RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9026
(81 letters)
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD; 2.30A {Caenorhabditis
elegans} SCOP: c.2.1.3 d.81.1.3
Length = 537
Score = 84.9 bits (209), Expect = 2e-21
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 15 NCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPN 72
+ P + +T K K G++L+G GGNNGST G+I AN++ + W++K+G + N
Sbjct: 58 HVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQAN 115
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 83.7 bits (206), Expect = 7e-21
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 15 NCKPTSSVLNIRTQRKV-SKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNC 73
+ PT + K K+G+MLIG GGNNGST+ ++LANKHN+ +Q+K+G+K+PN
Sbjct: 46 DVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNY 105
Query: 74 PVTYIKTS 81
+ + S
Sbjct: 106 FGSMTQCS 113
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding
rossmann fold, L-MYO-inositol 1-phosphate syntha
isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus}
PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Length = 392
Score = 56.7 bits (136), Expect = 2e-11
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 34 VGVMLIGWGGNNGSTVTGAILANKHNLCW 62
+ V L+G G +T A + +
Sbjct: 1 MKVWLVGAYGIVSTTAMVGARAIERGIAP 29
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 36.3 bits (83), Expect = 3e-04
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 27 TQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNL 60
V V+++G G ST + +
Sbjct: 7 HHHHHHMVKVLILG-QGYVASTFVAGLEKLRKGE 39
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 0.037
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 6 NLNVLVESPNCKPTSSVLNIRTQRKVSKVGVMLI---GWGGNNGSTV 49
N N + VL K V + I G+G G +
Sbjct: 1409 NRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAI 1455
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 26.4 bits (58), Expect = 1.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 32 SKVGVMLIGWGGNNGSTVTGAILANKHN 59
+++ G G G + A L+ H
Sbjct: 3 HMEKIIIYGGTGYIGKFMVRASLSFSHP 30
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 26.0 bits (57), Expect = 1.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 36 VMLIGWGGNNGSTVTGAILANKHN 59
V+++G G G + A ++ H
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHP 30
>2igs_A Hypothetical protein; helix-bundles, alpha-beta, structural
genomics, PSI-2, prote structure initiative; 2.17A
{Pseudomonas aeruginosa} SCOP: d.2.1.11
Length = 219
Score = 25.5 bits (55), Expect = 1.8
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 7 LNVLVESPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILA 55
L+ SPN PT + +S+ +L+ +G N + G A
Sbjct: 118 LDRFKGSPNVYPTDVGFSTDASGGISQESGLLVSYGVNLRTLTPGTWQA 166
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 25.6 bits (56), Expect = 2.1
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 32 SKVGVMLIGWGGNNGSTVTGAILANKH 58
++ ++++G G G + A + +
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGN 27
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 25.3 bits (56), Expect = 2.4
Identities = 3/21 (14%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 57 KHNLCWQSKDGLKKPNCPVTY 77
H+L + + + V
Sbjct: 555 CHSLYLPESESMTRR--SVNM 573
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion
protein, chimera protein, fusion inhibitor, antivirus
viral protein; HET: CIT; 1.80A {Hendravirus}
Length = 80
Score = 24.0 bits (51), Expect = 4.7
Identities = 18/72 (25%), Positives = 29/72 (40%)
Query: 1 MKNSQNLNVLVESPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNL 60
MKN+ N+N L S + V T K V L + G +G L +
Sbjct: 2 MKNADNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSD 61
Query: 61 CWQSKDGLKKPN 72
+SK+ +++ N
Sbjct: 62 LEESKEWIRRSN 73
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single
cryo-EM, high resolution, late protein, VIR virus; 4.20A
{Bovine papillomavirus type 1}
Length = 495
Score = 23.6 bits (51), Expect = 9.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 18 PTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHN 59
P +V N +R V V + + G G TVTG N
Sbjct: 82 PDRTVHNPSKERLVWAVIGVQVSRGQPLGGTVTGHPTFNALL 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.128 0.391
Gapped
Lambda K H
0.267 0.0488 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,062,513
Number of extensions: 48249
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 12
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.0 bits)