RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9027
(448 letters)
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 333 bits (856), Expect = e-112
Identities = 143/344 (41%), Positives = 202/344 (58%), Gaps = 67/344 (19%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
MLIG GGNNGST+ ++LANKHN+ +Q+K+G+K+PN++GS+TQ ST++LG+D+ G DVY
Sbjct: 61 MLIGLGGNNGSTLVASVLANKHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYA 120
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P NSLLPMV P+D V+ GWDI++ +L +AM+RS+VL+++LQ +L+ M +KP PSIY+P
Sbjct: 121 PFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKAKMSLVKPLPSIYYP 180
Query: 121 EFIAANQAGRADNVLS---------GTKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTE 171
+FIAANQ RA+N ++ K L ++RRDI++FK++N+L
Sbjct: 181 DFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENAL------------ 228
Query: 172 RFSDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLE 231
D+VIVLWTANTER+ ++ G+NDT ENLL+
Sbjct: 229 ------------------------------DKVIVLWTANTERYVEVSPGVNDTMENLLQ 258
Query: 232 SIQKNAAEVSPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQT 282
SI+ + E++PSTIFA ASILEG NTFVPG + LAE + FIAGDD K
Sbjct: 259 SIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLL 318
Query: 283 KVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKE 326
+++D LV +F +
Sbjct: 319 A-TPLIIDLLVMTE------FCTRVSYKKVDPVKEDAGKFENFY 355
Score = 130 bits (329), Expect = 2e-34
Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 36/187 (19%)
Query: 296 GIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEI---SKSNVVDDMV---ASNSILYRPGEK 349
+ + ++ + GN Q ++I + N +D ++ +N+ Y
Sbjct: 188 DERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTERYVEVSP 247
Query: 350 PDH-------------------------TVVIKYVPYVGDSKRALDEYTSEILLGGHNTI 384
+ +++ VPY+ S + L T
Sbjct: 248 GVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTF 307
Query: 385 SMHNTCEDSLLASPLILDLIILAELSSRIQFTS-----PTVAEYTYFHPVLSILSYLCKA 439
+ +DSLLA+PLI+DL+++ E +R+ + ++ F+PVL+ LSY KA
Sbjct: 308 IAGDDLKDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKA 367
Query: 440 PLVPPET 446
PL P
Sbjct: 368 PLTRPGF 374
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 330 bits (848), Expect = e-111
Identities = 145/385 (37%), Positives = 212/385 (55%), Gaps = 64/385 (16%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGK-DVY 59
+L+G GGNNGST G+I AN++ + W++K+G + N++GS+TQ++TV LG DS+ + ++
Sbjct: 58 LLVGLGGNNGSTAVGSIFANQYAMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIF 117
Query: 60 VPMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYF 119
VP ++P++ P+D+++ GWDIS NL +AM R+KV + LQ +LRP+ME + P PSIY+
Sbjct: 118 VPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRPFMEPIVPLPSIYY 177
Query: 120 PEFIAANQAGRADNVLSG-TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQ 178
P+FIA+NQ RA+NV+ G K E L+ +R DIR FKQ++ L
Sbjct: 178 PDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHEL------------------- 218
Query: 179 GLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAA 238
+ VIVLWTANTER++D+ QGLN TA+ ++ESI+ N
Sbjct: 219 -----------------------ECVIVLWTANTERYTDVRQGLNATADEIMESIRVNED 255
Query: 239 EVSPSTIFAVASILEG---------NTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLV 289
EVSPS IFAVASILEG NT VPG I+LAE+ KVF+ GDDF ++ + S L+
Sbjct: 256 EVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDF---KSLLASPLI 312
Query: 290 DFLVTAG--IKPVSIVSYNHLGNNDG------YNLSAPQQFRSKEISKSNVVDDMVASNS 341
L VS + L AP IS + + +
Sbjct: 313 YDLAILTELASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKL 372
Query: 342 ILYRPGEKPDHTVVIKYVPYVGDSK 366
+ G D + I++ + +K
Sbjct: 373 VTALAGFPSDTDMQIEFFTQLPAAK 397
Score = 107 bits (269), Expect = 2e-26
Identities = 59/217 (27%), Positives = 85/217 (39%), Gaps = 26/217 (11%)
Query: 230 LESIQKNAAEVSPSTIFAVASILEGNTFVPGAIDLAEKKKVFIAGDDFKSGQTKVKSVLV 289
+E I + P I + N +PG L + + FK + +++ V+V
Sbjct: 166 MEPIVPLPSIYYPDFIASNQGD-RANNVIPGDNKLEHLEHIRADIRKFKQ-EHELECVIV 223
Query: 290 DFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVASNSILYRPGEK 349
+ N + + E+S SN+ Y G
Sbjct: 224 LWTANTERYTDVRQGLN----ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGS- 278
Query: 350 PDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAEL 409
P +T+V + K + +GG + SLLASPLI DL IL EL
Sbjct: 279 PQNTLVPGLIELAERHK---------VFVGGDDF--------KSLLASPLIYDLAILTEL 321
Query: 410 SSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPET 446
+SR+ + EY FH VLSILS L KAP+VPP T
Sbjct: 322 ASRVSYKV--DDEYKPFHSVLSILSLLLKAPVVPPGT 356
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 287
Score = 200 bits (509), Expect = 9e-62
Identities = 48/349 (13%), Positives = 101/349 (28%), Gaps = 99/349 (28%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
L+G G +T A + + G +++
Sbjct: 4 WLVGAYGIVSTTAMVGARAIERGIAP----------KIGLVSELPHFEG----------- 42
Query: 61 PMNSLLPMVDPDDIVLDGWDISSV-NLADAMER----SKVLDFNLQIQLRPYMEHMKPRP 115
+ P G +I + N +A + ++ D + ++ +E + R
Sbjct: 43 -----IEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVKSDLEGIVARK 97
Query: 116 SIYFPEFIAANQAGRADNVLSG--TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERF 173
+ G + + E++ ++ DI+ F
Sbjct: 98 GTALNCGSGIKELGDIKTLEGEGLSLAEMVSRIEEDIKSFAD------------------ 139
Query: 174 SDIVQGLNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESI 233
D+ +V+ A+TE + + + + E I
Sbjct: 140 ----------------------------DETVVINVASTEPLPNYSEEYHGSLEGFERMI 171
Query: 234 QKNAAE-VSPSTIFAVASILEG----------NTFVPGAIDLAEKKKVFIAGDDFKS--G 280
++ E S S ++A A++ G + +P +LAEKK V AG+D K+
Sbjct: 172 DEDRKEYASASMLYAYAALKLGLPYANFTPSPGSAIPALKELAEKKGVPHAGNDGKAIVA 231
Query: 281 QTKVKSVLVDFLVT-----AGIKPVSIVSYNHLGNNDGYNLSAPQQFRS 324
+ + L G+ + + + N +QF
Sbjct: 232 APLILDIARFLLFAKKKGVKGVVKEMAFFFKSPMDTNVINTH--EQFVV 278
>d1vkoa2 d.81.1.3 (A:315-428) Myo-inositol 1-phosphate synthase
{Caenorhabditis elegans [TaxId: 6239]}
Length = 114
Score = 182 bits (464), Expect = 2e-57
Identities = 80/114 (70%), Positives = 91/114 (79%)
Query: 279 SGQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVA 338
SGQTK KS VDFLV++G+KP SIVSYNHLGNNDG NLS +QFRSKEISKS+VVDDMV
Sbjct: 1 SGQTKFKSAFVDFLVSSGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVK 60
Query: 339 SNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCED 392
SN IL+ + PD+ VVIKYVPYV DSKRA+DEY I +GG T +HNTCED
Sbjct: 61 SNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVHNTCED 114
>d1p1ja2 d.81.1.3 (A:323-437) Myo-inositol 1-phosphate synthase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 115
Score = 176 bits (448), Expect = 5e-55
Identities = 85/115 (73%), Positives = 98/115 (85%), Gaps = 2/115 (1%)
Query: 279 SGQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVA 338
SGQTK+KSVL FLV AGIKPVSI SYNHLGNNDGYNLSAP+QFRSKEISKS+V+DD++A
Sbjct: 1 SGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIA 60
Query: 339 SNSILYRP--GEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCE 391
SN ILY G+K DH +VIKY+ VGDSK A+DEY SE++LGGHN IS+HN CE
Sbjct: 61 SNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCE 115
>d1vjpa2 d.81.1.3 (A:210-316) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 107
Score = 141 bits (358), Expect = 8e-42
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 279 SGQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVA 338
+G T + ++ L + +N GN D L+ + +SKE +KS++V D++
Sbjct: 2 TGATPFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDDGKNKSKEFTKSSIVKDILG 61
Query: 339 SNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCED 392
+ P + Y+ +GD K G + + ++ D
Sbjct: 62 YD--------APHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELMINGRIND 107
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 140 bits (353), Expect = 5e-39
Identities = 44/352 (12%), Positives = 95/352 (26%), Gaps = 108/352 (30%)
Query: 1 MLIGWGGNNGSTVTGAILANKHNLCWQSKDGLKKPNWYGSITQSSTVRLGMDSSGKDVYV 60
+++G G ST + + + V
Sbjct: 6 LILGQG-YVASTFVAGLEKLRKGE------------------------------IEPYGV 34
Query: 61 PMNSLLPMVDPDDIVLDGWDISSVNLADAMERSKVLDFNLQIQLRPYMEHMKPRPSIYFP 120
P+ LP+ D ++ +D+ + + +N L P
Sbjct: 35 PLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS-----DPEIRKGVH 89
Query: 121 EFIAANQAGRADNVLSG-TKQEVLDQVRRDIRDFKQKNSLDQVIVLWTANTERFSDIVQG 179
N A+ + T +E +D + ++ +
Sbjct: 90 LGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTEL-------------------------- 123
Query: 180 LNDTAENLLEGVAVNNICRGFYDQVIVLWTANTERFSDIVQGLNDTAENLLESIQKNAAE 239
D +++ T TE F + + L +
Sbjct: 124 ----------------------DPDVIVNTCTTEAFVPF----GNKEDLLKAIENNDKER 157
Query: 240 VSPSTIFAVASILE-----GNTFV----------PGAIDLAEKKKVFIAGDDFKSGQTKV 284
++ + ++A A+ L G FV P ++LA++ + + GDD +
Sbjct: 158 LTATQVYAYAAALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGSPA---L 214
Query: 285 KSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDM 336
+LVD + I + + + + + P K I + + M
Sbjct: 215 GGLLVDLVRLGKIALDRKE-FGTVYPVNAFYMKNPGPAEEKNIPRIIAYEKM 265
>d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 111
Score = 134 bits (339), Expect = 6e-39
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 280 GQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVAS 339
G T VL G++ + N GN D N+ ++ SK+ISK+ V +
Sbjct: 3 GATITHRVLAKLFEDRGVQLDRTMQLNVGGNMDFLNMLERERLESKKISKTQAVTSNLK- 61
Query: 340 NSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDS 393
K H +V ++ D K A + DS
Sbjct: 62 ----REFKTKDVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDS 111
>d1u1ia2 d.81.1.3 (A:228-332) Myo-inositol 1-phosphate synthase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 127 bits (321), Expect = 2e-36
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 279 SGQTKVKSVLVDFLVTAGIKPVSIVSYNHLGNNDGYNLSAPQQFRSKEISKSNVVDDMVA 338
+G+T VK+ L ++ V +SYN LG+ DG LSA SK +SK V++ M+
Sbjct: 1 TGETLVKTTLAPMFAYRNMEVVGWMSYNILGDYDGKVLSARDNKESKVLSKDKVLEKML- 59
Query: 339 SNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTI 384
G P I+Y P + D+K A D + LG
Sbjct: 60 --------GYSPYSITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKF 97
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 25.8 bits (57), Expect = 4.1
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 139 KQEVLDQVRRDIRD-----FKQKNSLDQVIVLWTANTERFSDI 176
K+++LD++R R F +++ I + + F+DI
Sbjct: 14 KRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFV-SKAFFADI 55
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 25.8 bits (57), Expect = 4.3
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 139 KQEVLDQVRRDIRD-----FKQKNSLDQVIVLWTANTERFSDI 176
Q++ ++ R+ F ++L+Q I + N F+D+
Sbjct: 11 SQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFV-NMAFFADV 52
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
103690]}
Length = 98
Score = 25.4 bits (56), Expect = 5.2
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 139 KQEVLDQVRRDIRD-----FKQKNSLDQVIVLWTANTERFSDI 176
+Q +L Q++ D R F +L + I + N ++I
Sbjct: 4 QQILLQQLKSDYRQILLSYFTTDKALKEKIDKFI-NAVFCANI 45
>d2imha1 d.153.1.7 (A:1-229) Hypothetical protein SPO2555
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 229
Score = 26.4 bits (58), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 343 LYRPGEKPDHTVVIKYVPYVGDSKRALDE 371
LY+ D+ + VP + D +R LDE
Sbjct: 194 LYQKATTGDYADWARQVPVLSDKERILDE 222
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 26.3 bits (57), Expect = 7.4
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 384 ISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPV 429
+ + + AS +L + +AE + I F P V E T +
Sbjct: 174 SVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL 219
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,603,005
Number of extensions: 72441
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 23
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)