~~~r~~lg~~ 306 (389)
T 3q2o_A 246 KVLADEL--------ELVGTLAVEMFATADGEIYINELAPRPHNSGHYTQ-DACETSQFGQHIRAICNLP 306 (389)
T ss_dssp HHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHH-HHBSSCHHHHHHHHHHTCC
T ss_pred HHHHHHc--------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCchhHHH-HHcCCCHHHHHHHHHcCCC
Confidence 6666554 56789999999999999999999999987643221 1111245666666666543
No 33
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.34 E-value=8e-06 Score=88.55 Aligned_cols=155 Identities=8% Similarity=0.104 Sum_probs=86.3
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEccceee
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLR 839 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVR 839 (1105)
+|+||..++ .|+|+.++++.+++.+.+.... ...++||+||+. |+. +.+.++....+...++-..+.+-|
T Consensus 134 ~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--~~~~lvEe~i~~-----g~e--~sv~~~~d~~G~~~~~~~~~~~~~ 204 (369)
T 3aw8_A 134 ALLKTRRGGYDGKGQALVRTEEEALEALKALG--GRGLILEGFVPF-----DRE--VSLLAVRGRTGEVAFYPLVENRHW 204 (369)
T ss_dssp EEEEECCC------EEEECSHHHHHHHHTTTC--SSSEEEEECCCC-----SEE--EEEEEEECTTSCEEECCCEEEEEE
T ss_pred EEEEEcCCCCCcceEEEECCHHHHHHHHHhcC--CCcEEEEEcCCC-----CEE--EEEEEEECCCCCEEEECCeeeeee
Confidence 999999999 9999999999999988876432 568999999984 554 444444432212111100000000
Q ss_pred ccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHHH
Q psy9020 840 FCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLL 919 (1105)
Q Consensus 840 FASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tLl 919 (1105)
.. ..+ .+.+. . ......+..+|++++..++.
T Consensus 205 ---~~----~~~--~~~~p-------------~---------------------------~~l~~~~~~~~~~~a~~~~~ 235 (369)
T 3aw8_A 205 ---GG----ILR--LSLAP-------------A---------------------------PGASEALQKKAEAYALRAME 235 (369)
T ss_dssp ---TT----EEE--EEEES-------------C---------------------------TTCCHHHHHHHHHHHHHHHH
T ss_pred ---CC----EEE--EEECC-------------C---------------------------CCCCHHHHHHHHHHHHHHHH
Confidence 00 000 00000 0 00112233445666666665
Q ss_pred HhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhcC
Q psy9020 920 ASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDR 983 (1105)
Q Consensus 920 Aaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVDr 983 (1105)
+. +..+.+++||+++. +++|+||||..|+......... .-..+++..++.++..
T Consensus 236 ~l--------g~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~~~~~-~g~~~~~~~~~~~~g~ 289 (369)
T 3aw8_A 236 AL--------DYVGVLALEFFQVG-EELLFNEMAPRVHNSGHWTIEG-AETSQFENHLRAVLGL 289 (369)
T ss_dssp HH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHH-BSSCHHHHHHHHHHTC
T ss_pred HC--------CCeeEEEEEEEEEC-CcEEEEEEeCCcCCccceeeee-ecCCHHHHHHHHHcCC
Confidence 55 55689999999998 8999999999998865443221 1124455556655543
No 34
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.34 E-value=3.7e-06 Score=93.88 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=92.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+|+.++++.+++...+.... .....++||+||+-| + ++.+-++....... +++.
T Consensus 159 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~d~~g~~-~~~~- 229 (446)
T 3ouz_A 159 VILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-----R--HIEVQVIGDSFGNV-IHVG- 229 (446)
T ss_dssp EEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEECTTSCE-EEEE-
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-----c--EEEEEEEEcCCCCE-EEEe-
Confidence 9999999999999999999988877663211 014579999999853 3 56666554432222 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|-|+.. ..-++..... | . ......+..+|.+++
T Consensus 230 ---~~~~~~~------------------~~~~~~~~~~---p---~-------------------~~l~~~~~~~l~~~a 263 (446)
T 3ouz_A 230 ---ERDCSMQ------------------RRHQKLIEES---P---A-------------------ILLDEKTRTRLHETA 263 (446)
T ss_dssp ---EEEEEEE------------------ETTEEEEEEE---S---C-------------------TTSCHHHHHHHHHHH
T ss_pred ---eceeeee------------------ecCceEEEEC---C---C-------------------CCCCHHHHHHHHHHH
Confidence 1111100 0000000000 0 0 001122334566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-+.+++||++|.++++|+||||..|+-. .++..... -.+.+-.+++++..
T Consensus 264 ~~~~~~l--------g~~G~~~ve~~~~~~g~~~~iEiNpR~~g~--~~~~~~~~G~dl~~~~~~~~~G~ 323 (446)
T 3ouz_A 264 IKAAKAI--------GYEGAGTFEFLVDKNLDFYFIEMNTRLQVE--HCVSEMVSGIDIIEQMIKVAEGY 323 (446)
T ss_dssp HHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCTT--HHHHHHHHCCCHHHHHHHHHTTC
T ss_pred HHHHHHc--------CCCCceEEEEEEeCCCCEEEEEeECCCCCc--ceeeeeeeCCCHHHHHHHHHCCC
Confidence 6665554 444788999999999999999999998764 34444322 35566667776554
No 35
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.32 E-value=3.6e-06 Score=92.02 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=38.3
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc--CCCCCceEEeecccCCcccCCeEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT--NTNDPRFVVQKYIERPLLIYNTKFDIRQWF 820 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~--~~k~~~yVVQKYIEnPLLIdGRKFDIRVYV 820 (1105)
||+||..|+.|+|+.++++.+++.+.+... ......++||+||+ |..|++++++
T Consensus 147 ~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 147 VIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp EEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 999999999999999999999887766321 11246799999998 6788887764
No 36
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.32 E-value=1.8e-06 Score=96.23 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=90.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..++.|+|+.++++.+++...+... ......++||+||+-+ + ++++-++....... +.+.
T Consensus 154 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~~~~G~~-~~~~- 224 (451)
T 1ulz_A 154 VLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-----K--HIEYQVLGDKHGNV-IHLG- 224 (451)
T ss_dssp EEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-----E--EEEEEEEECTTSCE-EEEE-
T ss_pred EEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-----e--EEEEEEEEcCCCCE-EEEe-
Confidence 999999999999999999988887665321 1124589999999842 3 56666665432222 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|.|+. .. . | ++..... |. ......+..+|.+.+
T Consensus 225 ---~~~~~~----~~--~--~----------~~~~~~~------P~-------------------~~l~~~~~~~i~~~a 258 (451)
T 1ulz_A 225 ---ERDCSI----QR--R--N----------QKLVEIA------PS-------------------LILTPEKREYYGNIV 258 (451)
T ss_dssp ---EEEEEE----EE--T--T----------EEEEEEE------SC-------------------SSCCHHHHHHHHHHH
T ss_pred ---eeeccc----cc--c--c----------ccceeEC------Cc-------------------ccCCHHHHHHHHHHH
Confidence 122110 00 0 0 0000000 00 001122334456666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +..+.+++||++|.+|++|+||||..|+-. .++..... ..+.+-++++++..
T Consensus 259 ~~~~~~l--------g~~G~~~ve~~~~~~g~~~viEiN~R~~~~--~~~~~~~~g~dl~~~~~~~~~G~ 318 (451)
T 1ulz_A 259 TKAAKEI--------GYYNAGTMEFIADQEGNLYFIEMNTRIQVE--HPVSEMVTGIDIVKWQIKIAAGE 318 (451)
T ss_dssp HHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHHTTC
T ss_pred HHHHHHc--------CCCcceEEEEEEeCCCCEEEEEeeCCCCcc--chHHHHHhCCCHHHHHHHHHcCC
Confidence 6666553 445788999999999999999999988644 23332221 24555566665543
No 37
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.32 E-value=2e-06 Score=94.97 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=40.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLV 822 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLV 822 (1105)
+|+||..++.|+|+.++++.+++...+..... ....+|||+||+ |+ ++++.+++
T Consensus 140 ~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 140 IVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp EEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred EEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 99999999999999999999888776643211 135799999997 55 45555544
No 38
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.30 E-value=6.1e-06 Score=91.98 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=91.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..++.|+|+.++++.+++...+.... .....++||+||+-+ -++++-++....+....+ .
T Consensus 154 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~~~G~~~~~-~- 224 (451)
T 2vpq_A 154 VIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGDSYGNVIHL-G- 224 (451)
T ss_dssp EEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEECTTSCEEEE-E-
T ss_pred EEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEcCCCCEEEE-e-
Confidence 9999999999999999999988876653210 013689999999842 256666655432222111 1
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|.|+.. .+ | ++..... |. ......+..+|.+++
T Consensus 225 ---~~~~~~~---~~-----~----------~~~~~~~------P~-------------------~~l~~~~~~~i~~~a 258 (451)
T 2vpq_A 225 ---ERDCTIQ---RR-----M----------QKLVEEA------PS-------------------PILDDETRREMGNAA 258 (451)
T ss_dssp ---EEEEEEE---ET-----T----------EEEEEEE------SC-------------------TTCCHHHHHHHHHHH
T ss_pred ---ccccchh---cc-----c----------cceEEEc------CC-------------------CCCCHHHHHHHHHHH
Confidence 1111100 00 0 0000000 00 001122344566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-+.+++||++| .+|++|+||||..|+-. .++....+ ..+.+-++++++..
T Consensus 259 ~~~~~~l--------g~~G~~~ve~~~~~~~g~~~viEiN~R~~~~--~~~~~~~~g~dl~~~~~~~~~G~ 319 (451)
T 2vpq_A 259 VRAAKAV--------NYENAGTIEFIYDLNDNKFYFMEMNTRIQVE--HPVTEMVTGIDLVKLQLQVAMGD 319 (451)
T ss_dssp HHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHHTTC
T ss_pred HHHHHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCCc--eehhhHHhCCCHHHHHHHHHCCC
Confidence 6666553 4457889999999 89999999999998654 23332221 24555566665543
No 39
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.27 E-value=4.5e-06 Score=86.74 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=42.6
Q ss_pred EEEeCCCCCCCCcEEEEc-ChHHHHHHHhhcCC-CCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMY-KLEDIIQKITATNT-NDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~-sLeEIlk~l~~~~~-k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
+|+||..|+.|+||.+++ +.+++...+..... ....++||+||+.+ ..+|+|+.++
T Consensus 157 ~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 157 IILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----KDGDKRVLVV 214 (316)
T ss_dssp EEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----GGCEEEEEEE
T ss_pred EEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----CCCCEEEEEE
Confidence 999999999999999998 76666555532211 23689999999841 3689999875
No 40
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.23 E-value=4.2e-06 Score=90.91 Aligned_cols=153 Identities=13% Similarity=0.172 Sum_probs=84.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC----CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcc-
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT----NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKE- 835 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~----k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYre- 835 (1105)
+|+||..++.|+|+.++++.+++...+..... ....++||+||+. |+ ++++.++... + .+.++.-
T Consensus 151 ~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~~~-~--g~~~~~~~ 220 (391)
T 1kjq_A 151 CIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----DF--EITLLTVSAV-D--GVHFCAPV 220 (391)
T ss_dssp EEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----SE--EEEEEEEEET-T--EEEECCCE
T ss_pred EEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----Ce--EEEEEEEEeC-C--CeEEccCc
Confidence 99999999999999999998888766532110 1457999999983 44 4555554332 1 1221110
Q ss_pred ceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHH
Q psy9020 836 SYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIV 915 (1105)
Q Consensus 836 gyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi 915 (1105)
...+ ..+ + ..++ +.. ......+..+|.+++.
T Consensus 221 ~~~~---~~~-----~---~~~~----------~~p----------------------------~~l~~~~~~~~~~~a~ 251 (391)
T 1kjq_A 221 GHRQ---EDG-----D---YRES----------WQP----------------------------QQMSPLALERAQEIAR 251 (391)
T ss_dssp EEEE---ETT-----E---EEEE----------EEC----------------------------CCCCHHHHHHHHHHHH
T ss_pred ceEE---ECC-----E---EEEE----------EeC----------------------------CCCCHHHHHHHHHHHH
Confidence 0000 000 0 0000 000 0011223345666666
Q ss_pred HHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHHhhhc
Q psy9020 916 GSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVD 982 (1105)
Q Consensus 916 ~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLkVVVD 982 (1105)
.++.+. +..+.+++||+++++ .+|+||||..|+-+....+.. .--.+++-.+++++.
T Consensus 252 ~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~~~~~~~~-~g~~~~~~~~~~~~G 308 (391)
T 1kjq_A 252 KVVLAL--------GGYGLFGVELFVCGD-EVIFSEVSPRPHDTGMVTLIS-QDLSEFALHVRAFLG 308 (391)
T ss_dssp HHHHHH--------CSSEEEEEEEEEETT-EEEEEEEESSCCGGGGGHHHH-BSSCHHHHHHHHHTT
T ss_pred HHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEECCCCCCcceeeee-cCcCHHHHHHHHHcC
Confidence 666655 457899999999988 999999999998543222211 012344545555544
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.22 E-value=1.1e-05 Score=89.13 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=42.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWFLV 822 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLV 822 (1105)
+|+||..++.|+|+.++++.+++...+.... .....++||+||+ |+ ++++.++.
T Consensus 139 ~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 139 VVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp EEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred EEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 9999999999999999999998887764322 1126899999997 44 56666654
No 42
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.20 E-value=1.1e-05 Score=88.69 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=40.4
Q ss_pred EEEeCCCCC-CCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKS-RGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGS-RGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
+|+||..++ .|+|+.++++.+++.+.+.... ...+|||+||+- ..++.+.++
T Consensus 148 ~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~--~~~~ivEe~i~g-------~~E~sv~~~ 200 (377)
T 3orq_A 148 FIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE--TSECVAEKYLNI-------KKEVSLTVT 200 (377)
T ss_dssp EEEEESSSCCTTTTEEEECSTTSHHHHHHHHT--TSCEEEEECCCE-------EEEEEEEEE
T ss_pred EEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--CCcEEEEccCCC-------CEEEEEEEE
Confidence 899999986 8999999999998877765432 368999999982 235666555
No 43
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.19 E-value=1.2e-05 Score=93.68 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=89.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
+|+||..|+.|+||.++++.+++...+.... .....++||+||+.| + ++.+-++....... +.++ .
T Consensus 231 vVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~-----r--ei~V~vl~d~~G~v-v~l~----~ 298 (540)
T 3glk_A 231 LMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILADQYGNA-VSLF----G 298 (540)
T ss_dssp EEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE-----E--EEEEEEEECTTSCE-EEEE----E
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEcCCCCE-EEEe----c
Confidence 8999999999999999999888876663211 124679999999841 3 45555554432221 2211 1
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
|-|+. |..+.... ... ........+..+|.+++..++
T Consensus 299 rd~s~----------------------qr~~~k~i--e~~-------------------Pa~~l~~~~~~~l~~~a~~~~ 335 (540)
T 3glk_A 299 RDCSI----------------------QRRHQKIV--EEA-------------------PATIAPLAIFEFMEQCAIRLA 335 (540)
T ss_dssp EEEEE----------------------C---CCSE--EEE-------------------SCTTSCHHHHHHHHHHHHHHH
T ss_pred eeeee----------------------eecccceE--Eec-------------------CCCCCCHHHHHHHHHHHHHHH
Confidence 22211 11000000 000 000012234455667766666
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
.+. +..+..++||++|.++++|+||||..|+-. .+++..+. -.+++-.++++..
T Consensus 336 ~al--------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~--~~vte~~tGvdl~~~~lr~a~G 390 (540)
T 3glk_A 336 KTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTEMIADVNLPAAQLQIAMG 390 (540)
T ss_dssp HHH--------TCCEEEEEEEEEETTSCEEEEEEECSCCTT--HHHHHHHHTCCHHHHHHHHHTT
T ss_pred HHc--------CCccceEEEEEEcCCCCEEEEEEECCCCCc--chhhHhHhCCCHHHHHHHHHCC
Confidence 665 566888999999999999999999999753 45555333 2556666666544
No 44
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.19 E-value=2.3e-06 Score=102.10 Aligned_cols=158 Identities=16% Similarity=0.245 Sum_probs=59.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+||.++++.+++...+..... .+..++||+||+.| + ++.+-++.........+.
T Consensus 155 vVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-----r--ei~V~v~~d~~G~vv~l~-- 225 (681)
T 3n6r_A 155 VMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-----R--HIEIQVLCDSHGNGIYLG-- 225 (681)
T ss_dssp ------------------------------------------------CCSC-----E--EEEEEEECCSSSCCEEEE--
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-----c--EEEEEEEEeCCCCEEEEe--
Confidence 89999999999999999998888766643111 14579999999863 3 455555544332222221
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|-|+.. . .| |+...... .......+..+|.+++
T Consensus 226 ---~rd~s~q----r----~~----------~k~~e~~P-------------------------a~~l~~~~~~~l~~~a 259 (681)
T 3n6r_A 226 ---ERECSIQ----R----RN----------QKVVEEAP-------------------------SPFLDEATRRAMGEQA 259 (681)
T ss_dssp ---EEECCCE----E----TT----------EECEEEES-------------------------CSSCCHHHHHHHHHHH
T ss_pred ---eeeccee----c----cC----------ccEEEecC-------------------------CCCCCHHHHHHHHHHH
Confidence 1112110 0 00 00000000 0001123344566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-+.+++||++|.++++|+||||..|+-. .+++..+. -.+++-.++++...
T Consensus 260 ~~~~~al--------g~~G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~G~ 319 (681)
T 3n6r_A 260 VALAKAV--------GYASAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQMIRVAAGE 319 (681)
T ss_dssp HHHHHTT--------TCCSEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHHHHHHHTSC
T ss_pred HHHHHHc--------CCCceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHHHHHHHCCC
Confidence 6655544 344678899999999999999999999765 45555333 25667777776543
No 45
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.14 E-value=1.5e-05 Score=94.07 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=93.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
+|+||..|+.|+||.++++.+++...+.... .....++||+||+.| + ++.+-++....... +.++ .
T Consensus 247 vVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-----r--ei~V~vl~D~~G~v-v~l~----~ 314 (587)
T 3jrx_A 247 LMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILADQYGNA-VSLF----G 314 (587)
T ss_dssp EEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-----E--EEEEEEEECSSSCE-EEEE----E
T ss_pred EEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEcCCCCE-EEEe----e
Confidence 8999999999999999999888876663211 124689999999852 4 45555554432221 2221 1
Q ss_pred eccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHHH
Q psy9020 839 RFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSL 918 (1105)
Q Consensus 839 RFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~tL 918 (1105)
|-|+.. . .-||...... .......+..+|.+++..++
T Consensus 315 rd~siq----r--------------r~qk~ie~aP-------------------------a~~l~~~~~~~i~~~A~~~a 351 (587)
T 3jrx_A 315 RDCSIQ----R--------------RHQKIVEEAP-------------------------ATIAPLAIFEFMEQCAIRLA 351 (587)
T ss_dssp EEEEEE----S--------------SSCEEEEEES-------------------------CCSSCHHHHHHHHHHHHHHH
T ss_pred eecccc----c--------------cccceeEecC-------------------------CCCCCHHHHHHHHHHHHHHH
Confidence 222110 0 0001000000 00011234455667776666
Q ss_pred HHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 919 LASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 919 lAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
.+. +..+..++||++|.++++|+||||..|+-. .+++..+. -.+++-.+++++.
T Consensus 352 ~al--------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e--~~vte~~tGvdlv~~~lria~G 406 (587)
T 3jrx_A 352 KTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTEMIADVNLPAAQLQIAMG 406 (587)
T ss_dssp HHH--------TCCEEEEEEEEECSSSCEEEEEEESSCCTT--HHHHHHHHTCCHHHHHHHHHTT
T ss_pred HHc--------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc--cceeccccCCCHHHHHHHHHCC
Confidence 665 556788999999999999999999999753 45555333 2455666666543
No 46
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.13 E-value=1.8e-05 Score=87.86 Aligned_cols=44 Identities=18% Similarity=0.445 Sum_probs=35.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIE 804 (1105)
+|+||..++.|+|+.++++.+++.+.+... ......++||+||+
T Consensus 144 vvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 144 YVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp EEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 999999999999999999998887765321 11113899999997
No 47
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.13 E-value=2e-05 Score=87.34 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=73.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC----CCCceEEeecccCCcccCCeEEEEEEEEEEee--cCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT----NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTS--AYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~----k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS--~nPLrVWlYr 834 (1105)
+|+||..++.|+|+.++++.+++...+..... ....++||+||+. |+ ++++.++... .+-..+.++.
T Consensus 159 ~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~~~~~~G~~~~~~~~ 231 (433)
T 2dwc_A 159 CHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-----DV--EVTELAVRHFDENGEIVTTFPK 231 (433)
T ss_dssp EEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCC-----SE--EEEECCEEEECTTSCEEEEEEC
T ss_pred EEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-----Ce--eEEEEEEecccCCCCEeEEEec
Confidence 99999999999999999999998877754221 1467999999983 43 4445444321 1111111111
Q ss_pred c-ceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHH
Q psy9020 835 E-SYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDG 913 (1105)
Q Consensus 835 e-gyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKei 913 (1105)
. +..+ . ..+. .++ +.. ......+..+|.++
T Consensus 232 ~~~~~~---~-----~~~~---~~~----------~~p----------------------------~~l~~~~~~~i~~~ 262 (433)
T 2dwc_A 232 PVGHYQ---I-----DGDY---HAS----------WQP----------------------------AEISEKAEREVYRI 262 (433)
T ss_dssp CEEEEE---S-----SSSE---EEE----------EES----------------------------CCCCHHHHHHHHHH
T ss_pred ccceEE---E-----cCEE---EEE----------EcC----------------------------CCCCHHHHHHHHHH
Confidence 0 0000 0 0000 000 000 00112233456666
Q ss_pred HHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCc
Q psy9020 914 IVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAA 960 (1105)
Q Consensus 914 Ii~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ 960 (1105)
+..++.+. +..+.+++||+++.+ .+|+||||..|+-+.
T Consensus 263 a~~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~~ 300 (433)
T 2dwc_A 263 AKRITDVL--------GGLGIFGVEMFVKGD-KVWANEVSPRPHDTG 300 (433)
T ss_dssp HHHHHHHH--------CSSEECEEEEEEETT-EEEEEEEESSCCGGG
T ss_pred HHHHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEeCCcCCCc
Confidence 66666655 457899999999988 999999999998653
No 48
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.12 E-value=8.3e-06 Score=90.86 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=88.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
||+||..++.|+|+.++++.+++...+.... .....++||+||+- ++ ++++-++....+.. +.+.
T Consensus 156 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-----~~--e~~v~~~~~~~G~~-~~~~- 226 (449)
T 2w70_A 156 VIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-----PR--HVEIQVLADGQGNA-IYLA- 226 (449)
T ss_dssp EEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-----CE--EEEEEEEECTTSCE-EEEE-
T ss_pred EEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-----Ce--EEEEEEEEcCCCCE-EEEe-
Confidence 9999999999999999999888876653211 01358999999984 23 45665554332222 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|.|+.. . + | ++..... |. ......+.++|.+++
T Consensus 227 ---~~~~~~~--~-~-----~----------~~~~~~~------p~-------------------~~l~~~~~~~i~~~a 260 (449)
T 2w70_A 227 ---ERDCSMQ--R-R-----H----------QKVVEEA------PA-------------------PGITPELRRYIGERC 260 (449)
T ss_dssp ---EEEEEEE--E-T-----T----------EEEEEEE------SC-------------------TTCCHHHHHHHHHHH
T ss_pred ---ceecccc--c-C-----C----------cceeeeC------Cc-------------------ccCCHHHHHHHHHHH
Confidence 1211110 0 0 0 0000000 00 001122334556666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +..+.+++||+++. +.+|+||||..|+-. .++....+ ..+.+-.+++++..
T Consensus 261 ~~~~~~l--------g~~G~~~ve~~~~~-~~~~viEiN~R~~~~--~~~~~~~~g~dl~~~~~~~~~G~ 319 (449)
T 2w70_A 261 AKACVDI--------GYRGAGTFEFLFEN-GEFYFIEMNTRIQVE--HPVTEMITGVDLIKEQLRIAAGQ 319 (449)
T ss_dssp HHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHHHTC
T ss_pred HHHHHHc--------CCCceEEEEEEEEC-CCEEEEEEECCCCcc--chHHHHHhCCCHHHHHHHHHCCC
Confidence 6666554 34478999999998 899999999998643 23332221 24555555655543
No 49
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.11 E-value=3.3e-06 Score=101.93 Aligned_cols=53 Identities=32% Similarity=0.516 Sum_probs=42.3
Q ss_pred EEEeCCCCCCCCcEEEEc---ChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMY---KLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~---sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
+|+||..|+.|+||.+++ +.+++...+.........++||+||. |+ |+|+.|+
T Consensus 523 vVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~------G~--E~~v~Vv 578 (750)
T 3ln6_A 523 IVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE------GT--EYRFFVL 578 (750)
T ss_dssp EEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC------CC--EEEEEEE
Confidence 999999999999999998 77887766643211246899999997 64 8998876
No 50
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.09 E-value=1.7e-05 Score=90.55 Aligned_cols=161 Identities=11% Similarity=0.100 Sum_probs=89.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------------CCCCCceEEeecccCCcc----cC--CeEEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------------NTNDPRFVVQKYIERPLL----IY--NTKFDIRQWFLV 822 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------------~~k~~~yVVQKYIEnPLL----Id--GRKFDIRVYVLV 822 (1105)
+|+||..|+.|+|+.++++.+++.+.+... ......++||+||+-+-. ++ +.-|.++..+.
T Consensus 177 vVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~- 255 (474)
T 3vmm_A 177 LILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMA- 255 (474)
T ss_dssp EEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEE-
T ss_pred EEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEE-
Confidence 899999999999999999988876655321 012468999999985421 11 22366665431
Q ss_pred eecCCcEEEEEccceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhh
Q psy9020 823 TSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVW 902 (1105)
Q Consensus 823 TS~nPLrVWlYregyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~W 902 (1105)
......+.+. -|.++..| ...+|.+. ...
T Consensus 256 -dg~~~~v~i~----~~~~~~~~-----~~~~~~~P-----------------------------------------a~l 284 (474)
T 3vmm_A 256 -DGEYFPIAIH----DKTPQIGF-----TETSHITP-----------------------------------------SIL 284 (474)
T ss_dssp -TTEEEEEEEE----EECCCBTT-----BCCEEEES-----------------------------------------CCC
T ss_pred -CCeEEEEEEE----eeccCCCc-----cceEEEEC-----------------------------------------CCC
Confidence 1111111111 12222110 01111111 001
Q ss_pred HhhhhhhHHHHHHHHHHHhhhccCCCCCceeEEE-EEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhh
Q psy9020 903 QKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYG-ADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVV 980 (1105)
Q Consensus 903 ed~I~pqIKeiIi~tLlAaqd~l~~rkncFELyG-~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVV 980 (1105)
...+...|.+++..++.+. +.....+ +||++|.++++|+||||..|+=....++..... -.+.+-+++++
T Consensus 285 ~~~~~~~l~~~a~~~~~al--------G~~g~~~~vef~~~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a 356 (474)
T 3vmm_A 285 DEEAKKKIVEAAKKANEGL--------GLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVL 356 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEEEEGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCCCccEEEEEEEcCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHH
Confidence 1223445667777766665 4444554 999999999999999998876333334333222 13444455555
Q ss_pred h
Q psy9020 981 V 981 (1105)
Q Consensus 981 V 981 (1105)
+
T Consensus 357 ~ 357 (474)
T 3vmm_A 357 C 357 (474)
T ss_dssp H
T ss_pred c
Confidence 5
No 51
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.08 E-value=1.1e-05 Score=85.64 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=21.9
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
-+|+||..++.|+|+.++++.+++...+.. ...++||+||+ |+.+.+.++
T Consensus 151 P~vvKp~~g~g~~gv~~v~~~~el~~~~~~----~~~~lvee~i~------G~e~~v~~~ 200 (331)
T 2pn1_A 151 PVFVKPRNGSASIEVRRVETVEEVEQLFSK----NTDLIVQELLV------GQELGVDAY 200 (331)
T ss_dssp CEEEEESBC---------------------------CEEEEECCC------SEEEEEEEE
T ss_pred CEEEEeCCCCCCCCeEEeCCHHHHHHHHHh----CCCeEEEecCC------CcEEEEEEE
Confidence 399999999999999999998888776542 35899999998 666665544
No 52
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.08 E-value=1.1e-05 Score=90.36 Aligned_cols=54 Identities=13% Similarity=0.305 Sum_probs=38.1
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLV 822 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLV 822 (1105)
+|+||..++.|+|+.++++.+++...+..... ....++||+||+ |+ ++++.++.
T Consensus 167 vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 167 LVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp EEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 99999999999999999999988777643211 135799999998 54 55665554
No 53
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.07 E-value=1.3e-05 Score=89.91 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=31.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIE 804 (1105)
+|+||..++.|+|+.++++.+++...+.... .....+|||+||+
T Consensus 161 vVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 210 (451)
T 2yrx_A 161 IVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE 210 (451)
T ss_dssp EEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC
T ss_pred EEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc
Confidence 9999999999999999999988877653210 1136899999998
No 54
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.07 E-value=2.3e-05 Score=90.69 Aligned_cols=156 Identities=12% Similarity=0.149 Sum_probs=89.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC--CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN--TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~--~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
+|+||..++.|+||.++++.+++...+.... .....++||+||+. |+ ++.+-++....... +.++ .
T Consensus 237 vVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-----~~--e~sv~vl~d~~G~v-v~l~----~ 304 (554)
T 1w96_A 237 VMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-----AR--HLEVQLLADQYGTN-ISLF----G 304 (554)
T ss_dssp EEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-----CE--EEEEEEEECTTSCE-EEEE----E
T ss_pred EEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-----Cc--EEEEEEEEcCCCCE-EEEe----e
Confidence 9999999999999999999988876663211 12468999999984 44 34444444332211 1111 1
Q ss_pred ecccc-CCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 839 RFCSQ-NYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 839 RFASq-~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
|.|+. .+. ++..... | . ......+.++|.+++..+
T Consensus 305 ~~~~~~~~~-------------------~k~~~~~---P---~-------------------~~l~~~~~~~i~~~a~~~ 340 (554)
T 1w96_A 305 RDCSVQRRH-------------------QKIIEEA---P---V-------------------TIAKAETFHEMEKAAVRL 340 (554)
T ss_dssp EEEEEEETT-------------------EEEEEEE---S---C-------------------CSSCHHHHHHHHHHHHHH
T ss_pred eeeeeEeec-------------------cceeeeC---C---C-------------------cCCCHHHHHHHHHHHHHH
Confidence 11111 000 0000000 0 0 000122334566666666
Q ss_pred HHHhhhccCCCCCceeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHH-HHHHHHHHHHhhhc
Q psy9020 918 LLASQDSFDHRKNCFELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARL-CAQVLEDVIKVVVD 982 (1105)
Q Consensus 918 LlAaqd~l~~rkncFELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~L-k~qVLeDtLkVVVD 982 (1105)
+.+. +.-+.+++||++| .++++|+||||..|+-. .++.... -..+.+-++++++.
T Consensus 341 ~~al--------g~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~--~~~~~~~~G~dl~~~~~~~a~G 397 (554)
T 1w96_A 341 GKLV--------GYVSAGTVEYLYSHDDGKFYFLELNPRLQVE--HPTTEMVSGVNLPAAQLQIAMG 397 (554)
T ss_dssp HHHH--------TCCEEEEEEEEECTTTCCEEEEEEECSCCTT--THHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCcc--eehhhhhcCCCHHHHHHHHHcC
Confidence 6554 4447789999998 88999999999988765 3444321 12445555555443
No 55
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.05 E-value=1.8e-05 Score=85.16 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=30.1
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFLV 822 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLV 822 (1105)
-||+||..|+.|+||.++++ ....++||+||+ |+ ++++.++.
T Consensus 135 P~vvKP~~g~gs~Gv~~v~~-------------~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 135 KFIIKPRTACAGEGIGFSDE-------------VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SEEEEESSCC----CBCCSS-------------CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEEec-------------CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 49999999999999999986 246899999998 65 45665554
No 56
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.02 E-value=3.7e-05 Score=86.10 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=40.9
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEEEEEe
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVT 823 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVT 823 (1105)
+|+||..++.|+|+.++++.+++...+.... .....++||+||+-+ + ++++-++..
T Consensus 160 vvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~~ 221 (461)
T 2dzd_A 160 IIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP-----K--HIEVQILGD 221 (461)
T ss_dssp EEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC-----E--EEEEEEEEC
T ss_pred EEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC-----e--EEEEEEEEc
Confidence 9999999999999999999888876653210 114679999999842 3 455555543
No 57
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.94 E-value=1.9e-05 Score=95.67 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=41.5
Q ss_pred EEEeCCCCCCCCcEEEE----cChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVM----YKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~----~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
+|+||..|+.|+||.++ .+.+++...+.........++||+||. | .|+|+.|+
T Consensus 528 vVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 528 VVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp EEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred EEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 99999999999999999 788887766532111245799999995 6 38999876
No 58
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.75 E-value=0.00018 Score=89.73 Aligned_cols=54 Identities=15% Similarity=0.402 Sum_probs=31.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC--CCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT--NDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~--k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
+|+||..++.|+|+.++.+.+++.+.+..... ....++||+||+-+ +.+++.+.
T Consensus 712 vvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-----~E~~V~~l 767 (1073)
T 1a9x_A 712 LVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-----VEVDVDAI 767 (1073)
T ss_dssp EEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCTTC-----EEEEEEEE
T ss_pred EEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-----cEEEEEEE
Confidence 89999999999999999999999888754321 24579999999831 25666554
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.74 E-value=2e-05 Score=94.02 Aligned_cols=158 Identities=18% Similarity=0.285 Sum_probs=87.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+|+.++++.+++...+..... ....++||+||+.| +- +.+-++...... .++++
T Consensus 181 vvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-----re--iev~v~~d~~G~-vv~l~- 251 (675)
T 3u9t_A 181 VLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-----RH--VEIQVFADRHGH-CLYLN- 251 (675)
T ss_dssp BCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-----BC--EEEEEEECSSSC-EEEEE-
T ss_pred EEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-----cE--EEEEEEEcCCCC-EEEEe-
Confidence 89999999999999999999999887753221 14579999999964 33 334344332211 12221
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|-|+... .| |+..... | .......+..+|.+++
T Consensus 252 ---~rd~s~qr--------~~----------qk~ie~~------P-------------------a~~l~~~~~~~l~~~a 285 (675)
T 3u9t_A 252 ---ERDCSIQR--------RH----------QKVVEEA------P-------------------APGLGAELRRAMGEAA 285 (675)
T ss_dssp ---EEECCCBS--------SS----------SBCEEEE------S-------------------CSSCCHHHHHHHHHHH
T ss_pred ---ccccceee--------cc----------ceEEEEC------C-------------------CCCCCHHHHHHHHHHH
Confidence 12222100 00 0000000 0 0001223445566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +..+.+++||++|.++++|+||||..|+-. .+++..+. -.+++-.++++...
T Consensus 286 ~~~~~al--------g~~G~~~vEf~~~~dG~~~~iEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~G~ 345 (675)
T 3u9t_A 286 VRAAQAI--------GYVGAGTVEFLLDERGQFFFMEMNTRLQVE--HPVTEAITGLDLVAWQIRVARGE 345 (675)
T ss_dssp HHHHHHT--------TCCSEEEEECCBCTTSCBCBCEEESSCCTT--HHHHHHTTTCCHHHHHHHHHTTC
T ss_pred HHHHHHc--------CCccceEEEEEEcCCCCEEEEeccccccCC--chhhhhhcCCCHHHHHHHHHCCC
Confidence 6666655 455789999999999999999999999763 34444332 24566667776543
No 60
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.66 E-value=0.00027 Score=76.49 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=31.5
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEE
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIR 817 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIR 817 (1105)
-+|+||..++.|+|+.++++.+++.. ....+++|+||. |+.+.+-
T Consensus 127 P~vvKp~~g~g~~gv~~v~~~~~~~~-------~~~~~~~ee~i~------g~e~sv~ 171 (363)
T 4ffl_A 127 PYFVKPPCESSSVGARIIYDDKDLEG-------LEPDTLVEEYVE------GEVVSLE 171 (363)
T ss_dssp CEEEECSSCCTTTTCEEEC------C-------CCTTCEEEECCC------SEEEEEE
T ss_pred CEEEEECCCCCCcCeEEeccHHHhhh-------hccchhhhhhcc------CcEEEEE
Confidence 38999999999999999998877532 245799999996 6655543
No 61
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.65 E-value=0.00012 Score=92.72 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcC------CCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATN------TNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~------~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..++.|+|+.++++.+++...+.... .....++||+||+. ++ ++.+-++....... +.+.
T Consensus 183 vVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-----~r--EisV~vl~Dg~g~v-v~l~- 253 (1236)
T 3va7_A 183 VMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-----AR--HVEIQMMGDGFGKA-IAIG- 253 (1236)
T ss_dssp --------------------------------------------------C-----CE--EEEEEEEEESSSCE-EEEE-
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-----Ce--EEEEEEEecCCceE-EEEe-
Confidence 8999999999999999999888876664311 12457999999984 24 44444544332211 1110
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
.|-|+.. . .+ ++..... |. ......+..+|.+++
T Consensus 254 ---~rd~s~q----r-------~~-------~k~~e~~------Pa-------------------~~l~~~~~~~l~~~a 287 (1236)
T 3va7_A 254 ---ERDCSLQ----R-------RN-------QKVIEET------PA-------------------PNLPEATRAKMRAAS 287 (1236)
T ss_dssp ---EEEEEEE----E-------TT-------EEEEEEE------SC-------------------SSCCHHHHHHHHHHH
T ss_pred ---eeeeeee----e-------cC-------cceEEEc------CC-------------------CCCCHHHHHHHHHHH
Confidence 1111100 0 00 0000000 00 001123344566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccC-CceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcC
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQN-FVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDR 983 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEd-gKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr 983 (1105)
..++.+. +.-+.+++||++|.+ +.+|+||||..++-. .+++..+. -.+++-.++++...
T Consensus 288 ~~~~~al--------g~~G~~~VEfivd~d~g~~y~iEINpRl~g~--~~~te~vtGvDlv~~~l~~a~G~ 348 (1236)
T 3va7_A 288 ERLGSLL--------KYKCAGTVEFIYDEQRDEFYFLEVNARLQVE--HPITEMVTGLDLVEWMLRIAAND 348 (1236)
T ss_dssp HHHHHHT--------TCEEEEEEEEEEETTTTEEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHHTTC
T ss_pred HHHHHHc--------CCcceEEEEEEEECCCCcEEEEEEECCCCCc--cHHHHHHHCCCHHHHHHHHHCCC
Confidence 6666554 555788999999985 999999999988643 35544432 25566667766543
No 62
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.64 E-value=0.0003 Score=77.94 Aligned_cols=68 Identities=6% Similarity=-0.012 Sum_probs=46.5
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhcCC
Q psy9020 906 IYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVDRR 984 (1105)
Q Consensus 906 I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVDr~ 984 (1105)
+..++++++..++.+. ++.+.+++||+++. +.+|++|||..|.-+..- +...+ ..+++..++.++...
T Consensus 202 ~~~~~~~~a~~i~~aL--------g~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~--t~~~~~~s~fe~~~ra~~G~p 270 (355)
T 3eth_A 202 QQARAEEMLSAIMQEL--------GYVGVMAMECFVTP-QGLLINELAPRVHNSGHW--TQNGASISQFELHLRAITDLP 270 (355)
T ss_dssp HHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGTT--HHHHSSSCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHC--------CCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccE--EeeeecCCHHHHHHHHHcCCC
Confidence 3445666666666655 67799999999997 489999999999875432 22221 345666777766543
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.57 E-value=0.00042 Score=86.55 Aligned_cols=140 Identities=15% Similarity=0.230 Sum_probs=81.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc--CCCCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEcccee
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT--NTNDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYL 838 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~--~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyV 838 (1105)
+|+||..++.|+|+.++++.+++.+.+... ......++||+||.-+ + ++.+-++....+.. +.+
T Consensus 166 vVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~-----~--E~~v~v~~d~~g~~-v~~------ 231 (1073)
T 1a9x_A 166 CIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW-----K--EYEMEVVRDKNDNC-IIV------ 231 (1073)
T ss_dssp EEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS-----E--EEEEEEEECTTCCE-EEE------
T ss_pred EEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-----e--EEEEEEEEeCCCCE-EEE------
Confidence 899999999999999999998887766321 1123579999999832 3 44454444322211 111
Q ss_pred eccc-cCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHHHHH
Q psy9020 839 RFCS-QNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGS 917 (1105)
Q Consensus 839 RFAS-q~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiIi~t 917 (1105)
|. +.++.. .+| +. .++. . .|. ....+..+..|++++..+
T Consensus 232 --~~~e~~dp~----~v~-~g----~s~~--~--------~Pa-------------------~~l~~~~~~~l~~~a~~i 271 (1073)
T 1a9x_A 232 --CSIENFDAM----GIH-TG----DSIT--V--------APA-------------------QTLTDKEYQIMRNASMAV 271 (1073)
T ss_dssp --EEEEESSCT----TSC-GG----GSCE--E--------ESC-------------------CSCCHHHHHHHHHHHHHH
T ss_pred --EEEecccCC----ccc-cC----cEEE--E--------ecC-------------------CCCCHHHHHHHHHHHHHH
Confidence 11 111110 011 00 0000 0 000 001123345567777777
Q ss_pred HHHhhhccCCCCCce-eEEEEEEEecc-CCceEEEEeecCCCCCcCChh
Q psy9020 918 LLASQDSFDHRKNCF-ELYGADFMLAQ-NFVPWLIEINSGPCMAASTSV 964 (1105)
Q Consensus 918 LlAaqd~l~~rkncF-ELyG~DFMLDE-dgKPWLLEVNSSPSLs~ST~V 964 (1105)
+.+. +.- +..++||++|. ++++|+||||.. ++.++.+
T Consensus 272 ~~~l--------g~~~G~~~vdf~~~~~~g~~~viEiNpR--~~~ss~l 310 (1073)
T 1a9x_A 272 LREI--------GVETGGSNVQFAVNPKNGRLIVIEMNPR--VSRSSAL 310 (1073)
T ss_dssp HHHH--------TCCSEEEEEEEEECTTTCCEEEEEEESS--CCHHHHH
T ss_pred HHHc--------CcccCceEEEEEEECCCCCEEEEEecCC--CCccHHH
Confidence 6665 454 78999999997 799999999954 4444444
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.56 E-value=0.00031 Score=88.60 Aligned_cols=156 Identities=13% Similarity=0.269 Sum_probs=81.0
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+|+.++++.+++...+..... ....++||+||+.| +- +.+-++....... +.++
T Consensus 158 vVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-----re--ieV~vl~d~~G~v-v~l~- 228 (1150)
T 3hbl_A 158 LMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-----KH--IEVQVIGDEHGNI-VHLF- 228 (1150)
T ss_dssp EEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-----EE--EEEEEEECSSSCE-EEEE-
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-----cE--EEEEEEEeCCCCE-EEEE-
Confidence 89999999999999999998887776643211 14679999999853 33 4444443332221 1111
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|-|+... .....++.+. .......+..+|.+++
T Consensus 229 ---er~~s~qr---~~~k~~e~~P----------------------------------------a~~l~~~~~~~l~~~a 262 (1150)
T 3hbl_A 229 ---ERDCSVQR---RHQKVVEVAP----------------------------------------SVGLSPTLRQRICDAA 262 (1150)
T ss_dssp ---EEEEEEES---SSCEEEEESS----------------------------------------CSSCCHHHHHHHHHHH
T ss_pred ---eeccceec---cCceeEEecC----------------------------------------CCCCCHHHHHHHHHHH
Confidence 11111100 0000000000 0001122334566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
..++.+. +......+||++|.+ ++|+||||..|+-. .+++..+. -.+.+-.++++..
T Consensus 263 ~~~~~al--------G~~G~~~vEflvd~d-~~y~iEINpR~~g~--~~vte~~tGvDlv~~~i~ia~G 320 (1150)
T 3hbl_A 263 IQLMENI--------KYVNAGTVEFLVSGD-EFFFIEVNPRVQVE--HTITEMVTGIDIVKTQILVAAG 320 (1150)
T ss_dssp HHHHHHT--------TCCEEEEEEEEEETT-EEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHHHc--------CCCceEEEEEEEECC-eEEEEEEeCCCCCC--cceeehhcCCCHHHHHHHHHCC
Confidence 6666555 455678899999999 99999999999743 34433222 2456666666554
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.50 E-value=0.00024 Score=89.67 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=57.7
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCC------CCCceEEeecccCCcccCCeEEEEEEEEEEeecCCcEEEEEc
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYK 834 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIEnPLLIdGRKFDIRVYVLVTS~nPLrVWlYr 834 (1105)
+|+||..|+.|+|+.++++.+++...+..... ....++||+||+. |+ ++.+-++....... +.++
T Consensus 174 vVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~vl~D~~G~v-v~l~- 244 (1165)
T 2qf7_A 174 VMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQILGDTHGNV-VHLF- 244 (1165)
T ss_dssp ----------------------------------------------CCCSS-----EE--EEEEEEEECTTSCE-EEEE-
T ss_pred EEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEEEEcCCCcE-EEEE-
Confidence 89999999999999999998888766533111 1357999999985 34 45555554332211 2221
Q ss_pred cceeeccccCCccCCCCcccccccccccchhhhcccCCCCCCCCCCCCccChHHHHHHHHHhCCchhhHhhhhhhHHHHH
Q psy9020 835 ESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGI 914 (1105)
Q Consensus 835 egyVRFASq~Ysl~NLD~siHLTN~ltN~SIQK~~~n~~r~p~lp~gnmWSle~fqeyL~s~G~~~~Wed~I~pqIKeiI 914 (1105)
-|-|+.. ..+ ...++.+. . ......+..+|.+++
T Consensus 245 ---~r~~s~~--r~~-~~~~e~~P---------------------a-------------------~~l~~~~~~~i~~~a 278 (1165)
T 2qf7_A 245 ---ERDCSVQ--RRN-QKVVERAP---------------------A-------------------PYLSEAQRQELAAYS 278 (1165)
T ss_dssp ---EEEEEEE--ETT-EEEEEEES---------------------C-------------------TTCCHHHHHHHHHHH
T ss_pred ---eecccce--ecc-cceEEecc---------------------c-------------------ccCCHHHHHHHHHHH
Confidence 1212110 000 00000000 0 001122334566666
Q ss_pred HHHHHHhhhccCCCCCceeEEEEEEEec-cCCceEEEEeecCCCCCcCChhHHHHH-HHHHHHHHHhhhc
Q psy9020 915 VGSLLASQDSFDHRKNCFELYGADFMLA-QNFVPWLIEINSGPCMAASTSVTARLC-AQVLEDVIKVVVD 982 (1105)
Q Consensus 915 i~tLlAaqd~l~~rkncFELyG~DFMLD-EdgKPWLLEVNSSPSLs~ST~Vd~~Lk-~qVLeDtLkVVVD 982 (1105)
..++.+. +.-+.+++||++| +++++|+||||..|+... +++..+. -.+.+-.++++..
T Consensus 279 ~~i~~al--------g~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~~--~vte~~tGiDl~~~~i~~a~G 338 (1165)
T 2qf7_A 279 LKIAGAT--------NYIGAGTVEYLMDADTGKFYFIEVNPRIQVEH--TVTEVVTGIDIVKAQIHILDG 338 (1165)
T ss_dssp HHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTTH--HHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHHHc--------CCCcceeEEEEEECCCCCEEEEEEEcCCCCCc--hhhhhhhCCCHHHHHHHHHcC
Confidence 6666554 4456789999999 889999999999987542 3332221 2344555565544
No 66
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.40 E-value=0.00066 Score=75.56 Aligned_cols=52 Identities=6% Similarity=-0.001 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCC
Q psy9020 906 IYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMA 959 (1105)
Q Consensus 906 I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs 959 (1105)
+.+++.+++..++.+....+. ++..+.++++|.++.++.+|++|||..|+=.
T Consensus 267 ~~~~a~~~a~~v~~al~~~~~--~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg 318 (361)
T 2r7k_A 267 LLPQVFEMGDKLVAKAKELVP--PGMIGPFCLQSLCNENLELVVFEMSARVDGG 318 (361)
T ss_dssp GHHHHHHHHHHHHHHHHHHST--TCCCEEEEEEEEECTTSCEEEEEEESSBCGG
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CCccceEEEEEEEcCCCCEEEEEEcCCCCCC
Confidence 445566666666666544443 2678999999999999999999999988754
No 67
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=97.31 E-value=0.00071 Score=74.88 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCCceeEEEEEEEeccCCceEEEEeecCCCCCcCChhHHHHHHHHHHHHHH
Q psy9020 906 IYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIK 978 (1105)
Q Consensus 906 I~pqIKeiIi~tLlAaqd~l~~rkncFELyG~DFMLDEdgKPWLLEVNSSPSLs~ST~Vd~~Lk~qVLeDtLk 978 (1105)
+-++.+++++.+..+. .-...|+|++.+. ++++++|||.-|-...+ .-...-|..+|+.++-
T Consensus 250 Lt~eek~iA~kaa~a~---------G~~v~GVDlLrs~-~~~~V~EVNg~~fvk~~-~~yyd~~a~il~~~~~ 311 (330)
T 3t7a_A 250 LNAREKLIAWKVCLAF---------KQTVCGFDLLRAN-GQSYVCDVNGFSFVKNS-MKYYDDCAKILGNIVM 311 (330)
T ss_dssp CCHHHHHHHHHHHHHT---------TBSEEEEEEEEET-TEEEEEEEEESCCCSSC-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---------CCceEEEEEEEEC-CccEEEEeCCCccccCc-hhHHHHHHHHHHHHHH
Confidence 4455677888877765 3456799999985 57899999999999866 3334455666666543
No 68
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.66 E-value=0.0028 Score=69.65 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeeccc
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIE 804 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIE 804 (1105)
-.|+||..++.|+|++++++ +++...+... . ..+|||+||.
T Consensus 127 PviVKp~~g~ggkG~~~v~~-eel~~~~~~~--~-~~~IiEEfI~ 167 (320)
T 2pbz_A 127 LYFVRIEGPRGGSGHFIVEG-SELEERLSTL--E-EPYRVERFIP 167 (320)
T ss_dssp CEEEECC------------C-EECSCCCC-------CCEEEECCC
T ss_pred cEEEEECCCCCCCCEEEECh-HHHHHHHHhc--C-CCEEEEeeec
Confidence 38999999999999999999 8874332211 1 4799999998
No 69
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.14 E-value=0.0038 Score=72.36 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=52.8
Q ss_pred EEEEeCCCCCCCCcEEEEcCh--HH---HHHHHhhcCCCCCceEEeecccC---CcccCC----eEEEEEEEEEEeecCC
Q psy9020 760 LWIVKPGAKSRGRGIQVMYKL--ED---IIQKITATNTNDPRFVVQKYIER---PLLIYN----TKFDIRQWFLVTSAYP 827 (1105)
Q Consensus 760 IWILKPaaGSRGRGI~l~~sL--eE---Ilk~l~~~~~k~~~yVVQKYIEn---PLLIdG----RKFDIRVYVLVTS~nP 827 (1105)
-||+||+.++.|.|+.+-..+ ++ +.+.+.. ....||+|++|.. |.+++| |++|+|.|++.. .
T Consensus 364 ~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~---~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g-~-- 437 (474)
T 3n6x_A 364 ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILA---NPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG-K-- 437 (474)
T ss_dssp GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHH---SGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES-S--
T ss_pred heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHh---CCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC-C--
Confidence 499999999999999886543 23 3333322 2356999999983 555555 799999999863 2
Q ss_pred cEEEEEccceeeccccC
Q psy9020 828 LTVWMYKESYLRFCSQN 844 (1105)
Q Consensus 828 LrVWlYregyVRFASq~ 844 (1105)
+.|++-+|+.|+|..+
T Consensus 438 -~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 438 -TVSLVPGALCRVALRE 453 (474)
T ss_dssp -SEEECSCCEEEEECST
T ss_pred -ceEEecceEEEEecCC
Confidence 3788899999999863
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.01 E-value=0.021 Score=50.85 Aligned_cols=46 Identities=22% Similarity=0.537 Sum_probs=36.2
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhc------CCCCCceEEeecccCC
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITAT------NTNDPRFVVQKYIERP 806 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~------~~k~~~yVVQKYIEnP 806 (1105)
+|+||..++.|+|+.++++.+++...+... ......++||+||+-+
T Consensus 48 ~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 48 VMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp EEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred EEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 899999999999999999988887665321 0113579999999853
No 71
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=82.19 E-value=2.4 Score=48.58 Aligned_cols=116 Identities=10% Similarity=0.147 Sum_probs=80.1
Q ss_pred HhhchHHHHHHHHHhCcccccCCCccEEEEeCCCCCCCCcEEEEcChHHHHHHH----h-----hcCCCCCceEEeeccc
Q psy9020 734 IYQCSKHTVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKI----T-----ATNTNDPRFVVQKYIE 804 (1105)
Q Consensus 734 v~~cs~~lL~~Lk~~~PQ~~mdG~~NIWILKPaaGSRGRGI~l~~sLeEIlk~l----~-----~~~~k~~~yVVQKYIE 804 (1105)
++..+.++|.++++.+.++.++. ....|||-.+|.-|.||+.+.+.+++..+- + +....-...|||++|.
T Consensus 254 La~~Vd~lL~kIr~KY~eygI~~-~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~ 332 (432)
T 3k1t_A 254 LAEKVDSLLAKIRRKYAEYGVKQ-EPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVY 332 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCS-CCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcc
Confidence 55556889999999999988875 457899999999999999999998875321 1 1122236799999998
Q ss_pred CCcccCCeEEEEEEEEEEeecCCcEEEEEccceeeccccCCccCCCC-ccccccc
Q psy9020 805 RPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMH-ESVHLSN 858 (1105)
Q Consensus 805 nPLLIdGRKFDIRVYVLVTS~nPLrVWlYregyVRFASq~Ysl~NLD-~siHLTN 858 (1105)
.=-.++|-.-.-=+|++ .. ..-+|+.|+.+..=.-.|++ ..+|..-
T Consensus 333 T~E~~~~avAEPVVYmi-d~-------~vvGgFyRvh~~rg~dENLNapGm~F~p 379 (432)
T 3k1t_A 333 TFEHLKDAVAEPVIYMM-DH-------FVVGGFYRVHTSRGADENLNAPGMHFEP 379 (432)
T ss_dssp CCEEETTEEEEEEEEEE-TT-------EEEEEEEEEESCCSTTTTTSCCTTCEEE
T ss_pred hhhhhCCccccceEEEE-CC-------EEEEEEEEecCCCCCccCCCCCCCEeee
Confidence 64445655544444433 11 01256778888765556775 4677766
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=80.77 E-value=0.72 Score=55.18 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=37.5
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQWFL 821 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVYVL 821 (1105)
||+||..|..|.||.+++.-.+....... ......+|.|+|++.|- ++|.-.=|.+|++
T Consensus 530 yV~KPi~gReG~nV~i~~~~~~~~~~~~~-~y~~~~~IyQe~~~lp~-~d~~~~~iG~f~v 588 (619)
T 2io8_A 530 YAVKPIAGRCGSNIDLVSHHEEVLDKTSG-KFAEQKNIYQQLWCLPK-VDGKYIQVCTFTV 588 (619)
T ss_dssp EEEEETTCCTTTTCEEECTTSCEEEECCC-TTTTSCEEEEECCCCCE-ETTEEEEEEEEEE
T ss_pred EEEccCCCCCCCCEEEEeCCChhHhhccc-cccCCCeEEEEecCCCC-cCCcceEEEEEEE
Confidence 99999999999999999752221111111 11246799999999873 3443333555443
No 73
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=78.84 E-value=1.2 Score=53.56 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=20.8
Q ss_pred EEEeCCCCCCCCcEEEEcChHHHHHHHhhcCCCCCceEEeecccCCcccCCeEEEEEEE
Q psy9020 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKFDIRQW 819 (1105)
Q Consensus 761 WILKPaaGSRGRGI~l~~sLeEIlk~l~~~~~k~~~yVVQKYIEnPLLIdGRKFDIRVY 819 (1105)
||+||..|..|.||.+...-.++...... ......+|+|+|++.|- ++|.-.=+..|
T Consensus 545 yV~KPi~gReG~nV~I~~~~~~~~~~~~g-~y~~~~~IyQe~~~lp~-f~~~~~~iG~~ 601 (652)
T 2vob_A 545 YAKKPIVGRVGSNVIITSGDGVVHAESGG-KYGKRNMIYQQLFELKK-QDDYYAIIGGW 601 (652)
T ss_dssp EEEEECC----------------------------CEEEEECCC--C-BTTBCCEEEEE
T ss_pred eEeccCCCCCCCCEEEEcCCchhhhhccc-ccCCCCeEEEecccCCc-cCCcceEEEEE
Confidence 99999999999999998753332222211 12356899999999884 45433334444
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=65.75 E-value=2.5 Score=43.55 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=36.9
Q ss_pred EEEeCCCC-----CCCCcEEE-EcChHHHHHHHhhc---------CCCCCceEEeecccCCcccCCeEEEEEE
Q psy9020 761 WIVKPGAK-----SRGRGIQV-MYKLEDIIQKITAT---------NTNDPRFVVQKYIERPLLIYNTKFDIRQ 818 (1105)
Q Consensus 761 WILKPaaG-----SRGRGI~l-~~sLeEIlk~l~~~---------~~k~~~yVVQKYIEnPLLIdGRKFDIRV 818 (1105)
+|+||..+ +.|.|+.+ +++.+++.+.+... ......++||+||.. |+.+-+-+
T Consensus 59 vvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~-----g~E~~v~v 126 (238)
T 1wr2_A 59 VVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLKP-----GREVIIGV 126 (238)
T ss_dssp EEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCCC-----CEEEEEEE
T ss_pred EEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCCC-----CeEEEEEE
Confidence 79999998 66788888 78888876655221 111357999999973 66554444
No 75
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=48.75 E-value=27 Score=39.53 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=37.0
Q ss_pred EEEeC--CCCCCCCc---------EEEEcChHHHHHHHhhcCCC-------------CCceEEeecccCCcccCCeEEEE
Q psy9020 761 WIVKP--GAKSRGRG---------IQVMYKLEDIIQKITATNTN-------------DPRFVVQKYIERPLLIYNTKFDI 816 (1105)
Q Consensus 761 WILKP--aaGSRGRG---------I~l~~sLeEIlk~l~~~~~k-------------~~~yVVQKYIEnPLLIdGRKFDI 816 (1105)
+++|| ..|+||+| +.+.++.+++.+.+...... ...++||+|+.. |+.+-+
T Consensus 43 vVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~-----~~E~~v 117 (395)
T 2fp4_B 43 IVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDI-----SRETYL 117 (395)
T ss_dssp EEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCC-----SEEEEE
T ss_pred EEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCC-----ceeEEE
Confidence 69999 46777766 99999999988776432111 136899999863 666555
Q ss_pred EE
Q psy9020 817 RQ 818 (1105)
Q Consensus 817 RV 818 (1105)
-+
T Consensus 118 ~i 119 (395)
T 2fp4_B 118 AI 119 (395)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 76
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=30.56 E-value=83 Score=35.45 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=31.3
Q ss_pred EEEeCCCCC--CCC--cEEEEcChHHHHHHHhhcCC-------------CCCceEEeeccc
Q psy9020 761 WIVKPGAKS--RGR--GIQVMYKLEDIIQKITATNT-------------NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGS--RGR--GI~l~~sLeEIlk~l~~~~~-------------k~~~yVVQKYIE 804 (1105)
+++||..+. +|. |+.+..+.+++.+.+..... ....++||+|+.
T Consensus 43 vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 43 WVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp EEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred EEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 699998763 333 99999999888776643211 124689999987
No 77
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=27.92 E-value=46 Score=38.90 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=25.6
Q ss_pred CceeEEEEEEEeccCCceEEEEeec-CCCC
Q psy9020 930 NCFELYGADFMLAQNFVPWLIEINS-GPCM 958 (1105)
Q Consensus 930 ncFELyG~DFMLDEdgKPWLLEVNS-SPSL 958 (1105)
....++|+|++.|.+|+.|+||-|+ .|+-
T Consensus 140 ~~~~i~~~Dl~r~~dG~~~vlEdn~~~PSG 169 (474)
T 3n6x_A 140 VYAHIAGVDLVRTGENDFYVLEDNLRTPSG 169 (474)
T ss_dssp CSCSEEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred eEEEEEEEEEEECCCCCEEEEEeCCCCCch
Confidence 3456999999999999999999999 6875
No 78
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=24.45 E-value=1.9e+02 Score=34.10 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCCceeEEEEEEEeccCCceEE-EEeec-CCCCCcCChhHHHHHHHHHH
Q psy9020 928 RKNCFELYGADFMLAQNFVPWL-IEINS-GPCMAASTSVTARLCAQVLE 974 (1105)
Q Consensus 928 rkncFELyG~DFMLDEdgKPWL-LEVNS-SPSLs~ST~Vd~~Lk~qVLe 974 (1105)
.+-..++++-|+|+|.+...|. +|+|+ +=+|..-+....++...|+.
T Consensus 145 q~l~Lgl~RSDYMld~~~~~lkQVEfNTIsaSFggls~~v~~lHr~l~~ 193 (499)
T 3kal_A 145 EDIRMGIVRSDYMIDEKTKSLLQIEMNTISTSFALIGCLMTGLHKSLLS 193 (499)
T ss_dssp CCEEEEEEEEEEEEETTTTEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CceeeeeeehhhhcCCCCCceEEEEeechhhhcchHHHHHHHHHHHHHH
Confidence 3457899999999997655554 99999 66676656666666666554
No 79
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=22.28 E-value=1.3e+02 Score=34.10 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCC----cEEEEcChHHHHHHHhhcCC------CCCceEEeeccc
Q psy9020 761 WIVKPGAKSRGR----GIQVMYKLEDIIQKITATNT------NDPRFVVQKYIE 804 (1105)
Q Consensus 761 WILKPaaGSRGR----GI~l~~sLeEIlk~l~~~~~------k~~~yVVQKYIE 804 (1105)
|++||.....|+ |+.+..+.+++.+....... ....++||+||.
T Consensus 42 vVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 42 VVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp EEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred EEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 999998743444 99999999888777644221 125688999886
Done!