RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9020
(1105 letters)
>gnl|CDD|217380 pfam03133, TTL, Tubulin-tyrosine ligase family. Tubulins and
microtubules are subjected to several post-translational
modifications of which the reversible
detyrosination/tyrosination of the carboxy-terminal end
of most alpha-tubulins has been extensively analysed.
This modification cycle involves a specific
carboxypeptidase and the activity of the
tubulin-tyrosine ligase (TTL). The true physiological
function of TTL has so far not been established.
Tubulin-tyrosine ligase (TTL) catalyzes the
ATP-dependent post-translational addition of a tyrosine
to the carboxy terminal end of detyrosinated
alpha-tubulin. In normally cycling cells, the
tyrosinated form of tubulin predominates. However, in
breast cancer cells, the detyrosinated form frequently
predominates, with a correlation to tumour
aggressiveness. On the other hand, 3-nitrotyrosine has
been shown to be incorporated, by TTL, into the carboxy
terminal end of detyrosinated alpha-tubulin. This
reaction is not reversible by the carboxypeptidase
enzyme. Cells cultured in 3-nitrotyrosine rich medium
showed evidence of altered microtubule structure and
function, including altered cell morphology, epithelial
barrier dysfunction, and apoptosis. Bacterial homologs
of TTL are predicted to form peptide tags. Some of these
are fused to a 2-oxoglutarate Fe(II)-dependent
dioxygenase domain.
Length = 291
Score = 256 bits (656), Expect = 1e-77
Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 12/232 (5%)
Query: 753 HLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNT 812
D RN WIVKP A +RGRGI++ L I+++I VVQKYIERPLLI
Sbjct: 61 FEDNERNTWIVKPSASARGRGIRITNDLSQILKQI-----QSRPLVVQKYIERPLLIDGR 115
Query: 813 KFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNM---HESVHLSNNITNNAIQCKY 869
KFDIR + LVTS PL V++Y+E LRF S YS +HL TN +IQ K
Sbjct: 116 KFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYSPSVSDLDDVEMHL----TNYSIQKKS 171
Query: 870 QNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRK 929
+ N + P+ + W ++F YL ++W ++ +K + + AS+ +
Sbjct: 172 SSLNEDYNEPNGHKWSLFNFWKYLEEKDKEEIWLEIESIIIKTILAAEVEASRLNVQPLY 231
Query: 930 NCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVV 981
NCFELYG DFM+ +N PWL+E+N+ P + ++T + ARL Q+++DV+ VV
Sbjct: 232 NCFELYGFDFMIDENLKPWLLEVNASPSLHSTTKLDARLKEQLIDDVLNSVV 283
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 39.6 bits (93), Expect = 0.008
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERP 806
IVK A GRG++V+ E++ A +PR ++K+IE P
Sbjct: 156 IVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 37.4 bits (86), Expect = 0.043
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 75 LTNNQSQLSLPNLSCVLQEETSSPVPNTRDQEIQVTDTLPFTFTTSDYVLSTPNEYDDTL 134
L N+Q +L + ++ R TD L FT T S + ++ +
Sbjct: 237 LCNSQHKLHGSEVRNKNKKRIHRSTSTARYD----TDLLNFTGTPSPAAMEAQFKHKTSR 292
Query: 135 D---------EYDGTGEDCNPVTALTNNQSQLSLPNLS-CVLQEETSSPVPNTNATAHSK 184
+ +N S ++LP L+ + ++ NTNAT+HS
Sbjct: 293 VFKAPDKILFPPLDFTNTQSATPVTLSNSSSINLPTLNDSLGHHTETTTTTNTNATSHSH 352
Query: 185 DPGKNTS---QNNSQSLEPLENSADDT 208
K S + + L N+A
Sbjct: 353 GSKKKQSLAAEEYKDPYDALGNAARLH 379
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 36.7 bits (85), Expect = 0.073
Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 7/151 (4%)
Query: 26 QQRDQEIQATDTLPFTFTTSDYVLSTPDEYDGTPDENDGTGEDSNPVT---ALTNNQSQL 82
Q + +D LP TT + TG+ PV+ + +
Sbjct: 202 QTSSRPQTVSDPLPLHATTDWDTWFQA--TVSSSPSLLLTGDIPPPVSVFAPDDSTPLDI 259
Query: 83 SLPNLSCVLQEETSSPVPNTRDQEIQVTDTLPFTFTTSDYVLSTPNEYDDTLDEYDGTGE 142
SL N + + + T TS V + D + G+
Sbjct: 260 SLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGFSNF-GSN- 317
Query: 143 DCNPVTALTNNQSQLSLPNLSCVLQEETSSP 173
+ TN+ LP+ S + T P
Sbjct: 318 MYSEPLNPTNDSLLYGLPSSSSLYANRTIFP 348
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 34.3 bits (79), Expect = 0.35
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKI-TA-----TNTNDPRFVVQKYIERP 806
+VK A GRGI+++ E++I+ TA D ++K+IE P
Sbjct: 156 MVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 33.8 bits (78), Expect = 0.62
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMY---KLEDII---QKITATNTNDPRFVVQKYIERP 806
I+K A G G++V+Y +LED I Q I + D ++KY+E+P
Sbjct: 156 IIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 32.3 bits (74), Expect = 1.1
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 762 IVKPGAKSRGRGIQVM---YKLEDIIQKITATNTNDPRFVVQKYIERP 806
++KP S GR + + E +++ N F VQ+YI++P
Sbjct: 127 VLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKP 174
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 32.1 bits (73), Expect = 1.9
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 179 ATAHSKDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKT-SDDDPFGQSNEY 237
A A + S + ++ ++ DK + ++D F +
Sbjct: 25 AYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSS 84
Query: 238 DSDDEQPIRRTLDNLLQTSPSRILETP 264
SD I NL QT+ +++L
Sbjct: 85 TSDSNNIIDFIYKNLPQTNINQLLTKN 111
Score = 30.5 bits (69), Expect = 5.2
Identities = 21/194 (10%), Positives = 59/194 (30%), Gaps = 20/194 (10%)
Query: 56 DGTPDENDGTGEDSNPVTALTNNQSQLSLPNLSCVLQEETSSPVPNTRDQEIQVTDTLPF 115
D D T + + ++++ + + ++ + D++ D+
Sbjct: 29 DPQKDSTAKTTSHDSKKS--NDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDS--S 84
Query: 116 TFTTSDYVLSTPNEYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNLSCVLQEETSSPVP 175
T +++ + T + N + NL +S +
Sbjct: 85 TSDSNNIIDFIYKNLPQT-----NINQLLTKNKYDDNYSLTTLIQNLF-----NLNSDIS 134
Query: 176 NTNATAHSKDPGKNTSQNN------SQSLEPLENSADDTDHEENVDKTVEETSDKTSDDD 229
+ +S+ ++++N+ + + D + + T TS+K +
Sbjct: 135 DYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSP 194
Query: 230 PFGQSNEYDSDDEQ 243
Q N+ +S
Sbjct: 195 KPTQPNQSNSQPAS 208
Score = 30.1 bits (68), Expect = 7.8
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 166 LQEETSSPVPNTNATAHSKDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKT 225
+ + +P TN + + + + ++ L N D E + + T+D
Sbjct: 91 IIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSN 150
Query: 226 SDDDPFGQSNEYDSDDEQPIRRTLDNLLQTSPSRILETPRKKKYKQPES 274
+ D +++ +Q DN S + + K+ P+
Sbjct: 151 KNSDSSIKNDTDTQSSKQD---KADNQKAPSSNNTKPSTSNKQPNSPKP 196
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 32.2 bits (73), Expect = 2.0
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 184 KDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNEYDSDDE 242
D K+ Q + E E+ ++TD +E+ + +E++ ++ D G+ +E + D E
Sbjct: 634 ADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 32.0 bits (72), Expect = 2.0
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 199 EPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNEYDSDDEQPIRRTLDNLLQTSPS 258
E E S D + ++ + E ++ D P E + DDE LL +
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELN 344
Query: 259 RILETPRKKKYKQPESALVP 278
LE ++K +Q ESA P
Sbjct: 345 E-LEKGIEEKRRQMESATNP 363
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.
Length = 304
Score = 31.2 bits (72), Expect = 2.5
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 12/50 (24%)
Query: 937 ADFMLAQNFVPWLIEINSGPCMAASTSVT---AR--------LCAQVLED 975
DFML ++ P+L+E+N+ P M S S+ AR L ++LED
Sbjct: 251 VDFMLDEDGKPYLLEVNTQPGM-TSHSLVPMAARAAGISFSELVDRILED 299
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 31.9 bits (72), Expect = 2.6
Identities = 49/254 (19%), Positives = 77/254 (30%), Gaps = 45/254 (17%)
Query: 36 DTLPFTFTTSDYVLSTPDEYDGTPDENDGTGEDSNPVTALTNNQSQLSLPNLSCVLQEET 95
D+ P + T E G P+ G+ + N + NN +Q ++E+
Sbjct: 476 DSKPIPEQAASTYGQTSRERQGIPEPPPGSHQPGNRASQDLNNNNQKQ--------EDES 527
Query: 96 SSPVPNT--RDQE---IQVTDTLPFTFTTSDYVLSTPNEYDDTLDEYDGTGEDCNPVTAL 150
++P+ T R QE +Q D T D P E DD + G D V
Sbjct: 528 TNPIGKTSLRYQELTPVQEEDEPEDQ-TDDDDSSLPPLESDDDPGSDNEQGVDLTEVA-- 584
Query: 151 TNNQSQLSLPNLSCVLQEETSSPVPNTNATAHSKDPGKNTSQNNSQSLEPLENSADDTDH 210
P E+ +P S N S NS
Sbjct: 585 ---------PPAPVYRDEKEQDEIP----HPAQNPQDPTGSIGNVDSDILRSNSKPSAPL 631
Query: 211 EENVDKTVEETSDKTSDDDPFGQSNEYDSDDEQPIRRTL---------DNLLQTSPSRIL 261
EE + PF N Y ++P+R + D+L + P +
Sbjct: 632 EETYMHLLRTQG-------PFDAINYYHMMKDEPVRFSTKDGKEYTYPDSLEEAYPPWLT 684
Query: 262 ETPRKKKYKQPESA 275
E ++ + S
Sbjct: 685 EKEALEEENRYVSI 698
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 31.3 bits (72), Expect = 3.1
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERP 806
I+K A GRG++V+ ++ + + +P ++KY+E P
Sbjct: 156 IIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 31.3 bits (70), Expect = 4.0
Identities = 36/216 (16%), Positives = 60/216 (27%), Gaps = 31/216 (14%)
Query: 51 TPDEYDGTPDENDGTGEDSNPVTALTNNQSQLSLPNLSCVLQEETSSPVPNTRDQEIQVT 110
PD + + TA+ S V + +S P
Sbjct: 425 APDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPE 484
Query: 111 DTLPFTFTTS--------DYVLSTPNEYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNL 162
DT P + TTS ++TPN T + T +P + + + P
Sbjct: 485 DTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPT 544
Query: 163 S-------CVLQEETSSPVPNTNATAHSKDP------------GKNTSQNNSQSLEPLEN 203
Q SPV NTN + P G +S + Q P +
Sbjct: 545 GTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSS 604
Query: 204 S----ADDTDHEENVDKTVEETSDKTSDDDPFGQSN 235
++ T + + +++ P S
Sbjct: 605 HSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPST 640
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 449
Score = 30.9 bits (70), Expect = 4.1
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERP 806
I+K A GRG++V+ + +++++ I+ T + ++KYIE P
Sbjct: 156 IIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 31.1 bits (70), Expect = 4.2
Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 37/231 (16%)
Query: 59 PDENDGTGEDSNPVTALTNNQSQLSLPNLSCVLQEETSSPVPNTRDQEIQVTDTLPFTFT 118
P T ED NP T+++ + N + + PVP + + +
Sbjct: 292 PAPVPPTPEDDNPRP--TDDEFAVPNFNEGLDVPDNPQDPVPPPNEGKDGNPNEENLFPP 349
Query: 119 TSDYVLSTPNEYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNLSCVLQEETSSPVP--- 175
D V N + + G+ + + N +P + E+++ VP
Sbjct: 350 GDDEVPDESNVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDV 409
Query: 176 ----------NTNATAHSKDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKT 225
N N ++ G QN +PL+N D + N +K V +
Sbjct: 410 PMEPEDDRDNNFNEPKKPENKGDG--QNEPVIPKPLDNERD----QSNKNKQVNPGNRHN 463
Query: 226 SDD---DPFGQSNEYDSDDEQPIRRTLDNLLQTSPSRILETPRKKKYKQPE 273
S+D P G++NE + + + S I + P + +++QPE
Sbjct: 464 SEDRYTRPHGRNNENRNYNNK-------------NSDIPKHPERSEHEQPE 501
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 30.8 bits (70), Expect = 4.4
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 7/146 (4%)
Query: 109 VTDTLPFTFTTSDYVLSTPNEYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNLSCVLQE 168
T+ +P+ DY+ D + + Q ++ Q
Sbjct: 36 FTEYVPYGEELVDYLEEEDPTLRDPQISVVSSVTKLSKGPKDEPKQVKI-------PRQS 88
Query: 169 ETSSPVPNTNATAHSKDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDD 228
S V A A S T ++ + +E LE ++ E D V+E +D
Sbjct: 89 GLSEEVAEAEAKATSVAAEATTPKSIQELVEALEELLEELLKETASDPVVQELVSIFNDL 148
Query: 229 DPFGQSNEYDSDDEQPIRRTLDNLLQ 254
+ + D E I + L Q
Sbjct: 149 IDSIKEDNLKDDLESLIASAKEELDQ 174
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 30.8 bits (69), Expect = 5.0
Identities = 31/153 (20%), Positives = 46/153 (30%), Gaps = 16/153 (10%)
Query: 124 LSTPNEYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNLSCVLQEETSSPVPNTNATAHS 183
+ N DTLDEY GED ++ L+ V ++ + +
Sbjct: 325 VFESNMNRDTLDEYAPEGEDLR-----SDYDEDFEYDGLTTVRIDDHGFLPGREQTSKKA 379
Query: 184 KDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNE-YDSDDE 242
P + + + E D E T DDDP NE D+E
Sbjct: 380 AVPKGTSFYQAKWAEDEEEEDGQCND--------EESTMSAIDDDDPKENDNEEVAGDEE 431
Query: 243 QPI--RRTLDNLLQTSPSRILETPRKKKYKQPE 273
I + L R L R + + E
Sbjct: 432 SAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 30.5 bits (68), Expect = 6.4
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 188 KNTSQNNSQSLEPLENSADDT---DHEENVDKTVEETSDKTSDDDPFGQSNEYD 238
+N +N +++E +E + ++ + EEN ++ EE +++ D++P + EYD
Sbjct: 1082 ENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYD 1135
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 29.8 bits (67), Expect = 8.7
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 672 IRSVSVKSSKQEQGFSFNDCTSEVYELISKLQVQLMQSRHNSPADKEDEEKQENYMTSLD 731
+R + V+ +++ G V+E + + M S P + +++M L
Sbjct: 64 VRLLDVEHVEEKNGKP---SLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLL 120
Query: 732 KAIYQCSKHTVEH 744
K + C KH V H
Sbjct: 121 KGVAHCHKHGVMH 133
>gnl|CDD|177753 PLN00149, PLN00149, potassium transporter; Provisional.
Length = 779
Score = 29.8 bits (67), Expect = 8.9
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 196 QSLEPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNEYDSDDEQPIRRTLDNLLQT 255
+S +P N A + + E+ TV T + Q E DSD ++P T
Sbjct: 627 RSEKPEPNGAPENEEGEDERMTVVGTCSTHLEGI---QLREDDSDKQEPA--------GT 675
Query: 256 SPSRILETPRKKKYKQPESALVPQSPR 282
S R + +P + K+ +VP+SP+
Sbjct: 676 SELREIRSPPVSRPKKRVRFVVPESPK 702
>gnl|CDD|219026 pfam06432, GPI2, Phosphatidylinositol
N-acetylglucosaminyltransferase.
Glycosylphosphatidylinositol (GPI) represents an
important anchoring molecule for cell surface proteins.
The first step in its synthesis is the transfer of
N-acetylglucosamine (GlcNAc) from
UDP-N-acetylglucosamine to phosphatidylinositol (PI).
This step involves products of three or four genes in
both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG
A, PIG H and PIG C), respectively.
Length = 268
Score = 29.5 bits (67), Expect = 9.5
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 567 ESFVKATKSQIHVSGRRKGGVMKDFLFFNFHLSTVVVDRREDKMADTGMFELVYKQTISP 626
SF++ + ++V V+ D L + +S VV+ +F +Y+ +SP
Sbjct: 18 PSFLEELRRNVNVRTYDYWKVVLDSLVISQQISNVVL--------FLLVFVYIYQGRVSP 69
Query: 627 SQPYM 631
+
Sbjct: 70 ESLLL 74
>gnl|CDD|200574 cd10950, CE4_BsYlxY_like, Putative catalytic NodB homology domain
of uncharacterized protein YlxY from Bacillus subtilis
and its bacterial homologs. The Bacillus subtilis
genome contains six polysaccharide deacetylase gene
homologs: pdaA, pdaB (previously known as ybaN), yheN,
yjeA, yxkH and ylxY. This family is represented by
Bacillus subtilis putative polysaccharide deacetylase
BsYlxY, encoded by the ylxY gene, which is a member of
the carbohydrate esterase 4 (CE4) superfamily. Although
its biological function still remains unknown, BsYlxY
shows high sequence homology to the catalytic domain of
Bacillus subtilis pdaB gene encoding a putative
polysaccharide deacetylase (BsPdaB), which is essential
for the maintenance of spores after the late stage of
sporulation and is highly conserved in spore-forming
bacteria. However, disruption of the ylxY gene in B.
subtilis did not cause any sporulation defect. Moreover,
the Asp residue in the classical His-His-Asp
zinc-binding motif of CE4 esterases is mutated to a Val
residue in this family. Other catalytically relevant
residues of CE4 esterases are also not conserved, which
suggest that members of this family may be inactive.
Length = 188
Score = 29.2 bits (66), Expect = 9.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 405 LWTMRGDTLDWKRISKNTIVSRF 427
LWT+ DT+DWK+ S + IV R
Sbjct: 125 LWTV--DTIDWKKPSPDVIVDRV 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.387
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,703,733
Number of extensions: 5095599
Number of successful extensions: 4168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4139
Number of HSP's successfully gapped: 51
Length of query: 1105
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 998
Effective length of database: 6,191,724
Effective search space: 6179340552
Effective search space used: 6179340552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)