RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9027
(448 letters)
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 453 bits (1165), Expect = e-156
Identities = 248/471 (52%), Positives = 327/471 (69%), Gaps = 67/471 (14%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
MLIG GGNNGST+ ++LANKHN+ +Q+K+G+K+PN++GS+TQ ST++LG+D+ G DVY
Sbjct: 69 MLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYA 128
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P NSLLPMV P+D V+ GWDI++ +L +AM+RS+VL+++LQ +L+ M +KP PSIY+P
Sbjct: 129 PFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYP 188
Query: 121 EFIAANQAGRADNVLSG---------TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTE 171
+FIAANQ RA+N ++ K L ++RRDI++FK++N+LD+VIVLWTANTE
Sbjct: 189 DFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 248
Query: 172 RFSDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLE 231
R+ ++ G+NDT ENLL+
Sbjct: 249 RYVEVSPGVNDTMENLLQ------------------------------------------ 266
Query: 232 SIQKNAAEVSPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQT 282
SI+ + E++PSTIFA ASILEG NTFVPG + LAE + FIAGDD KSGQT
Sbjct: 267 SIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKSGQT 326
Query: 283 KVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSI 342
K+KSVL FLV AGIKPVSI SYNHLGNNDGYNLSAP+QFRSKEISKS+V+DD++ASN I
Sbjct: 327 KLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDI 386
Query: 343 LYRP--GEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLI 400
LY G+K DH +VIKY+ VGDSK A+DEY SE++LGGHN IS+HN CEDSLLA+PLI
Sbjct: 387 LYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLI 446
Query: 401 LDLIILAELSSRIQFTSPTV-----AEYTYFHPVLSILSYLCKAPLVPPET 446
+DL+++ E +R+ + ++ F+PVL+ LSY KAPL P
Sbjct: 447 IDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGF 497
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD; 2.30A {Caenorhabditis
elegans} SCOP: c.2.1.3 d.81.1.3
Length = 537
Score = 445 bits (1145), Expect = e-153
Identities = 246/457 (53%), Positives = 313/457 (68%), Gaps = 55/457 (12%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDS-SGKDVY 59
+L+G GGNNGST G+I AN++ + W++K+G + N++GS+TQ++TV LG DS + ++
Sbjct: 80 LLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIF 139
Query: 60 VPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYF 119
VP ++P++ P+D+++ GWDIS NL +AM R+KV + LQ +LRP+ME + P PSIY+
Sbjct: 140 VPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYY 199
Query: 120 PEFIAANQAGRADNVLSG-TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQ 178
P+FIA+NQ RA+NV+ G K E L+ +R DIR FKQ++ L+ VIVLWTANTER++D+ Q
Sbjct: 200 PDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQ 259
Query: 179 GLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAA 238
GLN TA+ ++E SI+ N
Sbjct: 260 GLNATADEIME------------------------------------------SIRVNED 277
Query: 239 EVSPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLV 289
EVSPS IFAVASILEG NT VPG I+LAE+ KVF+ GDDFKSGQTK KS V
Sbjct: 278 EVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFV 337
Query: 290 DFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEK 349
DFLV++G+KP SIVSYNHLGNNDG NLS +QFRSKEISKS+VVDDMV SN IL+ +
Sbjct: 338 DFLVSSGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKN 397
Query: 350 PDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAEL 409
PD+ VVIKYVPYV DSKRA+DEY I +GG T +HNTCEDSLLASPLI DL IL EL
Sbjct: 398 PDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTEL 457
Query: 410 SSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPET 446
+SR+ + EY FH VLSILS L KAP+VPP T
Sbjct: 458 ASRVSYKVD--DEYKPFHSVLSILSLLLKAPVVPPGT 492
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding
rossmann fold, L-MYO-inositol 1-phosphate syntha
isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus}
PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Length = 392
Score = 319 bits (817), Expect = e-106
Identities = 87/463 (18%), Positives = 162/463 (34%), Gaps = 110/463 (23%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
L+G G +T A + + + G +++ +
Sbjct: 4 WLVGAYGIVSTTAMVGARAIERGIAPK----------IGLVSE----------------L 37
Query: 61 PMNSLLPMVDPDDIVLDGWDISSV-NLADAMER----SKVLDFNLQIQLRPYMEHMKPRP 115
P + P G +I + N +A + ++ D + ++ +E + R
Sbjct: 38 PHFEGIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSDLEGIVARK 97
Query: 116 SIYFPEFIAANQAGRADNVL--SGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERF 173
+ G + + E++ ++ DI+ F
Sbjct: 98 GTALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD------------------ 139
Query: 174 SDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESI 233
D+ +V+ A+TE + + + + E I
Sbjct: 140 ----------------------------DETVVINVASTEPLPNYSEEYHGSLEGFERMI 171
Query: 234 QKNAAE-VSPSTIFAVASILEG----------NTFVPGAIDLAEKKKVFIAGDDFKSGQT 282
++ E S S ++A A++ G + +P +LAEKK V AG+D K+G+T
Sbjct: 172 DEDRKEYASASMLYAYAALKLGLPYANFTPSPGSAIPALKELAEKKGVPHAGNDGKTGET 231
Query: 283 KVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSI 342
VK+ L ++ V +SYN LG+ DG LSA SK +SK V++ M+
Sbjct: 232 LVKTTLAPMFAYRNMEVVGWMSYNILGDYDGKVLSARDNKESKVLSKDKVLEKML----- 286
Query: 343 LYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILD 402
G P I+Y P + D+K A D + LG D+++A+PLILD
Sbjct: 287 ----GYSPYSITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILD 342
Query: 403 LIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPE 445
+ + + V+ +++ K+P+
Sbjct: 343 IARFLLFAKKKG-----------VKGVVKEMAFFFKSPMDTNV 374
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 263 bits (673), Expect = 2e-84
Identities = 75/466 (16%), Positives = 149/466 (31%), Gaps = 126/466 (27%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
+++G G ST + + + V
Sbjct: 17 LILG-QGYVASTFVAGLEKLRKGE------------------------------IEPYGV 45
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P+ LP+ D ++ +D+ + + ++ Y + S P
Sbjct: 46 PLARELPIGFEDIKIVGSYDVDRAKIGKKLSE----------VVKQYWNDVDSLTSD--P 93
Query: 121 EFIAANQAGRADNVLS-GTKQEVLDQVRRDIRDF-KQKNSLDQVIVLWTANTERFSDIVQ 178
E G N+ E ++ + K+ LD +++ T TE F
Sbjct: 94 EIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPF-- 151
Query: 179 GLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAA 238
E+LL++I+ N
Sbjct: 152 ---------------------------------------------GNKEDLLKAIENNDK 166
Query: 239 E-VSPSTIFAVASILE-----GNTFV----------PGAIDLAEKKKVFIAGDDFKSGQT 282
E ++ + ++A A+ L G FV P ++LA++ + + GDD +G T
Sbjct: 167 ERLTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGATGAT 226
Query: 283 KVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSI 342
+ ++ L + +N GN D L+ + +SKE +KS++V D++ +
Sbjct: 227 PFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILGYD-- 284
Query: 343 LYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILD 402
P + Y+ +GD K G + + ++ DS L++D
Sbjct: 285 ------APHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRINDSPALGGLLVD 338
Query: 403 LIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPETSI 448
L+ L +++ + F V + ++ K P E +I
Sbjct: 339 LVRLGKIA----------LDRKEFGTVYPVNAFYMKNPGPAEEKNI 374
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; HET: NAD; 1.95A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3
Length = 367
Score = 227 bits (580), Expect = 7e-71
Identities = 67/313 (21%), Positives = 107/313 (34%), Gaps = 38/313 (12%)
Query: 149 DIRDFKQKNSLDQVIVLWTANTERFSDIV-QGLNDTAENLLEGVAVNNICRGFYDQVIVL 207
D+ K L I NT + +D+ + L+G+ +Y I L
Sbjct: 69 DVDAKKVGFDLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIG------KYYADTIEL 122
Query: 208 WTANTERFSDIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASILEGNTFV--------- 258
A D+VQ L + ++L S +E +A +I G FV
Sbjct: 123 SDAEPV---DVVQALKEAKVDVLVSYLPVGSE-EADKFYAQCAIDAGVAFVNALPVFIAS 178
Query: 259 -PGAIDLAEKKKVFIAGDDFKS--GQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYN 315
P +V I GDD KS G T VL G++ + N GN D N
Sbjct: 179 DPVWAKKFTDARVPIVGDDIKSQVGATITHRVLAKLFEDRGVQLDRTMQLNVGGNMDFLN 238
Query: 316 LSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSE 375
+ ++ SK+ISK+ V + K H +V ++ D K A
Sbjct: 239 MLERERLESKKISKTQAVTSN-----LKREFKTKDVHIGPSDHVGWLDDRKWAYVRLEGR 293
Query: 376 ILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSY 435
+ DS ++ +I+D + A+++ PV+ +Y
Sbjct: 294 AFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKD----------RGIGGPVIPASAY 343
Query: 436 LCKAPLVPPETSI 448
L K+P I
Sbjct: 344 LMKSPPEQLPDDI 356
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 6e-11
Identities = 84/492 (17%), Positives = 149/492 (30%), Gaps = 160/492 (32%)
Query: 3 IGW--GGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKD--- 57
I W N S +L L +Q PNW SS ++L + S +
Sbjct: 184 IFWLNLKNCNSP--ETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHS-IQAELR 235
Query: 58 ------VYVPMNSLLPMVDPDDIVLDGWDISSVNLADAME-RSKVL---------DF-NL 100
Y N LL VL ++ + +A K+L DF +
Sbjct: 236 RLLKSKPYE--NCLL--------VLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 101 QIQLRPYMEHMK----PRPSIYFPEFIAANQAGRADNVLSGTKQE-----------VLDQ 145
++H P + L Q+ L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVK---SLLL--------KYLDCRPQDLPREVLTTNPRRLSI 332
Query: 146 VRRDIRDFKQKNSLDQVIVLW-TANTERFSDIVQ-GLN--DTAE--NLLEGVAVNNICRG 199
+ IRD + D W N ++ + I++ LN + AE + + ++V
Sbjct: 333 IAESIRDGL--ATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV------ 380
Query: 200 FYDQV-I------VLWTANTERFS-DIVQGLNDTAENLLESIQKNAAEVSPSTIFAVASI 251
F I ++W + +V L+ + L+E K E STI
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVE---KQPKE---STIS----- 427
Query: 252 LEGNTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDF------LVTAGIKPVSIVSY 305
+P I L K K+ + + +VD + + P + Y
Sbjct: 428 ------IPS-IYLELKVKL--------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 306 --NHLGNNDGYNLSAPQQ------FRSKEIS----KSNVVDDMVASNSILYRPGEKPDHT 353
+H+G ++L + FR + + + D A N+
Sbjct: 473 FYSHIG----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA---SGSILNTLQ 525
Query: 354 VVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRI 413
+ Y PY+ D+ + + IL E++L+ S DL+ +A +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL---DFLPK----IEENLICSKY-TDLLRIA-----L 572
Query: 414 QFTSPTVAEYTY 425
+ E +
Sbjct: 573 MAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 1e-08
Identities = 71/421 (16%), Positives = 129/421 (30%), Gaps = 115/421 (27%)
Query: 102 IQLRPY-MEHMKPRPSIYFPE--FIAANQ--------------AGRADNVLSGTKQEV-- 142
RP + H + P F A+Q AD+ + T E+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPAELVG 62
Query: 143 --LDQVRRDIRDFKQKNSLDQVI--VLWTANTE--RFSDI---VQGLNDTAENLLEGVAV 193
L V + + DQV+ L +DI L + L V
Sbjct: 63 KFLGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL--VKT 119
Query: 194 NNICRGFYDQVIV------------LWTANTERFSDIV-----QGLNDT--AENLLESIQ 234
+ + + I+ L+ A E + +V QG D E L +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLY 177
Query: 235 KNAAEVSPSTIFAVASILEGNTFVPGAIDLAEKKKVFIAGDDFKS-GQTKVKSVLVDFLV 293
+ + I A L + +D +KVF G + + + D+L+
Sbjct: 178 QTYHVLVGDLIKFSAETLS--ELIRTTLD---AEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 294 TAGIKPVS--------IVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSI--- 342
+ P+S + Y G+ P + RS + +V + +I
Sbjct: 233 SI---PISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 343 -----LYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSL--- 394
+ K I + ++G R + Y + ++ + EDSL
Sbjct: 287 DSWESFFVSVRK-----AITVLFFIG--VRCYEAY-------PNTSLP-PSILEDSLENN 331
Query: 395 --LASPL--ILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAP--LV---PPE 445
+ SP+ I +L ++ + T+ + + I L LV PP+
Sbjct: 332 EGVPSPMLSISNL-TQEQVQDYVNKTNSHLPA----GKQVEI--SLVNGAKNLVVSGPPQ 384
Query: 446 T 446
+
Sbjct: 385 S 385
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/416 (13%), Positives = 108/416 (25%), Gaps = 173/416 (41%)
Query: 39 GSITQSSTVRLGMDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDF 98
GS Q GM G D+Y S D W+ AD + F
Sbjct: 1625 GS--QE----QGM---GMDLY--KTS--------KAAQDVWN-----RADNHFKDT-YGF 1659
Query: 99 NLQ--IQLRPYMEHMKPRPSIYFPEFIAANQAGRA--DNVLSGTKQEVLDQVRRDIRDFK 154
++ + P +I+F + G+ +N + + ++D + + FK
Sbjct: 1660 SILDIVINNP------VNLTIHFG-----GEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 155 QKN-SLDQVIVLWTANTERFSDIVQGLNDTAEN-----LLEGVAVNNICR--GFYDQVIV 206
+ N + + L+ T + L A + G
Sbjct: 1709 EINEHSTSYT--FRSEKGL-------LSAT-QFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 207 L-------WTA-----NTERFSDIVQ-----GLNDTAENLLESIQKNAAEVSPSTIFAVA 249
+ A + +V+ G+ T + + + + + A+
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGM--TMQVAVPRDELGRSNYG---MIAIN 1813
Query: 250 SILEGNTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYNHLG 309
PG + + + + +V+ + V IV+YN
Sbjct: 1814 ---------PGRV------AASFSQEALQ--------YVVERVGKRTGWLVEIVNYN--- 1847
Query: 310 NNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRAL 369
QQ V GD RAL
Sbjct: 1848 -------VENQQ--------------------------------YVA-----AGD-LRAL 1862
Query: 370 DEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTY 425
D + +L N I + +D+I L + + V + +
Sbjct: 1863 DT-VTNVL----NFIKLQK------------IDIIELQK-----SLSLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.029
Identities = 35/237 (14%), Positives = 75/237 (31%), Gaps = 82/237 (34%)
Query: 80 DISSVNLADAMERSK--------VLDFNLQIQLRPYME----HMKPRPSIYFPEFIA-AN 126
+ L D++E ++ + + + Q++ Y+ H+ + I+ N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVE----ISLVN 372
Query: 127 QAGRADNVLSGTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQGLNDTAEN 186
G + V+SG Q L + +R K + LDQ + ++ +FS + L
Sbjct: 373 --GAKNLVVSGPPQS-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS--NRFL------ 421
Query: 187 LLEGVAVNNICRGFYDQVIVLWTANTERF-SDIVQGLNDTAENLLESIQKNAAEVSPSTI 245
+ F S + L ++ + + + KN +
Sbjct: 422 -----------------PV------ASPFHSHL---LVPASDLINKDLVKNNVSFNAK-- 453
Query: 246 FAVASILEGNTFVPGAIDLAEKKKVF--IAGDDFKSGQTKVKSVLVDFLVTAGIKPV 300
D+ + V+ G D + + +VD ++ PV
Sbjct: 454 -----------------DI--QIPVYDTFDGSDLRVLSGSISERIVDCIIR---LPV 488
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics,
GLUT seattle structural genomics center for infectious
disease; 2.40A {Burkholderia pseudomallei}
Length = 249
Score = 34.9 bits (81), Expect = 0.035
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 27/113 (23%)
Query: 25 CWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSV 84
G + G + + + +G D+S ++P D V G+D+
Sbjct: 4 HHHHHMGTLEAQTQGPGSMAKELVVGTDTS----FMPFE----FKQGDKYV--GFDL--- 50
Query: 85 NLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRADNVLSG 137
+L + +K + +IQ + F I A Q D LSG
Sbjct: 51 DLWAEI--AKGAGWTYKIQ------------PMDFAGLIPALQTQNIDVALSG 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.30
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 406 LAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPL 441
L +L + ++ + A P L+I KA +
Sbjct: 22 LKKLQASLKLYADDSA------PALAI-----KATM 46
Score = 28.8 bits (63), Expect = 2.1
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 11/34 (32%)
Query: 325 KEISKSNVVDDMVASNSI-LYRPGEKPDHTVVIK 357
+ + K S+ LY P + IK
Sbjct: 20 QALKK--------LQASLKLYADDSAP--ALAIK 43
Score = 28.4 bits (62), Expect = 3.0
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 230 LE-SIQKNAAEVSPSTIFAVASILE 253
L+ S++ A + +P+ A+ + +E
Sbjct: 25 LQASLKLYADDSAPA--LAIKATME 47
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 31.6 bits (72), Expect = 0.59
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 268 KKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYN 306
K+ + GD LV FL+ G +PV I+ +N
Sbjct: 365 KRFALWGDPDFVMG------LVKFLLELGCEPVHILCHN 397
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 30.5 bits (69), Expect = 1.4
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 268 KKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVSYN 306
KK + GD L FL+ G +P I+S+N
Sbjct: 361 KKFGLYGDPDFVMG------LTRFLLELGCEPTVILSHN 393
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 30.0 bits (68), Expect = 1.5
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 33/128 (25%)
Query: 10 GSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYVPMNSLLPMV 69
G G+ + +S + V +G D++ + P +
Sbjct: 13 GLVPRGSHMG-----GGRSTETSSSSGG-DGGATKKKVVVGTDAA----FAPFE----YM 58
Query: 70 DPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAG 129
IV G+D+ +L DA+ K + +++ +I + A+ Q+
Sbjct: 59 QKGKIV--GFDV---DLLDAV--MKAAGLDYELK------------NIGWDPLFASLQSK 99
Query: 130 RADNVLSG 137
D +SG
Sbjct: 100 EVDMGISG 107
>3nat_A Uncharacterized protein; alpha-beta half sandwich, structural
genomics, PSI-2, protei structure initiative; HET: CIT;
2.92A {Enterococcus faecalis}
Length = 164
Score = 29.2 bits (65), Expect = 1.6
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 140 QEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQGLNDTAEN 186
+ VLD+ + D+ DF + + + W F +++ + +T +
Sbjct: 112 KVVLDEGQSDLLDFLSDETAEVFELHW--EPADFEAMIKKVAETEKE 156
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F,
structural genomics, unknown function; NMR {Haemophilus
influenzae} SCOP: d.17.7.1
Length = 110
Score = 28.1 bits (62), Expect = 2.5
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 62 MNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKP 113
M + + +DPD + +DI + ++ + +L FNLQ + R +E ++
Sbjct: 4 MTTEIKKLDPDTAIDIAYDIFLEMAGENLDPADILLFNLQFEERGGVEFVET 55
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic,
transport protein; 1.90A {Salmonella enterica} PDB:
3r39_A 4f3s_A
Length = 259
Score = 29.2 bits (66), Expect = 2.7
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 26/99 (26%)
Query: 39 GSITQSSTVRLGMDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDF 98
SI + T+ + + + PM D L G D+ L + +
Sbjct: 23 DSIVEGRTLNVAVSPA----SPPML----FKSADG-KLQGIDL---ELFSSY--CQSRHC 68
Query: 99 NLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRADNVLSG 137
L I + + A +G+AD SG
Sbjct: 69 KLNIT------------EYAWDGMLGAVASGQADVAFSG 95
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 28.8 bits (65), Expect = 3.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDG 78
+ +G V +N ++P+++ DI++DG
Sbjct: 81 LVKAGAPVDALINQIVPLLEKGDIIIDG 108
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 28.9 bits (65), Expect = 4.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 268 KKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVS 304
KKV + GD + L F++ G P +V+
Sbjct: 313 KKVALLGDPDEIIA------LSKFIIELGAIPKYVVT 343
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 28.4 bits (64), Expect = 4.3
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 28/100 (28%)
Query: 39 GSITQSSTVRLGMDSSGKDVYVPMNSLLPMVDPDD-IVLDGWDISSVNLADAMERSKVLD 97
G + S +G +++ Y P VD +V G+DI +LA + S L
Sbjct: 5 GGDSNSEKFIVGTNAT----YPPFE----FVDKRGEVV--GFDI---DLAREI--SNKLG 49
Query: 98 FNLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRADNVLSG 137
L ++ F I + R D V++G
Sbjct: 50 KTLDVR------------EFSFDALILNLKQHRIDAVITG 77
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 28.8 bits (65), Expect = 4.4
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVL 96
+ +G + L + + DI++D + + D R++ L
Sbjct: 75 LVQAGAATDSTIEQLKKVFEKGDILVDT---GNAHFKDQGRRAQQL 117
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide,
complex (binding protein/peptide); 1.94A {Escherichia
coli} SCOP: c.94.1.1 PDB: 1ggg_A
Length = 226
Score = 28.3 bits (64), Expect = 4.5
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 27/92 (29%)
Query: 46 TVRLGMDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLR 105
+ + D++ +VP D V G+D+ +L A+ +K L + +++
Sbjct: 4 KLVVATDTA----FVPFE----FKQGDLYV--GFDV---DLWAAI--AKELKLDYELK-- 46
Query: 106 PYMEHMKPRPSIYFPEFIAANQAGRADNVLSG 137
+ F I A Q D L+G
Sbjct: 47 ----------PMDFSGIIPALQTKNVDLALAG 68
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 28.7 bits (65), Expect = 4.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDG 78
+ +G+ V + L+P++D DI++DG
Sbjct: 73 LVKAGQAVDNFIEKLVPLLDIGDIIIDG 100
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 28.7 bits (65), Expect = 4.8
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 337 VASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDE-YTSEILLGG----HNTISMHNTCE 391
A +L R GE+ V P VG K +E + +GG H
Sbjct: 291 FAVTWLLDRLGERLGFGVT--TTP-VGF-KWIKEEFLKGDCFIGGEESGGVGYPEHLPER 346
Query: 392 DSLLASPLILDLII-----LAELSSRIQ 414
D +L S L+L+ + LAE ++
Sbjct: 347 DGILTSLLLLESVAATGKDLAEQFKEVE 374
>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione
S-transferase, N-terminal domain, S genomics; 1.85A
{Escherichia coli}
Length = 215
Score = 27.7 bits (62), Expect = 5.9
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 86 LADAM-----ERSKVLDFNLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRA 131
+AD R + + +L Y R S FIA +
Sbjct: 167 IADTDLALMINRLVLHGDEVPERLVDYATFQWQRAS--VQRFIALSAKQSG 215
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 28.2 bits (63), Expect = 7.2
Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 6/37 (16%)
Query: 268 KKVFIAGDDFKSGQTKVKSVLVDFLVTAGIKPVSIVS 304
+ IA D L + G V+ V
Sbjct: 314 ARTAIAADPDLLLG------FDALLRSMGAHTVAAVV 344
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDG 78
M +G ++SL P +D DI++DG
Sbjct: 85 MVKAGAGTDAAIDSLKPYLDKGDIIIDG 112
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
function, B-subunit binding, isomerase,
nucleotide-binding, topoisomerase; HET: DNA; 1.95A
{Myxococcus xanthus}
Length = 369
Score = 27.9 bits (63), Expect = 8.0
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 263 DLAEKKKVFIAGDDFKSGQTKVKSVLV 289
L+ + + G T + +V
Sbjct: 282 KLSGETRGAFPWARVAQGLTAIVAVSG 308
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 27.9 bits (63), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 51 MDSSGKDVYVPMNSLLPMVDPDDIVLDG 78
M +G + SLLP++D DI++DG
Sbjct: 75 MVQAGAATDATIKSLLPLLDIGDILIDG 102
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 27.7 bits (62), Expect = 8.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 63 NSLLPMVDPDDIVLDG 78
+ P++ +DIV+DG
Sbjct: 99 QRMTPLLAANDIVIDG 114
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP;
2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Length = 391
Score = 27.8 bits (63), Expect = 9.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 263 DLAEKKKVFIAGDDFKSGQTKVKSV 287
++K KV GDD + G V SV
Sbjct: 300 GYSKKAKVSATGDDAREGLIAVVSV 324
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic,
transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae}
PDB: 3g41_A* 3n26_A*
Length = 268
Score = 27.3 bits (61), Expect = 9.8
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 26/99 (26%)
Query: 39 GSITQSSTVRLGMDSSGKDVYVPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDF 98
I ++ +G +++ Y P VD + G+DI LA A+ S+ L
Sbjct: 25 SKIDRNRIWIVGTNAT----YPPFEY----VDAQG-EVVGFDID---LAKAI--SEKLGK 70
Query: 99 NLQIQLRPYMEHMKPRPSIYFPEFIAANQAGRADNVLSG 137
L+++ F I + R D +L+G
Sbjct: 71 QLEVR------------EFAFDALILNLKKHRIDAILAG 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,719,666
Number of extensions: 406677
Number of successful extensions: 928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 48
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)