BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9027
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/469 (53%), Positives = 328/469 (69%), Gaps = 67/469 (14%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
MLIG GGNNGST+ ++LANKHN+ +Q+K+G+K+PN++GS+TQ ST++LG+D+ G DVY
Sbjct: 69 MLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYA 128
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P NSLLPMV P+D V+ GWDI++ +L +AM+RS+VL+++LQ +L+ M +KP PSIY+P
Sbjct: 129 PFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYP 188
Query: 121 EFIAANQAGRADN---------VLSGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTE 171
+FIAANQ RA+N V + K L ++RRDI++FK++N+LD+V
Sbjct: 189 DFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKV--------- 239
Query: 172 RFSDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLE 231
IVLWTANTER+ ++ G+NDT ENLL+
Sbjct: 240 ---------------------------------IVLWTANTERYVEVSPGVNDTMENLLQ 266
Query: 232 SIQKNAAEVSPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQT 282
SI+ + E++PSTIFA ASILEG NTFVPG + LAE + FIAGDD KSGQT
Sbjct: 267 SIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQT 326
Query: 283 KVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSI 342
K+KSVL FLV AGIKPVSI SYNHLGNNDGYNLSAP+QFRSKEISKS+V+DD++ASN I
Sbjct: 327 KLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDI 386
Query: 343 LY--RPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLI 400
LY + G+K DH +VIKY+ VGDSK A+DEY SE++LGGHN IS+HN CEDSLLA+PLI
Sbjct: 387 LYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLI 446
Query: 401 LDLIILAELSSRIQF-----TSPTVAEYTYFHPVLSILSYLCKAPLVPP 444
+DL+++ E +R+ + ++ F+PVL+ LSY KAPL P
Sbjct: 447 IDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRP 495
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 458 bits (1178), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/459 (51%), Positives = 311/459 (67%), Gaps = 67/459 (14%)
Query: 11 STVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYVPMNSLLPMVD 70
ST+ ++LANKHN+ +Q+K+G+K+PN++GS TQ ST++LG+D+ G DVY P NSLLP V
Sbjct: 79 STLVASVLANKHNVEFQTKEGVKQPNYFGSXTQCSTLKLGIDAEGNDVYAPFNSLLPXVS 138
Query: 71 PDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAGR 130
P+D V+ GWDI++ +L +A +RS+VL+++LQ +L+ +KP PSIY+P+FIAANQ R
Sbjct: 139 PNDFVVSGWDINNADLYEAXQRSQVLEYDLQQRLKAKXSLVKPLPSIYYPDFIAANQDER 198
Query: 131 ADN---------VLSGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQGLN 181
A+N V + K L ++RRDI++FK++N+LD+V
Sbjct: 199 ANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKV------------------- 239
Query: 182 DTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAAEVS 241
IVLWTANTER+ ++ G+NDT ENLL+SI+ + E++
Sbjct: 240 -----------------------IVLWTANTERYVEVSPGVNDTXENLLQSIKNDHEEIA 276
Query: 242 PSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFL 292
PSTIFA ASILEG NTFVPG + LAE + FIAGDD KSGQTK+KSVL FL
Sbjct: 277 PSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQTKLKSVLAQFL 336
Query: 293 VTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILY--RPGEKP 350
V AGIKPVSI SYNHLGNNDGYNLSAP+QFRSKEISKS+V+DD++ASN ILY + G+K
Sbjct: 337 VDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKV 396
Query: 351 DHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELS 410
DH +VIKY VGDSK A DEY SE+ LGGHN IS+HN CEDSLLA+PLI+DL++ E
Sbjct: 397 DHCIVIKYXKPVGDSKVAXDEYYSELXLGGHNRISIHNVCEDSLLATPLIIDLLVXTEFC 456
Query: 411 SRIQF-----TSPTVAEYTYFHPVLSILSYLCKAPLVPP 444
+R+ + ++ F+PVL+ LSY KAPL P
Sbjct: 457 TRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRP 495
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/449 (53%), Positives = 308/449 (68%), Gaps = 55/449 (12%)
Query: 11 STVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKD-VYVPMNSLLPMV 69
ST G+I AN++ + W++K+G + N++GS+TQ++TV LG DS+ ++ ++VP ++P++
Sbjct: 90 STAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPIL 149
Query: 70 DPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAG 129
P+D+++ GWDIS NL +AM R+KV + LQ +LRP+ME + P PSIY+P+FIA+NQ
Sbjct: 150 SPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYYPDFIASNQGD 209
Query: 130 RADNVLSG-TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQGLNDTAENLL 188
RA+NV+ G K E L+ +R DIR FKQ++ L+
Sbjct: 210 RANNVIPGDNKLEHLEHIRADIRKFKQEHELE---------------------------- 241
Query: 189 EGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAV 248
C VIVLWTANTER++D+ QGLN TA+ ++ESI+ N EVSPS IFAV
Sbjct: 242 --------C------VIVLWTANTERYTDVRQGLNATADEIMESIRVNEDEVSPSNIFAV 287
Query: 249 ASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKP 299
ASILEG NT VPG I+LAE+ KVF+ GDDFKSGQTK KS VDFLV++G+KP
Sbjct: 288 ASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFVDFLVSSGMKP 347
Query: 300 VSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYV 359
SIVSYNHLGNNDG NLS +QFRSKEISKS+VVDDMV SN IL+ + PD+ VVIKYV
Sbjct: 348 ESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKNPDYCVVIKYV 407
Query: 360 PYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPT 419
PYV DSKRA+DEY I +GG T +HNTCEDSLLASPLI DL IL EL+SR+ +
Sbjct: 408 PYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTELASRVSYK--V 465
Query: 420 VAEYTYFHPVLSILSYLCKAPLVPPETSI 448
EY FH VLSILS L KAP+VPP T I
Sbjct: 466 DDEYKPFHSVLSILSLLLKAPVVPPGTPI 494
>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild Type
pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild- Type With The Intermediate 5-Keto
1-Phospho Glucose
Length = 392
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 24/215 (11%)
Query: 202 DQVIVLWTANTE---RFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEG---- 254
D+ +V+ A+TE +S+ G + E +++ +K A S S ++A A++ G
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYA--SASMLYAYAALKLGLPYA 197
Query: 255 ------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYNHL 308
+ +P +LAEKK V AG+D K+G+T VK+ L ++ V +SYN L
Sbjct: 198 NFTPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNIL 257
Query: 309 GNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRA 368
G+ DG LSA SK +SK V++ M+ G P I+Y P + D+K A
Sbjct: 258 GDYDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTA 308
Query: 369 LDEYTSEILLGGHNTISMHNTCEDSLLASPLILDL 403
D + LG D+++A+PLILD+
Sbjct: 309 FDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K367a
Length = 392
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 24/215 (11%)
Query: 202 DQVIVLWTANTE---RFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEG---- 254
D+ +V+ A+TE +S+ G + E +++ +K A S S ++A A++ G
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYA--SASMLYAYAALKLGLPYA 197
Query: 255 ------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYNHL 308
+ +P +LAEKK V AG+D K+G+T VK+ L ++ V +SYN L
Sbjct: 198 NFTPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNIL 257
Query: 309 GNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRA 368
G+ DG LSA SK +SK V++ M+ G P I+Y P + D+K A
Sbjct: 258 GDYDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTA 308
Query: 369 LDEYTSEILLGGHNTISMHNTCEDSLLASPLILDL 403
D + LG D+++A+PLILD+
Sbjct: 309 FDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QVW|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K278a
Length = 392
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 202 DQVIVLWTANTE---RFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEG---- 254
D+ +V+ A+TE +S+ G + E +++ +K A S S ++A A++ G
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYA--SASMLYAYAALKLGLPYA 197
Query: 255 ------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYNHL 308
+ +P +LAEKK V AG+D K+G+T VK+ L ++ V +SYN L
Sbjct: 198 NFTPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYNIL 257
Query: 309 GNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRA 368
G+ DG LSA SK +S V++ M+ G P I+Y P + D+K A
Sbjct: 258 GDYDGKVLSARDNKESKVLSADKVLEKML---------GYSPYSITEIQYFPSLVDNKTA 308
Query: 369 LDEYTSEILLGGHNTISMHNTCEDSLLASPLILDL 403
D + LG D+++A+PLILD+
Sbjct: 309 FDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
Length = 392
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 202 DQVIVLWTANTE---RFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEG---- 254
D+ +V+ A+TE +S+ G + E +++ +K A S S ++A A++ G
Sbjct: 140 DETVVINVASTEPLPNYSEEYHGSLEGFERMIDEDRKEYA--SASMLYAYAALKLGLPYA 197
Query: 255 ------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYNHL 308
+ +P +LAEKK V AG+D K+G+T VK+ L ++ V +SY L
Sbjct: 198 NFTPSPGSAIPALKELAEKKGVPHAGNDGKTGETLVKTTLAPMFAYRNMEVVGWMSYAIL 257
Query: 309 GNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRA 368
G+ DG LSA SK +SK V++ M+ G P I+Y P + D+K A
Sbjct: 258 GDYDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTA 308
Query: 369 LDEYTSEILLGGHNTISMHNTCEDSLLASPLILDL 403
D + LG D+++A+PLILD+
Sbjct: 309 FDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|1HQM|D Chain D, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1265
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 132 DNVLSGTKQEVLDQVRRDIRDFKQ---------KNSLDQVIVLWTANTERFSDIVQGLND 182
D V+ KQ L++ R +R +Q + DQVI LWT TE+ + V N+
Sbjct: 694 DAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAV--FNN 751
Query: 183 TAEN 186
EN
Sbjct: 752 FEEN 755
>pdb|1I6V|D Chain D, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1264
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 132 DNVLSGTKQEVLDQVRRDIRDFKQ---------KNSLDQVIVLWTANTERFSDIVQGLND 182
D V+ KQ L++ R +R +Q + DQVI LWT TE+ + V N+
Sbjct: 693 DAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAV--FNN 750
Query: 183 TAEN 186
EN
Sbjct: 751 FEEN 754
>pdb|1L9U|D Chain D, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|M Chain M, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|D Chain D, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
pdb|1YNJ|D Chain D, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNJ|J Chain J, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|D Chain D, Taq Rna Polymerase-rifampicin Complex
pdb|1YNN|J Chain J, Taq Rna Polymerase-rifampicin Complex
Length = 1524
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 129 GRADNVLSGTKQEVLDQVRRDIRDFKQ---------KNSLDQVIVLWTANTERFSDIV 177
G D V+ KQ L++ R +R +Q + DQVI LWT TE+ + V
Sbjct: 950 GIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAV 1007
>pdb|2GHO|D Chain D, Recombinant Thermus Aquaticus Rna Polymerase For
Structural Studies
Length = 1233
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 132 DNVLSGTKQEVLDQVRRDIRDFKQ---------KNSLDQVIVLWTANTERFSDIV 177
D V+ KQ L++ R +R +Q + DQVI LWT TE+ + V
Sbjct: 662 DAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAV 716
>pdb|1JLY|A Chain A, Crystal Structure Of Amaranthus Caudatus Agglutinin
pdb|1JLY|B Chain B, Crystal Structure Of Amaranthus Caudatus Agglutinin
Length = 304
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 62 MNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNL 100
MN + D I++DG D N A A+ RS V DFN+
Sbjct: 218 MNKFWRLSTDDWILVDGNDPRETNEAAALFRSDVHDFNV 256
>pdb|1JLX|A Chain A, Agglutinin In Complex With T-Disaccharide
pdb|1JLX|B Chain B, Agglutinin In Complex With T-Disaccharide
Length = 303
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 62 MNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNL 100
MN + D I++DG D N A A+ RS V DFN+
Sbjct: 217 MNKFWRLSTDDWILVDGNDPRETNEAAALFRSDVHDFNV 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,137,650
Number of Sequences: 62578
Number of extensions: 531441
Number of successful extensions: 1473
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 29
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)