RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9026
         (81 letters)



>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
          synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 92.6 bits (230), Expect = 9e-25
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 16 CKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPN 72
            P     + +T  K  K G++L+G GGNNGST  G+I AN++ + W++K+G  + N
Sbjct: 37 VTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQAN 93


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
          synthase {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 410

 Score = 86.8 bits (215), Expect = 1e-22
 Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 16 CKPTSSVLNIRTQRKV-SKVGVMLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPN 72
            PT      +   K   K+G+MLIG GGNNGST+  ++LANKHN+ +Q+K+G+K+PN
Sbjct: 39 VTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPN 96


>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
          synthase {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 287

 Score = 49.9 bits (119), Expect = 1e-09
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 34 VGVMLIGWGGNNGSTVTGAILANKHNLCW 62
          + V L+G  G   +T      A +  +  
Sbjct: 1  MKVWLVGAYGIVSTTAMVGARAIERGIAP 29


>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
          {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 29.6 bits (66), Expect = 0.029
 Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 34 VGVMLIGWGGNNGSTVTGAILANKHNL 60
          V V+++G  G   ST    +   +   
Sbjct: 3  VKVLILGQ-GYVASTFVAGLEKLRKGE 28


>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 23.9 bits (51), Expect = 3.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 7   LNVLVESPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILA 55
           L+    SPN  PT    +      +S+   +L+ +G N  +   G   A
Sbjct: 113 LDRFKGSPNVYPTDVGFSTDASGGISQESGLLVSYGVNLRTLTPGTWQA 161


>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
           cress (Arabidopsis thaliana), mitochondrial isoform
           [TaxId: 3702]}
          Length = 161

 Score = 23.5 bits (50), Expect = 3.7
 Identities = 9/41 (21%), Positives = 13/41 (31%)

Query: 13  SPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAI 53
            P        L    +  V        G+GG N S +  +I
Sbjct: 121 DPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFASI 161


>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
           beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
           [TaxId: 1902]}
          Length = 194

 Score = 23.4 bits (49), Expect = 4.2
 Identities = 8/44 (18%), Positives = 10/44 (22%), Gaps = 1/44 (2%)

Query: 6   NLNVLVESPNCKPTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTV 49
              V            VL            V+  G  G N + V
Sbjct: 148 TAGVTSVPREY-GIDLVLGEPRSTAPRTALVLARGRWGFNSAAV 190


>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa
           acuminata), 1,3-beta-glucanase [TaxId: 4641]}
          Length = 312

 Score = 23.4 bits (50), Expect = 4.8
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 33  KVGVMLIGW---GGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPV-TYI 78
            V V   GW   GG   ++ + A   N++ +        ++P   +  YI
Sbjct: 231 AVVVSESGWPSAGGGAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYI 280


>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum
           vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]}
          Length = 306

 Score = 23.0 bits (49), Expect = 5.0
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 40  GWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNCPVTYI 78
             GG   +T   A   N+H +    +   + P    TYI
Sbjct: 236 PSGGGTAATPANARFYNQHLINHVGRGTPRHPGAIETYI 274


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 22.3 bits (48), Expect = 9.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 18  PTSSVLNIRTQRKVSKVGVMLIGWGGNNGSTVTGAILANK 57
           P +S  N  TQR V     + +G G   G  ++G  L NK
Sbjct: 67  PDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNK 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.128    0.391 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,057
Number of extensions: 9578
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)