BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9025
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 3/111 (2%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVL 177
++ + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V V++
Sbjct: 76 VASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE 135
Query: 178 ATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
L++GS FGEISLL RRTA VR+ +S L+ L+ D+ NE +E YP
Sbjct: 136 MKLSDGSYFGEISLLT---RGRRTASVRADTYSRLYSLSVDNFNEVLEEYP 183
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KLR ++ PGDYI R+G VGK+MY ++ G
Sbjct: 69 VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAG 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ + LT+GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 129 VITKSSKEMKLTDGSYFGEICLLT---KGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 184
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
IN + + L + + LF + D + ++ KLR ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 69 INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN 229
V++ L +GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 129 VLTKGNKETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM 185
Query: 230 AQEVLKKKA 238
+ + A
Sbjct: 186 MRRAFETVA 194
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
IN + + L + + LF + D + ++ KLR ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L +GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 123 VLTKGNKETKLADGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 178
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
IN + + L + + LF + D + ++ KLR ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 122
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L +GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 123 VLTKGNKETKLADGSYFGEICLLT---RGRRTARVRADTYCRLYSLSVDNFNEVLEEYP 178
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 69 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L++GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 129 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 184
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L++GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 64 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 123
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L++GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 124 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 179
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L++GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 111 INVHIQTL-SKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQ 169
+N + + L + + LF + D + ++ KL+ ++ PGDYI R+G +GK+MY ++ G V
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
V++ L++GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP
Sbjct: 126 VLTKGNKEMKLSDGSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 181
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 123 LFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTE 182
LF + D + + KL+ ++ PGDYI R+G +GK+ Y ++ G V V++ L++
Sbjct: 79 LFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNKEXKLSD 138
Query: 183 GSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKA 238
GS FGEI LL RRTA VR+ + L+ L+ D+ NE +E YP + + A
Sbjct: 139 GSYFGEICLLT---RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPXXRRAFETVA 191
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVL 177
++ V F D + +V L ++ P DY+ ++G G M+ ++ G V ++ + V+
Sbjct: 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVI 132
Query: 178 AT-LTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKK 236
AT L++GS FGEI LL RR A V+ + LF L+ N+ ++ +P ++ +++
Sbjct: 133 ATSLSDGSYFGEICLLT---RERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEE 189
Query: 237 KA 238
A
Sbjct: 190 IA 191
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ R+A V + +L L+ D P E+ +
Sbjct: 73 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
K A
Sbjct: 128 KTA 130
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 15 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 74
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ R+A V + +L L+ D P E+ +
Sbjct: 75 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 129
Query: 236 KKA 238
K A
Sbjct: 130 KTA 132
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ R+A V + +L L+ D P E+ +
Sbjct: 71 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125
Query: 236 KKA 238
K A
Sbjct: 126 KTA 128
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 70
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ R+A V + +L L+ D P E+ +
Sbjct: 71 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125
Query: 236 KKA 238
K A
Sbjct: 126 KTA 128
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ +A V + +L L+ D P E+ +
Sbjct: 73 V--ELGPGAFFGEMALIS---GEPESATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
K A
Sbjct: 128 KTA 130
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 287
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ R+A V + +L L+ D P E+ +
Sbjct: 288 V--ELGPGAFFGEMALIS---GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 342
Query: 236 KKA 238
K A
Sbjct: 343 KTA 345
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V +
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP 72
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLK 235
V L G+ FGE++L++ +A V + +L L+ D P E+ +
Sbjct: 73 V--ELGPGAFFGEMALIS---GEPWSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 127
Query: 236 KKA 238
K A
Sbjct: 128 KTA 130
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 107 TDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
D+A++++ + L ++ LF+ LR L L ++ PG+++ R+G+ + +Y V +G
Sbjct: 67 ADIAMHLN-KELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG 125
Query: 167 QVQVVSGETVLATLTEGSVFGEISLLA--LAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
++V+ TVLA L +G + G SL + TN A+V++ + +L ++ L E +
Sbjct: 126 SMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTN---ANVKALTYCDLQYISLKGLREVL 182
Query: 225 EYYP 228
YP
Sbjct: 183 RLYP 186
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 114 HIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSG 173
+++ L V FQ E +L +L L Y G+YI R+G G +I+ G+V V
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214
Query: 174 ET------VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAI 224
++ L TL +G FGE AL G + RTA+V + V+++D I
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGE---KALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISL 191
++E+V + PV Y I ++G+VG +Y+++ G+V+V L T+ G VFGE+++
Sbjct: 55 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAI 114
Query: 192 LALAGTNRRTADVRS 206
L RTA V++
Sbjct: 115 LY---NCTRTATVKT 126
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV-VSGE 174
+ +SK LF D+ ++ + PV ++ G+ + ++G G Y+V G+V V V+GE
Sbjct: 130 KAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE 189
Query: 175 TVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
V ++EG FGE++L + GT R A V++ L+ +++D
Sbjct: 190 WV-TNISEGGSFGELAL--IYGTP-RAATVKAKTDLKLWGIDRD 229
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ LSKV + + ++ + L PV + G+ I +GE G + YI+ G V+ +
Sbjct: 248 EFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRS 307
Query: 176 V------LATLTEGSVFGEISLLALAGTNR-RTADVRSHG 208
+ L FGEI+LL NR R A V + G
Sbjct: 308 PNEEYVEVGRLGPSDYFGEIALL----LNRPRAATVVARG 343
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISL 191
++E+V + PV Y I ++G+VG +Y+++ G+V+V L T+ G VFGE+++
Sbjct: 39 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAI 98
Query: 192 LALAGTNRRTADVRS 206
L RTA V++
Sbjct: 99 LY---NCTRTATVKT 110
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ + K LF D+ ++ + PV ++ G+ + ++G+ G Y++ G++ V
Sbjct: 45 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 104
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
++ EG FGE++L + GT R A V++ L+ +++D
Sbjct: 105 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 144
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ + K LF D+ ++ + PV ++ G+ + ++G+ G Y++ G++ V
Sbjct: 38 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 97
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
++ EG FGE++L + GT R A V++ L+ +++D
Sbjct: 98 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 137
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ + K LF D+ ++ + PV ++ G+ + ++G+ G Y++ G++ V
Sbjct: 35 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 94
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
++ EG FGE++L + GT R A V++ L+ +++D
Sbjct: 95 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 134
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
++ + LSKV + + D+ + L PV + G I +GE G E +I+ G V+
Sbjct: 150 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 209
Query: 172 ----SGETV-LATLTEGSVFGEISLLALAGTNR-RTADVRSHG 208
+ E V + L FGEI+LL NR R A V + G
Sbjct: 210 RRSENEEFVEVGRLGPSDYFGEIALL----MNRPRAATVVARG 248
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ + K LF D+ ++ + PV ++ G+ + ++G+ G Y++ G++ V
Sbjct: 39 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 98
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
++ EG FGE++L + GT R A V++ L+ +++D
Sbjct: 99 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 138
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
++ + LSKV + + D+ + L PV + G I +GE G E +I+ G V+
Sbjct: 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 213
Query: 172 ----SGETV-LATLTEGSVFGEISLL 192
+ E V + L FGEI+LL
Sbjct: 214 RRSENEEFVEVGRLGPSDYFGEIALL 239
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGET 175
+ + K LF D+ ++ + PV ++ G+ + ++G+ G Y++ G++ V
Sbjct: 37 KAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 96
Query: 176 VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKD 218
++ EG FGE++L + GT R A V++ L+ +++D
Sbjct: 97 WATSVGEGGSFGELAL--IYGTP-RAATVKAKTNVKLWGIDRD 136
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
++ + LSKV + + D+ + L PV + G I +GE G E +I+ G V+
Sbjct: 152 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 211
Query: 172 ----SGETV-LATLTEGSVFGEISLLALAGTNR-RTADVRSHG 208
+ E V + L FGEI+LL NR R A V + G
Sbjct: 212 RRSENEEFVEVGRLGPSDYFGEIALL----MNRPRAATVVARG 250
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
+ LS+ +FQ D + L+ + V + G I +GE G +YI+ +G+V++
Sbjct: 26 EILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAP 85
Query: 172 -SGETVLATLTEGSVFGEISLL 192
E +L + +FGE+S+
Sbjct: 86 DGRENLLTIMGPSDMFGELSIF 107
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
Query: 112 NVHIQT-----LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
N++ Q+ L++ +FQ + + + L +L+PV + G + +GE G +YI+ +G
Sbjct: 19 NLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG 78
Query: 167 QVQVV-----SGETVLATLTEGSVFGEISLL 192
+V++ E +L + +FGE+S+
Sbjct: 79 KVKIGRRAPDGRENLLTIMGPSDMFGELSIF 109
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
+ L++ +FQ + + + L +L+PV + G + +GE G +YI+ +G+V++
Sbjct: 4 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 63
Query: 172 -SGETVLATLTEGSVFGEISLL 192
E +L + +FGE+S+
Sbjct: 64 DGRENLLTIMGPSDMFGELSIF 85
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
+ L++ +FQ + + + L +L+PV + G + +GE G +YI+ +G+V++
Sbjct: 6 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 65
Query: 172 -SGETVLATLTEGSVFGEISLL 192
E +L + +FGE+S+
Sbjct: 66 DGRENLLTIMGPSDMFGELSIF 87
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV---- 171
+ L++ +FQ + + + L +L+PV + G + +GE G +YI+ +G+V++
Sbjct: 3 EILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP 62
Query: 172 -SGETVLATLTEGSVFGEISLL 192
E +L + +FGE+S+
Sbjct: 63 DGRENLLTIMGPSDMFGELSIF 84
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 112 NVHIQT-----LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTG 166
N++ Q+ L++ +FQ + + + L +L+PV + G + +GE G +YI+ +G
Sbjct: 19 NLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG 78
Query: 167 QVQVV-----SGETVLATLTEGSVFGEISLL 192
+V++ E +L +FGE+S+
Sbjct: 79 KVKIGRRAPDGRENLLTIXGPSDMFGELSIF 109
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 143 LYLPGDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLL 192
+Y PG+ I R+G+ G+ Y+++ G V V G+ V+ L + FGE++LL
Sbjct: 152 IYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALL 202
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 147 GDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLL 192
G I ++G+ G Y+V+ G V + + + GS FGE++L+
Sbjct: 38 GATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALM 83
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 143 LYLPGDYICRKGEVGKEMYIVKTGQVQV----VSG-ETVLATLTEGSVFGEISLLALAGT 197
LY G I +G++G+ +Y+V +G+V++ + G E LA L G +FGE+SLL
Sbjct: 26 LYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL---DE 82
Query: 198 NRRTADVRSHGFSNLFVLNKDDLNEAIEYYP 228
R+A + + L L ++D I P
Sbjct: 83 GERSASAVAVEDTELLALFREDYLALIRRLP 113
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV 171
++ L+ + +FQ C L L ++P+ G + R+GE ++ +G +V
Sbjct: 9 GARVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVS 68
Query: 172 ----SGETVLATLTEGSVFGEISLL 192
G ++A G + GEI+LL
Sbjct: 69 HVGDDGVAIIARALPGMIVGEIALL 93
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 112 NVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV 171
++ L+ +FQ C L L ++P+ G + R+GE ++ +G +V
Sbjct: 9 GARVEDLAGXDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVS 68
Query: 172 ----SGETVLATLTEGSVFGEISLL 192
G ++A G + GEI+LL
Sbjct: 69 HVGDDGVAIIARALPGXIVGEIALL 93
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 120 KVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
+V LF++ DE LL + +L+P L+ Y+ R+G+ EM + G+++ V+
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT 62
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 GDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLL 192
G + +GE G YI+ G V VV G+ V+ TL EG FG+++L+
Sbjct: 64 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALV 110
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 147 GDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLLALAGTNRRTADVR 205
G + +GE G YI+ G V VV G+ V+ TL EG FG+++L+ A R + V
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP--RAASIVL 426
Query: 206 SHGFSNLFVLNKDDLN 221
+ ++K+D N
Sbjct: 427 REDNCHFLRVDKEDFN 442
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV 170
+++ L V+ F+ LLR++ L G + R+G++G Y V G + V
Sbjct: 37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDV 96
Query: 171 VSGET-------VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEA 223
ET + TL G+ FGE ++ R A + + S L + ++D
Sbjct: 97 KVSETSSHQDAVTICTLGIGTAFGE----SILDNTPRHATIVTRESSELLRIEQEDFKAL 152
Query: 224 IEYY 227
E Y
Sbjct: 153 WEKY 156
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV-----VS 172
L + LF D+ EL V GD + +G+ G +Y+V G+V++
Sbjct: 7 LRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66
Query: 173 GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN-AQ 231
E LA + + GE+SL RTA + L L DL + P A
Sbjct: 67 RENXLAVVGPSELIGELSLFD---PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVAT 123
Query: 232 EVLKKKARQLIKENAA 247
+L+ AR+L K N A
Sbjct: 124 ALLRAVARRLRKTNDA 139
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 147 GDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLL 192
G + +GE G YI+ G V VV G+ V+ TL EG FG+++L+
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALV 415
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV 170
+++ L V+ F+ LLR++ L G + R+G++G Y V G + V
Sbjct: 37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDV 96
Query: 171 VSGET-------VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEA 223
ET + TL G+ FGE ++ R A + + S L + ++D
Sbjct: 97 KVSETSSHQDAVTICTLGIGTAFGE----SILDNTPRHATIVTRESSELLRIEQEDFKAL 152
Query: 224 IEYY 227
E Y
Sbjct: 153 WEKY 156
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 147 GDYICRKGEVGKEMYIVKTGQVQVV-SGETVLATLTEGSVFGEISLLALAGTNRRTADVR 205
G + +GE G YI+ G V VV G+ V+ TL EG FG+++L+ A R + V
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDA--PRAASIVL 426
Query: 206 SHGFSNLFVLNKDDLN 221
+ ++K+D N
Sbjct: 427 REDNCHFLRVDKEDFN 442
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV 170
+++ L V+ F+ LLR++ L G + R+G++G Y V G + V
Sbjct: 37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDV 96
Query: 171 VSGET-------VLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEA 223
ET + TL G+ FGE ++ R A + + S L + ++D
Sbjct: 97 KVSETSSHQDAVTICTLGIGTAFGE----SILDNTPRHATIVTRESSELLRIEQEDFKAL 152
Query: 224 IEYY 227
E Y
Sbjct: 153 WEKY 156
>pdb|2Z69|A Chain A, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|B Chain B, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
pdb|2Z69|C Chain C, Crystal Structure Of The Sensor Domain Of The
Transcriptional Regulator Dnr From Pseudomonas
Aeruginosa
Length = 154
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
VH Q L LF+ L+EL+ V G Y+ R+GE Y + +G V++
Sbjct: 9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 68
Query: 172 ----SGETVLATLTEGSVFGEISLL 192
E +L E + F E +
Sbjct: 69 LTPEGQEKILEVTNERNTFAEAMMF 93
>pdb|3DKW|A Chain A, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|B Chain B, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|C Chain C, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|D Chain D, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|E Chain E, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|F Chain F, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|G Chain G, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|H Chain H, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|I Chain I, Crystal Structure Of Dnr From Pseudomonas Aeruginosa.
pdb|3DKW|J Chain J, Crystal Structure Of Dnr From Pseudomonas Aeruginosa
Length = 227
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 113 VHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV- 171
VH Q L LF+ L+EL+ V G Y+ R+GE Y + +G V++
Sbjct: 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 65
Query: 172 ----SGETVLATLTEGSVFGEISLL 192
E +L E + F E +
Sbjct: 66 LTPEGQEKILEVTNERNTFAEAMMF 90
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV------ 171
+ V LF+ + + ++V + +Y G+ I +GE YI+++G+V ++
Sbjct: 162 IESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTK 221
Query: 172 ------SGETVLATLTEGSVFGEISLL 192
+ E +A +G FGE++L+
Sbjct: 222 SNKNGGNQEVEIAHCHKGQYFGELALV 248
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 143 LYLPGDYICRKGEVGKEMYIVKTGQVQVV-----------SGETVLATLTEGSVFGEISL 191
+Y G+ I +G++ +IV++G+V++ +G +A G FGE++L
Sbjct: 294 VYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELAL 353
Query: 192 L 192
+
Sbjct: 354 V 354
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 143 LYLPGDYICRKGEVGKEMYIVKTGQVQVV-----------SGETVLATLTEGSVFGEISL 191
+Y G+ I +G++ +IV++G+V++ +G +A G FGE++L
Sbjct: 294 VYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELAL 353
Query: 192 L 192
+
Sbjct: 354 V 354
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 143 LYLPGDYICRKGEVGKEMYIVKTGQVQVV-----------SGETVLATLTEGSVFGEISL 191
+Y G+ I +G+ +IV++G+V++ +G +A G FGE++L
Sbjct: 183 VYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELAL 242
Query: 192 L 192
+
Sbjct: 243 V 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,410,590
Number of Sequences: 62578
Number of extensions: 285577
Number of successful extensions: 797
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 64
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)