BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy903
(739 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 188/427 (44%), Gaps = 53/427 (12%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL A+ G + IV+ L+ GA N + TPL A GH V + LL+ A V
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
++ TPL AA GH + K+LLE A N + + L +A +GH++ V LL
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAAREGHVETVLALL 133
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI 370
A Q T + T L A+ G V VA+LLL+ A +A ++ P
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTP---------- 182
Query: 371 SYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 430
L A ++ VK LL G S H G + L +A E+A+ LL
Sbjct: 183 -------LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Query: 431 ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAK 490
+ ++G TPL AA G + +S A + +KS GL ++
Sbjct: 236 GSANAESVQG-VTPLHLAAQEGHAEMVALLLSKQANGNL--GNKS--GLTPLHLV----- 285
Query: 491 INAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRY 547
G + VAD L+K+G ++ TPL A+ G+++LV++
Sbjct: 286 ----------------AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 548 LLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGH 602
LL A V+AKT+ G + L A + GHTD+ LLL GA+ D +T L A + G+
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389
Query: 603 ANVVQLL 609
+V +L
Sbjct: 390 ISVTDVL 396
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 190/426 (44%), Gaps = 58/426 (13%)
Query: 258 TPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQE 317
TPL A+ GH+ + K LL+ GA N SN E+ L +A GH ++ ++LL A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 318 HKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRS 377
K + T L A+ GH + KLLL++ A P+ +
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNAN------------------PNLATTAGHTP 116
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L A +G V+TV LL + S T +G + L +A G +A++LL A+ G
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXX 497
G TPL A NL + V P+ + NG I AK N
Sbjct: 177 KNG-LTPLHVAV---HHNNL-DIVKLLLPRGGSPHSPAWNGYTPLHI---AAKQNQ---- 224
Query: 498 XXXXXXXXXCCGGFLDVADFLLKNG--ANIE-LGASTPLMEAAQEGHLELVRYLLDSGAQ 554
++VA LL+ G AN E + TPL AAQEGH E+V LL A
Sbjct: 225 --------------VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 555 VHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTM-----LIEAAKGGHANVVQLL 609
+ ++G T L + GH VAD+L+ +G +D +T L A+ G+ +V+ L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHA 664
L V+AKT+ G + L A + GHTD+ LLL GA+ D +T L A + G+
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390
Query: 665 NVVQLL 670
+V +L
Sbjct: 391 SVTDVL 396
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 120/422 (28%), Positives = 185/422 (43%), Gaps = 26/422 (6%)
Query: 9 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 68
G + VK LL G S + + + E+ L +A AG+ E+A+ LL A V + K + TP
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTP 83
Query: 69 LMEAASSGF-------------GKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMR 115
L AA G LAT G R AL E A+ M
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 116 NENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
+ P L A G V+ + LL + G + L +A ++ ++L
Sbjct: 144 KKGFTP-----LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 176 LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGH 235
L + G TPL AA +E+ R L+ +G N +S G TPL A GH
Sbjct: 199 LPRGGSPHSPAWNG-YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257
Query: 236 EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALT 295
+V +LL AN N++G TPL A GHV VA +L+++G ++ + + L
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTPLH 316
Query: 296 LACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYAR 355
+A + G++ +V+FLL AD KT ++ L +A+ GH ++ LLL +GA S + +
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSS 375
Query: 356 HDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHE----TTDEGESLL 411
P +R IS T +V + + + K ++ +V E + DEGE L+
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELI 435
Query: 412 SL 413
S
Sbjct: 436 SF 437
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 158/371 (42%), Gaps = 47/371 (12%)
Query: 385 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
G + VK LL G S + + + E+ L +A AG+ E+A+ LL A V + K + TP
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTP 83
Query: 445 LMEAASSGR--------QCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXX 496
L AA G + N N +++ A H ++ + L+ A
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 497 XXXXXXXXXXCCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 553
G + VA+ LL+ A+ TPL A +L++V+ LL G
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 554 QVHAKTQTGDTALTYACENGHTDVADLLLSYGAN-----LDNSTMLIEAAKGGHANVVQL 608
H+ G T L A + +VA LL YG + + T L AA+ GHA +V L
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 609 LLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTM-----LIEAAKGGH 663
LL + + ++G T L + GH VAD+L+ +G +D +T L A+ G+
Sbjct: 264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323
Query: 664 ANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTD 723
+V+ LL ++ V+AKT+ G + L A + GHTD
Sbjct: 324 IKLVKFLLQH-------------------------QADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 724 VADLLLSYGAN 734
+ LLL GA+
Sbjct: 359 IVTLLLKNGAS 369
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL A+ GHL +V+ LL GA + +T L A GHT+VA LL A +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
D+ T L AA+ GH N+V+LLL+ + + T G T L A GH + LL
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 646 GANL-----DNSTMLIEAAKGGHANVVQLLLD 672
A+ T L AAK G V +LLL+
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 75/181 (41%), Gaps = 35/181 (19%)
Query: 564 TALTYACENGHTDVADLLLSYGANLDNSTMLIE-----AAKGGHANVVQLLLDFPRSVHA 618
T L A GH + LL GA+ + S + +E AA+ GH V + LL V+A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTM-----LIEAAKGGHANVVQLLLDF 673
K + T L A GHT++ LLL AN + +T L AA+ GH V LL+
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE- 134
Query: 674 PRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
K++ T+ G T L A + G VA+LLL A
Sbjct: 135 ------------------------KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 734 N 734
+
Sbjct: 171 H 171
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL AA +G +E+V+LL+ GADVN + +G TPL A GH VV++LLE GA+V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
++NG TPL AA GH+ V K+LLE GA +N ++ + L LA GHL++V+ LL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 312 AGA 314
AGA
Sbjct: 123 AGA 125
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+G TPL A GH VV++LLE GA+V ++NG TPL AA GH+ V K+LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+N ++ + L LA GHL++V+ LL AGAD K T L A+ +GH+EV KL
Sbjct: 61 VNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 342 LLDSGA 347
LL++GA
Sbjct: 120 LLEAGA 125
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL AA+ GHLE+V+ LL++GA V+AK + G T L A NGH +V LLL GA++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ T L AA+ GH VV+LLL+ V+AK + G T L A NGH +V LLL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 646 GA 647
GA
Sbjct: 124 GA 125
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 561 TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRS 615
G T L A NGH +V LLL GA++ + T L AA+ GH VV+LLL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 616 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
V+AK + G T L A NGH +V LLL GA++ + T L AA+ GH VV+LL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 671 LD 672
L+
Sbjct: 121 LE 122
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 30/150 (20%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
+ T L AA+ GH VV+LLL+ V+AK + G T L A NGH +V LLL GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVH 703
+ + T L AA+ GH VV+LLL+ + V+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-------------------------GADVN 95
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGA 733
AK + G T L A NGH +V LLL GA
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 30/119 (25%)
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRS 676
G T L A NGH +V LLL GA+++ T L AA+ GH VV+LLL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 677 VIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ V+AK + G T L A NGH +V LLL GA++
Sbjct: 58 ----------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 94
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A +G+ VK L+ G V+ + +G + L A G+ E+ ++L++ A+V
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ G TPL AA G EIV+LLI+ GADVN + S G TPL YA GH+ +V++L+
Sbjct: 66 KDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
GA+V + +G TPL A G+ + K+L + G +
Sbjct: 125 KGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + V+ LI +GADVN S G TPL YA GH+ +V++L+ GA+V +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+G TPL AA GH + K+L+ GA +N ++ + + L A +GH ++V+ L+S G
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKG 126
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
AD + T L A G+ E+ KLL G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL AA G EIV+LLI+ GADVN + S G TPL YA GH+ +V++L+ GA+V
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 98
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ +G TPL AA GH + K+L+ GA +NT ++ + + L LA G+ ++V+ L
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGR-TPLDLAREHGNEEIVKLLEK 157
Query: 312 AG 313
G
Sbjct: 158 QG 159
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 12/155 (7%)
Query: 526 ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
ELG L+EAA+ G+ + V+ L+++GA V+A G T L YA + GH ++ LL+S G
Sbjct: 3 ELGKR--LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 586 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
A++ D T L AAK GH +V+LL+ V+AK G T L YA + GH ++
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 641 LLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
LL+S GA++ D T L A + G+ +V+LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G D L++NGA++ S TPL AA+EGH E+V+ L+ GA V+AK G T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 74
Query: 567 TYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
YA + GH ++ LL+S GA++ D T L AAK GH +V+LL+ V+
Sbjct: 75 HYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS 134
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLD 650
G T L A E+G+ ++ LL G L+
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G + VK L+++G V+ +G + L A G+ E+ ++L++ A+V + G
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL AA G EIV+LLI+ GADVN S G TPL A G+E +V++L + G +
Sbjct: 104 R-TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Query: 250 E 250
E
Sbjct: 163 E 163
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
LIEAA+ G+ + V+ L++ V+A G T L YA + GH ++ LL+S GA++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
D T L AAK GH +V+LL+ K + V+AK
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI-------------------------SKGADVNAKDSD 102
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L YA + GH ++ LL+S GA++
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLISKGADV 129
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA G+ K L+E GA +N ++ + + L A +GH ++V+ L+S GAD K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ T L A+ +GH E+ KLL+ GA D D R + + Y
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGA---------DVNAKDSDGR-TPLHY------- 109
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G + VK L+++G V+ + +G + L LA G E+ ++L
Sbjct: 110 -AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D G+ LL A AG + ++L+A A+V + G TPL AA G +EIV +L+ G
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAG 58
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
ADVN + G TPL A GH +V VLL+ GA+V +++G+TPL AA GH+ + +
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+LL+ GA +N ++F ++ LA +GH D+ L A
Sbjct: 119 VLLKAGADVNA-QDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA+EGHLE+V LL +GA V+AK + G T L A G
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Query: 574 HTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL GA++ D T L AA+ GH +V++LL V+A+ + G T
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 629 YACENGHTDVADLL 642
A GH D+A++L
Sbjct: 140 LAIREGHEDIAEVL 153
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 10/148 (6%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L+EAA+ G + VR L+ +GA V+AK + G T L A GH ++ ++LL GA++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
D T L AA+ GH +V++LL V+AK + G T L A GH ++ ++LL GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 648 NLD-----NSTMLIEAAKGGHANVVQLL 670
+++ T A + GH ++ ++L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + + L LA +GHL++V LL AGAD K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ +T L A+ +GH+E+ ++LL +GA V+A + + P L
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTP-----------------LH 106
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G ++ V+ LL G V+ G++ LA G+ ++A+VL
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 34/154 (22%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
D L+EAA+ G + V++L+ V+AK + G T L A GH ++ ++LL GA+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG-- 701
+ D T L AA+ GH +V++LL K+G
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLL---------------------------KAGAD 93
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
V+AK + G T L A GH ++ ++LL GA++
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 1/158 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A +G+ VK L+ G V+ + +G + L A G+ E+ ++L++ A+V
Sbjct: 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ G TPL AA +G E+V+LLI+ GADVN + S G TPL +A GH+ VV++L+
Sbjct: 66 KDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
GA+V + +G TPL A G+ V K+L + G +
Sbjct: 125 KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 1/153 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + V+ LI +GADVN S G TPL +A GH+ VV++L+ GA+V +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+G TPL AA GH V K+L+ GA +N ++ + + L A GH ++V+ L+S G
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKG 126
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
AD + T L A G+ EV KLL G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL AA +G E+V+LLI+ GADVN + S G TPL +A GH+ VV++L+ GA+V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 98
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ +G TPL AA GH V K+L+ GA +NT S+ + L LA G+ ++V+ L
Sbjct: 99 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 312 AG 313
G
Sbjct: 158 QG 159
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 12/155 (7%)
Query: 526 ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
ELG L+EAA+ G+ + V+ L+++GA V+A G T L +A ENGH +V LL+S G
Sbjct: 3 ELGKR--LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 586 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
A++ D T L AA+ GH VV+LL+ V+AK G T L +A ENGH +V
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 641 LLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
LL+S GA++ D T L A + G+ VV+LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G D L++NGA++ S TPL AA+ GH E+V+ L+ GA V+AK G T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 567 TYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
+A ENGH +V LL+S GA++ D T L AA+ GH VV+LL+ V+
Sbjct: 75 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS 134
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLD 650
G T L A E+G+ +V LL G L+
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
LIEAA+ G+ + V+ L++ V+A G T L +A ENGH +V LL+S GA++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
D T L AA+ GH VV+LL+ K + V+AK
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI-------------------------SKGADVNAKDSD 102
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L +A ENGH +V LL+S GA++
Sbjct: 103 GRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A +G + VK L+++G V+ +G + L A G+ E+ ++L++ A+V +
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
G TPL AA +G E+V+LLI+ GADVN S G TPL A G+E VV++L + G
Sbjct: 101 SDGR-TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Query: 247 ANVE 250
+E
Sbjct: 160 GWLE 163
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA G+ K L+E GA +N S+ + L A GH ++V+ L+S GAD K
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ T L A+ +GH EV KLL+ GA V+A P L
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP-----------------LH 108
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G + VK L+++G V+ + +G + L LA G E+ ++L
Sbjct: 109 HAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AAS+G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNATDNDG-YTPLHLAASNGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN +G TPL A A GH +V VLL+ GA+V ++ +GHTPL AA GH+ +
Sbjct: 70 GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + G TPL A + GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA+ GH+ + ++LL++GA +N + N+ + L LA GHL++V LL G
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA GHLE+V LL +GA V+A TG T L A G
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Query: 574 HTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL +GA++ D T L AAK GH +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + +G+TPL AAS GH+ + ++LL+ GA +N S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-S 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA GHL++V LL GAD ++ HT L A+ GH+E+ ++LL G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L+ +GA V+A G T L A NGH ++ ++LL GA+++ S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL V+A G T L A + GH ++ ++LL +GA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L+ V+A G T L A NGH ++ ++LL GA+++ S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL + V+A
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKH-------------------------GADVNAYDND 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANLR 736
G T L A + GH ++ ++LL +GA++
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLLKHGADVN 140
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + V+ L+ +GADVN S G TPL A GH+ VV++LL GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+G TPL AA GH V K+LL GA N ++ K + L LA GH ++V+ LLS G
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQG 126
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
AD + T L A G+ EV KLL G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A +G+ VK LL G V+ + +G++ L LA G+ E+ ++LL+ A+
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ G+ TPL AA +G E+V+LL++ GAD N + S G TPL A GH+ VV++LL
Sbjct: 66 KDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
GA+ + +G TPL A G+ V K+L + G +
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 86/155 (55%), Gaps = 12/155 (7%)
Query: 526 ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
ELG L+EAA+ G+ + V+ LL++GA V+A G T L A ENGH +V LLLS G
Sbjct: 3 ELGKR--LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 586 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
A+ D T L AA+ GH VV+LLL +AK G T L A ENGH +V
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 641 LLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
LLLS GA+ D T L A + G+ VV+LL
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G D LL+NGA++ S TPL AA+ GH E+V+ LL GA +AK G T L
Sbjct: 15 GNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPL 74
Query: 567 TYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
A ENGH +V LLLS GA+ D T L AA+ GH VV+LLL +
Sbjct: 75 HLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDS 134
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLD 650
G T L A E+G+ +V LL G L+
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 71/146 (48%), Gaps = 30/146 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
LIEAA+ G+ + V+ LL+ V+A G T L A ENGH +V LLLS GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
D T L AA+ GH VV+LLL QG + +AK
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLL-----------------------SQG--ADPNAKDSD 102
Query: 709 GDTALTYACENGHTDVADLLLSYGAN 734
G T L A ENGH +V LLLS GA+
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGAD 128
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G + VK LL++G + +G++ L LA G+ E+ ++LL+ A+ + G
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ TPL AA +G E+V+LL++ GAD N S G TPL A G+E VV++L + G +
Sbjct: 104 K-TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
Query: 250 E 250
E
Sbjct: 163 E 163
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA G+ K LLE GA +N ++ K + L LA GH ++V+ LLS GAD K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ T L A+ +GH EV KLLL GA P++ L
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGAD------------------PNAKDSDGKTPLH 108
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G + VK LL++G + + +G + L LA G E+ ++L
Sbjct: 109 LAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G+ TPL AA G +EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN G+TPL A GH +V VLL+ GA+V + G TPL AA AGH+ +
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+YGA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKYGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A G V+ L+ G V+ D G++ L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
G+ TPL AA G +EIV +L+ +GADVN + G TPL A GH +V VLL+
Sbjct: 76 ADKMGD-TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
GA+V ++ G T + G+ +A+IL
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA +GHLE+V LL GA V+A + GDT L A G
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG 91
Query: 574 HTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL GA+++ + T L AA GH +V++LL + V+A+ + G TA
Sbjct: 92 HLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A+ +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL V+A G T L A + GH ++ ++LL YGA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + K + L LA KGHL++V LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
T L A++ GH+E+ ++LL +GA V+A + F P L
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGA-DVNATDTYGFTP-----------------LH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSA 463
+D G+ LL A AG + ++L+A A+V G+ TPL AA G E V
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHL----EIVEV 65
Query: 464 YARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGA 523
+H GA +NA G L++ + LLKNGA
Sbjct: 66 LLKH--------------------GADVNA-ADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 524 NI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
++ + TPL AA GHLE+V LL GA V+A+ + G TA + +NG+ D+A++
Sbjct: 105 DVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 581 L 581
L
Sbjct: 165 L 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
A G D VR L++ GAD + D T L A++ GH+E+ ++LL GA +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA---- 76
Query: 357 DFFPNDKC-ERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLAC 415
DK + P ++ Y G ++ V+ LL G V+ T G + L LA
Sbjct: 77 -----DKMGDTPLHLAALY----------GHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Query: 416 SAGYYELAQVLLAMHANV 433
AG+ E+ +VLL A+V
Sbjct: 122 DAGHLEIVEVLLKYGADV 139
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 34/149 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A+ +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
T L AA GH +V++LL K+G V+A
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLL---------------------------KNGADVNATD 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
G T L A + GH ++ ++LL YGA++
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 26/175 (14%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A G V+ L+ G V+ D G++ L LA G+ E+ +VLL A+V
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G+ TPL AA G ++ EVL + + V+ T P
Sbjct: 77 DKMGD-TPLHLAALYGHLEIV---------EVLLKNGADVNA---------TDTYGFTP- 116
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
L A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 117 ------LHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 95/157 (60%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V + G TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADVNAADVVG-WTPLHLAAYWGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G+TPL A GH +V VLL+ GA+V ++NG TPL AA+ GH+ +
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+YGA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKYGADVNA-QDKFGKTAFDISINNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN G TPL A GH +V VLL+ GA+V ++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL+ GA +N ++ + L LA +GHL++V LL G
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-KDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLL 342
AD + TA + +G+ ++A++L
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ ++ TPL AA GHLE+V LL +GA V+A G T L A
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 570 CENGHTDVADLLLSYGANL----DNS-TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGD 624
GH ++ ++LL GA++ DN T L AA GH +V++LL + V+A+ + G
Sbjct: 88 AHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 625 TALTYACENGHTDVADLL 642
TA + NG+ D+A++L
Sbjct: 148 TAFDISINNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + G TPL AA GH+ + ++LL+ GA +N +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY- 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA + GHL++V LL GAD K D T L A+ GH+E+ ++LL G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A G T L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
ST L AA GH +V++LL V+AK G T L A GH ++ ++LL YGA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 34/149 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A G T L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
ST L AA GH +V++LL K+G V+AK
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLL---------------------------KNGADVNAKD 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
G T L A GH ++ ++LL YGA++
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADV 139
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
A G D VR L++ GAD T L A+ GH+E+ ++LL +GA V+AY
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAY--- 76
Query: 357 DFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS 416
S L A G ++ V+ LL G V+ D G + L LA +
Sbjct: 77 --------------DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAAN 122
Query: 417 AGYYELAQVLLAMHANV 433
G+ E+ +VLL A+V
Sbjct: 123 RGHLEIVEVLLKYGADV 139
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 81/215 (37%), Gaps = 61/215 (28%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
+D G+ LL A AG + ++L+A A+V + G TPL AA G ++
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADVNAADVVG-WTPLHLAAYWGHLEIV------ 63
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGR 147
EVL + + V+ A D + + A G ++ V+ LL G
Sbjct: 64 ---EVLLKNGADVN-AYDTLGSTPLHL---------------AAHFGHLEIVEVLLKNGA 104
Query: 148 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVR 207
V+ D G + L LA + G+ E+ +VLL
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLL------------------------------- 133
Query: 208 LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+GADVN Q G T + G+E + +L
Sbjct: 134 ---KYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 9 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 57
G ++ V+ LL G V+ D G + L LA + G+ E+ +VLL A+V
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + V+ L+ +GAD N S G TPL YA GH+ +V++LL GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+G TPL AA GH + K+LL GA N ++ + + L A GH ++V+ LLS G
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKG 126
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
AD + T L A G+ E+ KLL G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 88/158 (55%), Gaps = 1/158 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A +G+ VK LL G + + +G + L A G+ E+ ++LL+ A+
Sbjct: 6 KRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ G TPL AA +G EIV+LL++ GAD N + S G TPL YA GH+ +V++LL
Sbjct: 66 KDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
GA+ + +G TPL A G+ + K+L + G +
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 87/155 (56%), Gaps = 12/155 (7%)
Query: 526 ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
ELG L+EAA+ G+ + V+ LL++GA +A G T L YA ENGH ++ LLLS G
Sbjct: 3 ELGKR--LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 586 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
A+ D T L AA+ GH +V+LLL +AK G T L YA ENGH ++
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 120
Query: 641 LLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
LLLS GA+ D T L A + G+ +V+LL
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL AA +G EIV+LL++ GAD N + S G TPL YA GH+ +V++LL GA+
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ +G TPL AA GH + K+LL GA NT ++ + + L LA G+ ++V+ L
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR-TPLDLAREHGNEEIVKLLEK 157
Query: 312 AG 313
G
Sbjct: 158 QG 159
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G D LL+NGA+ S TPL AA+ GH E+V+ LL GA +AK G T L
Sbjct: 15 GNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
Query: 567 TYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
YA ENGH ++ LLLS GA+ D T L AA+ GH +V+LLL +
Sbjct: 75 HYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDS 134
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLD 650
G T L A E+G+ ++ LL G L+
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 71/146 (48%), Gaps = 30/146 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
LIEAA+ G+ + V+ LL+ +A G T L YA ENGH ++ LLLS GA+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
D T L AA+ GH +V+LLL K + +AK
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL-------------------------SKGADPNAKDSD 102
Query: 709 GDTALTYACENGHTDVADLLLSYGAN 734
G T L YA ENGH ++ LLLS GA+
Sbjct: 103 GRTPLHYAAENGHKEIVKLLLSKGAD 128
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G + VK LL++G + +G + L A G+ E+ ++LL+ A+ + G
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL AA +G EIV+LL++ GAD N S G TPL A G+E +V++L + G +
Sbjct: 104 R-TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Query: 250 E 250
E
Sbjct: 163 E 163
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA G+ K LLE GA N ++ + + L A GH ++V+ LLS GAD K
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ T L A+ +GH E+ KLLL GA P++ L
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGAD------------------PNAKDSDGRTPLH 108
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G + VK LL++G + + +G + L LA G E+ ++L
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D G+ LL A AG + ++L+A A+V + G TPL AA G +EIV +L+ G
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAG 58
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
ADVN + G TPL A GH +V VLL+ GA+V +++G+TPL AA GH+ + +
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+LL+ GA +N ++F ++ LA G+ D+ L A
Sbjct: 119 VLLKAGADVNA-QDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA+EGHLE+V LL +GA V+AK + G T L A G
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Query: 574 HTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL GA++ D T L AA+ GH +V++LL V+A+ + G T
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 629 YACENGHTDVADLL 642
A +NG+ D+A++L
Sbjct: 140 LAIDNGNEDIAEVL 153
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L+EAA+ G + VR L+ +GA V+AK + G T L A GH ++ ++LL GA++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
D T L AA+ GH +V++LL V+AK + G T L A GH ++ ++LL GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 648 NLD 650
+++
Sbjct: 126 DVN 128
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + + L LA +GHL++V LL AGAD K
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ +T L A+ +GH+E+ ++LL +GA V+A + + P L
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTP-----------------LH 106
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G ++ V+ LL G V+ G++ LA G ++A+VL
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 34/154 (22%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
D L+EAA+ G + V++L+ V+AK + G T L A GH ++ ++LL GA+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG-- 701
+ D T L AA+ GH +V++LL K+G
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLL---------------------------KAGAD 93
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
V+AK + G T L A GH ++ ++LL GA++
Sbjct: 94 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V + G TPL AA G +EIV +L+
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKA 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G TPL A GH +V VLL+ GA+V +++G+TPL AA GH+ +
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+ GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKAGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 80/134 (59%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA+EGHLE+V LL +GA V+AK + G T L A G
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 574 HTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL GA++ D T L AA+ GH +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L+EAA+ G + VR L+ +GA V+AK + G T L A GH ++ ++LL GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
D T L AA+ GH +V++LL V+AK + G T L A GH ++ ++LL GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + + L LA +GHL++V LL AGAD K
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ +T L A+ +GH+E+ ++LL +GA V+A + + P L
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGYTP-----------------LH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A +G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 34/154 (22%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
D L+EAA+ G + V++L+ V+AK + G T L A GH ++ ++LL GA+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG-- 701
+ D T L AA+ GH +V++LL K+G
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLL---------------------------KAGAD 105
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
V+AK + G T L A GH ++ ++LL GA++
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V R G TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTG-WTPLHLAAHFGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + S G TPL A GH +V VLL+ GA+V + +G TPL AA GH+ +
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+ GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + +G TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL+ GA +N S+ + L LA +GHL++V LL G
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ + TPL AA GHLE+V LL +GA V+AK G T L A
Sbjct: 28 DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLA 87
Query: 570 CENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGD 624
GH ++ ++LL GA+++ S T L AAK GH +V++LL V+A+ + G
Sbjct: 88 ARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 625 TALTYACENGHTDVADLL 642
TA + +NG+ D+A++L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + G TPL AA GH+ + ++LL+ GA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-K 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA +GHL++V LL GAD T L A+ GH+E+ ++LL +G
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L+ +GA V+A+ TG T L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA+ GH +V++LL V+A G T L A + GH ++ ++LL GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 30/181 (16%)
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSA 463
+D G+ LL A AG + ++L+A A+V R G TPL AA G E V
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNARDFTG-WTPLHLAAHFGHL----EIVE- 64
Query: 464 YARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXXXXXCCGGFLDVADFLLKNGA 523
V+L GA +NA G L++ + LLKNGA
Sbjct: 65 -------------------VLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 524 NIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
++ S TPL AA+ GHLE+V LL +GA V+A+ + G TA + +NG+ D+A++
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 581 L 581
L
Sbjct: 165 L 165
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 34/149 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L+ V+A+ TG T L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
T L AA+ GH +V++LL K+G V+A
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLL---------------------------KNGADVNASD 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
G T L A + GH ++ ++LL GA++
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G+ TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGD-TPLHLAARVGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN SG+TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+YGA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 165
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA+ GHLE+V LL +GA V+A +G T L A + G
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 574 HTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL YGA+++ ST L AA GH +V++LL + V+A+ + G TA
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 74/123 (60%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A+ GDT L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
ST L AAK GH +V++LL + V+A G T L A + GH ++ ++LL YGA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A+ GDT L A GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
ST L AAK GH +V++LL + + V+A
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKY-------------------------GADVNADDTI 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A + GH ++ ++LL YGA++
Sbjct: 113 GSTPLHLAADTGHLEIVEVLLKYGADV 139
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + + ++ L LA GHL++V LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
T L A+ GH+E+ ++LL GA D +D S L
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGA---------DVNADDTIG---------STPLH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GAD N G TPL A A GH +V VLL GA+V +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
NG TPL AAS GH+ + ++LL+YGA +N + + L LA Y GHL++V LL G
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNA-KDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 125 ADV-NAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D G+ LL A AG + ++L+A A+ G TPL AA+ G +EIV +L+ +G
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADANAYDHYGR-TPLHMAAAVGHLEIVEVLLRNG 58
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
ADVN ++G TPL A + GH +V VLL+ GA+V + G TPL AA GH+ + +
Sbjct: 59 ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 119 VLLKHGADVNA-QDKFGKTAFDISIDIGNEDLAEIL 153
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 517 FLLKNGAN---IELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA+ + TPL AA GHLE+V LL +GA V+A G T L A G
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 574 HTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL YGA+++ T L AA GH +V++LL V+A+ + G TA
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFD 139
Query: 629 YACENGHTDVADLL 642
+ + G+ D+A++L
Sbjct: 140 ISIDIGNEDLAEIL 153
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+ ++ G TPL AA+ GH+ + ++LL GA +N
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-V 64
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA GHL++V LL GAD K T L A+ GH+E+ ++LL G
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 347 A 347
A
Sbjct: 125 A 125
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA +A G T L A GH ++ ++LL GA+++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
+T L AA GH +V++LL + V+AK TG T L A GH ++ ++LL +GA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 648 NLD 650
+++
Sbjct: 126 DVN 128
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
L+EAA+ G + V++L+ +A G T L A GH ++ ++LL GA++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
+ +T L AA GH +V++LL + + V+AK T
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKY-------------------------GADVNAKDAT 100
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A GH ++ ++LL +GA++
Sbjct: 101 GITPLYLAAYWGHLEIVEVLLKHGADV 127
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V +G TPL AA G EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQG-STPLHLAAWIGHPEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + + G TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A G V+ L+ G V+ D+G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
R G TPL AA +G +EIV +L+ +GADVN Q + G TPL A GH +V VLL+
Sbjct: 76 RDTDG-WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
GA+V ++ G T + G+ +A+IL
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + STPL AA GH E+V LL GA V+A+ G T L A +NG
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNG 91
Query: 574 HTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL YGA+++ T L AA GH +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L+EAA+ G + VR L+ +GA V+A G T L A GH ++ ++LL +GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
D T L AA GH +V++LL + V+A+ G T L A + GH ++ ++LL +GA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 56/206 (27%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ L++A G V+ L+ G V+ D+G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHX 495
R G TPL AA +G E V V+L GA +NA
Sbjct: 76 RDTDG-WTPLHLAADNGHL----EIV--------------------EVLLKYGADVNAQD 110
Query: 496 XXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQV 555
TPL AA GHLE+V LL GA V
Sbjct: 111 AY-------------------------------GLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 556 HAKTQTGDTALTYACENGHTDVADLL 581
+A+ + G TA + +NG+ D+A++L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N H ++ + L LA + GH ++V LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+ T L A+ +GH+E+ ++LL GA V+A + P L
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGA-DVNAQDAYGLTP-----------------LH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
L+EAA+ G + V++L+ V+A G T L A GH ++ ++LL +GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
D T L AA GH +V++LL + + V+A+
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKY-------------------------GADVNAQDAY 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A + GH ++ ++LL +GA++
Sbjct: 113 GLTPLHLAADRGHLEIVEVLLKHGADV 139
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A G V+ L+ G V+ D+G + L LA G+ E+ +VLL A+V R
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G TPL LA +G L EVL + + V+ + A LT +
Sbjct: 77 DTDG-WTPL---------HLAADNGHLEIVEVLLKYGADVNA---QDAYGLTPLH----- 118
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 --------LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNASDHVG-WTPLHLAAYFGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN S G TPL A GH VV VLL+ GA+V ++ NG TPL AA+ GH+ +
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ TPL AA GHLE+V LL +GA V+A G T L A + G
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 574 HTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H +V ++LL GA+++ + T L AA GH +V++LL V+A+ + G TA
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA--NLDN 590
L+EAA+ G + VR L+ +GA V+A G T L A GH ++ ++LL GA N D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 591 S---TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
S T L AA GH VV++LL V+A G T L A GH ++ ++LL +GA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N S+ + L LA Y GHL++V LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
T L A+ GH+EV ++LL +GA V+A + F P L
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGA-DVNANDHNGFTP-----------------LH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A + G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 34/150 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA--NLDN 651
L+EAA+ G + V++L+ V+A G T L A GH ++ ++LL GA N D+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 652 S---TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
S T L AA GH VV++LL K+G V+A
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLL---------------------------KNGADVNAND 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANLR 736
G T L A GH ++ ++LL +GA++
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA +G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGH-TPLHLAAKTGHLEIVEVLLKY 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+YGA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKYGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN G+TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL++GA +N E + L LA Y GHL++V LL G
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE-GFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + GHTPL AA GH+ + ++LL+YGA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
N + + L LA GHL++V LL GAD K E T L A+ DGH+E+ ++LL G
Sbjct: 78 N-YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ + TPL AA+ GHLE+V LL GA V+A G T L A
Sbjct: 28 DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 570 CENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGD 624
+NGH ++ ++LL +GA+++ T L AA GH +V++LL + V+A+ + G
Sbjct: 88 ADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 625 TALTYACENGHTDVADLL 642
TA + +NG+ D+A++L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---D 589
L+EAA+ G + VR L+ +GA V+A G T L A + GH ++ ++LL YGA++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 590 N--STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
N +T L AA GH +V++LL V+AK G T L A +GH ++ ++LL YGA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---D 650
L+EAA+ G + V++L+ V+A G T L A + GH ++ ++LL YGA++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 651 N--STMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
N +T L AA GH +V++LL + V+AK
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLK-------------------------HGADVNAKDYE 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A +GH ++ ++LL YGA++
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKYGADV 139
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA +G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADVNAEDASG-WTPLHLAAFNGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN +G TPL A GH +V VLL+ GA+V ++ GHTPL AA GH+ +
Sbjct: 70 GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+ GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKNGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + +SG TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL+ GA +N + E + L LA GHL++V LL G
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + +G TPL AA GH+ + ++LL+ GA +N
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-V 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA GHL++V LL GAD E HT L A+M GH+E+ ++LL +G
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ + TPL AA GHLE+V LL +GA V+A G T L A
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 570 CENGHTDVADLLLSYGANLDNSTM-----LIEAAKGGHANVVQLLLDFPRSVHAKTQTGD 624
GH ++ ++LL GA+++ + M L AA GH +V++LL V+A+ + G
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 625 TALTYACENGHTDVADLL 642
TA + +NG+ D+A++L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A+ +G T L A NGH ++ ++LL GA+++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL V+A G T L A GH ++ ++LL GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
A G D VR L++ GAD + T L A+ +GH+E+ ++LL +GA
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------- 73
Query: 357 DFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS 416
+++ + L A G ++ V+ LL G V+ EG + L LA
Sbjct: 74 -----------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 417 AGYYELAQVLLAMHANV 433
G+ E+ +VLL A+V
Sbjct: 123 FGHLEIVEVLLKNGADV 139
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 34/149 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A+ +G T L A NGH ++ ++LL GA+++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
T L AA GH +V++LL K+G V+A
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLL---------------------------KNGADVNAND 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
G T L A GH ++ ++LL GA++
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 61/215 (28%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
+D G+ LL A AG + ++L+A A+V G TPL LA +G L
Sbjct: 12 SDLGKKLLE-AARAGRDDEVRILMANGADVNAEDASG-WTPL---------HLAAFNGHL 60
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGR 147
EVL + + V+ A+D A R+ A G ++ V+ LL G
Sbjct: 61 EIVEVLLKNGADVN-AVDHAGMTPLRL---------------AALFGHLEIVEVLLKNGA 104
Query: 148 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVR 207
V+ EG + L LA G+ E+ +VLL
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLL------------------------------- 133
Query: 208 LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+GADVN Q G T + G+E + +L
Sbjct: 134 ---KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 9 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 57
G ++ V+ LL G V+ EG + L LA G+ E+ +VLL A+V
Sbjct: 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA SG +EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTG-LTPLHLAAVSGHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADV+ G TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
++LL+YGA +N ++F ++A ++ G+ D+ +
Sbjct: 130 EVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAK 163
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L+ +GA V+A TG T L A +GH ++ ++LL +GA++D +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL + V+A TG T L A + GH ++ ++LL YGA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA GHLE+V LL GA V A G T L A G
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 574 HTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL YGA+++ ST L AA GH +V++LL + V+A+ + G TA
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVA 639
+ +NG+ D+A
Sbjct: 152 ISIDNGNEDLA 162
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK GA++ ++ STPL AA EGHLE+V LL GA V+A+ + G TA
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 567 TYACENGHTDVA 578
+ +NG+ D+A
Sbjct: 151 DISIDNGNEDLA 162
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L+ V+A TG T L A +GH ++ ++LL +GA++D +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL + + V+A T
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKY-------------------------GADVNAFDMT 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A + GH ++ ++LL YGA++
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYGADV 139
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N N + L LA GHL++V LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
T L A+M GH+E+ ++LL GA V+A+ T S L
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAF-----------------DMTGSTPLH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQ 424
A +G ++ V+ LL G V+ G++ ++ G +LA+
Sbjct: 119 LAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL ++G +EI+ +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNANDWFG-ITPLHLVVNNGHLEIIEVLLKY 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
ADVN SG TPL A GH +V VLL+ GA+V + G+TPL AA GH+ +
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL+YGA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN G TPL GH ++ VLL+ A+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
++G TPL AA GH+ + ++LL+YGA +N + + L LA GHL++V LL G
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 314 ADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
AD + D+ + S+D G+ ++A++L
Sbjct: 137 ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ + TPL GHLE++ LL A V+A ++G T L A
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 570 CENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGD 624
GH ++ ++LL YGA+++ T L AA+ GH +V++LL + V+A+ + G
Sbjct: 88 AYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 625 TALTYACENGHTDVADLL 642
TA + +NG+ D+A++L
Sbjct: 148 TAFDISIDNGNEDLAEIL 165
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G TPL + GH+ + ++LL+Y A +N S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-S 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
++ + L LA Y+GHL++V LL GAD + +T L A+ DGH+E+ ++LL G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L+ +GA V+A G T L NGH ++ ++LL Y A+++ S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL + V+A G T L A E+GH ++ ++LL YGA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK GA++ + TPL AA++GHLE+V LL GA V+A+ + G TA
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 30/147 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L+ V+A G T L NGH ++ ++LL Y A+++ S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL + + V+A
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKY-------------------------GADVNAMDYQ 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A E+GH ++ ++LL YGA++
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKYGADV 139
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA+ G +EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNATDASG-LTPLHLAATYGHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN G+TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN +SG TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL++GA +N + + ++ L LA GHL++V LL G
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 314 AD 315
AD
Sbjct: 137 AD 138
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA GHLE+V LL GA V+A G T L A G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 574 HTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL +GA+++ T L AA GH +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
ST L AA GH +V++LL V+A GDT L A GH ++ ++LL +GA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + +G TPL AA+ GH+ + ++LL++GA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-I 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA GHL++V LL GAD T L A++ GH+E+ ++LL G
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
ST L AA GH +V++LL + V+A
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLK-------------------------HGADVNAVDTW 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANLR 736
GDT L A GH ++ ++LL +GA++
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA+ G +EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNATDASG-LTPLHLAATYGHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN G+TPL A GH +V VLL+ GA+V + G TPL AA GH+ +
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN +SG TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G TPL AA GH+ + ++LL++GA +N + + ++ L LA GHL++V LL G
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 314 AD 315
AD
Sbjct: 137 AD 138
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA GHLE+V LL GA V+A G T L A G
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 574 HTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL +GA+++ T L AA GH +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
ST L AA GH +V++LL V+A GDT L A GH ++ ++LL +GA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V + +G TPL AA+ GH+ + ++LL++GA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-I 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA GHL++V LL GAD T L A++ GH+E+ ++LL G
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 347 A 347
A
Sbjct: 137 A 137
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 30/148 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A +G T L A GH ++ ++LL +GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
ST L AA GH +V++LL + V+A
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLK-------------------------HGADVNAVDTW 112
Query: 709 GDTALTYACENGHTDVADLLLSYGANLR 736
GDT L A GH ++ ++LL +GA++
Sbjct: 113 GDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G LL A AG + ++L+A A+V G TPL AA SG +EIV +L+ H
Sbjct: 12 SDLGRKLLE-AARAGQDDEVRILMANGADVNAADNTG-TTPLHLAAYSGHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADV+ G TPL A GH +V VLL+ GA+V + +G TPL AA G++ +
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 130 EVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ +TPL AA GHLE+V LL GA V A G T L A G
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG 91
Query: 574 HTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL GA++ D T L AAK G+ +V++LL V+A+ + G TA
Sbjct: 92 HLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFD 151
Query: 629 YACENGHTDVADLL 642
+ +NG+ D+A++L
Sbjct: 152 ISIDNGNEDLAEIL 165
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L+ +GA V+A TG T L A +GH ++ ++LL +GA++D S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL V+A G T L A + G+ ++ ++LL +GA
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 648 NLD 650
+++
Sbjct: 138 DVN 140
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLKNGA++ S TPL AA+ G+LE+V LL GA V+A+ + G TA
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 151 DISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N N + L LA Y GHL++V LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+T L A+ GH+E+ ++LL +GA V+A P L
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGA-DVNAMDSDGMTP-----------------LH 118
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 119 LAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 34/149 (22%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L+ V+A TG T L A +GH ++ ++LL +GA++D S
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
T L AA GH +V++LL K+G V+A
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLL---------------------------KNGADVNAMD 110
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
G T L A + G+ ++ ++LL +GA++
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 18/137 (13%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
A G D VR L++ GAD + T L A+ GH+E+ ++LL GA
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-------- 72
Query: 357 DFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS 416
+ YT L A G ++ V+ LL G V+ +G + L LA
Sbjct: 73 -------VDASDVFGYT---PLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
Query: 417 AGYYELAQVLLAMHANV 433
GY E+ +VLL A+V
Sbjct: 123 WGYLEIVEVLLKHGADV 139
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 34/109 (31%)
Query: 134 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 193
G ++ V+ LL G V+ +G + L LA GY E+ +VLL
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL----------------- 133
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
HGADVN Q G T + G+E + +L
Sbjct: 134 -----------------KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 9 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 57
G ++ V+ LL G V+ +G + L LA GY E+ +VLL A+V
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANV---EDRGIKGECTPLMEAASSGFIEIVRLLI 210
D G+ LL A +AG + ++L+A A+V +D G+ TPL AA++G +EIV +L+
Sbjct: 5 DLGKKLLE-AAAAGQDDEVRILMANGADVNATDDNGL----TPLHLAAANGQLEIVEVLL 59
Query: 211 NHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVG 270
+GADVN S+G TPL A GH +V VLL+ GA+V ++ G TPL AA +G +
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 271 VAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ ++LL++GA +N + +A ++ +G D+ L
Sbjct: 120 IVEVLLKHGADVNAQ-DALGLTAFDISINQGQEDLAEIL 157
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A + G V+ L+ G V+ T D G + L LA + G E+ +VLL A+V
Sbjct: 8 KKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
G TPL AA G +EIV +L+ HGADVN +G TPL A G +V VLL+
Sbjct: 68 SDSAG-ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
GA+V + G T + + G +A+IL
Sbjct: 127 HGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A A G + VR+L+ GA+V ++NG TPL AA+ G + + ++LL+ GA +N S
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-S 68
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ + L LA Y GHL++V LL GAD T L A++ G +E+ ++LL G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 347 A 347
A
Sbjct: 129 A 129
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA G LE+V LL +GA V+A G T L A +G
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 574 HTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT 628
H ++ ++LL +GA+++ T L AA G +V++LL V+A+ G TA
Sbjct: 84 HLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFD 143
Query: 629 YACENGHTDVADLL 642
+ G D+A++L
Sbjct: 144 ISINQGQEDLAEIL 157
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA G + VR L+ +GA V+A G T L A NG ++ ++LL GA+++ S
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH +V++LL V+A + G T L A +G ++ ++LL +GA
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 648 NLD 650
+++
Sbjct: 130 DVN 132
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 507 CCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
G L++ + LLKNGA++ S TPL AA +GHLE+V LL GA V+A + G
Sbjct: 47 AANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW 106
Query: 564 TALTYACENGHTDVADLLLSYGANLD 589
T L A +G ++ ++LL +GA+++
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGADVN 132
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 79/206 (38%), Gaps = 56/206 (27%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ L++A + G V+ L+ G V+ T D G + L LA + G E+ +VLL A+V
Sbjct: 8 KKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHX 495
G TPL AA G E V +H GA +NA+
Sbjct: 68 SDSAG-ITPLHLAAYDGHL----EIVEVLLKH--------------------GADVNAY- 101
Query: 496 XXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQV 555
+ TPL AA G LE+V LL GA V
Sbjct: 102 ------------------------------DRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 556 HAKTQTGDTALTYACENGHTDVADLL 581
+A+ G TA + G D+A++L
Sbjct: 132 NAQDALGLTAFDISINQGQEDLAEIL 157
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 32/159 (20%)
Query: 583 SYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
++G +L L+EAA G + V++L+ V+A G T L A NG ++ ++L
Sbjct: 1 AFGQDL--GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVL 58
Query: 643 LSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQG 697
L GA+++ S T L AA GH +V++LL
Sbjct: 59 LKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK------------------------- 93
Query: 698 KKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLR 736
+ V+A + G T L A +G ++ ++LL +GA++
Sbjct: 94 HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A + G V+ L+ G V+ T D G + L LA + G E+ +VLL A+V
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G TPL LA DG L EVL + + V+ A D A +
Sbjct: 69 DSAG-ITPL---------HLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHL------ 111
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
A G ++ V+ LL G V+ G + ++ + G +LA++L
Sbjct: 112 ---------AALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 60/89 (67%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL AA +G +E+V+LL+ GADVN + +G TPL A GH VV++LLE GA+V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
++NG TPL AA GH+ V K+LLE GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+G TPL A GH VV++LLE GA+V ++NG TPL AA GH+ V K+LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+N ++ + L LA GHL++V+ LL AGA
Sbjct: 61 VNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
NG TPL AA GH+ V K+LLE GA +N ++ + L LA GHL++V+ LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
D K T L A+ +GH+EV KLLL++GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL AA+ GHLE+V+ LL++GA V+AK + G T L A NGH +V LLL GA++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLD 611
+ T L AA+ GH VV+LLL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L+V LL+ GA++ + TPL AA+ GHLE+V+ LL++GA V+AK + G T L
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 567 TYACENGHTDVADLLLSYGA 586
A NGH +V LLL GA
Sbjct: 73 HLAARNGHLEVVKLLLEAGA 92
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 561 TGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRS 615
G T L A NGH +V LLL GA+++ T L AA+ GH VV+LLL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 616 VHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
V+AK + G T L A NGH +V LLL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
+ T L AA+ GH VV+LLL+ V+AK + G T L A NGH +V LLL GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLD 672
+ + T L AA+ GH VV+LLL+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 30/117 (25%)
Query: 622 TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRS 676
G T L A NGH +V LLL GA++ + T L AA+ GH VV+LLL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 677 VIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
+ V+AK + G T L A NGH +V LLL GA
Sbjct: 57 ---------------------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 25/86 (29%)
Query: 650 DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTG 709
+ T L AA+ GH VV+LLL+ + V+AK + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE-------------------------AGADVNAKDKNG 35
Query: 710 DTALTYACENGHTDVADLLLSYGANL 735
T L A NGH +V LLL GA++
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGADV 61
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 137 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 196
K + K+ G V+ T+ +G S L +A G +L +LL AN R + PL
Sbjct: 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN-ADQAVPLHL 125
Query: 197 AASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENG 256
A G ++V+ L++ A N + SGNTPL+YAC+GGH +V +LL+ GA++ N G
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 257 HTPLMEAASAGHVGVAKILLEYGAGINT 284
+T L EA HV V ++LL +GA +
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHGASVQV 213
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLA-------------CSAGYYELA 172
L++A +DGD++ V+ LL E ++ E +S A C+ LA
Sbjct: 14 KLLRAVADGDLEMVRYLL---EWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLA 70
Query: 173 QVL---LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMY 229
+V L ++ +D +PL AA G +++ LL+ HGA+ +++ PL
Sbjct: 71 KVPASGLGVNVTSQDGS-----SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL 125
Query: 230 ACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEF 289
AC GH VV+ LL+ A + +G+TPL+ A S GH + +LL++GA IN SN
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA-SNNK 184
Query: 290 KESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
+AL A + H+ +V LL GA + TA+
Sbjct: 185 GNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 82/151 (54%), Gaps = 9/151 (5%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G D+ LLK+GAN + PL A Q+GH ++V+ LLDS A+ + K +G+T L
Sbjct: 97 GRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL 156
Query: 567 TYACENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
YAC GH ++ LLL +GA+++ S T L EA H VV+LLL SV +
Sbjct: 157 IYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Query: 622 TGDTALTYACENGHT-DVADLLLSYGANLDN 651
TA+ A +N ++ ++ S A+LD+
Sbjct: 217 RQRTAVDCAEQNSKIMELLQVVPSCVASLDD 247
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 83/191 (43%), Gaps = 52/191 (27%)
Query: 533 LMEAAQEGHLELVRYLLD------------------------------------------ 550
L+ A +G LE+VRYLL+
Sbjct: 15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74
Query: 551 SGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANV 605
SG V+ +Q G + L A +G D+ LLL +GAN D + L A + GH V
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 606 VQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS-----TMLIEAAK 660
V+ LLD + K +G+T L YAC GH ++ LLL +GA+++ S T L EA
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 661 GGHANVVQLLL 671
H VV+LLL
Sbjct: 195 EKHVFVVELLL 205
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA--- 586
S+PL AA G +L+ LL GA A+ L AC+ GH V LL A
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 587 --NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
+L +T LI A GGH +V LLL S++A G+TAL A H V +LLL
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL 206
Query: 645 YGANL 649
+GA++
Sbjct: 207 HGASV 211
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 43/270 (15%)
Query: 327 LMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA--CSD 384
L+ A DG +E+ + LL+ + D D + S+ + L Q C+
Sbjct: 15 LLRAVADGDLEMVRYLLE--------WTEEDL--EDAEDTVSAADPEFCHPLCQCPKCAP 64
Query: 385 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
K + K+ G V+ T+ +G S L +A G +L +LL AN R + P
Sbjct: 65 AQ-KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN-ADQAVP 122
Query: 445 LMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXXX 504
L A G + V + PN K ++G + LI
Sbjct: 123 LHLACQQGH----FQVVKCLLDSNAKPNKKDLSG---NTPLI------------------ 157
Query: 505 XXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQT 561
C GG ++ LL++GA+I +T L EA E H+ +V LL GA V +
Sbjct: 158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR 217
Query: 562 GDTALTYACENGHT-DVADLLLSYGANLDN 590
TA+ A +N ++ ++ S A+LD+
Sbjct: 218 QRTAVDCAEQNSKIMELLQVVPSCVASLDD 247
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G + VK LL ++ G + L ACS G++EL +LL A++ KG
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 65 ECTPLMEA 72
T L EA
Sbjct: 186 N-TALHEA 192
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 35 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKL 80
L LAC G++++ + LL +A + + G TPL+ A S G +L
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGN-TPLIYACSGGHHEL 167
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 121/294 (41%), Gaps = 40/294 (13%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA 214
E LL A +L Q LL ANV + +G TPL A +IV LL+ HGA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKI 274
D + +G TP + A G ++++ L GA+V + + G T MEAA G V K
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 275 LLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDG 334
L + GA +N DQE TALM+A+ G
Sbjct: 124 LYKRGANVNLRR------------------------KTKEDQERLRKGGATALMDAAEKG 159
Query: 335 HVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLL 394
HVEV K+LLD V+A D R + I S D DV+ + LL
Sbjct: 160 HVEVLKILLDEMGADVNAC--------DNMGRNALIHALLS------SDDSDVEAITHLL 205
Query: 395 TE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAM-HANVEDRGIKGECTPLM 446
+ G V+ + G++ L LA + L Q LL H + D G+ L+
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 120/282 (42%), Gaps = 42/282 (14%)
Query: 406 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
E LL A +L Q LL ANV + +G TPL A R+ + V
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLL 59
Query: 466 RHDFFPNDKSVNG--------LQASVILIP-----GAKINAHXXXXXXXXXXXXCCGGFL 512
RH P + NG + SV L+ GA +N G +
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKV 118
Query: 513 DVADFLLKNGANIEL-------------GASTPLMEAAQEGHLELVRYLLDS-GAQVHAK 558
FL K GAN+ L G +T LM+AA++GH+E+++ LLD GA V+A
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 559 TQTGDTALTYA-CENGHTDV---ADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLL 609
G AL +A + +DV LLL +GA+++ T LI A + H +VQ L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 610 LDFPR-SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
L+ ++ G TAL A E +A+LL GA+ D
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGD-TALTYACENGHTDVADLLLSYGAN---- 587
L++A Q ++LV+ LL+ GA V+ + + G T L A + D+ +LLL +GA+
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 588 -LDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ +T + AA G +++L L V+ G TA A G L G
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 647 ANLD---------------NSTMLIEAAKGGHANVVQLLLD 672
AN++ +T L++AA+ GH V+++LLD
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 123/294 (41%), Gaps = 40/294 (13%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA 214
E LL A +L Q LL ANV + +G TPL A +IV LL+ HGA
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKI 274
D + +G TP + A G ++++ L GA+V + + G T MEAA G V K
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 275 LLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDG 334
L + GA +N DQE TALM+A+ G
Sbjct: 144 LYKRGANVNLRR------------------------KTKEDQERLRKGGATALMDAAEKG 179
Query: 335 HVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLL 394
HVEV K+LLD V+A C+ + ++ + + D DV+ + LL
Sbjct: 180 HVEVLKILLDEMGADVNA-----------CDNMGRNALIHA---LLSSDDSDVEAITHLL 225
Query: 395 TE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAM-HANVEDRGIKGECTPLM 446
+ G V+ + G++ L LA + L Q LL H + D G+ L+
Sbjct: 226 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 279
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 132/303 (43%), Gaps = 42/303 (13%)
Query: 406 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
E LL A +L Q LL ANV + +G TPL A R+ + V
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLL 79
Query: 466 RHDFFPNDKSVNG--------LQASVILIP-----GAKINAHXXXXXXXXXXXXCCGGFL 512
RH P + NG + SV L+ GA +N G +
Sbjct: 80 RHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKV 138
Query: 513 DVADFLLKNGANIEL-------------GASTPLMEAAQEGHLELVRYLLDS-GAQVHAK 558
FL K GAN+ L G +T LM+AA++GH+E+++ LLD GA V+A
Sbjct: 139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 198
Query: 559 TQTGDTALTYA-CENGHTDV---ADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLL 609
G AL +A + +DV LLL +GA+++ T LI A + H +VQ L
Sbjct: 199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258
Query: 610 LDFPR-SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQ 668
L+ ++ G TAL A E +A+LL GA+ D +++ A + ++V+
Sbjct: 259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVK 318
Query: 669 LLL 671
+LL
Sbjct: 319 VLL 321
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGD-TALTYACENGHTDVADLLLSYGAN---- 587
L++A Q ++LV+ LL+ GA V+ + + G T L A + D+ +LLL +GA+
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 588 -LDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ +T I AA G +++L L V+ G TA A G L G
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 647 ANLD---------------NSTMLIEAAKGGHANVVQLLLD 672
AN++ +T L++AA+ GH V+++LLD
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 189
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 6/157 (3%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE-CGANVE 250
TPL A + IEI + LI+ GAD+N Q+S ++P +YA A G ++ +L+ ++
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLAC-----YKGHLDM 305
HN G L+ AA GH+ K+LLE G N+F +AL A + + D+
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
V+ L+ GADQ K + TA+ A+ G+ E++K+L
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 10/171 (5%)
Query: 190 ECTPLMEAASSGFIEIVR-LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGAN 248
E L+EAA+ + V+ +L + V+ + GNTPL A + + L++ GA+
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGA-GINTHSNEFKESALTLACYKGHLDMVR 307
+ N +P + A + G + +L++ +N H N + +AL A KGH+D V+
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVK 123
Query: 308 FLLSAG-ADQEHKTDEMHTALMEAS--MDG---HVEVAKLLLDSGA-QSVS 351
LL G D + + D +TAL+EA +G + ++ KLL+++GA QS+
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 15/149 (10%)
Query: 512 LDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTALT 567
+++A L+ GA+I L S +P + A +G E++ Y+L + ++ + G AL
Sbjct: 52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI 111
Query: 568 YACENGHTDVADLLLSYG---ANLDNS---TMLIEAA---KGG--HANVVQLLLDFPRSV 616
A E GH D LLL G + N T LIEA +G + ++V+LL++
Sbjct: 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ 171
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSY 645
K +G TA+ YA + G+T+++ +L Y
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 36/203 (17%)
Query: 236 EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALT 295
+ V +L + V++ + G+TPL A + +AK L++ GA IN N +S
Sbjct: 19 KKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYL 77
Query: 296 LACYKGHLDMVRFLLSAGADQEHKTDEMH-------TALMEASMDGHVEVAKLLLDSGAQ 348
A +G +++ ++L +H T +++ AL+ A+ GH++ KLLL+ G +
Sbjct: 78 YAGAQGRTEILAYML------KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131
Query: 349 SVSAYARHDFFPNDKCERPSSISYTYSRSLVQAC--SDGD--VKTVKKLLTEGRSVHETT 404
+ F ND YT +L++A +G+ + + KLL E +
Sbjct: 132 DID-------FQND-------FGYT---ALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174
Query: 405 DE-GESLLSLACSAGYYELAQVL 426
D G + + A GY E++++L
Sbjct: 175 DNSGRTAMDYANQKGYTEISKIL 197
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 126 SLVQACSDGDVKTVKKLLTEG-RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+L++A + D K VK++L + V E EG + L++A E+A+ L+ A++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 185 R-----------GIKGE----------CTP------------LMEAASSGFIEIVRLLIN 211
+ G +G TP L+ AA G I+ V+LL+
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 212 HG-ADVNGQSSSGNTPLMYACA---GG--HEAVVRVLLECGANVEDHNENGHTPLMEAAS 265
G D++ Q+ G T L+ A G ++ +V++L+E GA+ + +G T + A
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187
Query: 266 AGHVGVAKILLEY 278
G+ ++KIL +Y
Sbjct: 188 KGYTEISKILAQY 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 35/218 (16%)
Query: 377 SLVQACSDGDVKTVKKLLTEG-RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+L++A + D K VK++L + V E EG + L++A E+A+ L+ A++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHX 495
+ + +P + A + GR + AY P+ N + LIP A+
Sbjct: 68 QNSISD-SPYLYAGAQGRT-----EILAYMLKHATPDLNKHNRYGGNA-LIPAAE----- 115
Query: 496 XXXXXXXXXXXCCGGFLDVADFLLKNG-ANIELGAS---TPLMEAA--QEG---HLELVR 546
G +D LL++G +I+ T L+EA +EG + ++V+
Sbjct: 116 -------------KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162
Query: 547 YLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
L+++GA K +G TA+ YA + G+T+++ +L Y
Sbjct: 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 36/219 (16%)
Query: 526 ELGASTPLMEAAQEGHLELVRYLL-DSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
E+GA L+EAA + + V+ +L D+ QV G+T L A N ++A L+
Sbjct: 5 EVGA---LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 585 GANLD------NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDV 638
GA+++ +S L A+G + +L ++ + G AL A E GH D
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 639 ADLLLSYG---ANLDNS---TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXX 692
LLL G + N T LIEA N QL D + ++
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGN--QLYQDIVKLLM-------------- 165
Query: 693 XXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSY 731
G + K +G TA+ YA + G+T+++ +L Y
Sbjct: 166 --ENGADQSI--KDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EA +G + VR+L+ +GADVN +G TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA+ GH+ + ++LLEYGA +N ++F ++A ++ G+ D+ L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANV---EDRGIKGECTPLMEAASSGFIEIVRLL 209
+D G+ LL A AG + ++L+A A+V +D G+ TPL AA G +EIV +L
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGV----TPLHLAAKRGHLEIVEVL 66
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ HGADVN S G TPL A GH +V VLLE GA+V ++ G T + G+
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 270 GVAKIL 275
+A+IL
Sbjct: 127 DLAEIL 132
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EA + G + VR L+ +GA V+A G T L A + GH ++ ++LL +GA+++ S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L AA GH +V++LL++ V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
G TPL AA+ G +EIV +L+ +GADVN Q G T + G+E + +L
Sbjct: 76 SDSWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G TPL AA GH+ + ++LL++GA +N S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-S 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
+ + + L LA GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK+GA++ S TPL AA GHLE+V LL+ GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EA + G + V++L+ V+A G T L A + GH ++ ++LL +GA+++ S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL++ + V+A+ +
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYG-------------------------ADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + +NG+ D+A++L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EA AG +IL+ GA +N ++ + L LA +GHL++V LL GAD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
T L A+ GH+E+ ++LL+ GA
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 436 RGIKGECTPLMEAASSG 452
G TPL AA+ G
Sbjct: 76 SDSWGR-TPLHLAATVG 91
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 61 GIKGECTPLMEAASSG 76
G TPL AA+ G
Sbjct: 77 DSWGR-TPLHLAATVG 91
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN GNTPL A H +V VLL+ GA+V H+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+G TPL AA GH+ + ++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V KG TPL AA +EIV +L+ H
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKH 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G+TPL A GH +V VLL+ GA+V ++ G T + G+ +A
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 273 KIL 275
+IL
Sbjct: 130 EIL 132
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L+EAA+ G + VR L+ +GA V+A + G+T L A + H ++ ++LL +GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
D ST L AA GH +V++LL V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G+TPL AA H+ + ++LL++GA +N H
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
N+ + L LA GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 78 ND-GSTPLHLAALFGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 512 LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTY 568
L++ + LLK+GA++ + STPL AA GHLE+V LL GA V+A+ + G TA
Sbjct: 60 LEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Query: 569 ACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 120 SIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 34/142 (23%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 649
L+EAA+ G + V++L+ V+A + G+T L A + H ++ ++LL +GA++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 650 -DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
D ST L AA GH +V++LL K G V+A+
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLL---------------------------KHGADVNAQD 110
Query: 707 QTGDTALTYACENGHTDVADLL 728
+ G TA + +NG+ D+A++L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFK-ESALTLACYKGHLDMVRFLLSAGADQEH 318
L+EAA AG +IL+ GA +N +N+ K + L LA HL++V LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN--ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 319 KTDEMHTALMEASMDGHVEVAKLLLDSGA 347
++ T L A++ GH+E+ ++LL GA
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EA +G + VR+L+ +GADVN +G TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA+ GH+ + ++LLEYGA +N ++F ++A ++ G+ D+ L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANV---EDRGIKGECTPLMEAASSGFIEIVRLL 209
+D G+ LL A AG + ++L+A A+V +D G+ TPL AA G +EIV +L
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGV----TPLHLAAKRGHLEIVEVL 66
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ HGADVN + G TPL A GH +V VLLE GA+V ++ G T + G+
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 270 GVAKIL 275
+A+IL
Sbjct: 127 DLAEIL 132
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
R I G TPL AA+ G +EIV +L+ +GADVN Q G T + G+E + +L
Sbjct: 76 RDIWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EA + G + VR L+ +GA V+A G T L A + GH ++ ++LL +GA+++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L AA GH +V++LL++ V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G TPL AA GH+ + ++LL++GA +N
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR- 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
+ + + L LA GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK+GA++ ++ TPL AA GHLE+V LL+ GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EA + G + V++L+ V+A G T L A + GH ++ ++LL +GA+++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL++ + V+A+ +
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYG-------------------------ADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + +NG+ D+A++L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EA AG +IL+ GA +N ++ + L LA +GHL++V LL GAD +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
T L A+ GH+E+ ++LL+ GA
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 436 RGIKGECTPLMEAASSG 452
R I G TPL AA+ G
Sbjct: 76 RDIWGR-TPLHLAATVG 91
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V R
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 61 GIKGECTPLMEAASSG 76
I G TPL AA+ G
Sbjct: 77 DIWGR-TPLHLAATVG 91
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 161 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQS 220
+LA S EL + +LA ++ R + T L A S+G EIV L+ G VN +
Sbjct: 13 NLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 71
Query: 221 SSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
+G +PL A + G + +V+ LL GA V N+NG TPL AAS +A +LLE GA
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
+ + ++ +A+ A KG+L M+ LL A + E +T L A + VE AK
Sbjct: 132 NPDA-KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 190
Query: 341 LLLDSGA 347
LL+ GA
Sbjct: 191 LLVSQGA 197
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 507 CCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G ++ +FLL+ G + + +PL AA G E+V+ LL GAQV+A Q G
Sbjct: 49 CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 108
Query: 564 TALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
T L YA ++A +LL GAN D +T + AA G+ ++ +LL + S +
Sbjct: 109 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 168
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLD 672
+ G+T L AC+ + A LL+S GA++ ++ AKGG +++ +++
Sbjct: 169 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 226
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
Q+ R+ L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
V G CTPL AAS EI +L+ GA+ + + T + A A G+ ++
Sbjct: 99 QVNAVNQNG-CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
+LL A+ + G+TPL A V AK+L+ GA I E KE L K
Sbjct: 158 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI---ENKEEKTPLQVAK 214
Query: 301 GHLDMV 306
G L ++
Sbjct: 215 GGLGLI 220
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPR 614
Q TAL +AC GHT++ + LL G +++ + L AA G +V+ LL
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 615 SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQL 669
V+A Q G T L YA ++A +LL GAN D +T + AA G+ ++ +
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 158
Query: 670 LLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLL 729
LL + K+ + + G+T L AC+ + A LL+
Sbjct: 159 LLYY-------------------------KASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Query: 730 SYGANL 735
S GA++
Sbjct: 194 SQGASI 199
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 385 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 443
G ++ +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 76
Query: 444 PLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXX 503
PL AAS+GR +E V A N + NG L A N H
Sbjct: 77 PLHIAASAGR----DEIVKALLGKGAQVNAVNQNGCTP---LHYAASKNRH--------- 120
Query: 504 XXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
++A LL+ GAN + +T + AA +G+L+++ LL A + +
Sbjct: 121 ---------EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 171
Query: 561 TGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLD 611
G+T L AC+ + A LL+S GA++ ++ AKGG +++ +++
Sbjct: 172 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 226
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 284 THSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLL 343
T +++ +AL AC GH ++V FLL G K D + L A+ G E+ K LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 344 DSGAQSVSAYARHDFFP------NDKCE----------RPSSISYTYSRSLVQACSDGDV 387
GAQ V+A ++ P ++ E P + + + ++ +A + G++
Sbjct: 95 GKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 388 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 447
K + LL S + EG + L LAC E A++L++ A++ K E TPL
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN-KEEKTPLQV 212
Query: 448 A 448
A
Sbjct: 213 A 213
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 34/213 (15%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A V
Sbjct: 44 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G CTPL AAS ++A L E A NP
Sbjct: 104 NQNG-CTPLHYAASKNRHEIAV--------------------MLLEGGA--------NPD 134
Query: 121 PQNE---RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
++ ++ +A + G++K + LL S + EG + L LAC E A++L++
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 178 MHANVEDRGIKGECTPLMEAASSGFIEIVRLLI 210
A++ K E TPL + A G I++ ++
Sbjct: 195 QGASIYIEN-KEEKTPL-QVAKGGLGLILKRMV 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 105/238 (44%), Gaps = 31/238 (13%)
Query: 9 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 67
G ++ +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 76
Query: 68 PLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSL 127
PL AAS+G E+++ L L + N QN +
Sbjct: 77 PLHIAASAG------------RDEIVKAL--------------LGKGAQVNAVNQNGCTP 110
Query: 128 VQACSDGDVKTVKKLLTEGRSVHETTDEGE-SLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ + + + +L EG + + D E + + A + G ++ +LL A+ +
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+G TPL A +E +LL++ GA + ++ TPL A GG +++ ++E
Sbjct: 171 TEGN-TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 226
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANLRNR 738
Q TAL +AC GHT++ + LL G + ++
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 70
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 161 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQS 220
+LA S EL + +LA ++ R + T L A S+G EIV L+ G VN +
Sbjct: 12 NLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 221 SSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
+G +PL A + G + +V+ LL GA V N+NG TPL AAS +A +LLE GA
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
+ + ++ +A+ A KG+L M+ LL A + E +T L A + VE AK
Sbjct: 131 NPDA-KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 189
Query: 341 LLLDSGA 347
LL+ GA
Sbjct: 190 LLVSQGA 196
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 507 CCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G ++ +FLL+ G + + +PL AA G E+V+ LL GAQV+A Q G
Sbjct: 48 CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 107
Query: 564 TALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
T L YA ++A +LL GAN D +T + AA G+ ++ +LL + S +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 167
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLD 672
+ G+T L AC+ + A LL+S GA++ ++ AKGG +++ +++
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 225
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 90/186 (48%), Gaps = 5/186 (2%)
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
Q+ R+ L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
V G CTPL AAS EI +L+ GA+ + + T + A A G+ ++
Sbjct: 98 QVNAVNQNG-CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
+LL A+ + G+TPL A V AK+L+ GA I E KE L K
Sbjct: 157 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI---ENKEEKTPLQVAK 213
Query: 301 GHLDMV 306
G L ++
Sbjct: 214 GGLGLI 219
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPR 614
Q TAL +AC GHT++ + LL G +++ + L AA G +V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 615 SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQL 669
V+A Q G T L YA ++A +LL GAN D +T + AA G+ ++ +
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 157
Query: 670 LLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLL 729
LL + K+ + + G+T L AC+ + A LL+
Sbjct: 158 LLYY-------------------------KASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Query: 730 SYGANL 735
S GA++
Sbjct: 193 SQGASI 198
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 34/235 (14%)
Query: 385 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 443
G ++ +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 444 PLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXX 503
PL AAS+GR +E V A N + NG L A N H
Sbjct: 76 PLHIAASAGR----DEIVKALLGKGAQVNAVNQNGCTP---LHYAASKNRH--------- 119
Query: 504 XXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
++A LL+ GAN + +T + AA +G+L+++ LL A + +
Sbjct: 120 ---------EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 170
Query: 561 TGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLD 611
G+T L AC+ + A LL+S GA++ ++ AKGG +++ +++
Sbjct: 171 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE 225
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 284 THSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLL 343
T +++ +AL AC GH ++V FLL G K D + L A+ G E+ K LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 344 DSGAQSVSAYARHDFFP------NDKCE----------RPSSISYTYSRSLVQACSDGDV 387
GAQ V+A ++ P ++ E P + + + ++ +A + G++
Sbjct: 94 GKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 388 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 447
K + LL S + EG + L LAC E A++L++ A++ K E TPL
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN-KEEKTPLQV 211
Query: 448 A 448
A
Sbjct: 212 A 212
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 34/213 (15%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A V
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G CTPL AAS ++A L E A NP
Sbjct: 103 NQNG-CTPLHYAASKNRHEIAV--------------------MLLEGGA--------NPD 133
Query: 121 PQNE---RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
++ ++ +A + G++K + LL S + EG + L LAC E A++L++
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 178 MHANVEDRGIKGECTPLMEAASSGFIEIVRLLI 210
A++ K E TPL + A G I++ ++
Sbjct: 194 QGASIYIEN-KEEKTPL-QVAKGGLGLILKRMV 224
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 31/238 (13%)
Query: 9 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 67
G ++ +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 68 PLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSL 127
PL AAS+G ++ A L + N QN +
Sbjct: 76 PLHIAASAGRDEIVK--------------------------ALLGKGAQVNAVNQNGCTP 109
Query: 128 VQACSDGDVKTVKKLLTEGRSVHETTDEGESL-LSLACSAGYYELAQVLLAMHANVEDRG 186
+ + + + +L EG + + D E+ + A + G ++ +LL A+ +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+G TPL A +E +LL++ GA + ++ TPL A GG +++ ++E
Sbjct: 170 TEGN-TPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 225
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANLRNR 738
Q TAL +AC GHT++ + LL G + ++
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EA +G + VR+L+ +GADVN +G TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA+ GH+ + ++LLEYGA +N ++F ++A ++ G+ D+ L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANV---EDRGIKGECTPLMEAASSGFIEIVRLL 209
+D G+ LL A AG + ++L+A A+V +D G+ TPL AA G +EIV +L
Sbjct: 12 SDLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGV----TPLHLAAKRGHLEIVEVL 66
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ HGADVN G TPL A GH +V VLLE GA+V ++ G T + G+
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 270 GVAKIL 275
+A+IL
Sbjct: 127 DLAEIL 132
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EA + G + VR L+ +GA V+A G T L A + GH ++ ++LL +GA+++ S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L AA GH +V++LL++ V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
I G TPL AA+ G +EIV +L+ +GADVN Q G T + G+E + +L
Sbjct: 76 SDIWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G TPL AA GH+ + ++LL++GA +N S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-S 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
+ + + L LA GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK+GA++ ++ TPL AA GHLE+V LL+ GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EA + G + V++L+ V+A G T L A + GH ++ ++LL +GA+++ S
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH +V++LL++ + V+A+ +
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYG-------------------------ADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + +NG+ D+A++L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EA AG +IL+ GA +N ++ + L LA +GHL++V LL GAD
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
T L A+ GH+E+ ++LL+ GA
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 436 RGIKGECTPLMEAASSG 452
I G TPL AA+ G
Sbjct: 76 SDIWGR-TPLHLAATVG 91
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A G V+ L+ G V+ D G + L LA G+ E+ +VLL A+V
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 61 GIKGECTPLMEAASSG 76
I G TPL AA+ G
Sbjct: 77 DIWGR-TPLHLAATVG 91
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 2/189 (1%)
Query: 159 LLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNG 218
+ +LA S EL + +LA ++ R + T L A S+G EIV L+ G VN
Sbjct: 10 ICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
+ +G +PL A + G + +V+ LL GA+V N+NG TPL AAS +A +LLE
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEV 338
GA + + + +A+ A KG+L MV LL A + E +T L A + VE
Sbjct: 129 GANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 339 AKLLLDSGA 347
AK L+ GA
Sbjct: 188 AKFLVTQGA 196
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
Q+ R+ L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
+V G CTPL AAS EI +L+ GA+ + + T + A A G+ +V
Sbjct: 98 HVNAVNQNG-CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
+LL A+ + G+TPL A V AK L+ GA I E KE L K
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI---ENKEEKTPLQVAK 213
Query: 301 GHLDMVRFLLSAG 313
G L ++ L+ G
Sbjct: 214 GGLGLILKRLAEG 226
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 12/176 (6%)
Query: 507 CCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G ++ +FLL+ G + + +PL AA G E+V+ LL GA V+A Q G
Sbjct: 48 CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC 107
Query: 564 TALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
T L YA ++A +LL GAN D ++T + AA G+ +V +LL + S +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLL 670
+ G+T L AC+ + A L++ GA++ ++ AKGG +++ L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPR 614
Q TAL +AC GHT++ + LL G +++ + L AA G +V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 615 SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQL 669
V+A Q G T L YA ++A +LL GAN D ++T + AA G+ +V +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 670 LLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLL 729
LL + K+ + + G+T L AC+ + A L+
Sbjct: 158 LLFY-------------------------KASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 730 SYGANL 735
+ GA++
Sbjct: 193 TQGASI 198
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 34/233 (14%)
Query: 385 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 443
G + +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 444 PLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXX 503
PL AAS+GR +E V A +L+ GA +NA
Sbjct: 76 PLHIAASAGR----DEIVKA--------------------LLVKGAHVNA-VNQNGCTPL 110
Query: 504 XXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
++A LL+ GAN + +T + AA +G+L++V LL A + +
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 561 TGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLL 609
G+T L AC+ + A L++ GA++ ++ AKGG +++ L
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+++ T L A SAGH + + LL+ G +N ++ S L +A G ++V+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
GA T L A+ E+A +LL+ GA P + +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------PDAKDH 137
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
+ ++ +A + G++K V LL S + EG + L LAC E A+ L+ A+
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 433 VEDRGIKGECTPLMEA 448
+ K E TPL A
Sbjct: 198 IYIEN-KEEKTPLQVA 212
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A+V
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAV 102
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G CTPL AAS ++A L E A NP
Sbjct: 103 NQNG-CTPLHYAASKNRHEIAV--------------------MLLEGGA--------NPD 133
Query: 121 PQNE---RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
++ ++ +A + G++K V LL S + EG + L LAC E A+ L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 178 MHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
A++ K E TPL + A G I++ L
Sbjct: 194 QGASIYIEN-KEEKTPL-QVAKGGLGLILKRL 223
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 30/227 (13%)
Query: 9 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 67
G + +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 68 PLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSL 127
PL AAS+G ++ A L + + N QN +
Sbjct: 76 PLHIAASAGRDEIVK--------------------------ALLVKGAHVNAVNQNGCTP 109
Query: 128 VQACSDGDVKTVKKLLTEGRSVHETTDEGE-SLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ + + + +L EG + + D + + + A + G ++ +LL A+ +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAG 233
+G TPL A +E + L+ GA + ++ TPL A G
Sbjct: 170 TEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANLRNR 738
Q TAL +AC GHT++ + LL G + ++
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 4 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
+A + G++K V LL S + EG + L LAC E A+ L+ A++ K
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-K 203
Query: 64 GECTPLMEAASSGFG----KLATGD 84
E TPL + A G G +LA G+
Sbjct: 204 EEKTPL-QVAKGGLGLILKRLAEGE 227
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 2/189 (1%)
Query: 159 LLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNG 218
+ +LA S EL + +LA ++ R + T L A S+G EIV L+ G VN
Sbjct: 10 ICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
+ +G +PL A + G + +V+ LL GA+V N+NG TPL AAS +A +LLE
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEV 338
GA + + + +A+ A KG+L MV LL A + E +T L A + VE
Sbjct: 129 GANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187
Query: 339 AKLLLDSGA 347
AK L+ GA
Sbjct: 188 AKFLVTQGA 196
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
Q+ R+ L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
+V G CTPL AAS EI +L+ GA+ + + T + A A G+ +V
Sbjct: 98 HVNAVNQNG-CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
+LL A+ + G+TPL A V AK L+ GA I E KE L K
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI---ENKEEKTPLQVAK 213
Query: 301 GHLDMVRFLLSAG 313
G L ++ L+ G
Sbjct: 214 GGLGLILKRLAEG 226
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 12/176 (6%)
Query: 507 CCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G ++ +FLL+ G + + +PL AA G E+V+ LL GA V+A Q G
Sbjct: 48 CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107
Query: 564 TALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
T L YA ++A +LL GAN D ++T + AA G+ +V +LL + S +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLL 670
+ G+T L AC+ + A L++ GA++ ++ AKGG +++ L
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 35/186 (18%)
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANLDNS-----TMLIEAAKGGHANVVQLLLDFPR 614
Q TAL +AC GHT++ + LL G +++ + L AA G +V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 615 SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQL 669
V+A Q G T L YA ++A +LL GAN D ++T + AA G+ +V +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 670 LLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLL 729
LL + K+ + + G+T L AC+ + A L+
Sbjct: 158 LLFY-------------------------KASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Query: 730 SYGANL 735
+ GA++
Sbjct: 193 TQGASI 198
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 34/233 (14%)
Query: 385 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 443
G + +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 444 PLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXX 503
PL AAS+G +E V A +L+ GA +NA
Sbjct: 76 PLHIAASAGX----DEIVKA--------------------LLVKGAHVNA-VNQNGCTPL 110
Query: 504 XXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
++A LL+ GAN + +T + AA +G+L++V LL A + +
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 561 TGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLL 609
G+T L AC+ + A L++ GA++ ++ AKGG +++ L
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A+V
Sbjct: 43 ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G CTPL AAS ++A L E A NP
Sbjct: 103 NQNG-CTPLHYAASKNRHEIAV--------------------MLLEGGA--------NPD 133
Query: 121 PQNE---RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
++ ++ +A + G++K V LL S + EG + L LAC E A+ L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 178 MHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
A++ K E TPL + A G I++ L
Sbjct: 194 QGASIYIEN-KEEKTPL-QVAKGGLGLILKRL 223
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 20/196 (10%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+++ T L A SAGH + + LL+ G +N ++ S L +A G ++V+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
GA T L A+ E+A +LL+ GA P + +
Sbjct: 96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------PDAKDH 137
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
+ ++ +A + G++K V LL S + EG + L LAC E A+ L+ A+
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
Query: 433 VEDRGIKGECTPLMEA 448
+ K E TPL A
Sbjct: 198 IYIEN-KEEKTPLQVA 212
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 30/227 (13%)
Query: 9 GDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECT 67
G + +K+ + +S+ TD+ + L ACSAG+ E+ + LL + V D+ G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG-WS 75
Query: 68 PLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSL 127
PL AAS+G ++ A L + + N QN +
Sbjct: 76 PLHIAASAGXDEIVK--------------------------ALLVKGAHVNAVNQNGCTP 109
Query: 128 VQACSDGDVKTVKKLLTEGRSVHETTDEGESL-LSLACSAGYYELAQVLLAMHANVEDRG 186
+ + + + +L EG + + D ++ + A + G ++ +LL A+ +
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAG 233
+G TPL A +E + L+ GA + ++ TPL A G
Sbjct: 170 TEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANLRNR 738
Q TAL +AC GHT++ + LL G + ++
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 4 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
+A + G++K V LL S + EG + L LAC E A+ L+ A++ K
Sbjct: 145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-K 203
Query: 64 GECTPLMEAASSGFG----KLATGD 84
E TPL + A G G +LA G+
Sbjct: 204 EEKTPL-QVAKGGLGLILKRLAEGE 227
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + G TPL A A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA GH+ +A++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+AK + G T L A +GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L AA GH + ++LL V+A+ + G TA + NG+ D+A++L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V + G TPL A + G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G TPL A GH + VLL+ GA+V ++ G T + G+ +A
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 273 KIL 275
+IL
Sbjct: 130 EIL 132
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V +E G TPL A + GH+ + ++LL+ GA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-V 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
+ + L LA + GHL++ LL GAD + TA + +G+ ++A++L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLKNGA++ + TPL AA GHLE+ LL GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ NG+ D+A++L
Sbjct: 118 DISIGNGNEDLAEIL 132
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+AK + G T L A +GH ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA GH + ++LL + V+A+ +
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLK-------------------------HGADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + NG+ D+A++L
Sbjct: 113 GKTAFDISIGNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
A G D VR L++ GAD K + T L A+ GH+E+ ++LL +GA V+A
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVNAVDAI 79
Query: 357 DFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS 416
F P L A G ++ + LL G V+ G++ ++
Sbjct: 80 GFTP-----------------LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122
Query: 417 AGYYELAQVL 426
G +LA++L
Sbjct: 123 NGNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 34/116 (29%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G ++ V+ LL G V+ G + L LA G+ E+A+VLL
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL---------- 100
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
HGADVN Q G T + G+E + +L
Sbjct: 101 ------------------------KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A + G ++ V+ LL G V+ G + L LA G+ E+A+VLL A+V
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--- 107
Query: 62 IKGECTPLMEAASSGFGK----LATGDGKLADPEVLRRLT 97
A FGK ++ G+G E+L++L
Sbjct: 108 -----------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 327 LMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGD 386
L+EA+ G + ++L+ +GA V+A + P L A + G
Sbjct: 18 LLEAARAGQDDEVRILMANGA-DVNAKDEYGLTP-----------------LYLATAHGH 59
Query: 387 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 433
++ V+ LL G V+ G + L LA G+ E+A+VLL A+V
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 509 GGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTA 565
G +D+ L++ GANI+ + TPLMEAA+ HLE V+YL+ +GA V K G T
Sbjct: 21 AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80
Query: 566 LTYACENGHTDVADLLLSYGANLDN------STMLIEAAKGGHANVVQLLLDFPRSVHAK 619
L A + GH +V LLS G N T +I A + H ++V+LLL ++ +
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 620 TQTGDTALTYACENGHTDVADLLLS-----YGANLDNSTMLIEAAKGGHANVVQLLL 671
+ L +A +G D+A++LL+ + N+ + L AA+ + V L L
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL 197
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+PL AA +G ++I +L+ GA+++ S TPLM A H V+ L++ GA V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ G T L AA GH V + LL G ++ + + A H+D+V+ LLS
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLL 343
G+D + +E + L A+ G V++A++LL
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 19/206 (9%)
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
N + ++N +PL AA AGHV + +L++ GA I+T S E + + L A HL+ V+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVK 61
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERP 367
+L+ AGA + K E T L A+ GH EV + LL +G V+ + P
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP------- 114
Query: 368 SSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 427
++ A V VK LL++G ++ +E L A +G ++A++LL
Sbjct: 115 ----------MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 428 AMHANVEDRGIKGECTPLMEAASSGR 453
A ++ I G+ +PL AA R
Sbjct: 165 AAKCDLHAVNIHGD-SPLHIAARENR 189
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 21/222 (9%)
Query: 225 TPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINT 284
+PL A GH + +L++ GAN++ +E+ TPLMEAA H+ K L++ GA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGA-DQEHKTDEMHTALMEASMDGHVEVAKLLL 343
E + L LA KGH ++V++LLS G D + D T ++ A+ HV++ KLLL
Sbjct: 73 KDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 344 DSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHET 403
G+ D D E + L A G V + LL +H
Sbjct: 132 SKGS---------DINIRDNEE---------NICLHWAAFSGCVDIAEILLAAKCDLHAV 173
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 445
G+S L +A Y+ + L+ ++V + +GE TPL
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE-TPL 214
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)
Query: 122 QNERSLVQACSD-GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
QN+RS + A ++ G V L+ G ++ +++ + L A + E + L+ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVV 239
V+ + +G T L AA G E+V+ L+++G DVN Q G TP+++A H +V
Sbjct: 69 LVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 240 RVLLECGA--NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS-NEFKESALTL 296
++LL G+ N+ D+ EN L AA +G V +A+ILL A + H+ N +S L +
Sbjct: 128 KLLLSKGSDINIRDNEEN--ICLHWAAFSGCVDIAEILL--AAKCDLHAVNIHGDSPLHI 183
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHV----EVAKLLLDSG 346
A + D V LS +D K E T L AS++ V +++K L DS
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD- 589
+PL AA+ GH+++ L+ +GA + ++ T L A EN H + L+ GA +D
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 590 ----NSTMLIEAAKGGHANVVQLLL-DFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
ST L AAK GH VVQ LL + V+ + G T + +A E H D+ LLLS
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 645 YGANL---DN--STMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKK 699
G+++ DN + L AA G ++ ++LL K
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILL-------------------------AAK 167
Query: 700 SGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN--LRNR 738
+HA GD+ L A D L LS ++ L+N+
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPR 614
Q + L A E GH D+ +L+ GAN+ D T L+EAA+ H V+ L+
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 615 SVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN------STMLIEAAKGGHANVVQ 668
V K G T L A + GH +V LLS G N T +I A + H ++V+
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 669 LLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLL 728
LLL K S ++ + + L +A +G D+A++L
Sbjct: 129 LLL-------------------------SKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 729 LSYGANL 735
L+ +L
Sbjct: 164 LAAKCDL 170
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 34/197 (17%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA---MHANVE 58
L++A + ++ VK L+ G V EG + L LA G+YE+ Q LL+ M N +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 59 DRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNEN 118
D G TP++ A +D L++ + N
Sbjct: 108 D---DGGWTPMIWATEYKH--------------------------VDLVKLLLSKGSDIN 138
Query: 119 PRPQNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
R E L A G V + LL +H G+S L +A Y+ + L+
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198
Query: 178 MHANVEDRGIKGECTPL 194
++V + +GE TPL
Sbjct: 199 RDSDVTLKNKEGE-TPL 214
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ +P+ EAA G +R LI+ G VN ++ +PL AC GGH + V++LL+ GA V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ HTPL A +G +LL++GA + S+ S + A +GH++ V L
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSL 120
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
++ G + +HK + T L A + K LL+SGA
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
L +AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
+P+ EAA G +E V LI +G +++ + S TPL AC A V+ LLE
Sbjct: 99 SDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKES 292
GA+V + + +PL A +A +L+++GA + E K
Sbjct: 157 GADV-NQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 8/151 (5%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
+PL EA GHL V+ LL GAQV+ T T L AC +G D +LLL +GA++
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 589 --DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
D ++ + EAA+ GH V L+ + ++ K T L ACEN LL G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 647 ANLD----NSTMLIEAAKGGHANVVQLLLDF 673
A+++ + L A+ + LL+DF
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDF 188
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 27/223 (12%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
S +P+ A GH+ +R L+ G V + +PL EA GH+ KILL++GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+N + ++ + L AC G D V LL GA + ++D + + + EA+ GHVE
Sbjct: 62 VNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNS 119
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSR---SLVQACSDGDVKTVKKLLTEGR 398
L+ G +I + S L AC + VKKLL G
Sbjct: 120 LIAYGG---------------------NIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Query: 399 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE 441
V++ + L ++A +A ELA +L+ A+ + + +G+
Sbjct: 159 DVNQGKGQDSPLHAVARTAS-EELACLLMDFGADTQAKNAEGK 200
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 18/199 (9%)
Query: 441 ECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQ----------ASVILIPGAK 490
+ +P+ EAA G Q +L +S + D V+ L ++L GA+
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 491 INAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--ELGASTPLMEAAQEGHLELVRYL 548
+N C G D + LL++GA++ E ++P+ EAA+ GH+E V L
Sbjct: 62 VNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 120
Query: 549 LDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD----NSTMLIEAAKGGHAN 604
+ G + K T L ACEN LL GA+++ + L A+
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEE 180
Query: 605 VVQLLLDFPRSVHAKTQTG 623
+ LL+DF AK G
Sbjct: 181 LACLLMDFGADTQAKNAEG 199
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 80/209 (38%), Gaps = 57/209 (27%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
+P+ EAA GH +R L+ G V+ T D+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITA----------------------------DH 36
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 649
+ L EA GGH + V++LL V+ T T L AC +G D +LLL +GA++
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 650 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKT 706
D ++ + EAA+ GH V L+ + GG + K
Sbjct: 97 PESDLASPIHEAARRGHVECVNSLIAY-----GG--------------------NIDHKI 131
Query: 707 QTGDTALTYACENGHTDVADLLLSYGANL 735
T L ACEN LL GA++
Sbjct: 132 SHLGTPLYLACENQQRACVKKLLESGADV 160
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 37/228 (16%)
Query: 4 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
+A G +++ L+++G +V+ T + S L AC G+ ++LL A V G+
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN--GVT 66
Query: 64 GEC-TPLMEAASSGFG---KLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
+ TPL A SG L G PE S ++ + EAA
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPE------SDLASPIHEAA----------- 109
Query: 120 RPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
G V+ V L+ G ++ + L LAC + LL
Sbjct: 110 ------------RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
A+V ++G KG+ +PL A + E+ LL++ GAD +++ G P+
Sbjct: 158 ADV-NQG-KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 292 SALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVS 351
S + A GH +R L+S G T + + L EA + GH+ K+LL GAQ
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-- 62
Query: 352 AYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLL 411
+ ++ + L AC G V LL G SV +D S +
Sbjct: 63 ----------------NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPI 105
Query: 412 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQ 454
A G+ E L+A N+ D I TPL A + ++
Sbjct: 106 HEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQR 147
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L +AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Query: 61 GIKGECTPLMEAASSG 76
+P+ EAA G
Sbjct: 99 SDLA--SPIHEAARRG 112
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ +P+ EAA G +R LI+ G VN ++ +PL AC GGH + V++LL+ GA V
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ HTPL A +G +LL++GA + S+ S + A +GH++ V L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSL 176
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
++ G + +HK + T L A + K LL+SGA
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
L +AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
+P+ EAA G +E V LI +G +++ + S TPL AC A V+ LLE
Sbjct: 155 --SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKES 292
GA+V + + +PL +A +L+++GA + E K
Sbjct: 213 GADV-NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
+PL EA GHL V+ LL GAQV+ T T L AC +G D +LLL +GA++
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 589 --DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
D ++ + EAA+ GH V L+ + ++ K T L ACEN LL G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 647 ANLDNS----TMLIEAAKGGHANVVQLLLDF 673
A+++ + L + + LL+DF
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDF 244
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 30/239 (12%)
Query: 206 VRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAAS 265
+RLL N + G + S +P+ A GH+ +R L+ G V + +PL EA
Sbjct: 45 IRLLSN---PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101
Query: 266 AGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHT 325
GH+ KILL++GA +N + ++ + L AC G D V LL GA + ++D + +
Sbjct: 102 GGHLSCVKILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LAS 159
Query: 326 ALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSR---SLVQAC 382
+ EA+ GHVE L+ G +I + S L AC
Sbjct: 160 PIHEAARRGHVECVNSLIAYGG---------------------NIDHKISHLGTPLYLAC 198
Query: 383 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE 441
+ VKKLL G V++ + L ++ +A ELA +L+ A+ + + +G+
Sbjct: 199 ENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTAS-EELACLLMDFGADTQAKNAEGK 256
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 18/199 (9%)
Query: 441 ECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQ----------ASVILIPGAK 490
+ +P+ EAA G Q +L +S + D V+ L ++L GA+
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 491 INAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANI--ELGASTPLMEAAQEGHLELVRYL 548
+N C G D + LL++GA++ E ++P+ EAA+ GH+E V L
Sbjct: 118 VNG-VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176
Query: 549 LDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS----TMLIEAAKGGHAN 604
+ G + K T L ACEN LL GA+++ + L +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEE 236
Query: 605 VVQLLLDFPRSVHAKTQTG 623
+ LL+DF AK G
Sbjct: 237 LACLLMDFGADTQAKNAEG 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 32/147 (21%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
+P+ EAA GH +R L+ G V+ T D+
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITA----------------------------DH 92
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 649
+ L EA GGH + V++LL V+ T T L AC +G D +LLL +GA++
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 650 ---DNSTMLIEAAKGGHANVVQLLLDF 673
D ++ + EAA+ GH V L+ +
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAY 179
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 93/228 (40%), Gaps = 37/228 (16%)
Query: 4 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
+A G +++ L+++G +V+ T + S L AC G+ ++LL A V G+
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN--GVT 122
Query: 64 GEC-TPLMEAASSGFG---KLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
+ TPL A SG L G PE S ++ + EAA
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPE------SDLASPIHEAA----------- 165
Query: 120 RPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
G V+ V L+ G ++ + L LAC + LL
Sbjct: 166 ------------RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
A+V ++G KG+ +PL + E+ LL++ GAD +++ G P+
Sbjct: 214 ADV-NQG-KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L +AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 61 GIKGECTPLMEAASSG 76
+P+ EAA G
Sbjct: 155 --SDLASPIHEAARRG 168
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 585 GANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
G + + + + EAA GH ++ L+ +V+ T + L AC GH +LL
Sbjct: 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113
Query: 645 YGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 677
+GA + D T L A G + V LLL SV
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L +GADVN G+TPL A GH +V VLL+ GA+V
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA A H+ + ++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L A A+V G TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILTANGADVNANDYWGH-TPLHLAAMLGHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN ++G TPL A H +V VLL+ GA+V ++ G T + G+ +A
Sbjct: 70 GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 273 KIL 275
+IL
Sbjct: 130 EIL 132
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L GA+V ++ GHTPL AA GH+ + ++LL+ GA +N
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
N + + L LA + HL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 78 NTGR-TPLHLAAWADHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 591
L+EAA+ G + VR L +GA V+A G T L A GH ++ ++LL GA+++ +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 592 ----TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L AA H +V++LL V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLKNGA++ +T PL AA HLE+V LL GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL GA +N ++ + + L LA GHL++V LL GAD
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ T L A+ H+E+ ++LL GA
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS- 652
L+EAA+ G + V++L V+A G T L A GH ++ ++LL GA+++ +
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 653 ----TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L AA H +V++LL + V+A+ +
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHG-------------------------ADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + +NG+ D+A++L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN G TPL A GH +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL AA GH+ + ++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V +E+G TPL AA GH+ + ++LL+YGA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
N F + L LA +GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 78 N-FGITPLHLAAIRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---D 589
L+EAA+ G + VR L+ +GA V+A + G T L A + GH ++ ++LL YGA++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 590 NS--TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
N T L AA GH +V++LL V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA G +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNALDEDG-LTPLHLAAQLGHLEIVEVLLKY 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + + G TPL A GH +V VLL+ GA+V ++ G T + G+ +A
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 273 KIL 275
+IL
Sbjct: 130 EIL 132
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ + LLK GA++ + TPL AA GHLE+V LL GA V+A+ + G TA
Sbjct: 58 GHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Query: 567 TYACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 118 DISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N +E + L LA GHL++V LL GAD +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ T L A++ GH+E+ ++LL GA
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 34/142 (23%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---D 650
L+EAA+ G + V++L+ V+A + G T L A + GH ++ ++LL YGA++ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 651 NS--TMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSG--VHAKT 706
N T L AA GH +V++LL K G V+A+
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLL---------------------------KHGADVNAQD 110
Query: 707 QTGDTALTYACENGHTDVADLL 728
+ G TA + +NG+ D+A++L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 1/190 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+V+A G + ++L+ G V + E +LL A +L + ++ A V+ G
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
TPL A G + +V L+ +GAD + G + + A GH ++V L+ G
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 247 ANVEDHNENGHTPLMEAASAGH-VGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
+V+ ++NG TPLM AA H V ++LL + +N K +AL A G+ +
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192
Query: 306 VRFLLSAGAD 315
+ LL AGA+
Sbjct: 193 ISLLLEAGAN 202
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
Query: 512 LDVADFLLKNGANI-ELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALT 567
+D+ + + GA + +LG STPL A ++GHL +V L+ GA G + +
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH 114
Query: 568 YACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHA-NVVQLLLDFPRSVHAKTQ 621
A + GHT + L++ G ++D T L+ AA H+ + +LLL F SV+ +
Sbjct: 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Query: 622 T-GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAA 659
+TAL +A G+T V LLL GAN+D + E+A
Sbjct: 175 YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA 213
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
N L A G + V +L+ G EG S + LA G+ + L+A +V
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 183 EDRGIKGECTPLMEAA-SSGFIEIVRLLINHGADVN-GQSSSGNTPLMYACAGGHEAVVR 240
+ G TPLM AA + ++ RLL+ VN G NT L +A G+ V+
Sbjct: 136 DMMDQNG-MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
+LLE GANV+ N G + L A +V + L E
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 28/208 (13%)
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACY 299
R L+E G +V ++ T L AA + + K + GA ++ + + L A
Sbjct: 26 RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATR 85
Query: 300 KGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFF 359
+GHL MV L+ GAD E + + A+ GH + L+ G Q V ++
Sbjct: 86 QGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMT 144
Query: 360 PNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSV------HETTDEGESLLSL 413
P + A V + LLT SV H+ T L
Sbjct: 145 P----------------LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT-----ALHW 183
Query: 414 ACSAGYYELAQVLLAMHANVEDRGIKGE 441
A AG + +LL ANV+ + IKGE
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGE 211
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%)
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
G K TPL AA +G E V+ L++ GADVN +S GNTPL A GH +V++LL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
GA+V +++G+TP A GH + K+L GA +N S
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 28/121 (23%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
+TPL AA+ GH E V+ LL GA V+A+++ G+T L A +NGH ++ LLL+ GA+
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-- 67
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 649
V+A+++ G+T A +NGH ++ LL + GA++
Sbjct: 68 --------------------------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 650 D 650
+
Sbjct: 102 N 102
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
S GNTPL A GH V+ LL GA+V +++G+TPL AA GH + K+LL G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 280 AGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
A +N S + + LA GH ++V+ L + GAD
Sbjct: 66 ADVNARSKDG-NTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A +G + VKKLL++G V+ + +G + L LA G+ E+ ++LLA A+V R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQS 220
G TP A +G EIV+LL GADVN +S
Sbjct: 73 KDGN-TPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
++G+TPL AA GH K LL GA +N S + + L LA GH ++V+ LL+ G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG-NTPLHLAAKNGHAEIVKLLLAKG 65
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
AD ++ + +T A +GH E+ KLL GA
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
D +T L AAK GHA V+ LL V+A+++ G+T L A +NGH ++ LLL+ GA+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 649 L-----DNSTMLIEAAKGGHANVVQLL 670
+ D +T A K GH +V+LL
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 518 LLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
LL GA++ + +TPL AA+ GH E+V+ LL GA V+A+++ G+T A +NGH
Sbjct: 28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87
Query: 575 TDVADLLLSYGANLD 589
++ LL + GA+++
Sbjct: 88 HEIVKLLDAKGADVN 102
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 30/125 (24%)
Query: 620 TQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFP 674
++ G+T L A +NGH + LLS GA++ D +T L AAK GHA +V+LLL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--- 62
Query: 675 RSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
K + V+A+++ G+T A +NGH ++ LL + GA+
Sbjct: 63 ----------------------AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Query: 735 LRNRT 739
+ R+
Sbjct: 101 VNARS 105
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L A +G + VKKLL++G V+ + +G + L LA G+ E+ ++LLA A+V R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 438 IKGECTPLMEAASSGRQ 454
G TP A +G
Sbjct: 73 KDGN-TPEHLAKKNGHH 88
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A +G + VKKLL++G V+ + +G + L LA G+ E+ ++LLA A+V R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 62 IKGECTPLMEAASSGF 77
G TP A +G
Sbjct: 73 KDGN-TPEHLAKKNGH 87
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + G TPL A H +V VLL+ GA+V +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
G TPL A GH+ + ++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA V+A+ + G T L A N H ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
T L A GH +V++LL V+A+ + G TA + +NG+ D+A++L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+D G+ LL A AG + ++L+A A+V G TPL AA + +EIV +L+ +
Sbjct: 12 SDLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLKN 69
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADVN + G TPL GH +V VLL+ GA+V ++ G T + G+ +A
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 273 KIL 275
+IL
Sbjct: 130 EIL 132
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 512 LDVADFLLKNGAN---IELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTY 568
L++ + LLKNGA+ I+ TPL A GHLE+V LL GA V+A+ + G TA
Sbjct: 60 LEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Query: 569 ACENGHTDVADLL 581
+ +NG+ D+A++L
Sbjct: 120 SIDNGNEDLAEIL 132
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++ G TPL AA H+ + ++LL+ GA +N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA-I 76
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLL 342
+ E+ L L GHL++V LL GAD + D+ + S+D G+ ++A++L
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 30/140 (21%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ V+A+ + G T L A N H ++ ++LL GA+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
T L A GH +V++LL + V+A+ +
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHG-------------------------ADVNAQDKF 112
Query: 709 GDTALTYACENGHTDVADLL 728
G TA + +NG+ D+A++L
Sbjct: 113 GKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 22/132 (16%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA--QSVSAYA 354
A G D VR L++ GAD + T L A+M+ H+E+ ++LL +GA ++ A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 355 RHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLA 414
E P + Y G ++ V+ LL G V+ G++ ++
Sbjct: 81 ----------ETPLHLVAMY----------GHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 415 CSAGYYELAQVL 426
G +LA++L
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 124 ERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV--LLAMHAN 181
+R L++A GDV+TVKKL T +SV+ EG L +AGY ++ V LL A+
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V + KG PL A S G E+ LL+ HGA VN TPL A A G + ++
Sbjct: 72 VHAKD-KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 130
Query: 242 LLECGANVEDHNENGHTPL 260
LL+ GA+ N +G+TPL
Sbjct: 131 LLQHGADPTKKNRDGNTPL 149
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 521 NGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
N +IE STPL AA + +V YLL GA VHAK + G L AC GH +VA+L
Sbjct: 38 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 97
Query: 581 LLSYG-----ANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGH 635
L+ +G A+L T L EAA G + +LLL K + G+T L ++G
Sbjct: 98 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGD 156
Query: 636 TDVADLLLSYGANLD 650
TD+ DLL A LD
Sbjct: 157 TDIQDLLRGDAALLD 171
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 194 LMEAASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
L+EAA +G +E V+ L + D+ G+ S TPL +A +VV LL+ GA+V
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 72
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++ G PL A S GH VA++L+++GA +N ++ +K + L A KG ++ + L
Sbjct: 73 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLL 131
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
L GAD K + +T L + DG ++ LL
Sbjct: 132 LQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLL 163
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 218 GQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
G S + L A AG E V ++ N D TPL AA V V + LL+
Sbjct: 8 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 278 YGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVE 337
+GA ++ ++ L AC GH ++ L+ GA T L EA+ G E
Sbjct: 68 HGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 338 VAKLLLDSGA 347
+ KLLL GA
Sbjct: 127 ICKLLLQHGA 136
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 322 EMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA 381
E L+EA+ G VE K L QSV+ D + P + Y+R
Sbjct: 11 EADRQLLEAAKAGDVETVKKL--CTVQSVNC---RDI--EGRQSTPLHFAAGYNR----- 58
Query: 382 CSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE 441
V V+ LL G VH G L ACS G+YE+A+ LL H V + +
Sbjct: 59 -----VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWK 112
Query: 442 CTPLMEAASSGR 453
TPL EAA+ G+
Sbjct: 113 FTPLHEAAAKGK 124
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 11 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 70
V V+ LL G VH G L ACS G+YE+A+ LL H V + + TPL
Sbjct: 59 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLH 117
Query: 71 EAASSG 76
EAA+ G
Sbjct: 118 EAAAKG 123
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
VHAK + G L AC GH +VA+LL+ +GA
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 124 ERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV--LLAMHAN 181
+R L++A GDV+TVKKL T +SV+ EG L +AGY ++ V LL A+
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V + KG PL A S G E+ LL+ HGA VN TPL A A G + ++
Sbjct: 70 VHAKD-KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 128
Query: 242 LLECGANVEDHNENGHTPL 260
LL+ GA+ N +G+TPL
Sbjct: 129 LLQHGADPTKKNRDGNTPL 147
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 521 NGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
N +IE STPL AA + +V YLL GA VHAK + G L AC GH +VA+L
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 95
Query: 581 LLSYG-----ANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGH 635
L+ +G A+L T L EAA G + +LLL K + G+T L ++G
Sbjct: 96 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGD 154
Query: 636 TDVADLL 642
TD+ DLL
Sbjct: 155 TDIQDLL 161
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 194 LMEAASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
L+EAA +G +E V+ L + D+ G+ S TPL +A +VV LL+ GA+V
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++ G PL A S GH VA++L+++GA +N ++ +K + L A KG ++ + L
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLL 129
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
L GAD K + +T L + DG ++ LL
Sbjct: 130 LQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLL 161
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG--- 646
ST L AA +VV+ LL VHAK + G L AC GH +VA+LL+ +G
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103
Query: 647 --ANLDNSTMLIEAAKGGHANVVQLLL 671
A+L T L EAA G + +LLL
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GA +G S + L A AG E V ++ N D TPL AA V V
Sbjct: 1 GAMGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 60
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
+ LL++GA ++ ++ L AC GH ++ L+ GA T L EA+
Sbjct: 61 EYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 119
Query: 333 DGHVEVAKLLLDSGA 347
G E+ KLLL GA
Sbjct: 120 KGKYEICKLLLQHGA 134
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 322 EMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA 381
E L+EA+ G VE K L QSV+ D + P + Y+R
Sbjct: 9 EADRQLLEAAKAGDVETVKKL--CTVQSVNC---RDI--EGRQSTPLHFAAGYNR----- 56
Query: 382 CSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE 441
V V+ LL G VH G L ACS G+YE+A+ LL H V + +
Sbjct: 57 -----VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWK 110
Query: 442 CTPLMEAASSGR 453
TPL EAA+ G+
Sbjct: 111 FTPLHEAAAKGK 122
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 11 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 70
V V+ LL G VH G L ACS G+YE+A+ LL H V + + TPL
Sbjct: 57 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLH 115
Query: 71 EAASSG 76
EAA+ G
Sbjct: 116 EAAAKG 121
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
VHAK + G L AC GH +VA+LL+ +GA
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 124 ERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV--LLAMHAN 181
+R L++A GDV+TVKKL T +SV+ EG L +AGY ++ V LL A+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V + KG PL A S G E+ LL+ HGA VN TPL A A G + ++
Sbjct: 68 VHAKD-KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 242 LLECGANVEDHNENGHTPL 260
LL+ GA+ N +G+TPL
Sbjct: 127 LLQHGADPTKKNRDGNTPL 145
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 194 LMEAASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
L+EAA +G +E V+ L + D+ G+ S TPL +A +VV LL+ GA+V
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++ G PL A S GH VA++L+++GA +N ++ +K + L A KG ++ + L
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLL 127
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
L GAD K + +T L + DG ++ LL
Sbjct: 128 LQHGADPTKKNRDGNTPL-DLVKDGDTDIQDLL 159
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 521 NGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
N +IE STPL AA + +V YLL GA VHAK + G L AC GH +VA+L
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 581 LLSYG-----ANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGH 635
L+ +G A+L T L EAA G + +LLL K + G+T L ++G
Sbjct: 94 LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGD 152
Query: 636 TDVADLL 642
TD+ DLL
Sbjct: 153 TDIQDLL 159
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG--- 646
ST L AA +VV+ LL VHAK + G L AC GH +VA+LL+ +G
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 647 --ANLDNSTMLIEAAKGGHANVVQLLL 671
A+L T L EAA G + +LLL
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 218 GQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
G S + L A AG E V ++ N D TPL AA V V + LL+
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 278 YGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVE 337
+GA ++ ++ L AC GH ++ L+ GA T L EA+ G E
Sbjct: 64 HGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 338 VAKLLLDSGA 347
+ KLLL GA
Sbjct: 123 ICKLLLQHGA 132
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 322 EMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA 381
E L+EA+ G VE K L QSV+ D + P + Y+R
Sbjct: 7 EADRQLLEAAKAGDVETVKKL--CTVQSVNC---RDI--EGRQSTPLHFAAGYNR----- 54
Query: 382 CSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE 441
V V+ LL G VH G L ACS G+YE+A+ LL H V + +
Sbjct: 55 -----VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWK 108
Query: 442 CTPLMEAASSGR 453
TPL EAA+ G+
Sbjct: 109 FTPLHEAAAKGK 120
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 11 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 70
V V+ LL G VH G L ACS G+YE+A+ LL H V + + TPL
Sbjct: 55 VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLH 113
Query: 71 EAASSG 76
EAA+ G
Sbjct: 114 EAAAKG 119
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
VHAK + G L AC GH +VA+LL+ +GA
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPLM AA+ G I +V L+ +GAD + L AC+ G+ +V++LL+CG +V +
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
++ NG TPL+ A HV K+LLE GA
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
N S+ Q + G++ + + + ++ T +EG + L A + G + + LL A+
Sbjct: 19 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ G KG + L A S G+ +IV++L++ G DVN +G TPL+YA G H V++L
Sbjct: 79 QLLG-KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
LE GA+ ++G+ + A + G+ V +++
Sbjct: 138 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 248 NVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
NV +H +E G TPLM AA+ G + V + LL+ GA + +ESAL+LAC KG+ D+V
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIV 101
Query: 307 RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ LL G D T L+ A HV+ K+LL+SGA
Sbjct: 102 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TPLM AA G + +V +LL +GA + ++AL+ AC G+TD+ +LL G +++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 591 -----STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
T L+ A G H V++LL+ +T +G ++ A G+ V ++ S+
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+N G TPLM+A A G AVV LL+ GA+ + + + L A S G+ + K+L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
L+ G +N + + L A + H+ V+ LL +GAD +TD + ++ A G+
Sbjct: 105 LDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 163
Query: 336 VEVAKLL 342
V +++
Sbjct: 164 RSVQQVI 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 510 GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G + V +FLL+NGA+ +L G + L A +G+ ++V+ LLD G V+ G T L
Sbjct: 63 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
Query: 567 TYACENGHTDVADLLLSYGAN 587
YA H +LL GA+
Sbjct: 123 LYAVHGNHVKCVKMLLESGAD 143
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 22/155 (14%)
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
H++E + L A G + +V FLL GAD + +AL A G+ ++ K+LLD
Sbjct: 47 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 106
Query: 345 SGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETT 404
G V+ Y + P L+ A VK VK LL G T
Sbjct: 107 CGV-DVNEYDWNGGTP-----------------LLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 405 DEGESLLSLACSAGYYELAQV----LLAMHANVED 435
D G + + LA + GY + QV LL + N+++
Sbjct: 149 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 183
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 651
T L+ AA G VV+ LL + ++AL+ AC G+TD+ +LL G +++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 652 -----STMLIEAAKGGHANVVQLLLD 672
T L+ A G H V++LL+
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLLE 139
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L+ A + G + V+ LL G ES LSLACS GY ++ ++LL +V +
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 62 IKGECTPLMEAA 73
G TPL+ A
Sbjct: 116 WNG-GTPLLYAV 126
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L+ A + G + V+ LL G ES LSLACS GY ++ ++LL +V +
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 438 IKGECTPLMEAA 449
G TPL+ A
Sbjct: 116 WNG-GTPLLYAV 126
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPLM AA+ G I +V L+ +GAD + L AC+ G+ +V++LL+CG +V +
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
++ NG TPL+ A HV K+LLE GA
Sbjct: 96 YDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
N S+ Q + G++ + + + ++ T +EG + L A + G + + LL A+
Sbjct: 1 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ G KG + L A S G+ +IV++L++ G DVN +G TPL+YA G H V++L
Sbjct: 61 QLLG-KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
LE GA+ ++G+ + A + G+ V +++
Sbjct: 120 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 248 NVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
NV +H +E G TPLM AA+ G + V + LL+ GA + +ESAL+LAC KG+ D+V
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIV 83
Query: 307 RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ LL G D T L+ A HV+ K+LL+SGA
Sbjct: 84 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TPLM AA G + +V +LL +GA + ++AL+ AC G+TD+ +LL G +++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 591 -----STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
T L+ A G H V++LL+ +T +G ++ A G+ V ++ S+
Sbjct: 96 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+N G TPLM+A A G AVV LL+ GA+ + + + L A S G+ + K+L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
L+ G +N + + L A + H+ V+ LL +GAD +TD + ++ A G+
Sbjct: 87 LDCGVDVNEYDWN-GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 145
Query: 336 VEVAKLL 342
V +++
Sbjct: 146 RSVQQVI 152
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 510 GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G + V +FLL+NGA+ +L G + L A +G+ ++V+ LLD G V+ G T L
Sbjct: 45 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
Query: 567 TYACENGHTDVADLLLSYGAN 587
YA H +LL GA+
Sbjct: 105 LYAVHGNHVKCVKMLLESGAD 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
H++E + L A G + +V FLL GAD + +AL A G+ ++ K+LLD
Sbjct: 29 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 88
Query: 345 SGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETT 404
G V+ Y + P L+ A VK VK LL G T
Sbjct: 89 CGV-DVNEYDWNGGTP-----------------LLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 405 DEGESLLSLACSAGYYELAQVL 426
D G + + LA + GY + QV+
Sbjct: 131 DSGYNSMDLAVALGYRSVQQVI 152
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 651
T L+ AA G VV+ LL + ++AL+ AC G+TD+ +LL G +++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 652 -----STMLIEAAKGGHANVVQLLLD 672
T L+ A G H V++LL+
Sbjct: 96 YDWNGGTPLLYAVHGNHVKCVKMLLE 121
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 363 KCERPSSISYTYSR---SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY 419
+ E+ + I++T L+ A + G + V+ LL G ES LSLACS GY
Sbjct: 20 RIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 79
Query: 420 YELAQVLLAMHANVEDRGIKGECTPLMEAA 449
++ ++LL +V + G TPL+ A
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNG-GTPLLYAV 108
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L+ A + G + V+ LL G ES LSLACS GY ++ ++LL +V +
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 62 IKGECTPLMEAA 73
G TPL+ A
Sbjct: 98 WNG-GTPLLYAV 108
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPLM AA+ G I +V L+ +GAD + L AC+ G+ +V++LL+CG +V +
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
++ NG TPL+ A HV K+LLE GA
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
N S+ Q + G++ + + + ++ T +EG + L A + G + + LL A+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ G KG + L A S G+ +IV++L++ G DVN +G TPL+YA G H V++L
Sbjct: 63 QLLG-KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
LE GA+ ++G+ + A + G+ V +++
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 248 NVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
NV +H +E G TPLM AA+ G + V + LL+ GA + +ESAL+LAC KG+ D+V
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIV 85
Query: 307 RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ LL G D T L+ A HV+ K+LL+SGA
Sbjct: 86 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TPLM AA G + +V +LL +GA + ++AL+ AC G+TD+ +LL G +++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 591 -----STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
T L+ A G H V++LL+ +T +G ++ A G+ V ++ S+
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+N G TPLM+A A G AVV LL+ GA+ + + + L A S G+ + K+L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
L+ G +N + + + L A + H+ V+ LL +GAD +TD + ++ A G+
Sbjct: 89 LDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147
Query: 336 VEVAKLL 342
V +++
Sbjct: 148 RSVQQVI 154
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 510 GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G + V +FLL+NGA+ +L G + L A +G+ ++V+ LLD G V+ G T L
Sbjct: 47 GQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
Query: 567 TYACENGHTDVADLLLSYGAN 587
YA H +LL GA+
Sbjct: 107 LYAVHGNHVKCVKMLLESGAD 127
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
H++E + L A G + +V FLL GAD + +AL A G+ ++ K+LLD
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 345 SGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETT 404
G V+ Y + P L+ A VK VK LL G T
Sbjct: 91 CGV-DVNEYDWNGGTP-----------------LLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 405 DEGESLLSLACSAGYYELAQVL 426
D G + + LA + GY + QV+
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVI 154
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 651
T L+ AA G VV+ LL + ++AL+ AC G+TD+ +LL G +++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 652 -----STMLIEAAKGGHANVVQLLLD 672
T L+ A G H V++LL+
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLE 123
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 363 KCERPSSISYTYSR---SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY 419
+ E+ + I++T L+ A + G + V+ LL G ES LSLACS GY
Sbjct: 22 RIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81
Query: 420 YELAQVLLAMHANVEDRGIKGECTPLMEAA 449
++ ++LL +V + G TPL+ A
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNG-GTPLLYAV 110
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L+ A + G + V+ LL G ES LSLACS GY ++ ++LL +V +
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 62 IKGECTPLMEAA 73
G TPL+ A
Sbjct: 100 WNG-GTPLLYAV 110
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQ 219
L +AC G L+ +ED+ I+G T L+ A + + I L++ G++VN +
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
SG TPLM++ G+ + LLE GANV D N G TPL+ A+ G + K LLE G
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 280 AGIN 283
A I+
Sbjct: 158 ADIS 161
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 1/155 (0%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
N L+ AC G + KL+ + + EG + L A +A+ LL+ +NV
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ G+ TPLM + G+ E+ L+ HGA+VN ++ G TPL+ A G +V+ L
Sbjct: 95 NTKDFSGK-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
LE GA++ + G T A G V KI E
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 3/140 (2%)
Query: 210 INHGADV--NGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAG 267
IN D N + S TPLM AC G E + L+E +ED + G T L+ A
Sbjct: 20 INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNN 79
Query: 268 HVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
+G+A+ LL G+ +NT K + L + G+ +M FLL GA+ + E T L
Sbjct: 80 RLGIAEKLLSKGSNVNTKDFSGK-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Query: 328 MEASMDGHVEVAKLLLDSGA 347
+ AS G E+ K LL+ GA
Sbjct: 139 IVASKYGRSEIVKKLLELGA 158
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 117 ENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
E+ + +L+ A + + +KLL++G +V+ G++ L + GY E++ LL
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL 121
Query: 177 AMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHE 236
ANV DR ++GE TPL+ A+ G EIV+ L+ GAD++ + +G T A G +
Sbjct: 122 EHGANVNDRNLEGE-TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 237 AVVRVLLE 244
V+++ E
Sbjct: 181 EVIKIFTE 188
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPLM A G + L+ + + + G+T L++A + LL G+NV
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ +G TPLM + G+ ++ LLE+GA +N + E E+ L +A G ++V+ LL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE-GETPLIVASKYGRSEIVKKLLE 155
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
GAD + TA A + G EV K+ +
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 33/181 (18%)
Query: 443 TPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXX 502
TPLM A G + +++ V + + + DK + G S LI K N
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLE----DKDIEG---STALIWAVKNNR--------- 80
Query: 503 XXXXCCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKT 559
L +A+ LL G+N+ + TPLM + G+ E+ +LL+ GA V+ +
Sbjct: 81 ---------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Query: 560 QTGDTALTYACENGHTDVADLLLSYGANL---DNSTMLIEAAKG--GHANVVQLLLDFPR 614
G+T L A + G +++ LL GA++ D + + EA+ G V+++ + R
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Query: 615 S 615
+
Sbjct: 192 A 192
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 375 SRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 434
S +L+ A + + +KLL++G +V+ G++ L + GY E++ LL ANV
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 435 DRGIKGECTPLMEAASSGR 453
DR ++GE TPL+ A+ GR
Sbjct: 129 DRNLEGE-TPLIVASKYGR 146
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L+ A + + +KLL++G +V+ G++ L + GY E++ LL ANV DR
Sbjct: 71 ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR 130
Query: 61 GIKGECTPLMEAASSG 76
++GE TPL+ A+ G
Sbjct: 131 NLEGE-TPLIVASKYG 145
Score = 36.2 bits (82), Expect = 0.071, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 649
N T L+ A G N + L++ + K G TAL +A +N +A+ LLS G+N+
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 650 DN-----STMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHA 704
+ T L+ + G++ + LL+ + V+
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLE-------------------------HGANVND 129
Query: 705 KTQTGDTALTYACENGHTDVADLLLSYGANLRNR 738
+ G+T L A + G +++ LL GA++ R
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 57/194 (29%)
Query: 373 TYSRS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
+Y+R+ L+ AC G + KL+ + + EG + L A +A+ LL+ +
Sbjct: 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
NV + G+ TPLM + G Y+ +F +L GA +
Sbjct: 93 NVNTKDFSGK-TPLMWSIIFG-----------YSEMSYF-------------LLEHGANV 127
Query: 492 NAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDS 551
N + L TPL+ A++ G E+V+ LL+
Sbjct: 128 N-------------------------------DRNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 552 GAQVHAKTQTGDTA 565
GA + A+ TG TA
Sbjct: 157 GADISARDLTGLTA 170
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 121/275 (44%), Gaps = 23/275 (8%)
Query: 11 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 70
V+ V+ LL G VH G L ACS G+YE+ ++LL A V + + TPL
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLH 129
Query: 71 EAASSG---FGKLATGDGKLADPEVLRRLTSSVSCALDEAA--AALTRMRNENPRPQNER 125
EAAS L G ADP + V+C A A +R
Sbjct: 130 EAASKNRVEVCSLLLSHG--ADPTL-------VNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY---YELAQVLLAMHANV 182
SL+QA + D+ VKK L + E+ L A ++ + ++A++LL ANV
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
++ K TPL AA +++ +L HGA +N S G T L A GH R+L
Sbjct: 241 NEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
L G++ + G T AA G+ V +IL E
Sbjct: 300 LSYGSDPSIISLQGFT----AAQMGNEAVQQILSE 330
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ TPL AA + IV+LL+ HGADV+ + G PL AC+ GH V +LL+ GA V
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAG---INTH-----------------SNEF 289
+ TPL EAAS V V +LL +GA +N H + EF
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 290 KESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHV---EVAKLLLDSG 346
K +L A + L V+ L+ + TAL A H +VA+LLL G
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 347 A 347
A
Sbjct: 238 A 238
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 26/236 (11%)
Query: 136 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
V+ V+ LL G VH G L ACS G+YE+ ++LL A V + + TPL
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLH 129
Query: 196 EAASSGFIEIVRLLINHGAD---VN--GQSSSGNTP----------------LMYACAGG 234
EAAS +E+ LL++HGAD VN G+S+ P L+ A
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Query: 235 HEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVG---VAKILLEYGAGINTHSNEFKE 291
A V+ L ++ T L A ++ H VA++LL GA +N + +F
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM- 248
Query: 292 SALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ L +A + H D++ L GA TAL A++ GH++ +LLL G+
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 128/295 (43%), Gaps = 48/295 (16%)
Query: 387 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 446
V+ V+ LL G VH G L ACS G+YE+ ++LL A V + + TPL
Sbjct: 71 VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLH 129
Query: 447 EAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXXXXXXXXXXX 506
EAAS R E S H P + +G +++V + P +
Sbjct: 130 EAASKNRV----EVCSLLLSHGADPTLVNCHG-KSAVDMAPTPE---------------- 168
Query: 507 CCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
L+ E + L++AA+E L V+ L + Q+ +TAL
Sbjct: 169 ------------LRERLTYEFKGHS-LLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215
Query: 567 TYACENGHT---DVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
A + H VA+LLL GAN+ D T L AA+ H +V+++L ++A
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIE---AAKGGHANVVQLL 670
G TAL A GH LLLSYG+ D S + ++ AA+ G+ V Q+L
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMGNEAVQQIL 328
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA--- 586
STPL AA + +V+ LL GA VHAK + G L AC GH +V +LLL +GA
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Query: 587 --NLDNSTMLIEAAKGGHANVVQLLL 610
+L T L EAA V LLL
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLL 144
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 62/258 (24%)
Query: 514 VADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYAC 570
+ LL++GA++ + G PL A GH E+ LL GA V+A T L A
Sbjct: 73 IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Query: 571 ENGHTDVADLLLSYGAN-----------LDNSTM---------------LIEAAKGGHAN 604
+V LLLS+GA+ +D + L++AA+
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLA 192
Query: 605 VVQLLLDFPRSVHAKTQTGDTALTYACENGHT---DVADLLLSYGANL-----DNSTMLI 656
V+ L + Q+ +TAL A + H VA+LLL GAN+ D T L
Sbjct: 193 KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH 252
Query: 657 EAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYA 716
AA+ H +V+++L G K ++A G TAL A
Sbjct: 253 VAAERAHNDVMEVL-----------------------HKHGAK--MNALDSLGQTALHRA 287
Query: 717 CENGHTDVADLLLSYGAN 734
GH LLLSYG++
Sbjct: 288 ALAGHLQTCRLLLSYGSD 305
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA-- 647
ST L AA +VQLLL VHAK + G L AC GH +V +LLL +GA
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 648 ---NLDNSTMLIEAAKGGHANVVQLLL 671
+L T L EAA V LLL
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLL 144
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 513 DVADFLLKNGANI--ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYAC 570
D L+ NGA + ++PL AAQ GH LL +G A+T+ T L A
Sbjct: 16 DEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75
Query: 571 ENGHTDVADLLLSYGANLDNSTMLI-----EAAKGGHANVVQLLLDFPRSVHAKTQTGDT 625
GH ++ ++LL +GA+++ ML A + H VV+LL+ + VH +++ T
Sbjct: 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135
Query: 626 ALTYACENGHTDVADLL 642
A + +NG+ D+A++L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L+EAA+ G + VR L+ +GA G + L A + GH ++LL G + D
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
+ T L AA GHAN+V++LL V+AK TAL +A E+ H +V +LL+ YGA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 648 NLDNSTMLIEAA 659
++ + + A
Sbjct: 125 DVHTQSKFCKTA 136
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVE 183
+ L++A G V+ L+ G TTD G S L LA G++ +VLL + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
R K + TPL AAS G IV +L+ HGADVN + T L +A H+ VV +L+
Sbjct: 62 AR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+ GA+V ++ T + G+ +A+IL
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 4/156 (2%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D G+ LL A AG + ++L+A A + +PL AA G +L+ G
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGAPFTTDWLG--TSPLHLAAQYGHFSTTEVLLRAG 57
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
+ ++ TPL A + GH +V VLL+ GA+V + T L A H V +
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+L++YGA ++T S +F ++A ++ G+ D+ L
Sbjct: 118 LLIKYGADVHTQS-KFCKTAFDISIDNGNEDLAEIL 152
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 31/151 (20%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
L+EAA+ G + V++L+ + G + L A + GH ++LL G + D
Sbjct: 6 LLEAARAGQDDEVRILM-ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQT 708
+ T L AA GHAN+V++LL + V+AK
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLK-------------------------HGADVNAKDML 99
Query: 709 GDTALTYACENGHTDVADLLLSYGANLRNRT 739
TAL +A E+ H +V +LL+ YGA++ ++
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 34/172 (19%)
Query: 566 LTYACENGHTDVADLLLSYGANLDNSTM----LIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
L A G D +L++ GA + L AA+ GH + ++LL S A+T+
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLDNSTMLI-----EAAKGGHANVVQLLLDFPRS 676
T L A GH ++ ++LL +GA+++ ML A + H VV+LL+ +
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--- 122
Query: 677 VIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLL 728
+ VH +++ TA + +NG+ D+A++L
Sbjct: 123 ----------------------GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA T + S L LA GH LL AG ++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGA 347
T T L A+ +GH + ++LL GA
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGA 91
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 6/148 (4%)
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRS-VHETTDEGESLLSLACSAGYYELAQVLLAMH 179
P+ + C +G+ V+ L + +++ D G S L AC G + ++L+
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 180 A--NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEA 237
A NV +RG + TPL AAS G +IV+ L+ + AD+N + GN PL YAC G +
Sbjct: 63 ARINVMNRG---DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 238 VVRVLLECGANVEDHNENGHTPLMEAAS 265
V L+ GA V N+ G P+ +A +
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKA 147
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 206 VRL-LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAA 264
VRL L N D+N G +PL +AC G AVV +L+ GA + N TPL AA
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 265 SAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
S GH + + LL+Y A IN NE L AC+ G + L++ GA
Sbjct: 81 SHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 538 QEGHLELVRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NS 591
+EG+ VR LD+ ++ G + L +AC G + V ++L+ GA ++ +
Sbjct: 14 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH ++VQ LL + ++A + G+ L YAC G VA+ L++ GA
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+PL A G +V +LI GA +N + +TPL A + GH +V+ LL+ A++
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
NE+G+ PL A G VA+ L+ GA
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 231 CAGGHEAVVRVLLECGAN-VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEF 289
C G+ VR+ L+ N + +++G +PL A G V ++L+ GA IN N
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRG 71
Query: 290 KESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQS 349
++ L LA GH D+V+ LL AD + + L A G +VA+ L+ +GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL- 130
Query: 350 VSAYARHDFFPNDKCERP 367
VS ++ P DK + P
Sbjct: 131 VSICNKYGEMPVDKAKAP 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 507 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G V + L+ GA I + G TPL AA GH ++V+ LL A ++A + G+
Sbjct: 47 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 564 TALTYACENGHTDVADLLLSYGA 586
L YAC G VA+ L++ GA
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGA 129
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 31/139 (22%)
Query: 601 GHANVVQLLLDFPRS-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTM 654
G+A V+L LD + ++ G + L +AC G + V ++L+ GA ++ + T
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 655 LIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALT 714
L AA GH ++VQ LL + K+ ++A + G+ L
Sbjct: 76 LHLAASHGHRDIVQKLLQY-------------------------KADINAVNEHGNVPLH 110
Query: 715 YACENGHTDVADLLLSYGA 733
YAC G VA+ L++ GA
Sbjct: 111 YACFWGQDQVAEDLVANGA 129
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 597 AAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
A + G + VV++L+ ++ + DT L A +GH D+ LL Y A+++
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 131 CSDGDVKTVKKLLTEGRS-VHETTDEGESLLSLACSAGYYELAQVLLAMHA--NVEDRGI 187
C +G+ V+ L + +++ D G S L AC G + ++L+ A NV +RG
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG- 66
Query: 188 KGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
+ TPL AAS G +IV+ L+ + AD+N + GN PL YAC G + V L+ GA
Sbjct: 67 --DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 248 NVEDHNENGHTPLMEAAS 265
V N+ G P+ +A +
Sbjct: 125 LVSICNKYGEMPVDKAKA 142
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 206 VRL-LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAA 264
VRL L N D+N G +PL +AC G AVV +L+ GA + N TPL AA
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 265 SAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
S GH + + LL+Y A IN NE L AC+ G + L++ GA
Sbjct: 76 SHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 538 QEGHLELVRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NS 591
+EG+ VR LD+ ++ G + L +AC G + V ++L+ GA ++ +
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
T L AA GH ++VQ LL + ++A + G+ L YAC G VA+ L++ GA
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+PL A G +V +LI GA +N + +TPL A + GH +V+ LL+ A++
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGA 280
NE+G+ PL A G VA+ L+ GA
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 231 CAGGHEAVVRVLLECGAN-VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEF 289
C G+ VR+ L+ N + +++G +PL A G V ++L+ GA IN N
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRG 66
Query: 290 KESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQS 349
++ L LA GH D+V+ LL AD + + L A G +VA+ L+ +GA
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL- 125
Query: 350 VSAYARHDFFPNDKCERP 367
VS ++ P DK + P
Sbjct: 126 VSICNKYGEMPVDKAKAP 143
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 507 CCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C G V + L+ GA I + G TPL AA GH ++V+ LL A ++A + G+
Sbjct: 42 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 564 TALTYACENGHTDVADLLLSYGA 586
L YAC G VA+ L++ GA
Sbjct: 102 VPLHYACFWGQDQVAEDLVANGA 124
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 31/139 (22%)
Query: 601 GHANVVQLLLDFPRS-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTM 654
G+A V+L LD + ++ G + L +AC G + V ++L+ GA ++ + T
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 655 LIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALT 714
L AA GH ++VQ LL + K+ ++A + G+ L
Sbjct: 71 LHLAASHGHRDIVQKLLQY-------------------------KADINAVNEHGNVPLH 105
Query: 715 YACENGHTDVADLLLSYGA 733
YAC G VA+ L++ GA
Sbjct: 106 YACFWGQDQVAEDLVANGA 124
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 597 AAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
A + G + VV++L+ ++ + DT L A +GH D+ LL Y A+++
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVEDHNENGHTPLMEAASAG---HVGV 271
VN S+GNT L Y+ + + VV+ LL+ G V+ N G++P+M A A +
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 272 AKILLEYGAG-INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEA 330
+L + G IN +++ ++AL LA G +D+V+ LL+ AD + D+ TALM A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 331 SMDGHVEVAKLLL 343
GH E+A LLL
Sbjct: 224 CEHGHKEIAGLLL 236
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
N+ + + T LM A S G +++V+ L+ ADVN Q G+T LM AC GH+ +
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 241 VLL---ECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+LL C ++ D +G T LM A AG +A +L
Sbjct: 234 LLLAVPSCDISLTDR--DGSTALMVALDAGQSEIASML 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA---- 586
T LM A G +++V+ LL A V+ + G TAL ACE+GH ++A LLL+ +
Sbjct: 185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS 244
Query: 587 --NLDNSTMLIEAAKGGHANVVQLL 609
+ D ST L+ A G + + +L
Sbjct: 245 LTDRDGSTALMVALDAGQSEIASML 269
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGF-----IEIVRLLI 210
G + L + S + + Q LL D+ + +P+M A + IE V L
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 211 NHGADVNGQSS-SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
G ++N ++S +G T LM A + G VV+ LL C A+V +++G T LM A GH
Sbjct: 171 RLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK 229
Query: 270 GVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+A +LL + + ++ +AL +A G ++ L S
Sbjct: 230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%)
Query: 192 TPLMEAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEA-----VVRVLLEC 245
T L + S +V+ L++ G V+ Q+ +G +P+M + V L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
G ++ G T LM A S G V V K LL A +N ++ +AL AC GH ++
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEI 231
Query: 306 VRFLLSAGADQEHKTD-EMHTALMEASMDGHVEVAKLL 342
LL+ + TD + TALM A G E+A +L
Sbjct: 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGA-QVHAKTQTGDTALTY---ACENGHTDVADLL---- 581
+T L + + +V+ LLDSG +V + + G + + A D+ +L
Sbjct: 112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR 171
Query: 582 ---LSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDV 638
++ A+ T L+ A G +VV+ LL V+ + G TAL ACE+GH ++
Sbjct: 172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231
Query: 639 ADLLLSYGA------NLDNSTMLIEAAKGGHANVVQLL 670
A LLL+ + + D ST L+ A G + + +L
Sbjct: 232 AGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 49/217 (22%)
Query: 539 EGHLELVRYLLDSGAQVHAKT---------QTGDTALTYACENGHTDVADLLLSYGA-NL 588
+ H ELVR L + + A+ G+TAL Y+ + + V LL G +
Sbjct: 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV 138
Query: 589 D-------NSTMLIEAAKGGHANVVQLLLDFPR--SVHAK-TQTGDTALTYACENGHTDV 638
D + ML A + ++ +L R +++AK +Q G TAL A +G DV
Sbjct: 139 DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 639 ADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGXXXXXXXXXXXXX 693
LL+ A++ D ST L+ A + GH + LLL P
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP------------------- 239
Query: 694 XXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLS 730
+ + G TAL A + G +++A +L S
Sbjct: 240 -----SCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 106 EAAAALTRMRNENPRPQN--ERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLA 163
E L R+ N N + + +L+ A S G V VK LL V+ D+G + L A
Sbjct: 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA 223
Query: 164 CSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
C G+ E+A +LLA+ + + T LM A +G EI +L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L+ A S G V VK LL V+ D+G + L AC G+ E+A +LLA+ +
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 61 GIKGECTPLMEAASSGFGKLAT 82
+ T LM A +G ++A+
Sbjct: 246 TDRDGSTALMVALDAGQSEIAS 267
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 324 HTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFP-----------NDKCE------R 366
+TAL + + V + LLDSG V R + P D E R
Sbjct: 112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFR 171
Query: 367 PSSISYTYSRS----LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYEL 422
+I+ S++ L+ A S G V VK LL V+ D+G + L AC G+ E+
Sbjct: 172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231
Query: 423 AQVLLAM 429
A +LLA+
Sbjct: 232 AGLLLAV 238
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVED 184
S+ Q + G++ +K+ L +G ++ DE G + L A + G E + LL A+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ E L A++ G+ +IV LL+ D+N +G TPL+YA G H V LL
Sbjct: 65 LAKERESA-LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
GA++ ++G+TP+ A + G+ V +++
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
++RG TPL+ A++ G IE VR L+ GAD + + + L A GG+ +V +L
Sbjct: 33 DERGF----TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSN 287
LE ++ ++ NG TPL+ A HV + LL GA + T ++
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL+ A+ G +E VR+LL+ GA H + ++AL+ A G+TD+ LLL ++
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ T L+ A +G H V+ LL + + +G T + A G+ V ++ ++
Sbjct: 98 YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Query: 646 GANLDNSTML 655
L S ++
Sbjct: 158 ILKLFQSNLV 167
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Query: 189 GECTPLMEAASSGFIEIVRLLINHGAD-VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
G+ + + A+ G ++ ++ + G + VN G TPL++A A G VR LLE GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+ + + L A++ G+ + +LLE IN + + L A H+ V
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVKCVE 119
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
LL+ GAD + D +T + A G+ +V +++
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 262 EAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTD 321
+ A+ G + K L G + +E + L A G ++ VRFLL GAD
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 322 EMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA 381
E +AL AS G+ ++ LLL+ ++ Y + L+ A
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDV-DINIY-----------------DWNGGTPLLYA 109
Query: 382 CSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
VK V+ LL G + D G + + LA + GY ++ QV+
Sbjct: 110 VRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 364 CERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELA 423
+P +T L+ A + G+++TV+ LL G H E ES LSLA + GY ++
Sbjct: 29 VNKPDERGFT---PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
Query: 424 QVLLAMHANVEDRGIKGECTPLMEAA 449
+LL ++ G TPL+ A
Sbjct: 86 GLLLERDVDINIYDWNG-GTPLLYAV 110
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L+ A + G+++TV+ LL G H E ES LSLA + GY ++ +LL ++
Sbjct: 39 PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 61 GIKGECTPLMEAA 73
G TPL+ A
Sbjct: 99 DWNG-GTPLLYAV 110
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVED 184
S+ Q + G++ +K+ L +G ++ DE G + L A + G E + LL A+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ E L A++ G+ +IV LL+ D+N +G TPL+YA G H V LL
Sbjct: 65 LAKERESA-LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
GA++ ++G+TP+ A + G+ V +++
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
++RG TPL+ A++ G IE VR L+ GAD + + + L A GG+ +V +L
Sbjct: 33 DERGF----TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSN 287
LE ++ ++ NG TPL+ A HV + LL GA + T ++
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD 133
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL+ A+ G +E VR+LL+ GA H + ++AL+ A G+TD+ LLL ++
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ T L+ A G H V+ LL + + +G T + A G+ V ++ ++
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Query: 646 GANLDNSTML 655
L S ++
Sbjct: 158 ILKLFQSNLV 167
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 189 GECTPLMEAASSGFIEIVRLLINHGAD-VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
G+ + + A+ G ++ ++ + G + VN G TPL++A A G VR LLE GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+ + + L A++ G+ + +LLE IN + + L A + H+ V
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVHGNHVKCVE 119
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
LL+ GAD + D +T + A G+ +V +++
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 262 EAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTD 321
+ A+ G + K L G + +E + L A G ++ VRFLL GAD
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 322 EMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQA 381
E +AL AS G+ ++ LLL+ ++ Y + L+ A
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDV-DINIY-----------------DWNGGTPLLYA 109
Query: 382 CSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
VK V+ LL G + D G + + LA + GY ++ QV+
Sbjct: 110 VHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 364 CERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELA 423
+P +T L+ A + G+++TV+ LL G H E ES LSLA + GY ++
Sbjct: 29 VNKPDERGFT---PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
Query: 424 QVLLAMHANVEDRGIKGECTPLMEAA 449
+LL ++ G TPL+ A
Sbjct: 86 GLLLERDVDINIYDWNG-GTPLLYAV 110
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L+ A + G+++TV+ LL G H E ES LSLA + GY ++ +LL ++
Sbjct: 39 PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 61 GIKGECTPLMEAA 73
G TPL+ A
Sbjct: 99 DWNG-GTPLLYAV 110
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 188 KGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
+GE T L A+ G I V L+ +G+D N + +G TPL AC GH VV +LL+ A
Sbjct: 9 RGE-TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGIN 283
V +PL +AA GHV + K+LL YGA N
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 510 GFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G + ++LL+NG++ + TPL EA GHL++V LL A V+ D+ L
Sbjct: 21 GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPL 80
Query: 567 TYACENGHTDVADLLLSYGA 586
A +NGH D+ LLLSYGA
Sbjct: 81 HDAAKNGHVDIVKLLLSYGA 100
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 223 GNTPLMYACAGGHEAVVRVLLECGA--NVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
G T L A G V LL+ G+ NV+DH G TPL EA + GH+ V ++LL++ A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA--GWTPLHEACNHGHLKVVELLLQHKA 67
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ 316
+NT + +S L A GH+D+V+ LLS GA +
Sbjct: 68 LVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASR 102
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD- 589
T L A+ +G + V YLL +G+ + K G T L AC +GH V +LLL + A ++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 590 ----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTY 629
N + L +AAK GH ++V+LLL + S +A G + Y
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 152 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE--CTPLMEAASSGFIEIVRLL 209
T GE+LL +A G + LL N D +K TPL EA + G +++V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQ---NGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
+ H A VN ++PL A GH +V++LL GA
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A GD+ +V+ LL G + G + L AC+ G+ ++ ++LL A V G +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMY 229
+ +PL +AA +G ++IV+LL+++GA N + G P+ Y
Sbjct: 77 D-SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD- 650
T+L A+ G V+ LL + K G T L AC +GH V +LLL + A ++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 651 ----NSTMLIEAAKGGHANVVQLLLDF 673
N + L +AAK GH ++V+LLL +
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
GI+ +N E+ L +A KG + V +LL G+D K T L EA GH++V +
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 341 LLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRS 399
LLL +H N + Y L A +G V VK LL+ G S
Sbjct: 61 LLL-----------QHKALVN-------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 31/120 (25%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKGGHANVVQLLLDFPRSV 677
G+T L A G + LL G++ + T L EA GH VV+LLL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ----- 64
Query: 678 IGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRN 737
K+ V+ D+ L A +NGH D+ LLLSYGA+ RN
Sbjct: 65 --------------------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RN 103
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 381 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 440
A GD+ +V+ LL G + G + L AC+ G+ ++ ++LL A V G +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 441 ECTPLMEAASSGR 453
+ +PL +AA +G
Sbjct: 77 D-SPLHDAAKNGH 88
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A GD+ +V+ LL G + G + L AC+ G+ ++ ++LL A V G +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 65 ECTPLMEAASSG 76
+ +PL +AA +G
Sbjct: 77 D-SPLHDAAKNG 87
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 113/264 (42%), Gaps = 29/264 (10%)
Query: 53 MHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD--PEVLRRLT---SSVSCALDEA 107
M NV RG G TPLM A+ SG G L TG+ + + P V+ +S+ D
Sbjct: 1 MDVNV--RGPDG-FTPLMIASCSG-GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT 56
Query: 108 AAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG 167
A + R + L++A +D +++ + G + L A SA
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQD---------------NMGRTPLHAAVSAD 101
Query: 168 YYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
+ Q+L+ A D + TPL+ AA ++ LIN ADVN G + L
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Query: 228 MYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG--INTH 285
+A A + VLL+ GAN + N TPL AA G AK+LL++ A I H
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Query: 286 SNEFKESALTLACYKGHLDMVRFL 309
+ +A + H D+VR L
Sbjct: 222 MDRLPRD---IAQERMHHDIVRLL 242
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NV 249
T L AA+ + + L+ AD N Q + G TPL A + + V ++L+ A ++
Sbjct: 58 ATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ +G TPL+ AA G+ + L+ A +N ++ +SAL A ++D L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVL 176
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
L GA+++ + + T L A+ +G E AK+LLD
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 374 YSRSLVQACSDGDVKT------------VKKLLTEGRSVHETTDE-GESLLSLACSAGYY 420
++ ++ +CS G ++T + + +G S+H TD G + L LA +
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRS 70
Query: 421 ELAQVLL--AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARH-DFFPNDKSVN 477
+ A+ LL + AN++D + TPL A S+ Q + A D +D +
Sbjct: 71 DAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127
Query: 478 GLQASVILIPGAK---INAHXXXXXXXXXXXXCC-----GGFLDVADFLLKNGANIELGA 529
+ A+ + + G IN+H +D A LLKNGAN ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 530 S---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
+ TPL AA+EG E + LLD A A E H D+ LL
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 90 PEVLRRLTSS--VSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGR 147
P V+R L ++ ALD + E+ P R+L+ + + G + E R
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL------EAR 112
Query: 148 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVR 207
+ +G + L +A + E Q+LL A+++ IK +PL+ A + + +V+
Sbjct: 113 NY-----DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 208 LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAAS 265
LL+ HGA+VN Q SG++ L A G +VR L+ GA+ N + TPLM A S
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA---- 247
TPL A + +VRLL+ GA G T AC +R LL+ A
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
++E N +G T L A + ++LLE GA I+ + S L A L MV+
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQS 349
LL GA+ + +AL AS G + + + L+ SGA S
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN-ENGHTPLMEAASAGHVGVAK 273
D+ ++ G T L A + V++LLE GA+++ + ++G +PL+ A + + +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD 333
+LL++GA +N SAL A +G L +VR L+ +GAD K T LM A
Sbjct: 168 LLLQHGANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226
Query: 334 GHVEVAK 340
+++ +
Sbjct: 227 RVIDILR 233
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA---- 586
TPL A +VR L+ +GA A + G TA ACE+ LL A
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 587 -----NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHA-KTQTGDTALTYACENGHTDVAD 640
N D T L A VQLLL+ + A ++G + L +A EN +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 641 LLLSYGANLD 650
LLL +GAN++
Sbjct: 168 LLLQHGANVN 177
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 512 LDVADFLLKNGANIE---LGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTY 568
L + LL++GAN+ S+ L A+ G L LVR L+ SGA K DT L
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 569 ACENGHTDV 577
A D+
Sbjct: 223 ARSRRVIDI 231
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL A + EI L+ G D + GNTPL AC G A V VL +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 252 H------NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
H N NGHT L A+ G++G+ ++L+ GA +N +AL LA + D+
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 306 VRFLLSAGAD 315
V LL GAD
Sbjct: 167 VSLLLKCGAD 176
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 156 GESLLSLACSAGYYELAQVLLA------MHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
G + L LAC G VL +H+ ++ G T L A+ G++ IV LL
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH-TCLHLASIHGYLGIVELL 136
Query: 210 INHGADVNGQSS-SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
++ GADVN Q +G T L A + +V +LL+CGA+V G++P
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL-------- 581
TPL A E+ LL +G + G+T L ACE G +L
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 582 ---LSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ-TGDTALTYACENGHTD 637
+ N + T L A+ G+ +V+LL+ V+A+ G TAL A + + D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 638 VADLLLSYGANLDNST 653
+ LLL GA+++ T
Sbjct: 166 LVSLLLKCGADVNRVT 181
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 112/264 (42%), Gaps = 29/264 (10%)
Query: 53 MHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD--PEVLRRLT---SSVSCALDEA 107
M NV RG G TPLM A+ SG G L TG+ + + P V+ +S+ D
Sbjct: 1 MDVNV--RGPDG-FTPLMIASCSG-GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT 56
Query: 108 AAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG 167
+ R + L++A +D +++ + G + L A SA
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQD---------------NMGRTPLHAAVSAD 101
Query: 168 YYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
+ Q+L+ A D + TPL+ AA ++ LIN ADVN G + L
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Query: 228 MYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG--INTH 285
+A A + VLL+ GAN + N TPL AA G AK+LL++ A I H
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221
Query: 286 SNEFKESALTLACYKGHLDMVRFL 309
+ +A + H D+VR L
Sbjct: 222 MDRLPRD---IAQERMHHDIVRLL 242
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVE 250
T L AA + + L+ AD N Q + G TPL A + + V ++L+ A +++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+G TPL+ AA G+ + L+ A +N ++ +SAL A ++D LL
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
GA+++ + + T L A+ +G E AK+LLD
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 30/235 (12%)
Query: 374 YSRSLVQACSDGDVKT------------VKKLLTEGRSVHETTDE-GESLLSLACSAGYY 420
++ ++ +CS G ++T + + +G S+H TD GE+ L LA
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70
Query: 421 ELAQVLL--AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARH-DFFPNDKSVN 477
+ A+ LL + AN++D + TPL A S+ Q + A D +D +
Sbjct: 71 DAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127
Query: 478 GLQASVILIPGAK---INAHXXXXXXXXXXXXCC-----GGFLDVADFLLKNGANIELGA 529
+ A+ + + G IN+H +D A LLKNGAN ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 530 S---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
+ TPL AA+EG E + LLD A A E H D+ LL
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 215 DVNGQSSSGNTPLMYA-CAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
DVN + G TPLM A C+GG LE G + E+ E A A V
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGG-------LETGNSEEE----------EDAPA----VIS 40
Query: 274 ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD 333
+ GA ++ ++ E+AL LA D + LL A AD + + T L A
Sbjct: 41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100
Query: 334 GHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI----SYTYSRSLVQACSD----- 384
V ++L+ + A + A P R + S + V A D
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160
Query: 385 -------GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
+V LL G + + E+ L LA G YE A+VLL AN
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 112/264 (42%), Gaps = 29/264 (10%)
Query: 53 MHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD--PEVLRRLT---SSVSCALDEA 107
M NV RG G TPLM A+ SG G L TG+ + + P V+ +S+ D
Sbjct: 2 MDVNV--RGPDG-FTPLMIASCSG-GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT 57
Query: 108 AAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG 167
+ R + L++A +D +++ + G + L A SA
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQD---------------NMGRTPLHAAVSAD 102
Query: 168 YYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
+ Q+L+ A D + TPL+ AA ++ LIN ADVN G + L
Sbjct: 103 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Query: 228 MYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG--INTH 285
+A A + VLL+ GAN + N TPL AA G AK+LL++ A I H
Sbjct: 163 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 222
Query: 286 SNEFKESALTLACYKGHLDMVRFL 309
+ +A + H D+VR L
Sbjct: 223 MDRLPRD---IAQERMHHDIVRLL 243
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVE 250
T L AA + + L+ AD N Q + G TPL A + + V ++L+ A +++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+G TPL+ AA G+ + L+ A +N ++ +SAL A ++D LL
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLL 178
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
GA+++ + + T L A+ +G E AK+LLD
Sbjct: 179 KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 30/238 (12%)
Query: 374 YSRSLVQACSDGDVKT------------VKKLLTEGRSVHETTDE-GESLLSLACSAGYY 420
++ ++ +CS G ++T + + +G S+H TD GE+ L LA
Sbjct: 12 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 71
Query: 421 ELAQVLL--AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARH-DFFPNDKSVN 477
+ A+ LL + AN++D + TPL A S+ Q + A D +D +
Sbjct: 72 DAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 128
Query: 478 GLQASVILIPGAK---INAHXXXXXXXXXXXXCC-----GGFLDVADFLLKNGANIELGA 529
+ A+ + + G IN+H +D A LLKNGAN ++
Sbjct: 129 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 188
Query: 530 S---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
+ TPL AA+EG E + LLD A A E H D+ LL Y
Sbjct: 189 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 246
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 89/237 (37%), Gaps = 38/237 (16%)
Query: 213 GADVNGQSSSGNTPLMYA-CAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGV 271
G DVN + G TPLM A C+GG LE G + E+ E A A V
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGG-------LETGNSEEE----------EDAPA----V 39
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
+ GA ++ ++ E+AL LA D + LL A AD + + T L A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 332 MDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI----SYTYSRSLVQACSD--- 384
V ++L+ + A + A P R + S + V A D
Sbjct: 100 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 159
Query: 385 ---------GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
+V LL G + + E+ L LA G YE A+VLL AN
Sbjct: 160 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL A + EI L+ G D + GNTPL AC G A V VL +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 252 H------NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
H N NGHT L A+ G++G+ ++L+ GA +N +AL LA + D+
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 306 VRFLLSAGAD 315
V LL GAD
Sbjct: 164 VSLLLKCGAD 173
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 155 EGESLLSLACSAGYYELAQVLLA------MHANVEDRGIKGECTPLMEAASSGFIEIVRL 208
G + L LAC G VL +H+ ++ G T L A+ G++ IV L
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH-TCLHLASIHGYLGIVEL 132
Query: 209 LINHGADVNGQSS-SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
L++ GADVN Q +G T L A + +V +LL+CGA+V G++P
Sbjct: 133 LVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL-------- 581
TPL A E+ LL +G + G+T L ACE G +L
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 582 ---LSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ-TGDTALTYACENGHTD 637
+ N + T L A+ G+ +V+LL+ V+A+ G TAL A + + D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 638 VADLLLSYGANLDNST 653
+ LLL GA+++ T
Sbjct: 163 LVSLLLKCGADVNRVT 178
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 140 KKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAAS 199
K+LL + G + L A SA + Q+LL A D + TPL+ AA
Sbjct: 39 KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 200 SGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
++ LIN ADVN G + L +A A + VLL+ GAN + N TP
Sbjct: 99 LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 260 LMEAASAGHVGVAKILLEYGAG--INTHSNEFKESALTLACYKGHLDMVRFL 309
L AA G AK+LL++ A I H + +A + H D+VR L
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD---IAQERMHHDIVRLL 207
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVE 250
T L AA + + L+ AD Q + G TPL A + + V ++LL A +++
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+G TPL+ AA G+ + L+ A +N ++ +SAL A ++D LL
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLL 142
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
GA+++ + ++ T L A+ +G E AK+LLD A
Sbjct: 143 KNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 518 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
LLKNGAN ++ TPL AA+EG E + LLD A A E H
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 200
Query: 575 TDVADLLLSY 584
D+ LL Y
Sbjct: 201 HDIVRLLDEY 210
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADVN + G TPL A GH +V VLL+ GA+V +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 254 ENGHTPLMEAASAGHVGVAKIL 275
+ G T + G+ +A+IL
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + TPL AA+EGHLE+V LL +GA V+A+ + G TA + +NG
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 79
Query: 574 HTDVADLL 581
+ D+A++L
Sbjct: 80 NEDLAEIL 87
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V +++G+TPL AA GH+ + ++LL+ GA +N
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ- 64
Query: 287 NEFKESALTLACYKGHLDMVRFLLSA 312
++F ++A ++ G+ D+ L A
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 28/110 (25%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNST 592
L+EAA+ G + VR L+ +GA V+AK + G T L A GH ++ ++LL GA+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD----- 60
Query: 593 MLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
V+A+ + G TA + +NG+ D+A++L
Sbjct: 61 -----------------------VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D G+ LL A AG + ++L+A A+V + G TPL AA G +EIV +L+ G
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAG 58
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
ADVN Q G T + G+E + +L
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA +N + + L LA +GHL++V LL AGAD +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 320 TDEMHTALMEASMD-GHVEVAKLL 342
D+ + S+D G+ ++A++L
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
L+EAA+ G + V++L+ V+AK + G T L A GH ++ ++LL GA+++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
A G D VR L++ GAD K + +T L A+ +GH+E+ ++LL +GA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADV + +G+TPL A GH VV++LLE GA+V +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 254 ENGHTPLMEAASAGHVGVAKIL 275
+ G T + G+ +A+IL
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 517 FLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
L+ NGA++ + STPL AA+ GHLE+V+ LL++GA V+A+ + G TA + +NG
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG 83
Query: 574 HTDVADLL 581
+ D+A++L
Sbjct: 84 NEDLAEIL 91
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++NG TPL AA GH+ V K+LLE GA +N
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ- 68
Query: 287 NEFKESALTLACYKGHLDMVRFL 309
++F ++A ++ G+ D+ L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 28/110 (25%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNST 592
L+EAA+ G + VR L+ +GA V AK + G T L A NGH +V LLL GA+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----- 64
Query: 593 MLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
V+A+ + G TA + +NG+ D+A++L
Sbjct: 65 -----------------------VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 150 HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
H +D G+ LL A AG + ++L+A A+V + G TPL AA +G +E+V+LL
Sbjct: 1 HMGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNG-STPLHLAARNGHLEVVKLL 58
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ GADVN Q G T + G+E + +L
Sbjct: 59 LEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
L+EAA+ G + V++L+ V AK + G T L A NGH +V LLL GA+++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA + ++ + L LA GHL++V+ LL AGAD +
Sbjct: 10 LLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NA 67
Query: 320 TDEMHTALMEASMD-GHVEVAKLL 342
D+ + S+D G+ ++A++L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
A G D VR L++ GAD K T L A+ +GH+EV KLLL++GA
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 627 LTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGX 681
L A G D +L++ GA++ + ST L AA+ GH VV+LLL+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE--------- 60
Query: 682 XXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADLL 728
+ V+A+ + G TA + +NG+ D+A++L
Sbjct: 61 ----------------AGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
V AK + G T L A NGH +V LLL GA++
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 140 KKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAAS 199
K+LL + + G + L A SA + Q+L+ A D + TPL+ AA
Sbjct: 42 KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 200 SGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
++ LIN ADVN G + L +A A + VLL+ GAN + N TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 260 LMEAASAGHVGVAKILLEYGAG--INTHSNEFKESALTLACYKGHLDMVRFL 309
L AA G AK+LL++ A I H + +A + H D+VR L
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD---IAQERMHHDIVRLL 210
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVE 250
T L AA + + L+ AD N Q + G TPL A + + V ++L+ A +++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+G TPL+ AA G+ + L+ A +N ++ +SAL A ++D LL
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLL 145
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
GA+++ + + T L A+ +G E AK+LLD A
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 389 TVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLL--AMHANVEDRGIKGECTPL 445
+ + +G S+H TD GE+ L LA + A+ LL + AN++D + TPL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPL 62
Query: 446 MEAASSGRQCNLNESVSAYARH-DFFPNDKSVNGLQASVILIPGAK---INAHXXXXXXX 501
A S+ Q + A D +D + + A+ + + G IN+H
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 502 XXXXXCCGGFLDVADF-----LLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 553
V + LLKNGAN ++ + TPL AA+EG E + LLD A
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 554 QVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
A E H D+ LL Y
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
Query: 142 LLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 201
LL G + + G + L A +A + Q+LL A + + TPL+ AA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 202 FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLM 261
+V LI AD+N +SG T L +A A + V +LL AN + ++ TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 262 EAASAGHVGVAKILLEYGAG--INTHSNEFKESALTLACYKGHLDMVRFL 309
AA G +K LL+ A I H + +A + H D+VR L
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRD---VASERLHHDIVRLL 236
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 548 LLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA-NL-----DNSTMLIEAAKGG 601
LLD+GA +++ TG T L A V +LL A NL D +T LI AA+
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 602 HANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLI 656
+V+ L+ ++A +G TAL +A +T+ ++LL + AN D + T L
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 657 EAAKGGHANVVQLLLD 672
AA+ G + LLD
Sbjct: 190 LAAREGSYEASKALLD 205
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 139 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 198
V+ L+T ++ + G++ L A + E +LL HAN + + K E TPL AA
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE-TPLFLAA 192
Query: 199 SSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
G E + L+++ A+ P A H +VR+L E
Sbjct: 193 REGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 36/230 (15%)
Query: 223 GNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
G TPLM A G L+ G ++E++ ++ V LL GA +
Sbjct: 2 GLTPLMIAAVRGGG------LDTGEDIENNEDST------------AQVISDLLAQGAEL 43
Query: 283 NTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
N ++ E++L LA D + LL AGAD + + T L A + V ++L
Sbjct: 44 NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL 103
Query: 343 LDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHE 402
L + A +++A P L+ A V+ L+T ++
Sbjct: 104 LRNRATNLNARMHDGTTP-----------------LILAARLAIEGMVEDLITADADINA 146
Query: 403 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
+ G++ L A + E +LL HAN + + K E TPL AA G
Sbjct: 147 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE-TPLFLAAREG 195
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
+TPL+ AA+ +V L+ + A ++A +G TAL +A +T+ ++LL + AN D
Sbjct: 119 TTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 590 -----NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
+ T L AA+ G + LLD + A E H D+ LL
Sbjct: 179 AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 14 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 73
V+ L+T ++ + G++ L A + E +LL HAN + + K E TPL AA
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE-TPLFLAA 192
Query: 74 SSG 76
G
Sbjct: 193 REG 195
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 193 PLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
PL EAA G + +R +++ VNG +G+T L +AC GGH+ +V L N+E +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF-TQPNIELN 134
Query: 253 NEN--GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFK---ESALTLAC-----YKGH 302
+N G T L AA G+ + ++LL GA + + E K + A AC K
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQG 194
Query: 303 LDMVRFLLSA 312
D VR L +A
Sbjct: 195 TDAVRTLSNA 204
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 532 PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNS 591
PL EAA+ G+L +R LD+ V+ + G TAL +AC GH D+ + L +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT-------- 127
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
N+ ++ + + GDTAL A G+ D+ LLL+ GA D
Sbjct: 128 ----------QPNI---------ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 559 TQTGDTALTYACENGHTDV--ADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSV 616
T DT G T + ++ + ++DN L EAAK G+ + ++ LD V
Sbjct: 42 TDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNP--LHEAAKRGNLSWLRECLDNRVGV 99
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYG------ANLDNSTMLIEAAKGGHANVVQLL 670
+ + G TAL +AC GH D+ + L + N T L AA G+A++VQLL
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159
Query: 671 L 671
L
Sbjct: 160 L 160
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRF 308
V + E+ PL EAA G++ + L+ G+N ++ +AL AC+ GH D+V
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEX 124
Query: 309 LLSAGADQEHKTDEM-HTALMEASMDGHVEVAKLLLDSGAQS 349
L + + ++ +++ TAL A+ G+ ++ +LLL GA++
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 525 IELGASTPLMEAAQEGHLELVRYLL-DSGAQVHAKTQTGDTALTYACENGHTDVADLLLS 583
++ ST L A GH ++V L +++ + + GDTAL A G+ D+ LLL+
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Query: 584 YGANLD 589
GA D
Sbjct: 162 KGARTD 167
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 699 KSGVHAKTQTGDTALTYACENGHTDVADLLLS 730
+ GV+ + G TAL +AC GH D+ + L +
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFT 127
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 375 SRSLVQACSDGDVKTVKKLLTEGR-SVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 433
S +L AC G V+ L T+ +++ G++ L A GY ++ Q+LLA A
Sbjct: 107 STALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166
Query: 434 EDRGIK 439
+ R I+
Sbjct: 167 DLRNIE 172
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 1 SLVQACSDGDVKTVKKLLTEGR-SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 59
+L AC G V+ L T+ +++ G++ L A GY ++ Q+LLA A +
Sbjct: 109 ALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Query: 60 RGIK 63
R I+
Sbjct: 169 RNIE 172
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGR-SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
+L AC G V+ L T+ +++ G++ L A GY ++ Q+LLA A +
Sbjct: 109 ALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
Query: 185 RGIK 188
R I+
Sbjct: 169 RNIE 172
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L+EAA +G + VR+L+ +GADV + +G+TPL A GH VV++LLE GA+V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 254 ENGHTPLMEAASAGHVGVAKIL 275
+ G T + G+ +A+IL
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 513 DVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYA 569
D L+ NGA++ + STPL AA+ GHLE+V+ LL++GA V A+ + G TA +
Sbjct: 38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 570 CENGHTDVADLL 581
+NG+ D+A++L
Sbjct: 98 IDNGNEDLAEIL 109
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L+ A G + VR+L+ GA+V ++NG TPL AA GH+ V K+LLE GA +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ- 86
Query: 287 NEFKESALTLACYKGHLDMVRFL 309
++F ++A ++ G+ D+ L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 28/110 (25%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNST 592
L+EAA+ G + VR L+ +GA V AK + G T L A NGH +V LLL GA+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----- 82
Query: 593 MLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
V A+ + G TA + +NG+ D+A++L
Sbjct: 83 -----------------------VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 147 RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIV 206
R H +D G+ LL A AG + ++L+A A+V + G TPL AA +G +E+V
Sbjct: 16 RGSHMGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNG-STPLHLAARNGHLEVV 73
Query: 207 RLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+LL+ GADV Q G T + G+E + +L
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 649
L+EAA+ G + V++L+ V AK + G T L A NGH +V LLL GA++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
A G D VR L++ GAD K T L A+ +GH+EV KLLL++GA
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L+EAA AG +IL+ GA + ++ + L LA GHL++V+ LL AGAD +
Sbjct: 28 LLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 320 TDEMHTALMEASMD-GHVEVAKLL 342
D+ + S+D G+ ++A++L
Sbjct: 87 -DKFGKTAFDISIDNGNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 31/121 (25%)
Query: 613 PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVV 667
PR H + G L A G D +L++ GA++ + ST L AA+ GH VV
Sbjct: 15 PRGSHMGSDLG-KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 73
Query: 668 QLLLDFPRSVIGGXXXXXXXXXXXXXXXQGKKSGVHAKTQTGDTALTYACENGHTDVADL 727
+LLL+ + V A+ + G TA + +NG+ D+A++
Sbjct: 74 KLLLE-------------------------AGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 728 L 728
L
Sbjct: 109 L 109
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
V AK + G T L A NGH +V LLL GA++
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
+ A SSG E V L+ GAD+N + G T L AC + +V+ L+E GAN+ +
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGA---GINTH-----------------SNEFKESA 293
G PL AAS G++ +A+ L+ GA +N+ NE
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 294 LTLACYKGHLDMV-----RFLLSAGADQEHKTDEMH-----TALMEASMDGHVEVAKLLL 343
+ + + + + R L++G H D H TAL A+ G+ EV KLL+
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSG----HINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
+L QAC D +V VK L+ G ++++ +EG L A S GY ++A+ L++ A+V
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 186 GIKGECTPL----------------------MEAASSGFIEIV----RLLINHG--ADVN 217
+G+ TPL +EAA I+ R +N G DV
Sbjct: 136 NSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194
Query: 218 GQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
+ SG T L A A G+ V+++L++ +V + +G TPL AA G +IL+E
Sbjct: 195 -HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 33/259 (12%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ ACS GD + V +LL G ++ +G + L AC ++ + L+ AN+
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
+G PL AAS G+ +A E L + V E L
Sbjct: 104 NEG-WIPLHAAASCGYLDIA---------EYLISQGAHVGAVNSEGDTPLD--------- 144
Query: 122 QNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ + ++ +G + E E ++ + Q L + H N
Sbjct: 145 ------IAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDARQWLNSGHIN 191
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
+ R K T L AA+ G+ E+++LLI DVN + G TPL A G E R+
Sbjct: 192 -DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
Query: 242 LLECGANVEDHNENGHTPL 260
L+E ++E N+ G T
Sbjct: 251 LVENLCDMEAVNKVGQTAF 269
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 32/220 (14%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
D+G L+ ACS+G E LL A++ + G T L +A +++V+ L+ +G
Sbjct: 39 DDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDG-LTALHQACIDDNVDMVKFLVENG 96
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPL------------- 260
A++N + G PL A + G+ + L+ GA+V N G TPL
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 261 ---------MEAASAGHVGVAKILLEYGAGINT-HSNEFKE-----SALTLACYKGHLDM 305
+EAA + +L + +N+ H N+ + +AL +A KG+ ++
Sbjct: 157 NEVNRQGVDIEAARKEEERI--MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS 345
++ L+ A D K + T L A+ G E ++L+++
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 507 CCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
C +D+ FL++NGANI + PL AA G+L++ YL+ GA V A GD
Sbjct: 81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Query: 564 TALTY-------ACENGHTDVADLLLSYGANLDNSTMLIEAAKG---GHANVVQLLLDFP 613
T L + + + + ML +A + GH N V+
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR------ 194
Query: 614 RSVHAKTQTGDTALTYACENGHTDVADLLLS--YGANL---DNSTMLIEAAKGGHANVVQ 668
HAK +G TAL A G+T+V LL+ Y N+ D T L AA G +
Sbjct: 195 ---HAK--SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 669 LLLD 672
+L++
Sbjct: 250 ILVE 253
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 33/227 (14%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+L QAC D +V VK L+ G ++++ +EG L A S GY ++A+ L++ A+V
Sbjct: 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
+G+ TPL D + + ++ + R E R
Sbjct: 136 NSEGD-TPL-------------------DIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
R Q + G + V+ + G ++H +A + GY E+ ++L+
Sbjct: 176 IM-LRDARQWLNSGHINDVRHAKSGGTALH-----------VAAAKGYTEVLKLLIQARY 223
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
+V + G TPL AA G E R+L+ + D+ + G T
Sbjct: 224 DVNIKDYDG-WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
+ A S+G LLE GA IN ++N +AL AC ++DMV+FL+ GA+
Sbjct: 44 FLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
+E L A+ G++++A+ L+ GA V A P D E + +
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 380 QACSDGDVKTVKK-----LLTEGRSVHET--------TDEGESLLSLACSAGYYELAQVL 426
Q D++ +K +L + R + G + L +A + GY E+ ++L
Sbjct: 162 QGV---DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 427 LAMHANVEDRGIKGECTPLMEAASSGRQ 454
+ +V + G TPL AA G++
Sbjct: 219 IQARYDVNIKDYDG-WTPLHAAAHWGKE 245
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---D 589
+ A G E V LL+ GA ++ G TAL AC + + D+ L+ GAN+ D
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 590 NSTM--LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTAL 627
N L AA G+ ++ + L+ V A GDT L
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 102/268 (38%), Gaps = 48/268 (17%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
+ ACS GD + V +LL G ++ +G + L AC ++ + L+ AN+
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHXXX 497
+G PL AAS G ++ Y ++ GA + A
Sbjct: 104 NEG-WIPLHAAASCGYL-----DIAEY-------------------LISQGAHVGAVNSE 138
Query: 498 XXXXXXXXXCCGGFLDVADFLLKNGANIELGASTP----LMEAAQ---EGHLELVRYLLD 550
+ + + + G +IE L +A Q GH+ VR
Sbjct: 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR---- 194
Query: 551 SGAQVHAKTQTGDTALTYACENGHTDVADLLLS--YGANL---DNSTMLIEAAKGGHANV 605
HAK +G TAL A G+T+V LL+ Y N+ D T L AA G
Sbjct: 195 -----HAK--SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 606 VQLLLDFPRSVHAKTQTGDTALTYACEN 633
++L++ + A + G TA A E+
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVADED 275
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 569 ACENGHTDVADLLLSYGA-----NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTG 623
AC +G T+ LL GA N+D T L +A + ++V+ L++ +++ G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 624 DTALTYACENGHTDVADLLLSYGANL 649
L A G+ D+A+ L+S GA++
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHV 132
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 111 LTRMRNEN----PRPQNERSLVQACSDGDVKTVKKLLTE--GRSVHETTDEGESLLSLAC 164
L++M N N P ACS G+++ VK L +++ T++G + L LA
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 165 SAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG-ADVNGQSSSG 223
++E++Q L+ A+V + K PL AAS G ++++ LL G + VN Q G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 224 NTPLMYACAGGHEAVVRVLLE 244
TPL +A A GH +L+E
Sbjct: 175 WTPLFHALAEGHGDAAVLLVE 195
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 5/189 (2%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 183
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINH--GADVNGQSSSGNTPLMYACAGGHEAVVRV 241
D TP A S G +E+V+ L + D+N ++ G T L A V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
L+E GA+V ++ PL AAS G + + ++L G ++ + L A +G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 302 HLDMVRFLL 310
H D L+
Sbjct: 186 HGDAAVLLV 194
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 434
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 435 DRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAH 494
D TP A S G NL S Y R +K N + L G K
Sbjct: 66 DYPDDSGWTPFHIACSVG---NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---- 118
Query: 495 XXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDS 551
+ +V+ FL++NGA++ + PL AA G L+L+ L
Sbjct: 119 ----------------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 552 G-AQVHAKTQTGDTALTYACENGHTDVADLLLS-YGANLD 589
G + V+ + + G T L +A GH D A LL+ YGA D
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 111 LTRMRNEN----PRPQNERSLVQACSDGDVKTVKKLLTE--GRSVHETTDEGESLLSLAC 164
L++M N N P ACS G+++ VK L +++ T++G + L LA
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 165 SAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG-ADVNGQSSSG 223
++E++Q L+ A+V + K PL AAS G ++++ LL G + VN Q G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKD-KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 224 NTPLMYACAGGHEAVVRVLLE 244
TPL +A A GH +L+E
Sbjct: 175 WTPLFHALAEGHGDAAVLLVE 195
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 5/189 (2%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 183
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINH--GADVNGQSSSGNTPLMYACAGGHEAVVRV 241
D TP A S G +E+V+ L + D+N ++ G T L A V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
L+E GA+V ++ PL AAS G + + ++L G ++ + L A +G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 302 HLDMVRFLL 310
H D L+
Sbjct: 186 HGDAAVLLV 194
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 434
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 435 DRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAH 494
D TP A S G NL S Y R +K N + L G K
Sbjct: 66 DYPDDSGWTPFHIACSVG---NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---- 118
Query: 495 XXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDS 551
+ +V+ FL++NGA++ + PL AA G L+L+ L
Sbjct: 119 ----------------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 552 G-AQVHAKTQTGDTALTYACENGHTDVADLLLS-YGANLD 589
G + V+ + + G T L +A GH D A LL+ YGA D
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHE--TTDEGESLLSLACSAGYYELAQVLLAMHA--NVEDR 185
A + GDV+ V++LL VH G++ L + G +A LL A NV+D
Sbjct: 15 AAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQD- 71
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
+P+ +AA +GF++ +++L+ HGADVN S+G+ P+ A GH +VV L
Sbjct: 72 --ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAP 128
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+++ + +G TPL A G + IL
Sbjct: 129 ESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 197 AASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
AA+ G ++ VR L++ H +N + +M+ G AV LL+ GA+
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSPAVALELLKQGASPNVQ 70
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+ +G +P+ +AA G + K+L+E+GA +N + + LA +GH +V F L+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA-LDSTGSLPIHLAIREGHSSVVSF-LAP 128
Query: 313 GADQEHK 319
+D H+
Sbjct: 129 ESDLHHR 135
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 514 VADFLLKNGA--NIELGAST-PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYAC 570
VA LLK GA N++ + T P+ +AA+ G L+ ++ L++ GA V+A TG + A
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 571 ENGHTDVADLL 581
GH+ V L
Sbjct: 116 REGHSSVVSFL 126
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 510 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
GFLD L+++GA++ ST P+ A +EGH +V +L + +H + +G T L
Sbjct: 85 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 143
Query: 567 TYACENGHTDVADLL 581
A + G ++ D+L
Sbjct: 144 ELARQRGAQNLMDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA------GYYELAQVLLAMHA--N 181
A + GDV+ V++LL H ++L +A G +A LL A N
Sbjct: 9 AAARGDVQEVRRLL------HRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V+D +P+ +AA +GF++ +++L+ HGADVN +G P+ A GH AVV
Sbjct: 63 VQD---TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 118
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
L +++ + G TPL A G + IL
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 510 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
GFLD L+++GA++ + T P+ A QEGH +V +L + + +H + G T L
Sbjct: 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL 137
Query: 567 TYACENGHTDVADLL 581
A + G D+ D+L
Sbjct: 138 ELALQRGAQDLVDIL 152
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 197 AASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
AA+ G ++ VR L++ H +N + +M+ G A+ LL+ GA+
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSTAIALELLKQGASPNVQ 64
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ +G +P+ +AA G + K+L+E+GA +N + + LA +GH +V FL
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFL 120
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHE--TTDEGESLLSLACSAGYYELAQVLLAMHA--NVEDR 185
A + GDV+ V++LL VH G++ L + G +A LL A NV+D
Sbjct: 17 AAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQD- 73
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
+P+ +AA +GF++ +++L+ HGADVN S+G+ P+ A GH +VV L
Sbjct: 74 --ASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVS-FLAP 130
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+++ + +G TPL A G + IL
Sbjct: 131 ESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 197 AASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
AA+ G ++ VR L++ H +N + +M+ G AV LL+ GA+
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSPAVALELLKQGASPNVQ 72
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+ +G +P+ +AA G + K+L+E+GA +N + + LA +GH +V F L+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNA-LDSTGSLPIHLAIREGHSSVVSF-LAP 130
Query: 313 GADQEHK 319
+D H+
Sbjct: 131 ESDLHHR 137
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 514 VADFLLKNGA--NIELGAST-PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYAC 570
VA LLK GA N++ + T P+ +AA+ G L+ ++ L++ GA V+A TG + A
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 571 ENGHTDVADLL 581
GH+ V L
Sbjct: 118 REGHSSVVSFL 128
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 510 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
GFLD L+++GA++ ST P+ A +EGH +V +L + +H + +G T L
Sbjct: 87 GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 145
Query: 567 TYACENGHTDVADLL 581
A + G ++ D+L
Sbjct: 146 ELARQRGAQNLMDIL 160
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA------GYYELAQVLLAMHA--N 181
A + GDV+ V++LL H ++L +A G +A LL A N
Sbjct: 15 AAARGDVQEVRRLL------HRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 68
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V+D +P+ +AA +GF++ +++L+ HGADVN +G P+ A GH AVV
Sbjct: 69 VQD---TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS- 124
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
L +++ + G TPL A G + IL
Sbjct: 125 FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 510 GFLDVADFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
GFLD L+++GA++ + T P+ A QEGH +V +L + + +H + G T L
Sbjct: 85 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPL 143
Query: 567 TYACENGHTDVADLL 581
A + G D+ D+L
Sbjct: 144 ELALQRGAQDLVDIL 158
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 197 AASSGFIEIVRLLIN----HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
AA+ G ++ VR L++ H +N + +M+ G A+ LL+ GA+
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF----GSTAIALELLKQGASPNVQ 70
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ +G +P+ +AA G + K+L+E+GA +N + + LA +GH +V FL
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFL 126
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L++++ G ++V+ +I D + + G T L A GH +V+ L++ G NV +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGI 282
+G TPL AAS +V V K L+E GA +
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
D GI T L A +G EIV+ L+ G +VN S G TPL A + + V + L+
Sbjct: 68 DEGI----TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 244 ECGANV 249
E GA V
Sbjct: 124 ESGAAV 129
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 508 CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
C G ++ FL++ G N+ S TPL AA ++++ ++L++SGA V A T +
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 565 ALTYAC---ENGHTDVADLLLSYG 585
C E G+T + L YG
Sbjct: 139 TAADKCEEMEEGYTQCSQFL--YG 160
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 118 NPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 177
NP P L+ + +G+ V++++ E DEG + L A AG+ E+ + L+
Sbjct: 34 NPLPL--ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 178 MHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSS 222
NV G TPL AAS +++ + L+ GA V + S
Sbjct: 92 FGVNVNAADSDG-WTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL---- 588
L++++ EG +LV+ ++ G TAL A GHT++ L+ +G N+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 589 -DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYAC---ENGHTDVADLLLS 644
D T L AA + V + L++ +V A T + C E G+T + L
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-- 158
Query: 645 YG 646
YG
Sbjct: 159 YG 160
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
N+ G T L A AGH + K L+++G +N ++ + L A ++ + +FL+ +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFLVES 125
Query: 313 GADQEHKT-DEMHTAL--MEASMDGHVEVAKLLLDSGAQSVSA-------YARHDFFPND 362
GA T +M TA E +G+ + ++ L G Q YA D+ P +
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY--GVQEKMGIMNKGVIYALWDYEPQN 183
Query: 363 KCERP 367
E P
Sbjct: 184 DDELP 188
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
T L A GH E+V++L+ G V+A G T L A + V L+ GA
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
G+ N + L + +G D+V+ ++ D DE TAL A GH E+ K
Sbjct: 28 GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 341 LLLDSGAQSVSA 352
L+ G +A
Sbjct: 88 FLVQFGVNVNAA 99
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L+ + +G+ V++++ E DEG + L A AG+ E+ + L+ NV
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 438 IKGECTPLMEAASSGRQCN 456
G TPL AAS CN
Sbjct: 101 SDG-WTPLHCAAS----CN 114
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL+ AA ++ LIN ADVN G + L +A A + VLL+ GAN +
Sbjct: 16 TTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 75
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAG--INTHSNEFKESALTLACYKGHLDMVRF 308
N TPL AA G AK+LL++ A I H + +A + H D+VR
Sbjct: 76 MQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD---IAQERMHHDIVRL 132
Query: 309 L 309
L
Sbjct: 133 L 133
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 518 LLKNGANIEL---GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
LLKNGAN ++ TPL AA+EG E + LLD A A E H
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 575 TDVADLL 581
D+ LL
Sbjct: 127 HDIVRLL 133
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+G TPL+ AA G+ + L+ A +N ++ +SAL A ++D LL GA
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+++ + ++ T L A+ +G E AK+LLD A
Sbjct: 73 NKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 105
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 139 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 198
++ L+ V+ D G+S L A + + A VLL AN +D E TPL AA
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNKEETPLFLAA 89
Query: 199 SSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
G E ++L++H A+ + P A H +VR+L E
Sbjct: 90 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L++++ G ++V+ +I D + + G T L A GH +V+ L++ G NV +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGI 282
+G TPL AAS +V V K L+E GA +
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 167 GYYELAQVLLAMHANVEDRGIKGE--CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGN 224
G ++L Q ++ V+D + + T L A +G EIV+ L+ G +VN S G
Sbjct: 48 GEFDLVQRIIY---EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGW 104
Query: 225 TPLMYACAGGHEAVVRVLLECGANV 249
TPL A + + V + L+E GA V
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAV 129
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 519 LKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVA 578
+ +G ++ L++++ EG +LV+ ++ G TAL A GHT++
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86
Query: 579 DLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYAC-- 631
L+ +G N+ D T L AA + V + L++ +V A T + C
Sbjct: 87 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Query: 632 -ENGHTDVADLLLSYGA 647
E G+T + L YG
Sbjct: 147 MEEGYTQCSQFL--YGV 161
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 508 CGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
C G ++ FL++ G N+ S TPL AA ++++ ++L++SGA V A T +
Sbjct: 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ 138
Query: 565 ALTYAC---ENGHTDVADLLLSYGA 586
C E G+T + L YG
Sbjct: 139 TAADKCEEMEEGYTQCSQFL--YGV 161
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L+ + +G+ V++++ E DEG + L A AG+ E+ + L+ NV
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSS 222
G TPL AAS +++ + L+ GA V + S
Sbjct: 101 SDG-WTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 233 GGHEAVVRVLLECGANVEDH---NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEF 289
G + V R++ E V+D N+ G T L A AGH + K L+++G +N ++
Sbjct: 48 GEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD- 102
Query: 290 KESALTLACYKGHLDMVRFLLSAGADQEHKT-DEMHTAL--MEASMDGHVEVAKLLLDSG 346
+ L A ++ + +FL+ +GA T +M TA E +G+ + ++ L G
Sbjct: 103 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY--G 160
Query: 347 AQSVSA-------YARHDFFPNDKCERP 367
Q YA D+ P + E P
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 288 EFKESALTL-ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+F AL L + +G D+V+ ++ D DE TAL A GH E+ K L+ G
Sbjct: 34 KFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 347 A 347
Sbjct: 94 V 94
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 593 MLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL--- 649
+L++++ G ++VQ ++ G TAL A GHT++ L+ +G N+
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 650 --DNSTMLIEAAKGGHANVVQLLLD 672
D T L AA + V + L++
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
M A +G ++ V+ + G DVN G PL YA G ++ LL GA++ +
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGA 280
++ TPL+ A GHV K+LL GA
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
M+A G V+ + G +V E G PL AA G + + + LL GA IN
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-P 64
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
++ + L A Y+GH+ V+ LLS GAD+ K + TAL
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
+R ++G PL AA G +EI+ L+ GAD+N TPL+ A GH + V++LL
Sbjct: 29 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 88
Query: 244 ECGANVEDHNENGHTPL 260
GA+ +G T L
Sbjct: 89 SKGADKTVKGPDGLTAL 105
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 528 GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
G PL AA G LE++ +LL GA ++A + T L A GH LLLS GA+
Sbjct: 34 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ +FLL GA+I TPL+ A EGH+ V+ LL GA K G TAL
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
M A + G L+ V+ + G V+ + G L YA + G ++ + LL GA+++
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTAL 627
+ T L+ A GH + V+LLL K G TAL
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 301 GHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
G L+++ FLL GAD T L+ A +GHV KLLL GA
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
+ A K G + V+ + V+ + G L YA + G ++ + LL GA+++
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 651 --NSTMLIEAAKGGHANVVQLLL 671
+ T L+ A GH + V+LLL
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLL 88
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
M A +G ++ V+ + G DVN G PL YA G ++ LL GA++ +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGA 280
++ TPL+ A GHV K+LL GA
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
M+A G V+ + G +V E G PL AA G + + + LL GA IN
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-P 69
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
++ + L A Y+GH+ V+ LLS GAD+ K + TA
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
+R ++G PL AA G +EI+ L+ GAD+N TPL+ A GH + V++LL
Sbjct: 34 NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Query: 244 ECGANVEDHNENGHT 258
GA+ +G T
Sbjct: 94 SKGADKTVKGPDGLT 108
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 528 GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
G PL AA G LE++ +LL GA ++A + T L A GH LLLS GA+
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 510 GFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTAL 566
G L++ +FLL GA+I TPL+ A EGH+ V+ LL GA K G TA
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
M A + G L+ V+ + G V+ + G L YA + G ++ + LL GA+++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 590 --NSTMLIEAAKGGHANVVQLLL 610
+ T L+ A GH + V+LLL
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLL 93
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 301 GHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
G L+++ FLL GAD T L+ A +GHV KLLL GA
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 594 LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 650
+ A K G + V+ + V+ + G L YA + G ++ + LL GA+++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 651 --NSTMLIEAAKGGHANVVQLLL 671
+ T L+ A GH + V+LLL
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLL 93
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 124 ERSLVQACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
E L+ A + DV+ + KLL EG VH+ GE+ L +A E A VL+ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 183 EDRGIKGEC----TPLMEAASSGFIEIVRLLINHGADVNGQSSS-------------GNT 225
+ E T L A + + +VR L+ GA V+ +++ G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 226 PLMYACAGGHEAVVRVLLECGANVEDHNENG----HTPLMEAASAGHVGVAKILLEYGAG 281
PL +A G E +VR+L+E GA++ + G H +++ + +LL Y G
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 282 INTHSNEFKE-----SALTLACYKGHLDMVRFLLS 311
+ S E + LA +G++ M + L+
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 86/228 (37%), Gaps = 78/228 (34%)
Query: 2 LVQACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
L+ A + DV+ + KLL EG VH+ GE+ L +A A++ N+E
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-------------ALYDNLEAA 53
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPE-VLRRLTSSVSCALDEAAAALTRMRNENP 119
+ LMEAA PE V +TS +
Sbjct: 54 MV------LMEAA----------------PELVFEPMTSELY------------------ 73
Query: 120 RPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
+ + +L A + +V V+ LL G SV A + G H
Sbjct: 74 --EGQTALHIAVINQNVNLVRALLARGASVS------------ARATGS--------VFH 111
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL 227
+ GE PL AA G EIVRLLI HGAD+ Q S GNT L
Sbjct: 112 YRPHNLIYYGE-HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 53/222 (23%)
Query: 373 TYSRSLVQACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
+ L+ A + DV+ + KLL EG VH+ GE+ L +A A++
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA-------------ALYD 48
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
N+E + E P E L E +A H N ++VN ++A +L GA +
Sbjct: 49 NLEAAMVLMEAAP--ELVFEPMTSELYEGQTAL--HIAVIN-QNVNLVRA--LLARGASV 101
Query: 492 NAHXXXXXXXXXXXXCCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDS 551
+A N+ PL AA G E+VR L++
Sbjct: 102 SARA------------------TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143
Query: 552 GAQVHAKTQTGDTAL---------TYACENGHTDVADLLLSY 584
GA + A+ G+T L T+AC+ + +LLLSY
Sbjct: 144 GADIRAQDSLGNTVLHILILQPNKTFACQ-----MYNLLLSY 180
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 531 TPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
+PL+ AA+E ++ + LL G +VH + G+TAL A + + A +L+ L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 590 NSTMLIEAAKGGHA----------NVVQLLLDFPRSVHAK-------------TQTGDTA 626
M E +G A N+V+ LL SV A+ G+
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 627 LTYACENGHTDVADLLLSYGANL 649
L++A G ++ LL+ +GA++
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADI 147
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ G EI R L+ GA+ + + +GN + A G ++ LLE A+V +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
G+ PL AA GH+ V + L+++ A H N ++A LA G ++V + + GA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L AA G LE + LL + V+A+ G TAL + G+ ++A LL GAN D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
+ ++ +AA+ G + +Q LL+F V+ + G+ L A + GH V + L+ + A
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 510 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTA 565
GFLD LL+ A++ + + PL AA+EGHL +V +L+ + + V + GDTA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 566 LTYACENGHTDVADLLLSYGA 586
A G +V L+ + GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 48/173 (27%)
Query: 76 GFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGD 135
GFG+ A KL +PE+ RRL +R NP D
Sbjct: 36 GFGRTALQVMKLGNPEIARRLL----------------LRGANP---------------D 64
Query: 136 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
+K G +++ A AG+ + Q LL A+V +G PL
Sbjct: 65 LK---------------DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLH 108
Query: 196 EAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
AA G + +V L+ H A +V ++ G+T A G VV ++ GA
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 5/189 (2%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 183
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINH--GADVNGQSSSGNTPLMYACAGGHEAVVRV 241
D TP A S G +E+V+ L + D+N ++ G T L A V +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
L+E GA+V ++ PL AAS G + + ++L G ++ + L A +G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Query: 302 HLDMVRFLL 310
H D L+
Sbjct: 186 HGDAAVLLV 194
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANV--E 434
L QAC + + V++LL S+ D+ G L + S +E+ LL+ NV +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 435 DRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAH 494
D TP A S G NL S Y R +K N + L G K
Sbjct: 66 DYPDDSGWTPFHIACSVG---NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---- 118
Query: 495 XXXXXXXXXXXXCCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDS 551
+ +V+ FL++NGA++ + PL AA G L+L+ L
Sbjct: 119 ----------------WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 552 G-AQVHAKTQTGDTALTYACENGHTDVADLLLS-YGANLD 589
G + V+ + + G T L +A GH D A LL+ YGA D
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN 253
L++AA +G +E+V+ + D + + G T L A G + ++V L+ GANV +
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGI 282
+G TPL AAS + L+++GA I
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L+ A G+++ V++ + E + +EG + L A Y + L+ ANV
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADV 216
G TPL AAS I L+ HGA +
Sbjct: 85 SHG-WTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ G EI R L+ GA+ + + +G + A G ++ LLE A+V +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN 101
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
G+ PL AA GH+ V + L+++ A H N ++A LA G ++V + + GA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L AA G LE + LL + V+A+ G TAL + G+ ++A LL GAN D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
++ +AA+ G + +Q LL+F V+ + G+ L A + GH V + L+ + A
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 510 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTA 565
G LD LL+ A++ + + PL AA+EGHL +V +L+ + + V + GDTA
Sbjct: 81 GQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 566 LTYACENGHTDVADLLLSYGA 586
A G +V L+ + GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 76 GFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLV---QACS 132
GFG+ A KL +PE+ RRL +R NP ++ A
Sbjct: 36 GFGRTALQVMKLGNPEIARRLL----------------LRGANPDLKDRTGFAVIHDAAR 79
Query: 133 DGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIKGEC 191
G + T++ LL V+ +EG L LA G+ + + L+ A NV R KG+
Sbjct: 80 AGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD- 138
Query: 192 TPLMEAASSGFIEIVRLLINHGA 214
T A G E+V L+ +GA
Sbjct: 139 TACDLARLYGRNEVVSLMQANGA 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ G EI R L+ GA+ + + +G + A G ++ LLE A+V +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
G+ PL AA GH+ V + L+++ A H N ++A LA G ++V + + GA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L AA G LE + LL + V+A+ G TAL + G+ ++A LL GAN D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
++ +AA+ G + +Q LL+F V+ + G+ L A + GH V + L+ + A
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 510 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTA 565
GFLD LL+ A++ + + PL AA+EGHL +V +L+ + + V + GDTA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 566 LTYACENGHTDVADLLLSYGA 586
A G +V L+ + GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 48/173 (27%)
Query: 76 GFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGD 135
GFG+ A KL +PE+ RRL +R NP D
Sbjct: 36 GFGRTALQVMKLGNPEIARRLL----------------LRGANP---------------D 64
Query: 136 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
+K G +++ A AG+ + Q LL A+V +G PL
Sbjct: 65 LK---------------DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLH 108
Query: 196 EAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
AA G + +V L+ H A +V ++ G+T A G VV ++ GA
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
TP+ AAQEG +E+V YL+ GA V A T TA A N H ++ D+
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 58/252 (23%)
Query: 152 TTDEGESLLSLAC-SAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLI 210
T E ES + L +AG Y + + + N+ D + T L AS+ E LI
Sbjct: 88 TEPEPESPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLI 145
Query: 211 NH--------GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLME 262
H GADVN NTPL A +V L + GA+ +N++ + L +
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 263 AAS---------------------------------------AGHVGVAKILLEYGAGIN 283
AA+ V AK+L+E GA ++
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 284 ------THSNEFK-ESALTLACYKGHLDMVRFLL-SAGADQEHKTDEMHTALMEASMDGH 335
S ++K +AL A + +V++L+ G++++ + ++ T + A+ +G
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 336 VEVAKLLLDSGA 347
+EV L+ GA
Sbjct: 326 IEVVXYLIQQGA 337
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 207 RLLINHGADVN--------GQSSSGNTPLMYACAGGHEAVVRVLL-ECGANVEDHNENGH 257
+LL+ GA V+ + G T L YA + +V+ L+ E G+N + +E+G
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 258 TPLMEAASAGHVGVAKILLEYGAGI 282
TP+ AA G + V L++ GA +
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASV 339
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA 214
+G + L A + + L+ + +D+ + TP+ AA G IE+V LI GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
V ++ +T A A H +V + C E
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 192 TPLMEAASSGFIEIVRLLI-NHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
T L AA IV+ L+ G++ + Q G TP+ A G VV L++ GA+VE
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
Query: 251 DHNENGHTPLMEAASAGHVGVAKIL 275
+ HT A + H + I
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIF 365
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ G EI R L+ GA+ + + +G + A G ++ LLE A+V +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
G+ PL AA GH+ V + L+++ A H N ++A LA G ++V + + GA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD--- 589
L AA G LE + LL + V+A+ G TAL + G+ ++A LL GAN D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKD 67
Query: 590 --NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
++ +AA+ G + +Q LL+F V+ + G+ L A + GH V + L+ + A
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 510 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTA 565
GFLD LL+ A++ + + PL AA+EGHL +V +L+ + + V + GDTA
Sbjct: 81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 566 LTYACENGHTDVADLLLSYGA 586
A G +V L+ + GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 48/173 (27%)
Query: 76 GFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGD 135
GFG+ A KL +PE+ RRL +R NP D
Sbjct: 36 GFGRTALQVMKLGNPEIARRLL----------------LRGANP---------------D 64
Query: 136 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
+K G +++ A AG+ + Q LL A+V +G PL
Sbjct: 65 LK---------------DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL-PLH 108
Query: 196 EAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
AA G + +V L+ H A +V ++ G+T A G VV ++ GA
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL++A ++ + L+ +GA+VN S+G PL +A GH + + L+ GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 252 HNENGHTPL---MEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR- 307
+ G PL ME A+A V + ++ A E+A A + +LD+ R
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREA----------EAAQGQAGDETYLDIFRD 346
Query: 308 FLLSAGADQE---HKTDEMHT 325
F L A D E ++ ++HT
Sbjct: 347 FSLMASDDPEKLSRRSHDLHT 367
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 516 DFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACEN 572
+FLL+NGAN+ S PL A GH L L GA + A+ G LT A E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 573 GHTDVADLL 581
+ D+ LL
Sbjct: 312 ANADIVTLL 320
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 588
+TPL++A L +LL +GA V+ G L +A GHT +A L L GA+L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 589 -------DNSTMLIEAAKGGHANVVQLL 609
D T+ +E A +A++V LL
Sbjct: 296 ARDSEGRDPLTIAMETA---NADIVTLL 320
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 582 LSYGANL-------DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENG 634
L++GA++ DN+T LI+A + LL +V+ G L +A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 635 HTDVADLLLSYGANL--------DNSTMLIEAAKGGHANVVQLL 670
HT +A L L GA+L D T+ +E A +A++V LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETA---NADIVTLL 320
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ G EI R L+ GA+ + + +G + A G ++ LLE A+V +
Sbjct: 42 LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN 101
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
G+ PL AA GH+ V + L+++ A H N ++A LA G ++V + + GA
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 510 GFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLD-SGAQVHAKTQTGDTA 565
GFLD LL+N A++ + + PL AA+EGHL +V +L+ + + V + GDTA
Sbjct: 81 GFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
Query: 566 LTYACENGHTDVADLLLSYGA 586
A G +V L+ + GA
Sbjct: 141 CDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 76 GFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLV---QACS 132
GFG+ A KL +PE+ RRL +R NP ++ A
Sbjct: 36 GFGRTALQVMKLGNPEIARRLL----------------LRGANPDLKDRTGFAVIHDAAR 79
Query: 133 DGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIKGEC 191
G + T++ LL V+ +EG L LA G+ + + L+ A NV R KG+
Sbjct: 80 AGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD- 138
Query: 192 TPLMEAASSGFIEIVRLLINHGA 214
T A G E+V L+ +GA
Sbjct: 139 TACDLARLYGRNEVVSLMQANGA 161
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL++A ++ + L+ +GA+VN S+G PL +A GH + + L+ GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 252 HNENGHTPL---MEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR- 307
+ G PL ME A+A V + ++ A E+A A + +LD+ R
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREA----------EAAQGQAGDETYLDIFRD 346
Query: 308 FLLSAGADQE---HKTDEMHT 325
F L A D E ++ ++HT
Sbjct: 347 FSLMASDDPEKLSRRSHDLHT 367
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 516 DFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACEN 572
+FLL+NGAN+ S PL A GH L L GA + A+ G LT A E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 573 GHTDVADLL 581
+ D+ LL
Sbjct: 312 ANADIVTLL 320
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 588
+TPL++A L +LL +GA V+ G L +A GHT +A L L GA+L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 589 -------DNSTMLIEAAKGGHANVVQLL 609
D T+ +E A +A++V LL
Sbjct: 296 ARDSEGRDPLTIAMETA---NADIVTLL 320
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 582 LSYGANL-------DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENG 634
L++GA++ DN+T LI+A + LL +V+ G L +A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 635 HTDVADLLLSYGANL--------DNSTMLIEAAKGGHANVVQLL 670
HT +A L L GA+L D T+ +E A +A++V LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETA---NADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TPL++A ++ + L+ +GA+VN S+G PL +A GH + + L+ GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 252 HNENGHTPL---MEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR- 307
+ G PL ME A+A V + ++ A E+A A + +LD+ R
Sbjct: 297 RDSEGRDPLTIAMETANADIVTLLRLAKMREA----------EAAQGQAGDETYLDIFRD 346
Query: 308 FLLSAGADQE---HKTDEMHT 325
F L A D E ++ ++HT
Sbjct: 347 FSLMASDDPEKLSRRSHDLHT 367
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 516 DFLLKNGANIELGAST---PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACEN 572
+FLL+NGAN+ S PL A GH L L GA + A+ G LT A E
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET 311
Query: 573 GHTDVADLL 581
+ D+ LL
Sbjct: 312 ANADIVTLL 320
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 588
+TPL++A L +LL +GA V+ G L +A GHT +A L L GA+L
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 589 -------DNSTMLIEAAKGGHANVVQLL 609
D T+ +E A +A++V LL
Sbjct: 296 ARDSEGRDPLTIAMETA---NADIVTLL 320
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 582 LSYGANL-------DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENG 634
L++GA++ DN+T LI+A + LL +V+ G L +A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 635 HTDVADLLLSYGANL--------DNSTMLIEAAKGGHANVVQLL 670
HT +A L L GA+L D T+ +E A +A++V LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETA---NADIVTLL 320
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVN-GQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL A E+VRLL + GAD+N + + G TPL A +V+ +LL+ GA+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGA 280
G TPL A + +A++L +GA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+E N +GHTPL A + ++L + GA +N + L LA ++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
LL AGAD + T L A + + +A+LL GA
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 134 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA----NVEDRGI-- 187
G+ TV+KL G V G + L LAC + A VLL + D +
Sbjct: 56 GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 188 KGECTPLMEAASSGFI-------------EIVRLLINHGADVNGQSSSGNTPLMYACAGG 234
+CTP A + E RL + ++ G+TPL A
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL------QLEAENYDGHTPLHVAVIHK 169
Query: 235 HEAVVRVLLECGANVEDHNEN-GHTPLMEAASAGHVGVAKILLEYGA 280
+VR+L + GA++ G TPL A A V ++LL+ GA
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQT-GDTALTYACENGHTDVADLLLSYGAN 587
TPL A E+VR L D+GA ++ T G T L A E V +LLL GA+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVN-GQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL A E+VRLL + GAD+N + + G TPL A +V+ +LL+ GA+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT 219
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGA 280
G TPL A + +A++L +GA
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+E N +GHTPL A + ++L + GA +N + L LA ++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
LL AGAD + T L A + + +A+LL GA
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 134 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA----NVEDRGI-- 187
G+ TV+KL G V G + L LAC + A VLL + D +
Sbjct: 56 GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 188 KGECTPLMEAASSGFI-------------EIVRLLINHGADVNGQSSSGNTPLMYACAGG 234
+CTP A + E RL + ++ G+TPL A
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL------QLEAENYDGHTPLHVAVIHK 169
Query: 235 HEAVVRVLLECGANVEDHNEN-GHTPLMEAASAGHVGVAKILLEYGA 280
+VR+L + GA++ G TPL A A V ++LL+ GA
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQT-GDTALTYACENGHTDVADLLLSYGAN 587
TPL A E+VR L D+GA ++ T G T L A E V +LLL GA+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 203 IEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLME 262
+ IV L+ + +++ Q+ G+T L Y C + +++LL A++E NE+G TPL
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 244
Query: 263 AASAGHVGVAKILLEYGAG-INTH 285
A H ++L + +G N+H
Sbjct: 245 AKRLKHEHCEELLTQALSGRFNSH 268
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 532 PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-- 589
PL +AA ++V+ LL SG G+TAL YA ++G+ L + L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 590 ----NSTMLIEAAKGGHANVVQLLL-DFPRSVHAKTQTGDTALTYAC-----ENGHTDVA 639
T A ++V L + P T D A+ +C +NGH D
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFLSEIP-------STFDLAILLSCIHITIKNGHVDXX 177
Query: 640 DLLLSY--GANLDNSTMLIEAAK 660
LLL Y N +NS + I K
Sbjct: 178 ILLLDYXTSTNTNNSLLFIPDIK 200
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 193 PLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH 252
PL +AA+ +IV++L+ G D + GNT L YA G+ V++ ++ + +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFY 124
Query: 253 NENGH-TPLMEAASAGHVGVAKILL 276
+ G T A V + L
Sbjct: 125 GKTGWKTSFYHAVXLNDVSIVSYFL 149
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 50/270 (18%)
Query: 102 CALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 161
C L A A + NE P L QA + D K VK LL G + D+G + L
Sbjct: 48 CTLLNAGALKNLLENEFP-------LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100
Query: 162 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSS 221
A +G + ++ + + + G G T A + IV +
Sbjct: 101 YAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFL----------- 149
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
P + A +LL C + GHV +LL+Y
Sbjct: 150 -SEIPSTFDLA--------ILLSC--------------IHITIKNGHVDXXILLLDYXTS 186
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
NT+++ + LA ++ ++ L + +++A +E + E+AK
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEXLQALFKYDIN-------IYSANLENVLLDDAEIAKX 239
Query: 342 LLDSGAQSVS-AYARH-DFFPNDKCERPSS 369
+++ + S +Y + D N+K + S
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIIS 269
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFK-ESALTLACYKGHLDMVRFLLSAGA 314
GH+ A + +V + LL GA N NEF A TL K +V+ LL +G
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK----IVKILLFSGL 86
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
D D+ +TAL A G+ + KL + +
Sbjct: 87 DDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS 286
L A A G VR LLE GAN N G P+ + G VA++LL +GA N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL-LDS 345
+ A +G LD + L AGA + + + A GH +VA+ L +
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 346 GAQSVSAYARHDFFPNDKCERPSSIS 371
G S +AR D E PS I
Sbjct: 135 GGTRGSNHAR-----IDAAEGPSDIP 155
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 510 GFLDVADFLLKNGANIELG----ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTA 565
G VA+ LL +GA + P+ +AA+EG L+ + L +GA++ + G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 566 LTYACENGHTDVADLL-LSYGANLDNSTMLIEAAKG 600
+ A E GH DVA L + G ++ I+AA+G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G V+ V+ LL G + + G + + G +A++LL +H G
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLL-LH------G 67
Query: 187 IKGECT-------PLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+ C P+ +AA GF++ + +L GA ++ + + G P+ A GH V
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 127
Query: 240 RVL 242
R L
Sbjct: 128 RYL 130
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TP AA + + L+ DV+ +G T L++ G + VR+L E GA++ D
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-D 104
Query: 252 HNE--NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLA 297
H + G T L AA V + L+E GA I +E +AL LA
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELA 151
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 221 SSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
S TP A E + LLE +V+ +ENG T L+ A G ++L E GA
Sbjct: 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
++ +AL +A ++V L+ GAD E + + TAL
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 122 QNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ E A D + + +LL E R V + G + L G + ++L A+
Sbjct: 44 EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYA 230
++ R ++G T L AA E+V L+ GAD+ + G T L A
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TP AA++ + + LL+ V A + G TAL + G LL GA+LD+
Sbjct: 47 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 591 STM------LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACE 632
M L AA VV+ L++ + + + G TAL A E
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 153
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
TP AA + + L+ DV+ +G T L++ G + VR+L E GA++ D
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-D 103
Query: 252 HNE--NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLA 297
H + G T L AA V + L+E GA I +E +AL LA
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 221 SSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
S TP A E + LLE +V+ +ENG T L+ A G ++L E GA
Sbjct: 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
++ +AL +A ++V L+ GAD E + + TAL
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 122 QNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ E A D + + +LL E R V + G + L G + ++L A+
Sbjct: 43 EYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYA 230
++ R ++G T L AA E+V L+ GAD+ + G T L A
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TP AA++ + + LL+ V A + G TAL + G LL GA+LD+
Sbjct: 46 TPWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 591 STM------LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACE 632
M L AA VV+ L++ + + + G TAL A E
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+ G S +G L A A G VR LLE GA+ N G P+ + G VA++L
Sbjct: 8 LGGSSDAG---LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELL 63
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
L +GA N + A +G LD + L AGA + + A GH
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Query: 336 VEVAKLL 342
++A+ L
Sbjct: 124 RDIARYL 130
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G V+TV++LL G + G + + G ++A++LL A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
P+ +AA GF++ + +L GA ++ + G P+ A GH + R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 510 GFLDVADFLLKNGANIELG----ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTA 565
G VA+ LL +GA + P+ +AA+EG L+ + L +GA++ G
Sbjct: 55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 566 LTYACENGHTDVADLL 581
+ A E GH D+A L
Sbjct: 115 VDLAEEQGHRDIARYL 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ A+ + +V +I +G ++ +++ GNT L YA +++LL+ A V NE
Sbjct: 179 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAG 281
G T L A H ++L + AG
Sbjct: 239 AGETALDIARKKHHKECEELLEQAQAG 265
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 534 MEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLS 583
++ A + L LV +++ +G + AK G+TAL YA D LLL
Sbjct: 179 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 510 GFLDVADFLLKNGANIELG----ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTA 565
G VA+ LL +GA + P+ +AA+EG L+ + L +GA++ + G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 566 LTYACENGHTDVADLL-LSYGANLDNSTMLIEAAKG 600
+ A E GH DVA L + G ++ I+AA+G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G V+ V+ LL G + G + + G +A++LL +H G
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM-GSARVAELLL-LH------G 67
Query: 187 IKGECT-------PLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+ C P+ +AA GF++ + +L GA ++ + + G P+ A GH V
Sbjct: 68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 127
Query: 240 RVL 242
R L
Sbjct: 128 RYL 130
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 536 AAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
AA++G + VR L+++G + + G TAL AC+ G D A L S G
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
++ A+ + +V +I +G ++ +++ GNT L YA +++LL+ A V NE
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 257
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAG 281
G T L A H ++L + AG
Sbjct: 258 AGETALDIARKKHHKECEELLEQAQAG 284
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 534 MEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLL 582
++ A + L LV +++ +G + AK G+TAL YA D LLL
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 597 AAKGGHANVVQLLLDF-PRSVHAKTQTGDT-ALTYACENGHTDVADLLLSYGA------- 647
AA+ GH +V+ L + P + A Q + A A ENGH V + L
Sbjct: 135 AAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAXI 194
Query: 648 NLDNSTMLIEAAKG-GHANVVQLLLDFP 674
+N AA G GH NV+ LLD P
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCP 222
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 536 AAQEGHLELVRYLLD-SGAQVHAKTQTGDT-ALTYACENGHTDVADLLLSYGA------- 586
AA+ GHL ++ L + + ++ A Q + A A ENGH V + L
Sbjct: 135 AAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAXI 194
Query: 587 NLDNSTMLIEAAKG-GHANVVQLLLDFP 613
+N AA G GH NV+ LLD P
Sbjct: 195 QAENYYAFRWAAVGRGHHNVINFLLDCP 222
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 193 PLMEAASSGFIEIVRLLINHG---ADVNGQSSSGNTPLMYACAGGHEAVVRV-------- 241
PL AA + + IV+ L+ + AD++ + S GNT L V
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYN 210
Query: 242 -LLECGANV-------EDHNENGHTPLMEAASAGHVGVAKILLE 277
+L GA + E N G TPL AAS+G +GV +L+
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 193 PLMEAASSGFIEIVRLLINHG---ADVNGQSSSGNTPL--MYACAGGHEAVVR------- 240
PL AA + IV L +G AD+ Q S GNT L + A A +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 241 -VLLECGANVEDHN------ENGHTPLMEAASAGHVGVAKILLE 277
+L++C D N +G +PLM AA G +G+ + ++
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
>pdb|2QZV|A Chain A, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
pdb|2QZV|B Chain B, Draft Crystal Structure Of The Vault Shell At 9 Angstroms
Resolution
Length = 873
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 107 AAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA 166
A + R P QNE VQ G V+ V G + T DE L +
Sbjct: 381 AKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVI-----GSTYMLTQDE--VLWEKELPS 433
Query: 167 GYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
G EL L H + DRG KG PL +A +V + H A V
Sbjct: 434 GVEEL---LNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQ 481
>pdb|2ZUO|A Chain A, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|B Chain B, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|C Chain C, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|D Chain D, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|E Chain E, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|F Chain F, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|G Chain G, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|H Chain H, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|I Chain I, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|J Chain J, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|K Chain K, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|L Chain L, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZUO|M Chain M, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|N Chain N, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|O Chain O, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|P Chain P, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Q Chain Q, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|R Chain R, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|S Chain S, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|T Chain T, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|U Chain U, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|V Chain V, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|W Chain W, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|X Chain X, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Y Chain Y, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV4|Z Chain Z, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|AA Chain a, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|BB Chain b, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|CC Chain c, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|DD Chain d, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|EE Chain e, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|FF Chain f, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|GG Chain g, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|HH Chain h, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|II Chain i, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|JJ Chain j, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|KK Chain k, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|LL Chain l, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
pdb|2ZV5|MM Chain m, The Structure Of Rat Liver Vault At 3.5 Angstrom
Resolution
Length = 861
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 107 AAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA 166
A + R P QNE VQ G V+ V G + T DE L +
Sbjct: 369 AKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVI-----GSTYMLTQDE--VLWEKELPS 421
Query: 167 GYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
G EL L H + DRG KG PL +A +V + H A V
Sbjct: 422 GVEEL---LNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQ 469
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,519,812
Number of Sequences: 62578
Number of extensions: 800719
Number of successful extensions: 3756
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1707
Number of HSP's gapped (non-prelim): 1091
length of query: 739
length of database: 14,973,337
effective HSP length: 106
effective length of query: 633
effective length of database: 8,340,069
effective search space: 5279263677
effective search space used: 5279263677
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)