RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9025
(361 letters)
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 73.2 bits (179), Expect = 2e-16
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKT 165
K + + + K LF D+ ++ + PV ++ G+ + ++G+ G Y++
Sbjct: 10 KDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQ 69
Query: 166 GQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIE 225
G++ V ++ EG FGE++L+ R A V++ L+ +++D +
Sbjct: 70 GEMDVYVNNEWATSVGEGGSFGELALI---YGTPRAATVKAKTNVKLWGIDRDSYRRILM 126
Query: 226 YYP 228
Sbjct: 127 GST 129
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 137
Score = 69.6 bits (169), Expect = 3e-15
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS----- 172
+ +V LF++ DE LL + +L+P L+ Y+ R+G+ EM + G+++ V+
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 173 -GETVLATLTEGSVFGEISLL------ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIE 225
G + L EG G+ L + + T V++ F L D+L
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 226 YYP 228
+
Sbjct: 128 QFR 130
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 66.7 bits (162), Expect = 5e-14
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 118 LSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV------ 171
+ + + + + ++V + +Y G+ I +G+ +IV++G+V++
Sbjct: 4 IESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGK 63
Query: 172 -----SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEY 226
+G +A G FGE+ AL R A + G ++ +
Sbjct: 64 SDIEENGAVEIARCLRGQYFGEL---ALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGP 120
Query: 227 YPN-AQEVLKKKARQLIK 243
+ + QL+
Sbjct: 121 CMEIMKRNIATYEEQLVA 138
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 65.6 bits (159), Expect = 1e-13
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV 170
+ Q ++ V LFQ A+L E+V LR G ICR GE G M+ V G V V
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65
Query: 171 VSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNA 230
+ V L G+ FGE++ L R+A V + +L L+ D P
Sbjct: 66 ATPNPV--ELGPGAFFGEMA---LISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEI 120
Query: 231 QEVLKKKARQ 240
E+ +K A +
Sbjct: 121 AEIFRKTALE 130
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 64.5 bits (156), Expect = 3e-13
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 96 KILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGE 155
L+ PL+ ++ +++ L V+ F+ LLR++ L G + R+G+
Sbjct: 5 ACLDKRPLE-RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGD 63
Query: 156 VGKEMYIVKTGQVQVV-------SGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG 208
+G Y V G + V + TL G+ FGE L R A + +
Sbjct: 64 IGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILD----NTPRHATIVTRE 119
Query: 209 FSNLFVLNKDDLNEAIEYYP 228
S L + ++D E Y
Sbjct: 120 SSELLRIEQEDFKALWEKYR 139
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 63.6 bits (154), Expect = 4e-13
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 106 KTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKT 165
KTD N + + LF++ D + +++ + L G+++ +G+ G Y++
Sbjct: 6 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDR 65
Query: 166 GQVQV----VSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLN 221
G + + FGE++L+ R A + + L+ L++
Sbjct: 66 GTFDIYVKCDGVGRCVGNYDNRGSFGELALM---YNTPRAATITATSPGALWGLDRVTFR 122
Query: 222 EAIE 225
I
Sbjct: 123 RIIV 126
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 62.9 bits (152), Expect = 7e-13
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 116 QTLSKVQLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS--- 172
+ LSKV + + D+ + L PV + G I +GE G E +I+ G V+
Sbjct: 2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61
Query: 173 ---GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPN 229
+ L FGEI+LL R A V + G L++ +
Sbjct: 62 ENEEFVEVGRLGPSDYFGEIALL---MNRPRAATVVARGPLKCVKLDRPRFERVLGPCS- 117
Query: 230 AQEVLKKKARQLIK 243
++LK+ +Q
Sbjct: 118 --DILKRNIQQYNS 129
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 61.6 bits (148), Expect = 6e-12
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 89 SSSEDENKILNNLPLKLKTDVAINVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYLPGD 148
DE+ IL L L+ ++ + ++ + LF + D + ++ KL+ ++ PGD
Sbjct: 41 GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGD 100
Query: 149 YICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG 208
YI R+G +GK+MY ++ G V V++ L++GS FGEI L RRTA VR+
Sbjct: 101 YIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEI---CLLTRGRRTASVRADT 157
Query: 209 FSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQ 240
+ L+ L+ D+ NE +E YP + + A
Sbjct: 158 YCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 189
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 53.7 bits (128), Expect = 1e-09
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 129 EALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQV-----VSGETVLATLTEG 183
+ L + Y + +GE + +Y + G V V E +L+ L +G
Sbjct: 3 DPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQG 62
Query: 184 SVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIK 243
GE+ L R+A VR+ + ++ + I+ P+ +L
Sbjct: 63 DFIGELGL--FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDI-------LMRLSA 113
Query: 244 ENAARERVSQPKLSTM 259
+ A R +V+ K+ +
Sbjct: 114 QMARRLQVTSEKVGNL 129
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 53.2 bits (127), Expect = 1e-09
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 111 INVHIQTLSKVQLFQDCDEALLRELVLKLRPVLYL-PGDYICRKGEVGKEMYIVKTGQVQ 169
+ + L ++ + REL L + G + +GE G YI+ G V
Sbjct: 5 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVN 64
Query: 170 VVSGETVLATLTEGSVFGEISLLALAGTNRRTADVRSHG-FSNLFVLNKDDLNEAIEYYP 228
VV + + LAL R A + + ++K+D N +
Sbjct: 65 VVIYGKG--VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE 122
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 52.5 bits (125), Expect = 4e-09
Identities = 10/140 (7%), Positives = 44/140 (31%), Gaps = 9/140 (6%)
Query: 122 QLFQDCDEALLRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV--SGETVLAT 179
++ +E L +++P + +G++ ++ + G+++++
Sbjct: 7 DVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI 66
Query: 180 LTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKAR 239
+ ++ + S + + + + ++ + R
Sbjct: 67 SRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSF-------CR 119
Query: 240 QLIKENAARERVSQPKLSTM 259
+K A ++ + T+
Sbjct: 120 YFLKALAKELGYAERRTVTL 139
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 51.5 bits (122), Expect = 9e-09
Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 115 IQTLSKVQLFQDCDEALLRELVLK--LRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS 172
TL ++ LFQ ++ K L + + G+ I + G ++ + G++ +V+
Sbjct: 5 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVT 64
Query: 173 -----GETVLATLTEGSVFGEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYY 227
TV+ + + S + +H + ++K + + Y
Sbjct: 65 NAKENIYTVIEQIEAPYLIEPQS--LFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY 122
Query: 228 PNAQEVLKKKARQLIKENAARERVSQPKL 256
+ + R + +L
Sbjct: 123 DIF-------RLNYMNIVSNRAQNLYSRL 144
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 50.2 bits (119), Expect = 2e-08
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 13/134 (9%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVS-----GETVLATLTEGSVF 186
L +L+ Y I G+ + ++ + G V ++ E ++ L G F
Sbjct: 5 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 64
Query: 187 GEISLL-ALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKEN 245
GE+ L R+A VR+ + ++ E + L +
Sbjct: 65 GELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEI-------LYTLGSQM 117
Query: 246 AARERVSQPKLSTM 259
A R R + K+ +
Sbjct: 118 ADRLRKTTRKVGDL 131
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 42.3 bits (98), Expect = 1e-05
Identities = 14/133 (10%), Positives = 46/133 (34%), Gaps = 14/133 (10%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVV-----SGETVLATLTEGSVF 186
L++L+ + +++ G+ + + + +++ I+ G ++ + + +
Sbjct: 3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62
Query: 187 GEISLLALAGTNRRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENA 246
+ R +V + S + + K+ + + +K+ +
Sbjct: 63 ASGF--IFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDREL-------LLFFLKDVS 113
Query: 247 ARERVSQPKLSTM 259
RV KL +
Sbjct: 114 EHFRVVSEKLFFL 126
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 30.7 bits (68), Expect = 0.079
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 142 VLYLPGDYICRKGEVGK--EMYIVKTGQVQVVSGETVLATLTEGSVFGEISLLALA-GTN 198
V + GD I G G Y V G V++ + + LT V A
Sbjct: 3 VSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQ 62
Query: 199 RRTADVRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKARQLIKENAARERVS 252
R + L L ++ E +++ + ++ L + ER++
Sbjct: 63 ERIYFAEAATDVRLEPLPENPDPEL------LKDLAQHLSQGLAEAYRRIERLA 110
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 28.5 bits (63), Expect = 1.3
Identities = 15/83 (18%), Positives = 25/83 (30%)
Query: 132 LRELVLKLRPVLYLPGDYICRKGEVGKEMYIVKTGQVQVVSGETVLATLTEGSVFGEISL 191
+R +L L + G+Y+ R E Y T + G + + L
Sbjct: 19 IRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFNLKGRTDAML 78
Query: 192 LALAGTNRRTADVRSHGFSNLFV 214
+ D F +LF
Sbjct: 79 EKVKFFRPHFTDRAMQKFGHLFP 101
>d1ejea_ b.45.1.2 (A:) FMN-binding protein MTH152 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 192
Score = 27.8 bits (61), Expect = 1.4
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 104 KLKTDVAINVHIQTLSKVQLFQDCDEALLRELVL---KLRPVLYLPGDYICRKGEVGK 158
+L + H V ++E +L ++PVL++ G+ V
Sbjct: 134 ELLRMFEVGDHNLITGSVVSAS-VRSGAVKEGLLDVESVKPVLHVGGNKFVVGDHVRH 190
>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 25.2 bits (55), Expect = 6.9
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 34 DEDEEYHDSDSEKERRERFIQERIRHLAHVFTE 66
DE + + KE FI+ L FTE
Sbjct: 75 DEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE 107
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.4 bits (54), Expect = 9.2
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 217 KDDLNEAIEYYPNAQEVLK--KKARQLIKENAARER 250
+ D + ++ YPN + +Q I+ ARE+
Sbjct: 116 RADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 151
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 25.9 bits (56), Expect = 9.6
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 204 VRSHGFSNLFVLNKDDLNEAIEYYPNAQEVLKKKA----RQLIKENAARERVSQPKLSTM 259
+ FV K D + E Q K+K R +++P +
Sbjct: 158 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI--- 214
Query: 260 DASSVLLDRKGEEPKQAPKLLPIVMQVVPQ 289
LL K P L+ ++ +P
Sbjct: 215 ----FLLSNKNVCHYDFPVLMDKLISDLPI 240
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.364
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,248,517
Number of extensions: 56270
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 21
Length of query: 361
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,226,816
Effective search space: 337374400
Effective search space used: 337374400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)