RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9020
(1105 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 232 bits (593), Expect = 6e-68
Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 20/252 (7%)
Query: 746 KKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIER 805
+ + + + N+WI K + ++G GI + +++ I + V+QKY+E
Sbjct: 135 RSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFI---DNQGQVHVIQKYLES 191
Query: 806 PLLIYNT--KFDIRQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHE-SVHLSNNITN 862
PLL+ KFDIR W LV + +++Y+E LR S+ YS N + + HL TN
Sbjct: 192 PLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDTNFQDMTSHL----TN 245
Query: 863 NAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQ 922
+ IQ ++ + + N F YL T ++ I +K+ I L +
Sbjct: 246 HCIQKEHSKN--YGRYEEGNEMFFEEFNQYLVTSLNINLENS-ILCQIKEIIRVCLSCLE 302
Query: 923 DSFDHRK---NCFELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKV 979
+ + + F+L+G DFM+ +N WLIE+N P + + A LC +++ I
Sbjct: 303 PAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPAC--AQKLYAELCKGIVDLAISS 360
Query: 980 VVDRREDKMADT 991
V E+ T
Sbjct: 361 VFPLNEENHKPT 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.2 bits (176), Expect = 8e-13
Identities = 90/697 (12%), Positives = 191/697 (27%), Gaps = 236/697 (33%)
Query: 192 QNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNEYDSDDEQPIRRTLDN 251
+ ++ +++ + E + + + + +D Q +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---- 128
Query: 252 LLQTSPSRILETPRKKKYKQPESALVPQSPR---TLTAMLASPRTVSAVLPYMNPLTSLS 308
R + Y + AL+ P + +L S +T A+ +
Sbjct: 129 ---------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--------DVC 171
Query: 309 RSNSDNCLFSKKNKLSAKDIIFNKKLKYLKSLVETAIKSRKTYTVLGHFPNIREAFRARG 368
S C K IF +L TVL + ++
Sbjct: 172 LSYKVQCKMDFK--------IF-----WL-----NLKNCNSPETVLEMLQKLL--YQIDP 211
Query: 369 WLEKYHDISEEYPRPTNDSKDEHMVSRLLRDAQVN--LLWTMRGDTLD--WKRISKNTIV 424
D S + + E + RLL+ LL L +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLL------VLLNVQ---NAKAW- 259
Query: 425 SRFPRAYFTTKSGSKKVFYDF-CQVGLCNHLQQMHWFSEAVHFPRCHNISSTDDLTELCD 483
F + C++ + +T
Sbjct: 260 ---------------NAF-NLSCKI-----------------------LLTTRFKQ---- 276
Query: 484 DFRLTACLSLLRFVVYSVDSAKQGFFHEDGKVPLCAVEFASRRCAEFLSCQMHEDIDLPS 543
+T LS S+D ++ K ++L C+ DLP
Sbjct: 277 ---VTDFLSAATTTHISLDHHSMTLTPDEVK------SL----LLKYLDCRPQ---DLPR 320
Query: 544 QVK---------IWDHQWDQFLTW-YYQVVHHGESFVKATKSQIHVSGRRKGGVMKDFLF 593
+V I + D TW ++ HV+ + +++ L
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWK----------------HVNCDKLTTIIESSL- 363
Query: 594 FNFHLSTVVVDRREDKMADTGMFELVYKQTISPSQPYMGQNLTLRGFKMLPD---LSPKL 650
L + R+ ++ + + P + L
Sbjct: 364 --NVLEP--AEYRK-----------MFDR-----------------LSVFPPSAHIPTIL 391
Query: 651 VRKSKYWSKSAKRERSFPLKPIRSVSVKSSKQEQGFSFNDCTSEVYELISKLQVQLMQSR 710
+ S W K + + + + S ++Q T + + +L+V+L
Sbjct: 392 L--SLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKES---TISIPSIYLELKVKLENEY 443
Query: 711 --HNSPADKEDEEK--QENYMT--SLDKAIYQ-CSKH--TVEHTKKF--WPQMHLDGFRN 759
H S D + K + + LD+ Y H +EH ++ + + LD FR
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FR- 501
Query: 760 LWIVKPGAKSRGRG------------IQVMYKLEDIIQKITATNTNDPRF-----VVQKY 802
++ K R +Q + + I NDP++ + +
Sbjct: 502 -FL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKYERLVNAILDF 551
Query: 803 IERP-LLIYNTKF-DIRQWFLVTSAYPLTVWMYKESY 837
+ + + +K+ D+ + L+ + ++E++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAI----FEEAH 584
Score = 56.8 bits (136), Expect = 3e-08
Identities = 96/614 (15%), Positives = 179/614 (29%), Gaps = 205/614 (33%)
Query: 612 DTGMFELVYKQTISPSQPYMGQNLTLRGFKMLPDLSPKLVRKSK---------------- 655
+TG + YK +S + N K + D PK + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFD---CKDVQD-MPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 656 --YWSKSAKRER--------------SFPLKPIRSVSVKSSKQEQGFS------FNDCTS 693
+W+ +K+E F + PI++ + S + + +ND +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND--N 123
Query: 694 EVY--------ELISKLQVQLMQSRHNSPADKEDEEKQENY-----M-----TSLDKAIY 735
+V+ + KL+ L++ R + T + A+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRP------------AKNVLIDGVLGSGKTWV--ALD 169
Query: 736 QCSKHTVEHT---KKFW--------PQMHLDGFRNLW-IVKPGAKSRGRGIQ-VMYKLED 782
C + V+ K FW P+ L+ + L + P SR + ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 783 IIQKITATNTNDPRFVVQKYIERPLLI----YNTK----FDIRQWFLVTSAYP-----LT 829
I ++ R + K E LL+ N K F++ L+T+ + L+
Sbjct: 230 IQAELR-------RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 830 VWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDE----NMWD 885
L S + E L + Q LP E N
Sbjct: 283 AATTTHISLDHHSMTLTP---DEVKSLLLKYLDCRPQD----------LPREVLTTNPRR 329
Query: 886 CYSFQAYLRTM-GVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQN 944
+R D W+ V + I+ S L + ++RK F+ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRK-MFD----RLSVFPP 383
Query: 945 FVPWLIEINSGPCMAASTSVTARLCAQVLEDVIKVVVDRREDKMADTGMFELVYKQTISP 1004
I T + + + V++ + VVV++ LV KQ
Sbjct: 384 SAH--I----------PTILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQ---- 420
Query: 1005 SQPYMGQNLTLRGFKMLPDLSPKLVRKSKYWSKSAKRERSVSVKSSKQEQGFSFNDCT-- 1062
+ T+ +P + +L K RS+ V + F +D
Sbjct: 421 -----PKESTIS----IPSIYLELKVKL---ENEYALHRSI-VDHYNIPKTFDSDDLIPP 467
Query: 1063 -------------------SEVYELISKLQVQL--MQS--RHNSPA---------DKEDE 1090
E L + + ++ RH+S A +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1091 EKQENYMTSLDKDG 1104
+ + Y+ D D
Sbjct: 528 KFYKPYIC--DNDP 539
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-07
Identities = 88/596 (14%), Positives = 162/596 (27%), Gaps = 214/596 (35%)
Query: 539 IDLPSQVKIWDH--Q-WDQFLTWYYQVVHHGESFVK--ATKSQIHVSGRRKGGVMKDFLF 593
+ +P+ + Q +QF + E F + + G+ FL
Sbjct: 20 LLVPTA--SFFIASQLQEQFNKILPEPT---EGFAADDEPTTPAELVGK--------FLG 66
Query: 594 FNFHLSTVVVDRREDKMADTGMFELVYKQTISP-SQPYMGQN----LTLRGFKMLPDLSP 648
+ V + + G F+ V ++ Y+ N L + L +
Sbjct: 67 Y--------VSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK----LLQEND 113
Query: 649 KLVRKSKYWSKSAKRERSFPLKPIRSVS----VKSSKQE----------QGFSFNDCTSE 694
+ K+K K+ R +P S ++ + QG + +D E
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEE 172
Query: 695 ---VYE--------LISKLQVQLMQ-SRHNSPADK------------EDEEKQ--ENYMT 728
+Y+ LI L + R A+K E+ ++Y+
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 729 SLDKA--------IYQCSKHTVE-HTKKFWPQMHLDGFRNLWIVKPGAKSRGRGIQVMYK 779
S + Q + + V F P + GA +G+
Sbjct: 233 S---IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-------GATGHSQGL----- 277
Query: 780 LEDIIQKITATNTNDPRFV--VQKYIERPLLIYNTKFDIRQWFLVTSAYPLTVWMYKESY 837
+ A + F V+K I +L F ++ Y
Sbjct: 278 ---VTAVAIAETDSWESFFVSVRKAIT--VL-----F----------------FIGVRCY 311
Query: 838 LRFCSQNYSLVNMHESVH---------LS-NNITNNAIQCKYQNGNRHRHLPDE------ 881
+ + + + +S+ LS +N+T +Q N HLP
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEIS 369
Query: 882 --NMWDC----------YSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRK 929
N Y LR K P D S+ F RK
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLR---------KAKAPSGLD-------QSRIPFSERK 413
Query: 930 NCFELYGADFMLAQNFVPWLIEINS---GPCMAASTSVTARLCAQVLEDVIKVVVDRRED 986
F F+P + S + ++ + +D++K V
Sbjct: 414 LKFSN---------RFLP----VASPFHSHLLVPASD-------LINKDLVKNNVSFNAK 453
Query: 987 KMADTGMFELVYKQTISPSQPYMGQNLTLRGFK--MLPDLSPKLVRKSKYWSKSAK 1040
+ VY T G + LR + + ++R W + +
Sbjct: 454 DIQIP-----VY-DTFD------GSD--LRVLSGSISERIVDCIIRLPVKWETTTQ 495
Score = 53.9 bits (129), Expect = 3e-07
Identities = 95/604 (15%), Positives = 174/604 (28%), Gaps = 215/604 (35%)
Query: 156 QLSLPNLSCVLQEETSSPVPNTNATAHS--KDPGKNTSQNNSQSL-EPLENSADDTDHEE 212
LS +L E VP + S ++ ++ L EP E A D +E
Sbjct: 10 TLSHGSL------EHVLLVPTASFFIASQLQE-------QFNKILPEPTEGFAAD---DE 53
Query: 213 N-------------VDKTVEETSDKTSDD----------DPFGQSNE-------YDSDDE 242
V VE + D + + + N+ +++
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 243 QPIRRTLDNLLQT--SPSRILETPRKKKYKQPESALVPQSPRTLTAMLASPRTVSAVL-- 298
+ +T + L++ + + + P KK SAL A+ + A+
Sbjct: 114 TTLVKTKE-LIKNYITARIMAKRPFDKK---SNSAL-------FRAVGEGNAQLVAIFGG 162
Query: 299 -----PYMNPLTSLSRSNSDNCLFSKKNKLSAKDIIFNKKLKYLKSLVETAIKSRKTYTV 353
Y L R L+ + L D+I + L L+ T + + K +T
Sbjct: 163 QGNTDDYFEEL----RD-----LYQTYHVL-VGDLI-KFSAETLSELIRTTLDAEKVFT- 210
Query: 354 LGHFPNIREAFRARGWLEKYHDISEEYPRPTNDSKDEHMVS----------------RLL 397
+ WLE P D +S +LL
Sbjct: 211 --------QGLNILEWLE------NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 398 RDAQVNLLWTMRGDTLDWKRISKNTIVSRFPRAYFTTKSGSKKVFYDFCQVGLCNHLQQM 457
L ++G T S+ + A ++ S + F+ + + +
Sbjct: 257 GFTPGELRSYLKGATG----HSQGLVT-----AVAIAETDSWESFFV-------SVRKAI 300
Query: 458 HW-FSEAVHFPRCHNISSTDDLTELCDDFRLTACLSLLRFVVYSVDSAKQGFFHEDGKVP 516
F V RC+ L S+L DS + E P
Sbjct: 301 TVLFFIGV---RCYEAYPNTSLPP-----------SILE------DSLENN---EGVPSP 337
Query: 517 LCAVEFASRRCAEFLSCQMHEDID-----LP--SQVKI------WDHQWDQF-------- 555
+ ++ ++ Q+ + ++ LP QV+I
Sbjct: 338 MLSISNLTQ-------EQVQDYVNKTNSHLPAGKQVEISLVNGA-----KNLVVSGPPQS 385
Query: 556 LTWYYQVVHHGESFVKAT----KSQIHVSGRRKGGVMKDFL-----FFNFHLSTVVVDRR 606
L Y + KA +S+I S R+ + FL F + L
Sbjct: 386 L---YGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHSHLLVPASDLIN 440
Query: 607 EDKMADTGMF---EL---VYKQTISPSQPYMGQNLTLRGFK--MLPDLSPKLVRKSKYWS 658
+D + + F ++ VY T G +L R + + ++R W
Sbjct: 441 KDLVKNNVSFNAKDIQIPVY-DTFD------GSDL--RVLSGSISERIVDCIIRLPVKWE 491
Query: 659 KSAK 662
+ +
Sbjct: 492 TTTQ 495
Score = 48.1 bits (114), Expect = 2e-05
Identities = 91/549 (16%), Positives = 161/549 (29%), Gaps = 155/549 (28%)
Query: 32 IQATDTLPFTFTTSDYVLSTPDEYDGTPDENDGTGEDSNPV-TALTNNQSQL------SL 84
+ A T P T LS G+ E V TA SQL L
Sbjct: 1 MDAYSTRPLT-------LS------------HGSLEHVLLVPTASFFIASQLQEQFNKIL 41
Query: 85 PNLSCVL--QEETSSPVPNTRDQEIQVTDTLPFTFTTSDYVL-STPNEYDD----TLDEY 137
P + +E ++P E+ V L + S V S ++D L E+
Sbjct: 42 PEPTEGFAADDEPTTPA------EL-VGKFLGYV---SSLVEPSKVGQFDQVLNLCLTEF 91
Query: 138 DGT---GEDCNPVTALTNNQSQLSLPNLSCVLQ------EETSSPVPNTNATA--HSKDP 186
+ G D + + A ++ +L +++ P + +A +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 187 GKNTS------QNNSQS-LEPLENSADD-----TDHEENVDKTVEETSDKTSDDDP-FGQ 233
G Q N+ E L + D + +T+ E T D + F Q
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 234 SNEYDSDD--EQPIRRTLDNLLQTSP-----------SRILETPRKKKYKQPE------- 273
+ + E P + L + P + + T + + E
Sbjct: 212 G--LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 274 ---------SALVPQSPRTLTAMLASPRTVSAVLPYMN-------PLTSLSRSNSDNCLF 317
+A+ + + S R VL ++ P TSL S ++ L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 318 SKKNK----LSAKDI----------IFNKKLKYLKSLVETAIKSRKTYTVLGHFP----- 358
+ + LS ++ N L K + + + K V G P
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLYG 388
Query: 359 ---NIREAFRARGWLEKYHDI--SEEYPRPTND----SKDEHMVSRLLRDAQVNLLWTMR 409
+R+A G L++ I SE + +N + H S LL A + +
Sbjct: 389 LNLTLRKAKAPSG-LDQ-SRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLV 444
Query: 410 GDTLDWKRISKNTIVSRFPRAYFTTKSGSKKVFYDFCQVG---LCNHLQQMHWFSEAVHF 466
+ + + V + T GS D + + + V +
Sbjct: 445 KNNVSFNAKDIQIPV-------YDTFDGS-----DLRVLSGSISERIVDCI--IRLPVKW 490
Query: 467 PRCHNISST 475
+T
Sbjct: 491 ETTTQFKAT 499
Score = 37.3 bits (86), Expect = 0.038
Identities = 37/204 (18%), Positives = 69/204 (33%), Gaps = 59/204 (28%)
Query: 830 VWMYKESYLRFCSQNY--SLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCY 887
VW +++ + Y S++++ NN N I + G R R EN Y
Sbjct: 1645 VWNRADNHFK---DTYGFSILDIVI-----NNPVNLTIHFGGEKGKRIR----EN----Y 1688
Query: 888 SFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADF----MLAQ 943
S + T+ + + I+ + + + +F K L F +
Sbjct: 1689 SAMIF-ETIVDGKLKTEKIFKEINEHS------TSYTFRSEKG--LLSATQFTQPALTLM 1739
Query: 944 NFVPW-LIE---INSGPCMAASTSV---TARLC--AQVL--EDVIKVV----------VD 982
+ ++ + A S+ A L A V+ E +++VV V
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 983 RREDKMADTGMFELVYKQTISPSQ 1006
R E ++ GM I+P +
Sbjct: 1799 RDELGRSNYGMI------AINPGR 1816
Score = 33.9 bits (77), Expect = 0.38
Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 71/240 (29%)
Query: 917 SLLASQDSFDHRKNCF----ELYGADFMLAQNFVPWLIEINSGPCMAASTSVTARLCAQV 972
L S S +H + L + F L E G + A L +
Sbjct: 8 PLTLSHGSLEHV---LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 973 LEDVIKVVVDRREDKMADTGMFELVYKQTISP-SQPYMGQN----LTLRGFKMLPDLSPK 1027
L V + + G F+ V ++ Y+ N L + L +
Sbjct: 65 LG-----YVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK----LLQENDT 114
Query: 1028 LVRKSKYWSKSAKRERSVSVKSSKQE----------------------QGFSFNDCTSE- 1064
+ K+K K+ R ++ + ++ QG + +D E
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEEL 173
Query: 1065 --VYE--------LISKLQVQLMQ-SRHNSPADK------------EDEEKQ--ENYMTS 1099
+Y+ LI L + R A+K E+ ++Y+ S
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.18
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 196 QSLEPLENS----ADDTDHEENVDKTVE 219
Q+L+ L+ S ADD+ + T+E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 31.5 bits (70), Expect = 0.82
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 266 KKKYKQPESALVPQSPRTLTAMLASPRTV 294
K+ K+ +++L + + A LA T+
Sbjct: 19 KQALKKLQASLKLYADDSAPA-LAIKATM 46
Score = 29.9 bits (66), Expect = 2.8
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 17/39 (43%)
Query: 486 RLTACLSLLRFVVYSVDSAKQGFFHEDGKVPLCAVEFAS 524
+L A L L Y+ DSA P A++ A+
Sbjct: 24 KLQASLKL-----YADDSA-----------PALAIK-AT 45
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 32.5 bits (73), Expect = 0.90
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 744 HTKKFWPQMHLDGFRNLW---IVKPGAKSRGRGIQV---MYKLEDIIQKITATNTNDPRF 797
+ + H + + +VK G G G + +DI + T T
Sbjct: 247 LIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTY---A 303
Query: 798 VVQKYIERPLLIYNTKFDIR 817
+ +I+ K+D+R
Sbjct: 304 TAEPFID-------AKYDVR 316
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 31.3 bits (71), Expect = 1.9
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 761 WIVKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIE 804
VKP S ++ + +E++ Q + + +VQ+ +
Sbjct: 152 VFVKPRNGSASIEVRRVETVEEVEQLF----SKNTDLIVQELLV 191
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A
{Streptomyces lividans} SCOP: c.6.2.3
Length = 195
Score = 29.8 bits (68), Expect = 3.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 405 LWTMRGDTLDWKRISKNTIVSRFPRA 430
+W + D+ DW S + IV R
Sbjct: 123 IWDV--DSQDWNNASTDAIVQAVSRL 146
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 30.6 bits (70), Expect = 3.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 937 ADFMLAQNFVPWLIEINSGPCMAASTSVT---AR--------LCAQVLED 975
D ML + +L+E N+ P M S S+ AR L ++LE
Sbjct: 256 IDVMLDSDGQFYLLEANTSPGM-TSHSLVPMAARQAGMSFSQLVVRILEL 304
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 30.2 bits (69), Expect = 3.3
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 937 ADFMLAQNFVPWLIEINSGPCMAASTSVT---AR--------LCAQVLED 975
ADFML + +E+N+ P M S+ AR L +VL
Sbjct: 265 ADFMLDAAGNAYFLEVNTAPGM-TDHSLPPKAARSIGIGYSELVVKVLSL 313
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 3.4
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 694 EVYELIS-KLQVQLMQSRHNSPADKEDEEKQENYMTSLDKAIYQCSKHTVEHTKKFWPQM 752
E +E I+ +L + + +N +D+ +C+ +K ++ Q
Sbjct: 169 EPFENIAIELP--------PNEILFSENNDMDNNNDGVDELNKKCT-FWDAISKLYYVQF 219
Query: 753 HLDGFRN 759
F+
Sbjct: 220 F---FKQ 223
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 30.1 bits (69), Expect = 4.4
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERP 806
I+K GRG++V+ ++ Q I+ T ++ ++KY+E P
Sbjct: 157 IIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP 207
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 4.5
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 39/101 (38%)
Query: 648 PKLVRKSKYWSKSAKRERSFPLKPIRSVSVKSSKQEQGFSFNDCTSEVYELISKLQVQLM 707
P+ +RK W + E+ K ++ + S EQ E K
Sbjct: 84 PESIRK---W----REEQR---KRLQELDAASKVMEQ------------EWREK------ 115
Query: 708 QSRHNSPADKEDEEKQENYMTSLDKAIYQCSKHTVEHTKKF 748
A K+ EE + ++K + K F
Sbjct: 116 -------AKKDLEEWNQRQSEQVEKNK----INNRIADKAF 145
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 29.8 bits (66), Expect = 4.7
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 741 TVEHTKKFWPQMHLDGFRNLWIVKPGAKSRGRG---IQVMYKLEDIIQKITATNTNDPRF 797
VE T + + +VK G G G ++ +DI + T
Sbjct: 152 LVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTY---A 208
Query: 798 VVQKYIERPLLIYNTKFDIR 817
+ +I+ +K+DIR
Sbjct: 209 TTEAFID-------SKYDIR 221
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.8 bits (68), Expect = 4.9
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 17/62 (27%)
Query: 937 ADFMLAQNFVPWLIEINSGPCMAASTSVT---AR--------LCAQVLEDVIKVVVDRRE 985
D M+ +P+++E+N+ P M S+ A L ++E ++ R+
Sbjct: 250 VDMMVKDG-IPYVMEVNTLPGM-TQASLLPKSADAAGIHYSKLLDMIIETSLR----VRK 303
Query: 986 DK 987
++
Sbjct: 304 EE 305
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 29.6 bits (67), Expect = 6.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITA--TNTNDPRFVVQKYIE 804
IVK +GI + K E+ I T +V+++IE
Sbjct: 148 IVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE 192
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 29.7 bits (68), Expect = 6.4
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 762 IVKPGAKSRGRGIQVMYKLEDIIQKITATNT------NDPRFVVQKYIERP 806
I+K A GRG++V+ +D+ + + + D ++KYI+ P
Sbjct: 160 ILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP 210
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 29.2 bits (65), Expect = 8.1
Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 405 LWTMRGDTLDWKRISKNTIVSR 426
+W + D+LDWK ++ +I++
Sbjct: 352 MWDV--DSLDWKSKNEASILTE 371
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 29.6 bits (67), Expect = 8.4
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 171 SSPVPNTNATAHSKDPGKNTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDDDP 230
+ + + + +++ + D +E++D +E+ D
Sbjct: 2 ADHSASGAPALSTNIESGKFDEKAAEAAAYQPKPKVEDDEDEDIDALIEDLESHDGHDA- 60
Query: 231 FGQSNEYDSDDEQPIRRTLDNLLQTSPSRILETP----RKKKY 269
E + R +++LQT L + R++KY
Sbjct: 61 ---EEEEEEATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRKY 100
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 29.3 bits (66), Expect = 8.5
Identities = 18/165 (10%), Positives = 51/165 (30%), Gaps = 6/165 (3%)
Query: 129 EYDDTLDEYDGTGEDCNPVTALTNNQSQLSLPNLSCVLQEETSSPVPNTNATAHSKDPGK 188
+ D + ++ GE + + P L LQ+ + + K
Sbjct: 8 DGADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQG---WDNLSL---KLALF 61
Query: 189 NTSQNNSQSLEPLENSADDTDHEENVDKTVEETSDKTSDDDPFGQSNEYDSDDEQPIRRT 248
+ + + +L L+ + + +++ T S + +D
Sbjct: 62 DNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDE 121
Query: 249 LDNLLQTSPSRILETPRKKKYKQPESALVPQSPRTLTAMLASPRT 293
++ + + + ++Y + P+ P ++A + S
Sbjct: 122 EESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALP 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.387
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,933,846
Number of extensions: 916673
Number of successful extensions: 1733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1708
Number of HSP's successfully gapped: 36
Length of query: 1105
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1001
Effective length of database: 3,798,009
Effective search space: 3801807009
Effective search space used: 3801807009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)