Query psy9026
Match_columns 81
No_of_seqs 102 out of 163
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 17:07:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0693|consensus 100.0 3.4E-35 7.3E-40 238.8 5.0 68 14-81 41-108 (512)
2 PLN02438 inositol-3-phosphate 100.0 4.5E-32 9.8E-37 222.2 3.5 69 13-81 41-109 (510)
3 PF07994 NAD_binding_5: Myo-in 99.1 7E-12 1.5E-16 96.6 -2.5 31 34-64 1-31 (295)
4 COG1260 INO1 Myo-inositol-1-ph 89.6 0.12 2.6E-06 42.3 0.4 43 31-75 3-45 (362)
5 PHA00202 DNA replication initi 59.0 5.8 0.00013 32.8 1.5 17 34-50 142-158 (388)
6 PF13469 Sulfotransfer_3: Sulf 42.3 11 0.00023 23.9 0.5 26 36-62 3-28 (215)
7 PRK13681 hypothetical protein; 40.1 15 0.00032 21.4 0.8 7 35-41 22-28 (35)
8 COG0756 Dut dUTPase [Nucleotid 32.4 32 0.0007 25.1 1.7 25 54-78 70-94 (148)
9 cd01222 PH_clg Clg (common-sit 31.7 90 0.002 20.6 3.7 33 6-38 19-53 (97)
10 PF13285 DUF4073: Domain of un 28.9 88 0.0019 23.4 3.5 31 4-36 51-81 (158)
11 PF02531 PsaD: PsaD; InterPro 27.8 31 0.00067 25.3 1.0 27 41-67 12-38 (139)
12 PF01555 N6_N4_Mtase: DNA meth 26.2 16 0.00035 24.3 -0.7 28 36-64 194-221 (231)
13 PF13542 HTH_Tnp_ISL3: Helix-t 25.8 13 0.00028 20.6 -1.0 12 53-64 32-43 (52)
14 TIGR02173 cyt_kin_arch cytidyl 24.8 26 0.00056 22.8 0.1 28 37-64 1-30 (171)
15 PHA02146 hypothetical protein 24.8 36 0.00077 23.1 0.8 10 70-79 76-85 (86)
16 PTZ00143 deoxyuridine 5'-triph 21.4 3.2E+02 0.0068 19.6 5.7 35 33-78 67-101 (155)
17 PRK15216 putative fimbrial bio 21.0 95 0.0021 25.7 2.6 34 35-75 69-102 (340)
18 CHL00145 psaD photosystem I su 20.8 44 0.00095 24.5 0.7 26 41-66 12-37 (139)
19 PF09769 ApoO: Apolipoprotein 20.6 52 0.0011 22.7 1.0 23 31-60 94-116 (158)
No 1
>KOG0693|consensus
Probab=100.00 E-value=3.4e-35 Score=238.84 Aligned_cols=68 Identities=38% Similarity=0.772 Sum_probs=67.2
Q ss_pred ceeeeeeeEEEEEecceecceEEEEEEeecCcccceeeeehhccccceeecCCCccCCCccEEEEeeC
Q psy9026 14 PNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPVTYIKTS 81 (81)
Q Consensus 14 ~~v~P~~~~y~fkt~rkvpKlGvMLVG~GGNNGsTltA~ilANk~~lsW~TK~G~q~aNY~GSltqsS 81 (81)
+.|+|++++|.|||+++|||+||||||||||||||++|+++|||++|+|+||+|+|+||||||+||||
T Consensus 41 ~~V~P~~~~y~fkt~~~vpklGvmLvG~GGNNGSTlta~v~ANr~~~~w~tkegv~qaNyfGSlTQas 108 (512)
T KOG0693|consen 41 LDVTPKTVDYDFKTDLKVPKLGVMLVGWGGNNGSTLTASVIANREGISWATKEGVQQANYFGSLTQAS 108 (512)
T ss_pred eEeccceEEEEEeecccCCcceEEEEEecCCCcceeehhhhhccccccccccccccccccceeeeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02438 inositol-3-phosphate synthase
Probab=99.97 E-value=4.5e-32 Score=222.24 Aligned_cols=69 Identities=43% Similarity=0.791 Sum_probs=67.2
Q ss_pred cceeeeeeeEEEEEecceecceEEEEEEeecCcccceeeeehhccccceeecCCCccCCCccEEEEeeC
Q psy9026 13 SPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPVTYIKTS 81 (81)
Q Consensus 13 ~~~v~P~~~~y~fkt~rkvpKlGvMLVG~GGNNGsTltA~ilANk~~lsW~TK~G~q~aNY~GSltqsS 81 (81)
.+.|+|.+++|+|||+|||||+||||||||||||||++||++|||++|+|+||+|+|+|||||||||+|
T Consensus 41 ~~~~~p~~~~~~f~~~~~~~k~Gv~LVG~gGn~~TT~~aG~~A~r~gl~~~tk~g~~~~n~~Gsvtq~s 109 (510)
T PLN02438 41 QWVVKPKTVKYEFKTDRRVPKLGVMLVGWGGNNGSTLTAGVIANKEGISWATKDGVQKANYFGSLTQAS 109 (510)
T ss_pred cEEEEEeeEEEEEEeccccCceEEEEecCCchHHHHHHHHHHHHHcCCCcccccccccCCCcceEEeee
Confidence 368999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.07 E-value=7e-12 Score=96.64 Aligned_cols=31 Identities=45% Similarity=0.819 Sum_probs=30.4
Q ss_pred eEEEEEEeecCcccceeeeehhccccceeec
Q psy9026 34 VGVMLIGWGGNNGSTVTGAILANKHNLCWQS 64 (81)
Q Consensus 34 lGvMLVG~GGNNGsTltA~ilANk~~lsW~T 64 (81)
+||||||||||++||+++|++|+|++++|.+
T Consensus 1 igV~lvG~~GnvaTt~v~Gi~a~k~g~~~~~ 31 (295)
T PF07994_consen 1 IGVALVGAGGNVATTLVAGIEANKRGLAWPT 31 (295)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHHTTSSCCT
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999
No 4
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=89.63 E-value=0.12 Score=42.27 Aligned_cols=43 Identities=23% Similarity=0.123 Sum_probs=37.4
Q ss_pred ecceEEEEEEeecCcccceeeeehhccccceeecCCCccCCCccE
Q psy9026 31 VSKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPV 75 (81)
Q Consensus 31 vpKlGvMLVG~GGNNGsTltA~ilANk~~lsW~TK~G~q~aNY~G 75 (81)
.-+++|+++|.|..++| |.++|..+| .-...+..|+.+++++|
T Consensus 3 ~~~vrv~iiG~Gn~Ass-Lvqgie~~k-~~e~~~~~g~~~~~~~~ 45 (362)
T COG1260 3 TTMVRVAIIGVGNCASS-LVQGIEYYK-AGEDEPVPGLMHRDEGG 45 (362)
T ss_pred cceEEEEEEeccchHHH-HHHHHHHHh-ccCCCccceeccccccC
Confidence 35789999999988888 999999999 66778888999998876
No 5
>PHA00202 DNA replication initiation protein
Probab=58.97 E-value=5.8 Score=32.82 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=13.2
Q ss_pred eEEEEEEeecCccccee
Q psy9026 34 VGVMLIGWGGNNGSTVT 50 (81)
Q Consensus 34 lGvMLVG~GGNNGsTlt 50 (81)
+-+=+|||||||+|.+.
T Consensus 142 v~~G~V~~GG~n~tVlI 158 (388)
T PHA00202 142 VECGLVGIGGNNDTVFF 158 (388)
T ss_pred EEEEEEEEecCCCEEEE
Confidence 33568999999997664
No 6
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=42.25 E-value=11 Score=23.89 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=17.6
Q ss_pred EEEEEeecCcccceeeeehhcccccee
Q psy9026 36 VMLIGWGGNNGSTVTGAILANKHNLCW 62 (81)
Q Consensus 36 vMLVG~GGNNGsTltA~ilANk~~lsW 62 (81)
|.++|.+ -.|||+++..|.+.|.-.|
T Consensus 3 vfI~G~~-RSGTTlL~~~Ll~~~~~~~ 28 (215)
T PF13469_consen 3 VFIVGMP-RSGTTLLSRRLLSQHPQIW 28 (215)
T ss_dssp EEEECST-TSSHHHHH-HHHCTSTTEE
T ss_pred EEEECCC-CCcHHHHHHHHHccCCCee
Confidence 5678887 7799999955555554443
No 7
>PRK13681 hypothetical protein; Provisional
Probab=40.10 E-value=15 Score=21.39 Aligned_cols=7 Identities=71% Similarity=1.341 Sum_probs=6.1
Q ss_pred EEEEEEe
Q psy9026 35 GVMLIGW 41 (81)
Q Consensus 35 GvMLVG~ 41 (81)
||||+|+
T Consensus 22 GvmLaGy 28 (35)
T PRK13681 22 GVMLAGY 28 (35)
T ss_pred ceeeeee
Confidence 7999986
No 8
>COG0756 Dut dUTPase [Nucleotide transport and metabolism]
Probab=32.43 E-value=32 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.0
Q ss_pred hhccccceeecCCCccCCCccEEEE
Q psy9026 54 LANKHNLCWQSKDGLKKPNCPVTYI 78 (81)
Q Consensus 54 lANk~~lsW~TK~G~q~aNY~GSlt 78 (81)
||-||+|+=-+--|+-++.|+|-|-
T Consensus 70 la~k~Gi~~~Ns~G~IDsDYrGei~ 94 (148)
T COG0756 70 LALKHGITLGNSPGTIDSDYRGEIK 94 (148)
T ss_pred CceeceEEEecCCceECCCCCceEE
Confidence 7789999988889999999999763
No 9
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.70 E-value=90 Score=20.61 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=25.1
Q ss_pred ceEEEEecc--eeeeeeeEEEEEecceecceEEEE
Q psy9026 6 NLNVLVESP--NCKPTSSVLNIRTQRKVSKVGVML 38 (81)
Q Consensus 6 ~~~~~~~~~--~v~P~~~~y~fkt~rkvpKlGvML 38 (81)
--+|||+.. ..+|....|.||+.-.+..+++.-
T Consensus 19 R~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e 53 (97)
T cd01222 19 RLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVE 53 (97)
T ss_pred eEEEEecccEEEEEecCCeeEEEEEEEecceEEec
Confidence 457889865 468899999999988777765543
No 10
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=28.94 E-value=88 Score=23.37 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=25.0
Q ss_pred ccceEEEEecceeeeeeeEEEEEecceecceEE
Q psy9026 4 SQNLNVLVESPNCKPTSSVLNIRTQRKVSKVGV 36 (81)
Q Consensus 4 ~~~~~~~~~~~~v~P~~~~y~fkt~rkvpKlGv 36 (81)
+|||.|.+..-.|.- +.|.|++++-++++.|
T Consensus 51 ~qGL~V~vy~drV~v--~A~Df~~~~~IkklsI 81 (158)
T PF13285_consen 51 KQGLQVEVYGDRVVV--EARDFKRGKWIKKLSI 81 (158)
T ss_pred ccceEEEEeCCeEEE--EEEeccCCcchheeee
Confidence 499999998877655 5688899998888865
No 11
>PF02531 PsaD: PsaD; InterPro: IPR003685 PsaD is a small, extrinsic polypeptide located on the stromal side (cytoplasmic side in cyanobacteria) of the photosystem I reaction centre complex. It is required for native assembly of PSI reaction clusters and is implicated in the electrostatic binding of ferredoxin within the reaction centre []. PsaD forms a dimer in solution which is bound by PsaE however PsaD is monomeric in its native complexed PSI environment [].; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_D 2O01_D 2WSC_D 2WSE_D 1JB0_D 3PCQ_D.
Probab=27.79 E-value=31 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=20.0
Q ss_pred eecCcccceeeeehhccccceeecCCC
Q psy9026 41 WGGNNGSTVTGAILANKHNLCWQSKDG 67 (81)
Q Consensus 41 ~GGNNGsTltA~ilANk~~lsW~TK~G 67 (81)
+||+.|-=|.+|-...|+-|+|.++..
T Consensus 12 FgGSTGGlL~~Ae~EEkYaITWts~ke 38 (139)
T PF02531_consen 12 FGGSTGGLLRSAETEEKYAITWTSPKE 38 (139)
T ss_dssp ---BTTSC-TCCCCT-EEEEEEEESSS
T ss_pred ccccchhhhhccccceeEEEEecCCcc
Confidence 589999999999999999999998753
No 12
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=26.18 E-value=16 Score=24.33 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=18.8
Q ss_pred EEEEEeecCcccceeeeehhccccceeec
Q psy9026 36 VMLIGWGGNNGSTVTGAILANKHNLCWQS 64 (81)
Q Consensus 36 vMLVG~GGNNGsTltA~ilANk~~lsW~T 64 (81)
+.|==++| .|||+.||+.-||+-|-.+-
T Consensus 194 iVlDpF~G-SGTT~~aa~~l~R~~ig~E~ 221 (231)
T PF01555_consen 194 IVLDPFAG-SGTTAVAAEELGRRYIGIEI 221 (231)
T ss_dssp EEEETT-T-TTHHHHHHHHTT-EEEEEES
T ss_pred eeehhhhc-cChHHHHHHHcCCeEEEEeC
Confidence 44444555 59999999999998765543
No 13
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=25.85 E-value=13 Score=20.61 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=9.9
Q ss_pred ehhccccceeec
Q psy9026 53 ILANKHNLCWQS 64 (81)
Q Consensus 53 ilANk~~lsW~T 64 (81)
-+|..++++|.|
T Consensus 32 ~vA~~~~vs~~T 43 (52)
T PF13542_consen 32 DVARELGVSWST 43 (52)
T ss_pred HHHHHHCCCHHH
Confidence 478889999987
No 14
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=24.83 E-value=26 Score=22.76 Aligned_cols=28 Identities=43% Similarity=0.467 Sum_probs=16.7
Q ss_pred EEEEeecCccc--ceeeeehhccccceeec
Q psy9026 37 MLIGWGGNNGS--TVTGAILANKHNLCWQS 64 (81)
Q Consensus 37 MLVG~GGNNGs--TltA~ilANk~~lsW~T 64 (81)
|+|++.|..|| |-.|-.||++.++.+-.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44555555544 44566678888776544
No 15
>PHA02146 hypothetical protein
Probab=24.82 E-value=36 Score=23.05 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=7.5
Q ss_pred CCCccEEEEe
Q psy9026 70 KPNCPVTYIK 79 (81)
Q Consensus 70 ~aNY~GSltq 79 (81)
+|.|-|||-|
T Consensus 76 ~adysg~ie~ 85 (86)
T PHA02146 76 KADYTGSIEE 85 (86)
T ss_pred cccccccccc
Confidence 6778888766
No 16
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=21.38 E-value=3.2e+02 Score=19.58 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=26.0
Q ss_pred ceEEEEEEeecCcccceeeeehhccccceeecCCCccCCCccEEEE
Q psy9026 33 KVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPVTYI 78 (81)
Q Consensus 33 KlGvMLVG~GGNNGsTltA~ilANk~~lsW~TK~G~q~aNY~GSlt 78 (81)
....+|.+-.|. | |++|.|....|+-+|.|.|-+.
T Consensus 67 g~~~~i~~RSsl----------a-~~gl~l~n~~GvID~gYrGei~ 101 (155)
T PTZ00143 67 NVSWLLFPRSSI----------S-KTPLRLANSIGLIDAGYRGELI 101 (155)
T ss_pred CEEEEEEccCcc----------c-ccCeEecccCCeECCCCCccEE
Confidence 344556655543 4 6799999889999999999764
No 17
>PRK15216 putative fimbrial biosynthesis regulatory protein; Provisional
Probab=20.96 E-value=95 Score=25.69 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=22.2
Q ss_pred EEEEEEeecCcccceeeeehhccccceeecCCCccCCCccE
Q psy9026 35 GVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPV 75 (81)
Q Consensus 35 GvMLVG~GGNNGsTltA~ilANk~~lsW~TK~G~q~aNY~G 75 (81)
-=.+||+|.|+.--| |..+.|..+.-..--|--|
T Consensus 69 sd~ivg~~~~d~vkl-------kl~~~w~~~~~i~~~n~~~ 102 (340)
T PRK15216 69 SDHIIGMGPNDSVKL-------KLKVEWQSSSAINMRNQNG 102 (340)
T ss_pred cceEEeeCCCCeEEE-------EEEEEEecCCceEeecCCC
Confidence 457999999998655 6667776655444333333
No 18
>CHL00145 psaD photosystem I subunit II; Validated
Probab=20.79 E-value=44 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.6
Q ss_pred eecCcccceeeeehhccccceeecCC
Q psy9026 41 WGGNNGSTVTGAILANKHNLCWQSKD 66 (81)
Q Consensus 41 ~GGNNGsTltA~ilANk~~lsW~TK~ 66 (81)
+||..|-=|.+|-.-.|.-|+|.++.
T Consensus 12 fgGSTGGlL~~Ae~EEkYaITWtS~k 37 (139)
T CHL00145 12 FGGSTGGWLRAAEVEEKYAITWTSPK 37 (139)
T ss_pred ccccchhhhhcccceeeEEEEecCCc
Confidence 58999999999999999999999864
No 19
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=20.59 E-value=52 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=16.1
Q ss_pred ecceEEEEEEeecCcccceeeeehhccccc
Q psy9026 31 VSKVGVMLIGWGGNNGSTVTGAILANKHNL 60 (81)
Q Consensus 31 vpKlGvMLVG~GGNNGsTltA~ilANk~~l 60 (81)
.|++|+++|| .|++.|||.|.++
T Consensus 94 lP~~~~I~va-------glaGsIlar~r~~ 116 (158)
T PF09769_consen 94 LPGLGYIGVA-------GLAGSILARRRGI 116 (158)
T ss_pred Ccceeeeehh-------hhheeeeeccCcc
Confidence 6777776663 4677888877664
Done!