RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9027
(448 letters)
>gnl|CDD|178057 PLN02438, PLN02438, inositol-3-phosphate synthase.
Length = 510
Score = 712 bits (1840), Expect = 0.0
Identities = 286/457 (62%), Positives = 346/457 (75%), Gaps = 52/457 (11%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
ML+GWGGNNGST+T ++ANK + W +KDG++K N++GS+TQ+ST+R+G +G+++Y
Sbjct: 65 MLVGWGGNNGSTLTAGVIANKEGISWATKDGVQKANYFGSLTQASTIRVG-SFNGEEIYA 123
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P SLLPMV+P+DIV GWDIS +NLADAMER+KVLD +LQ QLRPYME+M P P IY P
Sbjct: 124 PFKSLLPMVNPNDIVFGGWDISDMNLADAMERAKVLDIDLQKQLRPYMENMVPLPGIYDP 183
Query: 121 EFIAANQAGRADNVLSGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQGL 180
+FIAANQ RA+NV+ GTK+E +DQ+R+DIR+FK+KN +D+V+VLWTANTER+S++V GL
Sbjct: 184 DFIAANQGSRANNVIKGTKKEQMDQIRKDIREFKEKNKVDKVVVLWTANTERYSNVVVGL 243
Query: 181 NDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAAEV 240
NDT ENLL SI+K+ AE+
Sbjct: 244 NDTMENLLA------------------------------------------SIEKDEAEI 261
Query: 241 SPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDF 291
SPST++A+A ILEG NTFVPG I+LA KK I GDDFKSGQTK+KSVLVDF
Sbjct: 262 SPSTLYALACILEGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVDF 321
Query: 292 LVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPD 351
LV AGIKP SIVSYNHLGNNDG NLSAPQ FRSKEISKSNVVDDMVASNSILY PGE PD
Sbjct: 322 LVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVASNSILYEPGEHPD 381
Query: 352 HTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSS 411
H VVIKYVPYVGDSKRA+DEYTSEI +GG NTI MHNTCEDSLLA+P+ILDL++LAELS+
Sbjct: 382 HVVVIKYVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELST 441
Query: 412 RIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPETSI 448
RIQ + ++ FHPV ++LSYL KAPLVPP T +
Sbjct: 442 RIQLKAEGEEKFHSFHPVATLLSYLTKAPLVPPGTPV 478
>gnl|CDD|219688 pfam07994, NAD_binding_5, Myo-inositol-1-phosphate synthase. This
is a family of myo-inositol-1-phosphate synthases.
Inositol-1-phosphate catalyzes the conversion of
glucose-6- phosphate to inositol-1-phosphate, which is
then dephosphorylated to inositol. Inositol phosphates
play an important role in signal transduction.
Length = 389
Score = 486 bits (1252), Expect = e-171
Identities = 213/462 (46%), Positives = 264/462 (57%), Gaps = 102/462 (22%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
L+G GGNN ST+ I ANK L W GS+TQ STVRLG
Sbjct: 4 ALVGVGGNNASTLVAGIEANKKGLSWP----------TGSVTQLSTVRLG---------- 43
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
SL+P V PD V+ GWDI + + +A+ + VLD NLQ +L+P +E
Sbjct: 44 ---SLVPYVVPDIEVVGGWDIDARKVGEALSEAIVLDPNLQEKLKPDLEKD--------- 91
Query: 121 EFIAANQAGRADNVL----SGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDI 176
FIA NQ R D V+ +GTK E ++ +R DI DFK++N LD+V+VL TA TER++ +
Sbjct: 92 -FIAVNQGIRLDGVIPHLETGTKWEEVEAIREDIVDFKKENGLDKVVVLNTAPTERYAPV 150
Query: 177 VQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKN 236
+ G+NDTAENLL+ +I+ N
Sbjct: 151 IPGVNDTAENLLK------------------------------------------AIKNN 168
Query: 237 AAEVSPSTIFAVASILEG---------NTF-VPGAIDLAEKKKVFIAGDDFKSGQTKVKS 286
E S ST++A A++L G NT VPG I+LAE+K + IAGDDFKSGQTK KS
Sbjct: 169 HEEESASTLYAYAALLAGCAFINGSPQNTASVPGLIELAEEKGLPIAGDDFKSGQTKTKS 228
Query: 287 VLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRP 346
VL FL+ G SI SYNHLGN DG NLSAP+QFRSKE SKS VVDD SN + Y
Sbjct: 229 VLALFLLFRGRGVKSIASYNHLGNGDGDNLSAPEQFRSKEKSKSKVVDD--VSNVLDYLL 286
Query: 347 GEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIIL 406
G+KPDH V IKYVPY+GDSK A+DEY SEI LGG NTI +HNTCEDSLLA+PLI+DL+ L
Sbjct: 287 GDKPDHIVPIKYVPYLGDSKVAMDEYESEIFLGGPNTIELHNTCEDSLLAAPLIIDLVRL 346
Query: 407 AELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPETSI 448
A+L+ R VLS+LSY KAPL P +
Sbjct: 347 AKLALRRG-----------IGGVLSVLSYFMKAPLPPQVNDL 377
>gnl|CDD|224180 COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid
metabolism].
Length = 362
Score = 177 bits (451), Expect = 1e-51
Identities = 71/253 (28%), Positives = 104/253 (41%), Gaps = 43/253 (16%)
Query: 202 DQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEG------- 254
D V+VL A TE N L S S +A A++ G
Sbjct: 123 DVVVVLNVAKTEVL-----------VNYLPV-----GSESASYFYAAAALAAGVAFVNAI 166
Query: 255 ---NTFVPGAIDLAEKKKVFIAGDDFKS--GQTKVKSVLVDFLVTAGIKPVSIVSYNHLG 309
P ++L E+K + IAGDD KS G T + VL G+K N G
Sbjct: 167 PVFIASDPAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGG 226
Query: 310 NNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRAL 369
N D NL A ++ SK+ISK++ V ++ Y+ G+KP H YV +GD K A
Sbjct: 227 NTDFLNLLARERLESKKISKTSAVTSILG-----YKLGDKPIHIGPSDYVEPLGDRKVAY 281
Query: 370 DEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPV 429
++ G + + EDS ++ LI+DL+ LA+L+ + PV
Sbjct: 282 MRIEGKLFGGVPMNLEIKLEVEDSPNSAGLIIDLVRLAKLA----------LDRGIGGPV 331
Query: 430 LSILSYLCKAPLV 442
+ +Y K P
Sbjct: 332 YEVSAYFMKNPPT 344
>gnl|CDD|145021 pfam01658, Inos-1-P_synth, Myo-inositol-1-phosphate synthase. This
is a family of myo-inositol-1-phosphate synthases.
Inositol-1-phosphate catalyzes the conversion of
glucose-6- phosphate to inositol-1-phosphate, which is
then dephosphorylated to inositol. Inositol phosphates
play an important role in signal transduction.
Length = 108
Score = 168 bits (427), Expect = 3e-51
Identities = 58/114 (50%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 280 GQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVAS 339
GQT +KSVL FL G+K +S YN LGN DG NL P++F+SKEISKS+VVDD++
Sbjct: 1 GQTILKSVLAPFLKDRGLKVLSWYQYNILGNTDGLNLLEPERFKSKEISKSSVVDDILGY 60
Query: 340 NSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDS 393
N + PDH I YVP +GD K A DE E LGG TI ++ CEDS
Sbjct: 61 N------YDVPDHIGPIDYVPPLGDRKVAWDEIEGEGFLGGPMTIELNLLCEDS 108
>gnl|CDD|132491 TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase,
Actinobacterial type. This enzyme, inositol 1-phosphate
synthase as found in Actinobacteria, produces an
essential precursor for several different products,
including mycothiol, which is a glutathione analog, and
phosphatidylinositol, which is a phospholipid.
Length = 351
Score = 37.6 bits (87), Expect = 0.009
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 27/213 (12%)
Query: 169 NTERFSDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAEN 228
NT + +D+ T + G ++ + + +Y I + D+VQ L D +
Sbjct: 74 NTIKIADVPP----TGVTVQRGPTLDGLGK-YYRDTI---EESDAEPVDVVQALKDAKVD 125
Query: 229 LLESIQKNAAEVSPSTIFAVASILEGNTFV-------PGAIDLAEK---KKVFIAGDDFK 278
+L S +E +A +I G FV + A+K V I GDD K
Sbjct: 126 VLVSYLPVGSE-EADKFYAQCAIDAGVAFVNALPVFIASDPEWAKKFTDAGVPIVGDDIK 184
Query: 279 S--GQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDM 336
S G T VL G++ + N GN D N+ + SK+ISK+ V
Sbjct: 185 SQVGATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDFKNMLERDRLESKKISKTQAV--- 241
Query: 337 VASNSILYRP-GEKPDHTVVIKYVPYVGDSKRA 368
++++ RP +K H +V ++ D K A
Sbjct: 242 --TSNLPDRPLKDKNVHIGPSDHVGWLDDRKWA 272
>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family. This
glutaredoxin-like protein family contains the conserved
CxxC motif and includes the Clostridium pasteurianum
protein YruB which has been cloned from a rubredoxin
operon. Somewhat related to NrdH, it is unknown whether
this protein actually interacts with
glutathione/glutathione reducatase, or, like NrdH, some
other reductant system.
Length = 74
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 318 APQQFRSKEIS--KSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEY 372
A + SK I+ + +V D A +L G++ +VI + VG LD+
Sbjct: 16 AKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQL 72
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 31.4 bits (72), Expect = 1.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDG 78
M +G V + LLP+++ DI++DG
Sbjct: 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDG 101
>gnl|CDD|226712 COG4261, COG4261, Predicted acyltransferase [General function
prediction only].
Length = 309
Score = 30.5 bits (69), Expect = 1.5
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 205 IVLWTANTERFSDIVQGLN-DTAENLLESIQKNAAEVSPSTIFAVASILEGNTFV 258
V+++ N RF+ I+ +N + A NL+ ++ P+T + L+ V
Sbjct: 144 AVVYSENARRFNQILAAMNPEAAINLIP-----VGDIGPATAILLKEALDAGEMV 193
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 30.2 bits (69), Expect = 2.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 222 LNDTAENLLESIQKNAAEVSPSTIFAVASILEGNTFVPGAIDLAEKKKVFIAGDDFKS 279
L+D A ++ + SP+++ + L+G V D E+ KV +A +S
Sbjct: 117 LSDLARAYMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPES 174
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 30.1 bits (68), Expect = 2.8
Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 46/162 (28%)
Query: 74 IVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRADN 133
IV +G DI++V DA ++L + R + QA R+
Sbjct: 140 IVAEGRDITTVVAPDA--EVRIL--------------LTAREEV--------RQARRSGQ 175
Query: 134 VLSGTKQEVLDQV-RRDIRDFKQKNSL---DQVIVLWTANTERFSDIVQGLNDTAENLLE 189
S T VL+ V RD D K + L D V L ++ + F + + L E+ +E
Sbjct: 176 DRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLD-FDETLDLLIGLVEDAIE 234
Query: 190 GVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLE 231
YDQ + AN E + L++ E+LLE
Sbjct: 235 EQE--------YDQ----YAANLEGYE-----LDEGDEDLLE 259
>gnl|CDD|225052 COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene
tetrahydromethanopterin reductase and related
flavin-dependent oxidoreductases [Energy production and
conversion].
Length = 336
Score = 29.8 bits (67), Expect = 3.1
Identities = 24/173 (13%), Positives = 47/173 (27%), Gaps = 24/173 (13%)
Query: 10 GSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSST----VRLGMDSSGKDVYVPMNSL 65
GS+ GA LA + + + S + + VR ++G+D +
Sbjct: 170 GSSPAGAELAARLADGYFT--------AGLSPEEVAEKIEAVRAAAAAAGRDPDRVRVGV 221
Query: 66 LPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAA 125
V D + A+ + + P +
Sbjct: 222 GVHVIVADTEEEARA-----AAEELIAKLDDLALGAFLGDGGDLNAAPDLLAALLGLVPE 276
Query: 126 NQAGRADNVLSGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQ 178
L GT +EV +++ D +++ E D V+
Sbjct: 277 --GLGRGTALVGTPEEVAERIEELAAAGG-----DGFLLVGPPFLEELEDFVE 322
>gnl|CDD|223803 COG0731, COG0731, Fe-S oxidoreductases [Energy production and
conversion].
Length = 296
Score = 29.6 bits (67), Expect = 3.3
Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 43/164 (26%)
Query: 142 VLDQVRRDIRDFKQKNSLDQVIV-LWTANTERFSDIVQGLNDTA-ENLLEGVAVNNICRG 199
L V +++ DQ+ V L + + F I + + E +LEG+ I R
Sbjct: 119 SLPDVLEELKLP------DQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLE---IFRS 169
Query: 200 FYDQVIVLWTANTERFSDIVQGLNDTAEN------LLESIQKNAAEVS-----PSTIFA- 247
Y V+ T +V+G+ND E LLE I + E+ ++ +
Sbjct: 170 EYKGRTVIRTT-------LVKGINDDEEELEEYAELLERINPDFVELKTYMRPGASRYRL 222
Query: 248 -------------VASILEGNTFVPGAIDLAEKKKVFIAGDDFK 278
A L + + V +A D+ K
Sbjct: 223 PRSNMPLHEEVLEFAKELGEELGYEILDESEGSRVVLLANDEEK 266
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 29.7 bits (68), Expect = 3.4
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 217 DIVQGLNDTAENLLESIQKNAAEV-SPSTIFAVASI 251
D+ +G+ E ++E ++K + V + I VA+I
Sbjct: 112 DLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATI 147
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and
related proteins. O-fucosyltransferase-like proteins
are GDP-fucose dependent enzymes with similarities to
the family 1 glycosyltransferases (GT1). They are
soluble ER proteins that may be proteolytically cleaved
from a membrane-associated preprotein, and are involved
in the O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 206
Score = 28.9 bits (65), Expect = 3.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 86 LADAMERSKVLDFNLQIQLRPYMEHMKPRPSIY 118
LA + R+ VL L +R +H++ P I
Sbjct: 24 LAILLGRTLVLPLCLACPIRLVGKHLRFSPEIR 56
>gnl|CDD|131187 TIGR02132, phaR_Bmeg, polyhydroxyalkanoic acid synthase, PhaR
subunit. This model describes a protein, PhaR,
localized to polyhydroxyalkanoic acid (PHA) inclusion
granules in Bacillus cereus and related species. PhaR is
required for PHA biosynthesis along with PhaC and may be
a regulatory subunit.
Length = 189
Score = 29.0 bits (64), Expect = 4.2
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 24/139 (17%)
Query: 156 KNSLDQVIVLW------TANTERFSDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWT 209
K++ D+ W E FS ++ + D NL A+N+ + +QV V
Sbjct: 14 KDAYDKTESFWGKAIGDNIKREEFSALMGNVLDL--NLFYQKALNDTTGNYLEQVNVPTK 71
Query: 210 ANTERFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEGNTFVPGAIDLAEKKK 269
+ + +V L + + + E E+ A A KK
Sbjct: 72 EDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPAL----------------KKD 115
Query: 270 VFIAGDDFKSGQTKVKSVL 288
V D KS K+ +L
Sbjct: 116 VTKLKQDIKSLDKKLDKIL 134
>gnl|CDD|215749 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
Oxidoreductase.
Length = 397
Score = 29.1 bits (66), Expect = 5.1
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 221 GLNDTAENLLESIQKNA-AEVSPSTIFAVASILEGNTFVPGAIDLAEK---KKVFIAGDD 276
G+ T L ++ + EV+P I E + D E K+V I GD
Sbjct: 228 GIEATDR-FLRALAELLGKEVAPEVIAE-----ERGRLLDALADYHEYLAGKRVAIYGD- 280
Query: 277 FKSGQTKVKSVLVDFLVTAGIKPVSIVSYNH 307
L FL G++ V++ +
Sbjct: 281 ----PDLAWG-LARFLEELGMEVVAVGTGTG 306
>gnl|CDD|183419 PRK12301, bssS, biofilm formation regulatory protein BssS;
Reviewed.
Length = 84
Score = 27.0 bits (60), Expect = 6.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 78 GWDISSVNLADAM 90
GWDIS+V+ DA+
Sbjct: 15 GWDISTVDSYDAL 27
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 28.6 bits (65), Expect = 7.2
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 217 DIVQGLNDTAENLLESIQKNAAEVSPS-TIFAVASI 251
D+ +G++ E ++E ++ A VS S I VA+I
Sbjct: 114 DLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATI 149
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 27.8 bits (63), Expect = 7.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 57 DVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVL 96
V + + LLP + P DI++DG S+ + D R+K L
Sbjct: 72 AVILGEDGLLPGLKPGDIIIDG---STSDPDDTRRRAKEL 108
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 28.6 bits (65), Expect = 7.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 62 MNSLLPMVDPDDIVLDG 78
+ LLP+++ DI++DG
Sbjct: 72 IEQLLPLLEKGDIIIDG 88
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 28.5 bits (64), Expect = 8.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVL 96
M +G V +N LLP+++ DI++DG + + D R K L
Sbjct: 70 MVKAGAPVDAVINQLLPLLEKGDIIIDG---GNSHYPDTERRYKEL 112
>gnl|CDD|238934 cd01974, Nitrogenase_MoFe_beta, Nitrogenase_MoFe_beta: Nitrogenase
MoFe protein, beta subunit. The nitrogenase enzyme
catalyzes the ATP-dependent reduction of dinitrogen to
ammonia. The Molybdenum (Mo-) nitrogenase is the most
widespread and best characterized of these systems.
Mo-nitrogenase consists of the MoFe protein (component
1) and the Fe protein (component 2). MoFe is an
alpha2beta2 tetramer. This group contains the beta
subunit of the MoFe protein. Each alphabeta pair of MoFe
contains one P-cluster (at the alphabeta interface) and,
one molecule of iron molybdenum cofactor (FeMoco)
contained within the alpha subunit. The Fe protein
contains a single [4Fe-4S] cluster. Electrons are
transferred from the [4Fe-4S] cluster of the Fe protein
to the P-cluster of the MoFe and in turn to FeMoCo, the
site of substrate reduction.
Length = 435
Score = 28.4 bits (64), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 268 KKVFIAGD-DFKSGQTKVKSVLVDFLVTAGIKPVSIVSYN 306
KK + GD DF G L FL+ G++PV +++ N
Sbjct: 304 KKFALYGDPDFLIG-------LTSFLLELGMEPVHVLTGN 336
>gnl|CDD|225821 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 28.2 bits (63), Expect = 9.6
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 244 TIFAVASILEGNTFVPGAIDLAEKKKVFIAGDDFKSG 280
I+ ++LEG I L + + G+D G
Sbjct: 424 AIYRALTLLEGYELRIEDILLPDYDAATVVGEDALEG 460
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,520,060
Number of extensions: 2179615
Number of successful extensions: 1984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1966
Number of HSP's successfully gapped: 38
Length of query: 448
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,502,202
Effective search space: 2262766296
Effective search space used: 2262766296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)