RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9020
         (1105 letters)



>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
           C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
          Length = 228

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 11/174 (6%)

Query: 824 SAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENM 883
           S+  ++     E Y    S ++            N      +     +      +    +
Sbjct: 52  SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTV 111

Query: 884 ---WDCYSFQAYLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFM 940
                   +  Y             I   +   +   +           N       DF+
Sbjct: 112 PNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFL 171

Query: 941 LAQNFVPWLIEINSGPCMAASTSVTARLCA-------QVLEDVIKVVVDRREDK 987
           L +N VP+L E N+ P    + S+  RL         ++++ +I    +     
Sbjct: 172 LDENNVPYLGEPNTLPGF-TNMSLFKRLWDYSDINNAKLVDMLIDYGFEDFAQN 224


>d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein
           5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 175

 Score = 31.2 bits (70), Expect = 0.34
 Identities = 15/118 (12%), Positives = 25/118 (21%), Gaps = 7/118 (5%)

Query: 455 QQMHWFSEAVHFPRCHNISSTDDLTELCDDFRLTACLSL-------LRFVVYSVDSAKQG 507
            +    SE V        S T  L  + D   L+            L   +         
Sbjct: 7   IRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWN 66

Query: 508 FFHEDGKVPLCAVEFASRRCAEFLSCQMHEDIDLPSQVKIWDHQWDQFLTWYYQVVHH 565
              +D       V   +       S      +D    +        +        +HH
Sbjct: 67  LVADDLLHSGICVIDGTAATNGSPSGNAELRLDQSVSLLHLQLILREGGAELTLYLHH 124


>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A
           [TaxId: 5061]}
          Length = 359

 Score = 30.5 bits (68), Expect = 1.3
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 14/120 (11%)

Query: 757 FRNLWI--VKPGAKSRGRGIQVMYKLEDIIQKITATNTNDPRFVVQKYIERPLLIYNTKF 814
            +N+ +  + P     G  I +       I  +T        +V+    +  + + N   
Sbjct: 137 IQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYI 196

Query: 815 DI-----------RQWFLVTSAYPLTVWMYKESYLRFCSQNYSLVNMHESVHLSNNITNN 863
           D              W +        V M   +Y+   S     V  +  +H  NN   +
Sbjct: 197 DGVSDYSATCDGYHYWAIYLDGDADLVTMKG-NYIYHTSGRSPKVQDNTLLHAVNNYWYD 255


>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 4/54 (7%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 930 NCFELYGADFMLAQNFVPWLIEIN--SGPCMAASTSVTARLCAQVLEDVIKVVV 981
              ++     +  ++   ++ E+   S P +        +L   ++   +  ++
Sbjct: 152 GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 205


>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
           {Escherichia coli, gene ddlB [TaxId: 562]}
          Length = 210

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 7/154 (4%)

Query: 832 MYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQA 891
           M K            L   H+   L     +         G              +    
Sbjct: 58  MSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDY- 116

Query: 892 YLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRKNCFELYGADFMLAQNFVPWLIE 951
                 ++D  Q     G++     +L A          C      D ML  +   +L+E
Sbjct: 117 --EAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLE 174

Query: 952 INSGPCMAASTSVTARLCAQV---LEDVIKVVVD 982
            N+ P M  S S+      Q       ++  +++
Sbjct: 175 ANTSPGM-TSHSLVPMAARQAGMSFSQLVVRILE 207


>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 333

 Score = 27.9 bits (61), Expect = 8.1
 Identities = 4/43 (9%), Positives = 16/43 (37%)

Query: 860 ITNNAIQCKYQNGNRHRHLPDENMWDCYSFQAYLRTMGVADVW 902
           I  N +  K  +     +   + + +  +   +++ + +  V 
Sbjct: 239 IAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVS 281


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
           C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 27.4 bits (59), Expect = 8.2
 Identities = 23/159 (14%), Positives = 42/159 (26%), Gaps = 9/159 (5%)

Query: 832 MYKESYLRFCSQNYSLVNMHESVHLSNNITNNAIQCKYQNGNRHRHLPDENMWDCYSFQA 891
           + K +              ++S  L     +         GN    +  E       +  
Sbjct: 50  VKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGI 109

Query: 892 YLRTMGVADVWQKVIYPGMKDGIVGSLLASQDSFDHRK-----NCFELYGADFMLAQNFV 946
           +     V                + +    +     +K      C  L   D  L  N  
Sbjct: 110 FRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGR 169

Query: 947 PWLIEINSGPCMAASTSVTARLCAQV---LEDVIKVVVD 982
             L E+N+ P    S S   R+ A     L ++I  ++ 
Sbjct: 170 IVLNEVNTLPGF-TSYSRYPRMMAAAGISLPELIDRLIV 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,955,793
Number of extensions: 182350
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 12
Length of query: 1105
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1010
Effective length of database: 1,103,246
Effective search space: 1114278460
Effective search space used: 1114278460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)