RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy903
(739 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 363 bits (935), Expect = e-119
Identities = 128/501 (25%), Positives = 185/501 (36%), Gaps = 88/501 (17%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+ G G TPL A+ G + IV+ L+ GA N + TPL A GH V
Sbjct: 5 ISGGGGGESG-LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACY 299
+ LL+ A V ++ TPL AA GH + K+LLE A N + + L +A
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAR 122
Query: 300 KGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFF 359
+GH++ V LL A Q T + T L A+ G V VA+LLL+ A
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH----------- 171
Query: 360 PNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY 419
+ G + L +A
Sbjct: 172 ----------------------------------------PNAAGKNGLTPLHVAVHHNN 191
Query: 420 YELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGL 479
++ ++LL + G TPL AA V
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNG-YTPLHIAAKQN-----QVEV------------------ 227
Query: 480 QASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEA 536
A +L G NA + + T L LA G ++ LL AN LG TPL
Sbjct: 228 -ARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Query: 537 AQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNS 591
AQEGH+ + L+ G V A T+ G T L A G+ + LL + A++
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 345
Query: 592 TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 651
+ L +AA+ GH ++V LLL S + + G T L A G+ V D+L
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 405
Query: 652 STMLIEAAKGGHANVVQLLLD 672
+ + + V +LD
Sbjct: 406 VL-VSDKHRMSFPETVDEILD 425
Score = 356 bits (916), Expect = e-116
Identities = 128/518 (24%), Positives = 196/518 (37%), Gaps = 95/518 (18%)
Query: 146 GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEI 205
G S + G + L +A G+ + + LL A+ +K E TPL AA +G E+
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEV 62
Query: 206 VRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAAS 265
+ L+ + A VN ++ TPL A GH +V++LLE AN GHTPL AA
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 266 AGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHT 325
GHV LLE A + + + L +A G + + LL A T
Sbjct: 123 EGHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 326 ALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDG 385
L A ++++ KLLL G
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGG-------------------------------------- 203
Query: 386 DVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 445
S H G + L +A E+A+ LL + ++G TPL
Sbjct: 204 -------------SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV-TPL 249
Query: 446 MEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHTEETQETALT 504
AA G + + A L+ A N + T L
Sbjct: 250 HLAAQEG-----HAEMVAL--------------------LLSKQANGNLGNKS-GLTPLH 283
Query: 505 LACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQT 561
L G + VAD L+K+G ++ TPL A+ G+++LV++LL A V+AKT+
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 562 GDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 616
G + L A + GHTD+ LLL GA+ D +T L A + G+ +V +L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK------ 397
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTM 654
+T ++ + D +L + +
Sbjct: 398 VVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGEELI 435
Score = 354 bits (910), Expect = e-115
Identities = 138/537 (25%), Positives = 202/537 (37%), Gaps = 124/537 (23%)
Query: 212 HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGV 271
G G SG TPL A GH +V+ LL+ GA+ N TPL AA AGH V
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
AK LL+ A +N + + ++ L A GH +MV+ LL A+ T HT L A+
Sbjct: 63 AKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121
Query: 332 MDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVK 391
+GHVE LL+ A
Sbjct: 122 REGHVETVLALLEKEA-------------------------------------------- 137
Query: 392 KLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASS 451
S T +G + L +A G +A++LL A+ G G TPL A
Sbjct: 138 -------SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL-TPLHVAVHH 189
Query: 452 GRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGG 510
+ V +L+P G ++ T L +A
Sbjct: 190 NNL----DIVK---------------------LLLPRGGSPHSPAWN-GYTPLHIAAKQN 223
Query: 511 FLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALT 567
++VA LL+ G + + TPL AAQEGH E+V LL A + ++G T L
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 568 YACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQT 622
+ GH VAD+L+ +G + T L A+ G+ +V+ LL V+AKT+
Sbjct: 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 623 GDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 677
G + L A + GHTD+ LLL GA+ D +T L A + G+ +V +L
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD-- 401
Query: 678 IGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ S V + + + D +L +
Sbjct: 402 --------------------ETSFVLVSDKHRMSFP---------ETVDEILDVSED 429
Score = 326 bits (838), Expect = e-104
Identities = 127/486 (26%), Positives = 195/486 (40%), Gaps = 85/486 (17%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A G + VK LL G S + + + E+ L +A AG+ E+A+ LL A V +
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL AA G +V+LL+ + A+ N +++G+TPL A GH V LLE A+
Sbjct: 81 -QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ G TPL AA G V VA++LLE A N + + + L +A + +LD+V+ L
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSS 369
L G +T L A+ VEVA+ LL G
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS--------------------- 237
Query: 370 ISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 429
+ + +G + L LA G+ E+ +LL+
Sbjct: 238 ------------------------------ANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 430 HANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-G 488
AN G TPL A G + + +LI G
Sbjct: 268 QANGNLGNKSGL-TPLHLVAQEGH-------------------------VPVADVLIKHG 301
Query: 489 AKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELV 545
++A T T L +A G + + FLL++ A++ +PL +AAQ+GH ++V
Sbjct: 302 VMVDATTRM-GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 546 RYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANV 605
LL +GA + + G T L A G+ V D+L + + +
Sbjct: 361 TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL-VSDKHRMSFPET 419
Query: 606 VQLLLD 611
V +LD
Sbjct: 420 VDEILD 425
Score = 282 bits (723), Expect = 9e-88
Identities = 130/541 (24%), Positives = 196/541 (36%), Gaps = 112/541 (20%)
Query: 21 GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKL 80
G S + G + L +A G+ + + LL A+ +K E TPL AA +G
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAG---- 58
Query: 81 ATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTV 139
EV + L L A N + +++++ L A G V
Sbjct: 59 --------HTEVAKYL-------LQNKA-------KVNAKAKDDQTPLHCAARIGHTNMV 96
Query: 140 KKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAAS 199
K LL + + T G + L +A G+ E LL A+ KG TPL AA
Sbjct: 97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAK 155
Query: 200 SGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
G + + LL+ A N +G TPL A + +V++LL G + NG+TP
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 215
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L AA V VA+ LL+YG N S + + L LA +GH +MV LLS A+
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLV 379
T L + +GHV VA +L+ G
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVM------------------------------- 303
Query: 380 QACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 439
V TT G + L +A G +L + LL A+V +
Sbjct: 304 --------------------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343
Query: 440 GECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEET 498
G +PL +AA G + V+ +L+ GA N + +
Sbjct: 344 GY-SPLHQAAQQGHT----DIVT---------------------LLLKNGASPNEVSSD- 376
Query: 499 QETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAK 558
T L +A G++ V D L + + + + E V +LD +
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDE---TSFVLVSDKHRMSFPETVDEILDVSEDEGEE 433
Query: 559 T 559
Sbjct: 434 L 434
Score = 273 bits (702), Expect = 9e-85
Identities = 118/432 (27%), Positives = 178/432 (41%), Gaps = 48/432 (11%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G + VK LL G S + + + E+ L +A AG+ E+A+ LL A V +
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPL AA G +++ L L+ A N N
Sbjct: 81 -QTPLHCAARIG------------HTNMVKLL-------LENNA-------NPNLATTAG 113
Query: 125 RS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
+ L A +G V+TV LL + S T +G + L +A G +A++LL A+
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
G G TPL A ++IV+LL+ G + + +G TPL A V R LL
Sbjct: 174 AAGKNGL-TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
+ G + + G TPL AA GH + +LL A N N+ + L L +GH+
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGHV 291
Query: 304 DMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDK 363
+ L+ G + T +T L AS G++++ K LL A V+A + + P
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSP--- 347
Query: 364 CERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELA 423
L QA G V LL G S +E + +G + L++A GY +
Sbjct: 348 --------------LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT 393
Query: 424 QVLLAMHANVED 435
VL +
Sbjct: 394 DVLKVVTDETSF 405
Score = 248 bits (636), Expect = 4e-75
Identities = 101/438 (23%), Positives = 147/438 (33%), Gaps = 117/438 (26%)
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI 370
S G + T L AS GH+ + K LL GA
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA----------------------- 38
Query: 371 SYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 430
S + + + E+ L +A AG+ E+A+ LL
Sbjct: 39 ----------------------------SPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70
Query: 431 ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GA 489
A V + TPL AA G +L+ A
Sbjct: 71 AKVNAKAKDD-QTPLHCAARIGH-------------------------TNMVKLLLENNA 104
Query: 490 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVR 546
N T T L +A G ++ LL+ A+ TPL AA+ G + +
Sbjct: 105 NPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163
Query: 547 YLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGG 601
LL+ A +A + G T L A + + D+ LLL G + + T L AAK
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 223
Query: 602 HANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLI 656
V + LL + S +A++ G T L A + GH ++ LLLS AN T L
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Query: 657 EAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYA 716
A+ GH V +L+ V A T+ G T L A
Sbjct: 284 LVAQEGHVPVADVLIK-------------------------HGVMVDATTRMGYTPLHVA 318
Query: 717 CENGHTDVADLLLSYGAN 734
G+ + LL + A+
Sbjct: 319 SHYGNIKLVKFLLQHQAD 336
Score = 215 bits (550), Expect = 1e-62
Identities = 84/347 (24%), Positives = 138/347 (39%), Gaps = 42/347 (12%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G V+TV LL + S T +G + L +A G +A++LL A+ G G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPL A + ++++ L L + + N
Sbjct: 180 L-TPLHVAVHHN------------NLDIVKLL-------LPRGG-------SPHSPAWNG 212
Query: 125 RS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
+ L A V+ + LL G S + + +G + L LA G+ E+ +LL+ AN
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
G TPL A G + + +LI HG V+ + G TPL A G+ +V+ LL
Sbjct: 273 LGNKSGL-TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
+ A+V + G++PL +AA GH + +LL+ GA N + + L +A G++
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKRLGYI 390
Query: 304 DMVRFL---LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ L + + E +LD
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFP---------ETVDEILDVSE 428
Score = 190 bits (486), Expect = 1e-53
Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 42/323 (13%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A G V+ + LL + G + L +A ++ ++LL +
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
G TPL AA EV R L L + N
Sbjct: 210 WNG-YTPLHIAAKQNQ------------VEVARSL-------LQYGG-------SANAES 242
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
+ L A +G + V LL++ + + G + L L G+ +A VL+
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
V+ G TPL A+ G I++V+ L+ H ADVN ++ G +PL A GH +V
Sbjct: 303 MVDATTRMG-YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 361
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL---LEYGAGINTHSNEFKESALTLA 297
+LL+ GA+ + + +G TPL A G++ V +L + + +
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH--------- 412
Query: 298 CYKGHLDMVRFLLSAGADQEHKT 320
+ V +L D+ +
Sbjct: 413 -RMSFPETVDEILDVSEDEGEEL 434
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 250 bits (642), Expect = 5e-77
Identities = 99/438 (22%), Positives = 152/438 (34%), Gaps = 102/438 (23%)
Query: 172 AQVLLAMHANVEDRGIKGECTPLMEAASSG-FIEIVRLLINHGADVNGQSSSGNTPLMYA 230
A L A G + L+EAA SG +++ LL + + +TPL A
Sbjct: 7 ALDLADPSAKAVLTGEYKK-DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65
Query: 231 CAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFK 290
+V++LL+ GA+V ++ G PL A S GH V ++LL++GA +N + ++
Sbjct: 66 AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQ 124
Query: 291 ESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSV 350
+ L A K +++ LLS GAD +A+ A E +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS--- 181
Query: 351 SAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESL 410
L+QA + D+ VKK L + E+
Sbjct: 182 ---------------------------LLQAAREADLAKVKKTLALEIINFKQPQSHETA 214
Query: 411 LSLACSAGYY---ELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARH 467
L A ++ + ++A++LL ANV ++ TPL AA
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDF-MTPLHVAAERAH-------------- 259
Query: 468 DFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE 526
+L GAK+NA G
Sbjct: 260 -----------NDVMEVLHKHGAKMNALD------------------------SLG---- 280
Query: 527 LGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
T L AA GHL+ R LL G+ + G TA E +LS
Sbjct: 281 ---QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA-----VQQILSEST 332
Query: 587 NL---DNSTMLIEAAKGG 601
+ D L+EA+K G
Sbjct: 333 PMRTSDVDYRLLEASKAG 350
Score = 245 bits (629), Expect = 4e-75
Identities = 95/469 (20%), Positives = 141/469 (30%), Gaps = 133/469 (28%)
Query: 204 EIVRLLINHGADVNGQSSSGNTPLMYACA-GGHEAVVRVLLECGANVEDHNENGHTPLME 262
+ L + A L+ A G E ++ +L N + TPL
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 263 AASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDE 322
AA V + ++LL++GA ++ ++ L AC GH ++ LL GA
Sbjct: 65 AAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 323 MHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQAC 382
T L EA+ VEV L
Sbjct: 124 QFTPLHEAASKNRVEVCSL----------------------------------------- 142
Query: 383 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 442
LL+ G G+S + +A + E H+
Sbjct: 143 ----------LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS----------- 181
Query: 443 TPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETA 502
L++AA + V L + ETA
Sbjct: 182 --LLQAAREA-------------------DLAKVKKT-----LALEIINFKQPQS-HETA 214
Query: 503 LTLACCGGF---LDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
L A VA+ LL+ GAN+ TPL AA+ H +++ L GA+++
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSV 616
A G TAL A GH LLLSYG++
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSD----------------------------P 306
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANL---DNSTMLIEAAKGG 662
+ G TA E +LS + D L+EA+K G
Sbjct: 307 SIISLQGFTAAQMGNEA-----VQQILSESTPMRTSDVDYRLLEASKAG 350
Score = 229 bits (586), Expect = 7e-69
Identities = 98/445 (22%), Positives = 146/445 (32%), Gaps = 107/445 (24%)
Query: 137 KTVKKLLTEGRSVHETTDEGE-SLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
K+ L T + + LL A S +L +L ++ N + TPL
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK-STPLH 63
Query: 196 EAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNEN 255
AA + IV+LL+ HGADV+ + G PL AC+ GH V +LL+ GA V +
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW 123
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
TPL EAA K +++ LLS GAD
Sbjct: 124 QFTPLHEAA----------------------------------SKNRVEVCSLLLSHGAD 149
Query: 316 QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYS 375
+A+ A E +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHS---------------------------- 181
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYY---ELAQVLLAMHAN 432
L+QA + D+ VKK L + E+ L A ++ + ++A++LL AN
Sbjct: 182 --LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 433 VEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKI 491
V ++ TPL AA +L GAK+
Sbjct: 240 VNEKNKDF-MTPLHVAAERAH-------------------------NDVMEVLHKHGAKM 273
Query: 492 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL 548
NA +TAL A G L LL G++ + + T E V+ +
Sbjct: 274 NALDSL-GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQI 327
Query: 549 LDSGAQVHAKTQTGDTALTYACENG 573
L + D L A + G
Sbjct: 328 LSESTPMRTS--DVDYRLLEASKAG 350
Score = 208 bits (533), Expect = 3e-61
Identities = 86/360 (23%), Positives = 132/360 (36%), Gaps = 72/360 (20%)
Query: 388 KTVKKLLTEGRSVHETTDEGE-SLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 446
K+ L T + + LL A S +L +L ++ N + TPL
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK-STPLH 63
Query: 447 EAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTL 505
AA R ++ +L+ GA ++A + L
Sbjct: 64 LAAGYNR-------------------------VRIVQLLLQHGADVHAKDKG-GLVPLHN 97
Query: 506 ACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTG 562
AC G +V + LLK+GA + TPL EAA + +E+ LL GA G
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Query: 563 DTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQT 622
+A+ A + + L++AA+ V+ L + Q+
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS-------LLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 623 GDTALTYACENGH---TDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFP 674
+TAL A + H VA+LLL GAN+ D T L AA+ H +V+++L
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH--- 267
Query: 675 RSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
G + ++A G TAL A GH LLLSYG++
Sbjct: 268 --------------------KHG--AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 203 bits (519), Expect = 2e-59
Identities = 100/483 (20%), Positives = 141/483 (29%), Gaps = 155/483 (32%)
Query: 267 GHVG-VAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHT 325
G G A L + A K+ L A ++ L + T
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 326 ALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDG 385
L A+ V + +LLL GA
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGA-------------------------------------- 82
Query: 386 DVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 445
VH G L ACS G+YE+ ++LL A V + TPL
Sbjct: 83 -------------DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF-TPL 128
Query: 446 MEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALT 504
EAAS R E S +L+ GA ++A+
Sbjct: 129 HEAASKNRV----EVCS---------------------LLLSHGADPTLVNCH-GKSAVD 162
Query: 505 LACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
+A + + K + L++AA+E L V+ L + Q+ +T
Sbjct: 163 MAPTPELRERLTYEFKGHS---------LLQAAREADLAKVKKTLALEIINFKQPQSHET 213
Query: 565 ALTYACENGH---TDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
AL A + H VA+LLL GAN V+ K +
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGAN----------------------------VNEKNK 245
Query: 622 TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRS 676
T L A E H DV ++L +GA + T L AA GH +LLL
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL----- 300
Query: 677 VIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLR 736
S G S + G TA E +LS +R
Sbjct: 301 ------------------SYG--SDPSIISLQGFTAAQMGNEA-----VQQILSESTPMR 335
Query: 737 NRT 739
Sbjct: 336 TSD 338
Score = 200 bits (510), Expect = 5e-58
Identities = 73/331 (22%), Positives = 121/331 (36%), Gaps = 37/331 (11%)
Query: 123 NERSLVQACSDGDVKTVKKLLTE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ L++A G+ + + LLT + H + + L LA + Q+LL A+
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V + G PL A S G E+ LL+ HGA VN TPL A + V +
Sbjct: 84 VHAKDKGGL-VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
LL GA+ N +G + + A + + + + A +
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ-------------AAREA 189
Query: 302 HLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH---VEVAKLLLDSGAQSVSAYARHDF 358
L V+ L+ + TAL A H +VA+LLL GA
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---------- 239
Query: 359 FPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG 418
N+K + T L A ++ L G ++ G++ L A AG
Sbjct: 240 -VNEKNKD----FMT---PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 419 YYELAQVLLAMHANVEDRGIKGECTPLMEAA 449
+ + ++LL+ ++ ++G T
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGF-TAAQMGN 321
Score = 177 bits (451), Expect = 8e-50
Identities = 85/352 (24%), Positives = 130/352 (36%), Gaps = 51/352 (14%)
Query: 1 SLVQACSDGDVKTVKKLLTE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 59
L++A G+ + + LLT + H + + L LA + Q+LL A+V
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 60 RGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
+ G PL A S G EV L L A N
Sbjct: 87 KDKGGL-VPLHNACSYG------------HYEVTELL-------LKHGA-------CVNA 119
Query: 120 RPQNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 178
+ + L +A S V+ LL+ G G+S + +A + E
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179
Query: 179 HANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEA- 237
H+ L++AA + V+ + Q S T L A A H
Sbjct: 180 HS-------------LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226
Query: 238 --VVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALT 295
V +LL GANV + N++ TPL AA H V ++L ++GA +N + ++AL
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALH 285
Query: 296 LACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
A GHL R LLS G+D + + TA + E + +L
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSEST 332
Score = 172 bits (438), Expect = 6e-48
Identities = 81/334 (24%), Positives = 125/334 (37%), Gaps = 52/334 (15%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A V+ V+ LL G VH G L ACS G+YE+ ++LL A V +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPL EAAS ++ +L L A + +
Sbjct: 125 F-TPLHEAASKNRVEVC---------SLL----------LSHGA-------DPTLVNCHG 157
Query: 125 RS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
+S + A + + + +G SLL A + LA+
Sbjct: 158 KSAVDMAPTPELRERLTYEF-----------KGHSLL-QAAREADLAKVKKTLALEIINF 205
Query: 184 DRGIKGECTPLMEAASSGF---IEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
+ E T L A +S ++ LL+ GA+VN ++ TPL A H V+
Sbjct: 206 KQPQSHE-TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME 264
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
VL + GA + + G T L AA AGH+ ++LL YG+ + + +A +
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI-ISLQGFTAAQMGN-- 321
Query: 301 GHLDMVRFLLSAGADQEHKTDEMHTALMEASMDG 334
+ V+ +LS L+EAS G
Sbjct: 322 ---EAVQQILSESTPMRTSDV--DYRLLEASKAG 350
Score = 63.3 bits (155), Expect = 8e-11
Identities = 42/238 (17%), Positives = 73/238 (30%), Gaps = 72/238 (30%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYY---ELAQVLLAMHANV 57
SL+QA + D+ VKK L + E+ L A ++ + ++A++LL ANV
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 58 EDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNE 117
++ TPL AA + EVL A
Sbjct: 241 NEKNKDF-MTPLHVAAERAHNDVM---------EVL----------HKHGA-------KM 273
Query: 118 NPRPQNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
N ++ L +A G ++T + LL+ G + +G
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF------------------- 314
Query: 177 AMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGG 234
T E V+ +++ + + L+ A G
Sbjct: 315 ---------------TAAQMGN-----EAVQQILSESTPMRTS--DVDYRLLEASKAG 350
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 234 bits (599), Expect = 1e-71
Identities = 73/306 (23%), Positives = 122/306 (39%), Gaps = 27/306 (8%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
S L+ G + + D + + + AG + + L + + D
Sbjct: 2 GSSHHHHHHSSGLVPRGSHM-ASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA--VS 58
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ +P+ EAA G +R LI+ G VN ++ +PL AC GGH + V++LL+ GA V
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ HTPL A +G +LL++GA + S+ S + A +GH++ V L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSL 176
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSS 369
++ G + +HK + T L A + K LL+SGA N +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-----------VNQGKGQ--- 222
Query: 370 ISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 429
+ L + L+ G EG+ + L LAQ+ L
Sbjct: 223 --DS---PLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLER 275
Query: 430 H-ANVE 434
A++
Sbjct: 276 EGASLP 281
Score = 208 bits (532), Expect = 5e-62
Identities = 66/316 (20%), Positives = 111/316 (35%), Gaps = 43/316 (13%)
Query: 37 LACSAGYYELAQVLLAMHANVEDRGIKGE----CTPLMEAASSGFGKLATGDGKLADPEV 92
+ S ++ + L+ +++ K P G L+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL-------- 52
Query: 93 LRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRSVHE 151
++ S + +A G +++ L+++G +V+
Sbjct: 53 -------------------------MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI 87
Query: 152 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLIN 211
T + S L AC G+ ++LL A V TPL A SG + V LL+
Sbjct: 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW-HTPLFNACVSGSWDCVNLLLQ 146
Query: 212 HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGV 271
HGA V +S +P+ A GH V L+ G N++ + TPL A
Sbjct: 147 HGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
K LLE GA +N + ++S L ++ L+ GAD + K E +
Sbjct: 206 VKKLLESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263
Query: 332 MDGHVEVAKLLLDSGA 347
+ + L GA
Sbjct: 264 PESPLAQ-LFLEREGA 278
Score = 201 bits (513), Expect = 2e-59
Identities = 69/342 (20%), Positives = 111/342 (32%), Gaps = 74/342 (21%)
Query: 413 LACSAGYYELAQVLLAMHANVEDRGIKGE----CTPLMEAASSGRQCNLNESVSAYARHD 468
+ S ++ + L+ +++ K P G + N
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN---------- 50
Query: 469 FFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG 528
+V+ + + A G L+ G + +
Sbjct: 51 -PLMGDAVSD---------------------WSPMHEAAIHGHQLSLRNLISQGWAVNII 88
Query: 529 AS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
+ +PL EA GHL V+ LL GAQV+ T T L AC +G D +LLL +G
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 586 ANL----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADL 641
A++ D ++ + EAA+ GH V L+ + ++ K T L ACEN
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208
Query: 642 LLSYGANL----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQG 697
LL GA++ + L + + LL+DF G
Sbjct: 209 LLESGADVNQGKGQDSPLHAVVRTASEELACLLMDF-----GAD---------------- 247
Query: 698 KKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRNRT 739
AK G + L GA+L +
Sbjct: 248 ----TQAKNAEGKRPVELVPPESPLAQL-FLEREGASL-PKP 283
Score = 192 bits (490), Expect = 4e-56
Identities = 74/396 (18%), Positives = 114/396 (28%), Gaps = 119/396 (30%)
Query: 197 AASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENG 256
+S L+ G+ + + + G + L + D +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQ-GGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSD 59
Query: 257 HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ 316
+P+ EAA GH +R L+S G
Sbjct: 60 WSPMHEAA----------------------------------IHGHQLSLRNLISQGWAV 85
Query: 317 EHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSR 376
T + + L EA + GH+ K+LL GAQ
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQ---------------------------- 117
Query: 377 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 436
V+ T + + L AC +G ++ +LL A+V+
Sbjct: 118 -----------------------VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154
Query: 437 GIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHT 495
+P+ EAA G E V+ LI G I+
Sbjct: 155 --SDLASPIHEAARRGHV----ECVN---------------------SLIAYGGNIDHKI 187
Query: 496 EETQETALTLACCGGFLDVADFLLKNGANIELGAS--TPLMEAAQEGHLELVRYLLDSGA 553
T L LAC LL++GA++ G +PL + EL L+D GA
Sbjct: 188 SH-LGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246
Query: 554 QVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
AK G + L GA+L
Sbjct: 247 DTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 191 bits (488), Expect = 1e-55
Identities = 67/392 (17%), Positives = 118/392 (30%), Gaps = 116/392 (29%)
Query: 263 AASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDE 322
+S H + L+ G+ + + K+ + + G D L + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDG--KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59
Query: 323 MHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQAC 382
+ + EA++ GH + L+ G
Sbjct: 60 W-SPMHEAAIHGHQLSLRNLISQGW----------------------------------- 83
Query: 383 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 442
+V+ T + S L AC G+ ++LL A V
Sbjct: 84 ----------------AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW-H 126
Query: 443 TPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQET 501
TPL A SG + V+ +L+ GA + ++ +
Sbjct: 127 TPLFNACVSGSW----DCVN---------------------LLLQHGASVQPESDL--AS 159
Query: 502 ALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAK 558
+ A G ++ + L+ G NI+ S TPL A + V+ LL+SGA V+ +
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-Q 218
Query: 559 TQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
+ D+ L ++A LL+ +GA+ A
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGAD----------------------------TQA 250
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANLD 650
K G + L GA+L
Sbjct: 251 KNAEGKRPVELVPPESPLAQL-FLEREGASLP 281
Score = 152 bits (386), Expect = 2e-41
Identities = 56/257 (21%), Positives = 87/257 (33%), Gaps = 32/257 (12%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
S + A G+ + L++ V +PL EA G
Sbjct: 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCV------ 108
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEG 146
++L L A N + + L AC G V LL G
Sbjct: 109 ---KIL----------LKHGA-------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148
Query: 147 RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIV 206
SV +D S + A G+ E L+A N++ + TPL A + V
Sbjct: 149 ASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHL-GTPLYLACENQQRACV 206
Query: 207 RLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASA 266
+ L+ GADVN Q ++PL E + +L++ GA+ + N G P+
Sbjct: 207 KKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265
Query: 267 GHVGVAKILLEYGAGIN 283
+ L GA +
Sbjct: 266 SPL-AQLFLEREGASLP 281
Score = 93.3 bits (233), Expect = 4e-21
Identities = 53/249 (21%), Positives = 83/249 (33%), Gaps = 69/249 (27%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 99 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SD 156
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
+P+ EAA G E + L + N +
Sbjct: 157 LASPIHEAARRGH------------VECVNSLIA----------------YGGNIDHKIS 188
Query: 125 R---SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
L AC + VKKLL G A+
Sbjct: 189 HLGTPLYLACENQQRACVKKLLESG---------------------------------AD 215
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
V KG+ +PL + E+ LL++ GAD +++ G P+ A +
Sbjct: 216 VNQG--KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-F 272
Query: 242 LLECGANVE 250
L GA++
Sbjct: 273 LEREGASLP 281
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 236 bits (605), Expect = 2e-71
Identities = 57/426 (13%), Positives = 119/426 (27%), Gaps = 80/426 (18%)
Query: 149 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRL 208
++ DE + +A G + + L+ + + G CT L A G ++ +
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG-CTALHLACKFGCVDTAKY 71
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH 268
L + G + G P+ A +V L+E G P
Sbjct: 72 LASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDE 123
Query: 269 VGVAKILLEYGAGINTHSNEFKESALTLACYKG--HLDMVRFLLSAGADQEHKTDEMHTA 326
V + G + + ++AL G +L+M++ L+ GA K T
Sbjct: 124 REVNE------IGSHV-KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176
Query: 327 LMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGD 386
LM A + E L++D+ S
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSL---------------------------------- 202
Query: 387 VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 446
+ +G S L A + ++A + M +V + PL
Sbjct: 203 ------------RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT-VPLY 249
Query: 447 EAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLA 506
+ + + ++ + +L + A
Sbjct: 250 LSVRAAMV----LLTKELLQKTDVFLIQACPYHNGTTVL--------PDRVVWLDFVPAA 297
Query: 507 CCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
+V L + + + ++ ++ + R L A V ++++
Sbjct: 298 ADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRA 357
Query: 564 TALTYA 569
+ +
Sbjct: 358 RSSAVS 363
Score = 233 bits (598), Expect = 2e-70
Identities = 63/475 (13%), Positives = 116/475 (24%), Gaps = 146/475 (30%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
N + + AA G + VR LI G Q+ G T L AC G
Sbjct: 11 LNRIKSDDEN-MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACY 299
+ L G +G P+ A A + L+E + +L
Sbjct: 70 KYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERG-------QMPESLLNE 120
Query: 300 KGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDG--HVEVAKLLLDSGAQSVSAYARHD 357
++ G+ +H + TAL G ++E+ K+L+ GA
Sbjct: 121 CDEREVNE----IGSHVKHCKGQ--TALHWCVGLGPEYLEMIKILVQLGA---------- 164
Query: 358 FFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA 417
S E+ L A
Sbjct: 165 -----------------------------------------SPTAKDKADETPLMRAMEF 183
Query: 418 GYYELAQVLLAMH-----ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPN 472
E +++ ++ +G + L A
Sbjct: 184 RNREALDLMMDTVPSKSSLRLDYANKQG-NSHLHWAILINW------------------- 223
Query: 473 DKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS- 530
++ + G +N E L L+ + + LL+ + A
Sbjct: 224 ------EDVAMRFVEMGIDVNMEDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276
Query: 531 ---------------TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHT 575
+ AA E+++ L + +V TG +
Sbjct: 277 YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336
Query: 576 DVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYA 630
V + L+ A V ++++ + +
Sbjct: 337 AVKRMKLAPSAP----------------------------VRTRSRSRARSSAVS 363
Score = 211 bits (539), Expect = 4e-62
Identities = 62/467 (13%), Positives = 110/467 (23%), Gaps = 135/467 (28%)
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
S++ + +A KG D VR L+ G + TAL A G V+ AK
Sbjct: 13 RIK-SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
L G + + + A V L+
Sbjct: 72 LASVGEV-----------HSLWHGQ------K---PIHLAVMANKTDLVVALVEGA---- 107
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESV 461
+ G+ SL E+ ++ ++V+ T L G
Sbjct: 108 --KERGQMPESLLNECDEREVNEIG----SHVKH---CKGQTALHWCVGLGP-------- 150
Query: 462 SAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLL- 519
L+ IL+ GA A + ET L A + D ++
Sbjct: 151 ---------------EYLEMIKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMD 194
Query: 520 ----KNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACEN 572
K+ ++ ++ L A ++ ++ G V+ + L +
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254
Query: 573 GHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACE 632
+ LL + +V + A +
Sbjct: 255 AMVLLTKELLQKTDVF---------------LIQACPYHNGTTVLPDRVVWLDFVPAAAD 299
Query: 633 NGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSH 692
+V LL
Sbjct: 300 PSKQEVLQLLQEKLDE-------------------------------------------- 315
Query: 693 LCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRNRT 739
V TG + V + L+ A +R R+
Sbjct: 316 ---------VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRS 353
Score = 204 bits (521), Expect = 2e-59
Identities = 57/362 (15%), Positives = 110/362 (30%), Gaps = 60/362 (16%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G V++L+ G S G + L LAC G + A+ L ++
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WH 83
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
P+ A + L L ++ A P
Sbjct: 84 GQKPIHLAVMANKTDLV---------VAL----------VEGAK-------ERGQMP--- 114
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG--YYELAQVLLAMHANV 182
+ + + H +G++ L G Y E+ ++L+ + A+
Sbjct: 115 --ESLLNECDEREVNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLIN-----HGADVNGQSSSGNTPLMYACAGGHEA 237
+ E TPLM A E + L+++ ++ + GN+ L +A E
Sbjct: 167 TAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225
Query: 238 VVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFK------- 290
V +E G +V + PL + A V + K LL+ + +
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285
Query: 291 -----ESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS 345
+ A ++++ L + + ++ V ++ L
Sbjct: 286 DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345
Query: 346 GA 347
A
Sbjct: 346 SA 347
Score = 198 bits (506), Expect = 3e-57
Identities = 60/446 (13%), Positives = 122/446 (27%), Gaps = 116/446 (26%)
Query: 24 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATG 83
++ DE + +A G + + L+ + + G CT L A G
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG-CTALHLACKFGC------ 65
Query: 84 DGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKL 142
+ + L S E + + + A V L
Sbjct: 66 ------VDTAKYLAS----------------VGEVHSLWHGQKPIHLAVMANKTDLVVAL 103
Query: 143 LTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG- 201
+ + G+ SL E+ ++ ++V+ T L G
Sbjct: 104 VEGA------KERGQMPESLLNECDEREVNEIG----SHVKH---CKGQTALHWCVGLGP 150
Query: 202 -FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC-----GANVEDHNEN 255
++E++++L+ GA + + TPLM A + + ++++ ++ N+
Sbjct: 151 EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
G++ L A VA +E G +N + L L+ + + + LL
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNM-EDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269
Query: 316 QEHKTDEMH-------------TALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPND 362
+ H + A+ EV +LL + +
Sbjct: 270 FLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-------------- 315
Query: 363 KCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYEL 422
V + + G +
Sbjct: 316 -------------------------------------VVRSLNTGAGGAVKRKKKAAPAV 338
Query: 423 AQVLLAMHANVEDRGIKGECTPLMEA 448
++ LA A V R +
Sbjct: 339 KRMKLAPSAPVRTRSRSRA-RSSAVS 363
Score = 166 bits (423), Expect = 7e-46
Identities = 47/346 (13%), Positives = 91/346 (26%), Gaps = 62/346 (17%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G V T K L + G + G+ + LA A +L L+
Sbjct: 60 ACKFGCVDTAKYLASVGEVH--SLWHGQKPIHLAVMANKTDLVVALVEGAKER------- 110
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
P E + +++ +
Sbjct: 111 GQMPESLLNECDE---------------------------REVNEIGSHVKHCK----GQ 139
Query: 125 RSLVQACSDGD--VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH--- 179
+L G ++ +K L+ G S E+ L A E +++
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199
Query: 180 --ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEA 237
++ +G + L A + ++ + G DVN + + PL +
Sbjct: 200 SSLRLDYANKQG-NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL 258
Query: 238 VVRVLLECGANVEDHNE-------------NGHTPLMEAASAGHVGVAKILLEYGAGINT 284
+ + LL+ + AA V ++L E +
Sbjct: 259 LTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEA 330
S K + R L+ A ++ + +
Sbjct: 319 -SLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 121 bits (305), Expect = 6e-30
Identities = 38/277 (13%), Positives = 80/277 (28%), Gaps = 43/277 (15%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG--YYELAQVLLAMHANVED 59
+ + + H +G++ L G Y E+ ++L+ + A+
Sbjct: 115 ESLLNECDEREVNEIG------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168
Query: 60 RGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
+ E TPLM A + +++ + +++ +
Sbjct: 169 KDKADE-TPLMRAMEFRNREAL---------DLM------MDTVPSKSSL------RLDY 206
Query: 120 RPQNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 178
+ L A + + G V+ +E L L+ A L + LL
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266
Query: 179 HANVEDRGIKGE------------CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTP 226
+ + AA E+++LL +V ++G
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEA 263
+ AV R+ L A V + + +
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 229 bits (586), Expect = 4e-70
Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 24/264 (9%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
+P+ EAA G +R LI+ G VN ++ +PL AC GGH + V++LL+ GA V
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ HTPL A +G +LL++GA + S+ S + A +GH++ V L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLI 121
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI 370
+ G + +HK + T L A + K LL+SGA N +
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-----------VNQGKGQ---- 166
Query: 371 SYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 430
+ L + L+ G EG+ + L LAQ+ L
Sbjct: 167 -DS---PLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLERE 220
Query: 431 ANVEDRGIKGECTPLMEAASSGRQ 454
+
Sbjct: 221 GPPSLMQLCR-LRIRKCFGIQQHH 243
Score = 209 bits (534), Expect = 1e-62
Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 6/218 (2%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A G +++ L+++G +V+ T + S L AC G+ ++LL A V
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL A SG + V LL+ HGA V +S +P+ A GH V L+ G N+
Sbjct: 70 -HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ + TPL A K LLE GA +N + ++S L ++ L
Sbjct: 128 DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVARTASEELACLL 185
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ GAD + K E + + +A+L L+
Sbjct: 186 MDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREG 221
Score = 207 bits (529), Expect = 7e-62
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 24/272 (8%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
S + A G+ + L++ V +PL EA G + V++L+ HGA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
VNG ++ +TPL AC G V +LL+ GA+V+ + + +P+ EAA GHV L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 120
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
+ YG I+ H + L LAC V+ LL +GAD + + L +
Sbjct: 121 IAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTAS 178
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLT 395
E+A LL+D GA A N + +RP + + + + L
Sbjct: 179 EELACLLMDFGA-DTQA-------KNAEGKRP----------VELVPPESPL--AQLFLE 218
Query: 396 EGRSVHETTDEGESLLSLACSAGYYELAQVLL 427
+ ++++ +++L
Sbjct: 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 198 bits (505), Expect = 2e-58
Identities = 62/246 (25%), Positives = 92/246 (37%), Gaps = 38/246 (15%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
+ + A G L+ G + + + +PL EA GHL V+ LL GAQV+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLDF 612
T T L AC +G D +LLL +GA++ D ++ + EAA+ GH V L+ +
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123
Query: 613 PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQ 668
++ K T L ACEN LL GA++ + L A+ +
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELAC 183
Query: 669 LLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLL 728
LL+DF G AK G + +A L
Sbjct: 184 LLMDF-----GAD--------------------TQAKNAEGKRPVELVPPESP--LAQLF 216
Query: 729 LSYGAN 734
L
Sbjct: 217 LEREGP 222
Score = 195 bits (498), Expect = 2e-57
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 6/219 (2%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 43 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SD 100
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+P+ EAA G +E V LI +G +++ + S TPL AC A V+ LLE GA+V
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ + +PL A +A +L+++GA N + + L + L +
Sbjct: 161 -NQGKGQDSPLHAVARTASEELACLLMDFGADTQ-AKNAEGKRPVELVPPESPL--AQLF 216
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
L + H ++ KL+L +
Sbjct: 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 194 bits (495), Expect = 4e-57
Identities = 64/278 (23%), Positives = 100/278 (35%), Gaps = 41/278 (14%)
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR 466
S + A G+ + L++ V +PL EA G V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHL----SCVK---- 53
Query: 467 HDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 525
IL+ GA++N T + T L AC G D + LL++GA++
Sbjct: 54 -----------------ILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASV 95
Query: 526 ELGA--STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLS 583
+ + ++P+ EAA+ GH+E V L+ G + K T L ACEN LL
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 584 YGANL----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVA 639
GA++ + L A+ + LL+DF AK G + +A
Sbjct: 156 SGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LA 213
Query: 640 DLLLSYGAN-----LDNSTMLIEAAKGGHANVVQLLLD 672
L L L + H + +L+L
Sbjct: 214 QLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251
Score = 187 bits (478), Expect = 1e-54
Identities = 61/336 (18%), Positives = 98/336 (29%), Gaps = 85/336 (25%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+ +P+ EAA GH + L+ G +N S L AC GHL V+ LL GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTY 374
T + HT L A + G + L
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNL--------------------------------- 87
Query: 375 SRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 434
LL G SV +D S + A G+ E L+A N++
Sbjct: 88 ------------------LLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNID 128
Query: 435 DRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAH 494
+ TPL A + + ++ +L GA +N
Sbjct: 129 HKISHL-GTPLYLACENQQ--------------------RAC----VKKLLESGADVNQG 163
Query: 495 TEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDS 551
+ ++ L ++A L+ GA+ + + P+ E L + L+
Sbjct: 164 KGQ--DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLER 219
Query: 552 GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
H + L+L
Sbjct: 220 EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 185 bits (472), Expect = 7e-54
Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 40/277 (14%)
Query: 381 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 440
A G +++ L+++G +V+ T + S L AC G+ ++LL A V
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 441 ECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQ 499
TPL A SG + V+ +L+ GA + ++
Sbjct: 70 -HTPLFNACVSGSW----DCVN---------------------LLLQHGASVQPESDL-- 101
Query: 500 ETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
+ + A G ++ + L+ G NI+ S TPL A + V+ LL+SGA V+
Sbjct: 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 611
+ + D+ L ++A LL+ +GA+ + + + QL L+
Sbjct: 162 -QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLE 218
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
H + L+L
Sbjct: 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 180 bits (459), Expect = 5e-52
Identities = 59/287 (20%), Positives = 97/287 (33%), Gaps = 34/287 (11%)
Query: 31 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADP 90
S + A G+ + L++ V +PL EA G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-VSPLHEACLGGHLSCV--------- 52
Query: 91 EVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRSV 149
++L L A N + + L AC G V LL G SV
Sbjct: 53 KIL----------LKHGA-------QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 95
Query: 150 HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
+D S + A G+ E L+A N++ + TPL A + V+ L
Sbjct: 96 QPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHL-GTPLYLACENQQRACVKKL 153
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ GADVN Q ++PL E + +L++ GA+ + N G P+ +
Sbjct: 154 LESGADVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 212
Query: 270 GVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ 316
A++ LE + + + H + + +L Q
Sbjct: 213 --AQLFLEREGPPS-LMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256
Score = 178 bits (453), Expect = 4e-51
Identities = 65/303 (21%), Positives = 101/303 (33%), Gaps = 49/303 (16%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
S +P+ A GH+ +R L+ G V + +PL EA GH+ KILL++GA
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+N + L AC G D V LL GA + ++D + + EA+ GHVE
Sbjct: 62 VN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVNS 119
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
L+ G + H P L AC + VKKLL G V+
Sbjct: 120 LIAYGGN-IDHKISHLGTP-----------------LYLACENQQRACVKKLLESGADVN 161
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESV 461
+ +S L ELA +L+ A+ + + +G P+
Sbjct: 162 QGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEG-KRPVELVPP----------- 208
Query: 462 SAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKN 521
A + L + + + +L
Sbjct: 209 ---------------ESPLAQLFLEREGPPSLMQLC-RLRIRKCFGIQQHHKITKLVLPE 252
Query: 522 GAN 524
Sbjct: 253 DLK 255
Score = 127 bits (321), Expect = 5e-33
Identities = 55/276 (19%), Positives = 89/276 (32%), Gaps = 64/276 (23%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G + VK LL G V+ T + + L AC +G ++ +LL A+V+
Sbjct: 43 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE--SD 100
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
+P+ EAA G E + L + + + P
Sbjct: 101 LASPIHEAARRG------------HVECVNSLIA--------YGGNIDHKISHLGTP--- 137
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
L AC + VKKLL G A+V
Sbjct: 138 --LYLACENQQRACVKKLLESG---------------------------------ADVNQ 162
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
KG+ +PL A + E+ LL++ GAD +++ G P+ + ++ LE
Sbjct: 163 G--KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLE 218
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
H + K++L
Sbjct: 219 REGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 92.9 bits (232), Expect = 4e-21
Identities = 35/245 (14%), Positives = 62/245 (25%), Gaps = 66/245 (26%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G V LL G SV +D S + A G+ E L+A N++ +
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 134
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPL A + +++L L+ A + N + + +
Sbjct: 135 -GTPLYLACENQQ------------RACVKKL-------LESGA-------DVN-QGKGQ 166
Query: 125 RS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
S L + L+ G EG
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEG--------------------------- 199
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
P+ + +L + + H + +++L
Sbjct: 200 -------KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Query: 244 ECGAN 248
Sbjct: 251 PEDLK 255
Score = 61.3 bits (150), Expect = 2e-10
Identities = 17/113 (15%), Positives = 26/113 (23%), Gaps = 53/113 (46%)
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
+ + + A +GH L+S G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWA--------------------------------- 28
Query: 682 LSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V+ T + L AC GH +LL +GA
Sbjct: 29 --------------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 224 bits (574), Expect = 5e-68
Identities = 84/295 (28%), Positives = 130/295 (44%), Gaps = 33/295 (11%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA 214
E LL A +L Q LL ANV + +G TPL A +IV LL+ HGA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKI 274
D + +G TP + A G ++++ L GA+V + + G T MEAA G V K
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 275 LLEYGAGINTHSNEFKE---------SALTLACYKGHLDMVRFLLS-AGADQEHKTDEMH 324
L + GA +N ++ +AL A KGH+++++ LL GAD +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 325 TALMEASMDGHV----EVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQ 380
AL+ A + + LLLD GA N + ER T L+
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGAD-----------VNVRGER----GKT---PLIL 225
Query: 381 ACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 434
A + V++LL E +++T +G++ L LA ++A++L A+ +
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 205 bits (524), Expect = 7e-61
Identities = 74/343 (21%), Positives = 111/343 (32%), Gaps = 72/343 (20%)
Query: 223 GNTPLMYACAGGHEAVVRVLLECGANVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAG 281
N L+ A +V+ LLE GANV E G TPL A + ++LL +GA
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+ + LA G + +++ LS GAD TA MEA++ G V+ K
Sbjct: 65 PV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
L GA N + +
Sbjct: 124 LYKRGAN-----------VNLRRK------------------------------TKEDQE 142
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGRQCNLNES 460
G + L A G+ E+ ++LL A+V G L+ A S ++
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NALIHALLSSDDSDVEAI 201
Query: 461 VSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHTEETQETALTLACCGGFLDVADFLL 519
+L+ GA +N E +T L LA L + LL
Sbjct: 202 TH---------------------LLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLL 239
Query: 520 -KNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAK 558
+ I S T L+ A + ++ L GA
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 201 bits (514), Expect = 2e-59
Identities = 77/407 (18%), Positives = 113/407 (27%), Gaps = 137/407 (33%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+ L++A V + + LLE GA +N E + L A D+V LL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
GAD + T + A++ G V++ KL L GA
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD------------------------ 97
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
V+E G + A G + + L AN
Sbjct: 98 ---------------------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
Query: 433 VEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKIN 492
V N + + G
Sbjct: 131 V--------------------------------------NLRRKTKEDQERLRKGG---- 148
Query: 493 AHTEETQETALTLACCGGFLDVADFLL-KNGANIELGA---STPLMEAAQEGH----LEL 544
TAL A G ++V LL + GA++ L+ A +
Sbjct: 149 -------ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLS-YGANLDNSTMLIEAAKGGHA 603
LLD GA V+ + + G T L A E H + LL
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---------------- 245
Query: 604 NVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
++ G TAL A E +A+LL GA+ D
Sbjct: 246 ------------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 199 bits (509), Expect = 1e-58
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 18/234 (7%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A V+ LL G G + LA AG +L ++ L+ A+V + G
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVN----------GQSSSGNTPLMYACAGGHEAVV 239
T MEAA G ++ ++ L GA+VN G T LM A GH V+
Sbjct: 106 F-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164
Query: 240 RVLL-ECGANVEDHNENGHTPLMEAASAGHVG----VAKILLEYGAGINTHSNEFKESAL 294
++LL E GA+V + G L+ A + + +LL++GA +N E ++ L
Sbjct: 165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPL 223
Query: 295 TLACYKGHLDMVRFLLS-AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
LA K HL +V+ LL + + TAL+ A ++A+LL GA
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 194 bits (497), Expect = 5e-57
Identities = 81/355 (22%), Positives = 118/355 (33%), Gaps = 106/355 (29%)
Query: 406 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
E LL A +L Q LL ANV + +G TPL A R
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR------------ 51
Query: 466 RHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 524
+L+ GA + T LA G + + L GA+
Sbjct: 52 -------------EDIVELLLRHGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 525 IELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAK----------TQTGDTALTYACE 571
+ T MEAA G ++ +++L GA V+ + + G TAL A E
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 572 NGHTDVADLLLS-YGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYA 630
GH +V +LL GA+ V+A G AL +A
Sbjct: 158 KGHVEVLKILLDEMGAD----------------------------VNACDNMGRNALIHA 189
Query: 631 CENGHTD----VADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
+ + LLL +GA++ T LI A + H +VQ LL+
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE--------- 240
Query: 682 LSSPSDDSSSHLCSQGKKSG--VHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ ++ G TAL A E +A+LL GA+
Sbjct: 241 -----------------QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 187 bits (478), Expect = 2e-54
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 19/238 (7%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDR 185
L++A + DV V++LL G +V+ +E G + L A ++ ++LL A+ R
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
G TP + AA +G +++++L ++ GADVN G T M A G ++ L +
Sbjct: 69 KKNG-ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 246 GANVEDHNEN----------GHTPLMEAASAGHVGVAKILL-EYGAGINTHSNEFKESAL 294
GANV + G T LM+AA GHV V KILL E GA +N + +AL
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNAL 186
Query: 295 TLACYKGH----LDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS-GA 347
A + LL GAD + + T L+ A H+ + + LL+
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Score = 158 bits (401), Expect = 1e-43
Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 68/326 (20%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDR 60
L++A + DV V++LL G +V+ +E G + L A ++ ++LL A+ R
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKL-----ADPEVLRRLTSSVSCALDEAAAALTRMR 115
G TP + AA +G KL KL AD
Sbjct: 69 KKNG-ATPFLLAAIAGSVKLL----KLFLSKGADVNE----------------------C 101
Query: 116 NENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
+ + ++A G VK +K L G +V+
Sbjct: 102 DFY----GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK------------------- 138
Query: 176 LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH-GADVNGQSSSGNTPLMYACAGG 234
+ E G T LM+AA G +E++++L++ GADVN + G L++A
Sbjct: 139 ----EDQERLRKGG-ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 235 H----EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE-YGAGINTHSNEF 289
EA+ +LL+ GA+V E G TPL+ A H+G+ + LLE IN ++
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSD 252
Query: 290 KESALTLACYKGHLDMVRFLLSAGAD 315
++AL LA + L GA
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGAS 278
Score = 148 bits (377), Expect = 3e-40
Identities = 69/285 (24%), Positives = 104/285 (36%), Gaps = 56/285 (19%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A V+ LL G G + LA AG +L ++ L+ A+V + G
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
T MEAA G + L+ L R N N
Sbjct: 106 F-TAFMEAAVYGK------------VKALKFLYK----------------RGANV---NL 133
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH-ANVE 183
R + ++L G + L A G+ E+ ++LL A+V
Sbjct: 134 R-------RKTKEDQERLRKGGATA----------LMDAAEKGHVEVLKILLDEMGADVN 176
Query: 184 DRGIKGECTPLMEAASSG----FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
G L+ A S I LL++HGADVN + G TPL+ A H +V
Sbjct: 177 ACDNMGR-NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 240 RVLLE-CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGIN 283
+ LLE + D + +G T L+ A +A++L + GA +
Sbjct: 236 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 126 bits (319), Expect = 2e-32
Identities = 41/213 (19%), Positives = 62/213 (29%), Gaps = 84/213 (39%)
Query: 523 ANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKT-QTGDTALTYACENGHTDVADLL 581
A +E + L++A Q ++LV+ LL+ GA V+ + + G T L A + D+ +LL
Sbjct: 1 AAVE--DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 582 LSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADL 641
L +GA+ + + G T A G + L
Sbjct: 59 LRHGAD----------------------------PVLRKKNGATPFLLAAIAGSVKLLKL 90
Query: 642 LLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSG 701
LS GA+
Sbjct: 91 FLSKGAD----------------------------------------------------- 97
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V+ G TA A G L GAN
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 216 bits (552), Expect = 2e-65
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 1/222 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+V+A G + ++L+ G V + E +LL A +L + ++ A V+ G
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
TPL A G + +V L+ +GAD + G + + A GH ++V L+ G
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132
Query: 247 ANVEDHNENGHTPLMEAASAGH-VGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
+V+ ++NG TPLM AA H V ++LL + +N K +AL A G+ +
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ LL AGA+ + + + +AL A +V + L ++
Sbjct: 193 ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 192 bits (490), Expect = 1e-56
Identities = 56/260 (21%), Positives = 98/260 (37%), Gaps = 42/260 (16%)
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRY 547
+ ++ + A G + L++ G ++ T L AA ++LV+Y
Sbjct: 2 MTH-IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 548 LLDSGAQVHAKTQ-TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGG 601
+ GA V T L +A GH + L+ YGA+ + + + AA+ G
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
Query: 602 HANVVQLLLDFPRSVHAKTQTGDTALTYACENGHT-DVADLLLSYGANL------DNSTM 654
H ++V L+ + V Q G T L +A H+ D LLL++ ++ +T
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180
Query: 655 LIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALT 714
L A G+ V+ LLL G + V A+ G++AL
Sbjct: 181 LHWAVLAGNTTVISLLL-----------------------EAG--ANVDAQNIKGESALD 215
Query: 715 YACENGHTDVADLLLSYGAN 734
A + + + + L
Sbjct: 216 LAKQRKNVWMINHLQEARQA 235
Score = 189 bits (484), Expect = 9e-56
Identities = 59/257 (22%), Positives = 91/257 (35%), Gaps = 21/257 (8%)
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
++ +++A G E R L+ G DV T L +A +V+
Sbjct: 1 HMTHIDDYS-TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK 59
Query: 241 VLLECGANVED-HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACY 299
+ GA V+ + TPL A GH+ + L++YGA + E S + LA
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQ 118
Query: 300 KGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH-VEVAKLLLDSGAQSVSAYARHDF 358
GH +V +L++ G D + T LM A+ H V+ +LLL
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV----------- 167
Query: 359 FPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG 418
T +L A G+ + LL G +V +GES L LA
Sbjct: 168 ---SVNLGDKYHKNT---ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221
Query: 419 YYELAQVLLAMHANVED 435
+ L
Sbjct: 222 NVWMINHLQEARQAKGY 238
Score = 179 bits (458), Expect = 4e-52
Identities = 56/345 (16%), Positives = 100/345 (28%), Gaps = 115/345 (33%)
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
++ ++ +++A G + L+E G + E + L A +D+V+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVK 59
Query: 308 FLLSAGADQEHKT-DEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
+ +S GA + D T L A+ GH+ + L+ GA
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------------------ 101
Query: 367 PSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
EG S + LA G+ + L
Sbjct: 102 ---------------------------------PSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Query: 427 LAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI 486
+A +V+ G TPLM AA
Sbjct: 129 IAKGQDVDMMDQNGM-TPLMWAAYRT---------------------------------- 153
Query: 487 PGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE----LGASTPLMEAAQEGHL 542
H+ + LL ++ +T L A G+
Sbjct: 154 -------HSVDP----------------TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 543 ELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
++ LL++GA V A+ G++AL A + + + + L
Sbjct: 191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 175 bits (446), Expect = 2e-50
Identities = 61/258 (23%), Positives = 96/258 (37%), Gaps = 37/258 (14%)
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESV 461
D + A G YE + L+ +V + T L AA + R + V
Sbjct: 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKEN-VTLLHWAAINNRI----DLV 58
Query: 462 SAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLK 520
I GA ++ + T L A G L + L+K
Sbjct: 59 K---------------------YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 521 NGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHT-D 576
GA+ L + + AAQ GH +V YL+ G V Q G T L +A H+ D
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 577 VADLLLSYGANL------DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYA 630
LLL++ ++ +T L A G+ V+ LLL+ +V A+ G++AL A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Query: 631 CENGHTDVADLLLSYGAN 648
+ + + + L
Sbjct: 218 KQRKNVWMINHLQEARQA 235
Score = 167 bits (427), Expect = 1e-47
Identities = 54/239 (22%), Positives = 86/239 (35%), Gaps = 21/239 (8%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+ ++ A G R L+E G +V ++ T L AA + + K
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
+ GA ++ + + L A +GHL MV L+ GAD E + + A+ GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVK-TVKKLL 394
+ L+ G + + T L+ A + LL
Sbjct: 122 TSIVAYLIAKGQD-----------VDMMDQN----GMT---PLMWAAYRTHSVDPTRLLL 163
Query: 395 TEGRSVHETTD-EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
T SV+ + L A AG + +LL ANV+ + IKGE + L A
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRK 221
Score = 167 bits (426), Expect = 1e-47
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 5/193 (2%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETT-DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 188
A + + VK +++G V + D + L A G+ + L+ A+ +
Sbjct: 49 AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108
Query: 189 GECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEA-VVRVLLECGA 247
G C+ + AA G IV LI G DV+ +G TPLM+A H R+LL
Sbjct: 109 G-CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Query: 248 NVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
+V + +T L A AG+ V +LLE GA ++ N ESAL LA + ++ M+
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAKQRKNVWMI 226
Query: 307 RFLLSAGADQEHK 319
L A + +
Sbjct: 227 NHLQEARQAKGYD 239
Score = 134 bits (339), Expect = 1e-35
Identities = 60/286 (20%), Positives = 91/286 (31%), Gaps = 71/286 (24%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+V+A G + ++L+ G V + E +LL A +L + ++ A V+ G
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 62 IKGECTPLMEAASSGFGKLATGDGKL-----ADPEVLRRLTSSVSCALDEAAAALTRMRN 116
TPL A G + ADP + +
Sbjct: 73 GDLNSTPLHWATRQGHLSMV----VQLMKYGADPSL----------------------ID 106
Query: 117 ENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
+ A G V L+ +G+ V G
Sbjct: 107 GE----GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGM------------------- 143
Query: 177 AMHANVEDRGIKGECTPLMEAASSGF-IEIVRLLINHGADVNGQSSS-GNTPLMYACAGG 234
TPLM AA ++ RLL+ VN NT L +A G
Sbjct: 144 ---------------TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 235 HEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
+ V+ +LLE GANV+ N G + L A +V + L E
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234
Score = 78.2 bits (194), Expect = 2e-16
Identities = 42/221 (19%), Positives = 72/221 (32%), Gaps = 40/221 (18%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETT-DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
A + + VK +++G V + D + L A G+ + L+ A+ +
Sbjct: 49 AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108
Query: 64 GECTPLMEAASSGFGKLATGDGKL-----ADPEVLRRLTSSVSCALDEAAAALTRMRNEN 118
G C+ + AA G + D + M ++N
Sbjct: 109 G-CSCIHLAAQFGHTSIV----AYLIAKGQDVD----------------------MMDQN 141
Query: 119 PRPQNERSLVQACSDGDVK-TVKKLLTEGRSVHETTD-EGESLLSLACSAGYYELAQVLL 176
L+ A + LLT SV+ + L A AG + +LL
Sbjct: 142 ----GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 177 AMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
ANV+ + IKGE + L A + ++ L
Sbjct: 198 EAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKG 237
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 212 bits (543), Expect = 2e-62
Identities = 70/430 (16%), Positives = 128/430 (29%), Gaps = 109/430 (25%)
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
+ I L+EA+ G+I+ R + H P G++ +
Sbjct: 30 NHQSITSSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFN 80
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGH 302
+ L A+ G + + + I + L
Sbjct: 81 HTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASNSS 137
Query: 303 LDMVRFLL--------SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYA 354
+ L+ +AGAD + +T LM A + + L
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL------------ 185
Query: 355 RHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLA 414
+ G S L A
Sbjct: 186 ---------------------------------------MKAGADPTIYNKSERSALHQA 206
Query: 415 CSAGYYELAQVLL---AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
+ + + +L + ++E+ G T LM A + +
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALMIVAHNEGR----------------- 248
Query: 472 NDKSVNGLQASVILIP-GAKINAHTEETQE-------TALTLACCGGFLDVADFLL-KNG 522
+ + ++ +L+ GAK++ ++ TAL A + + +L+ + G
Sbjct: 249 -----DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 523 ANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVAD 579
+N + TP+M AAQEG +E+V YL+ GA V A T TA A N H ++ D
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363
Query: 580 LLLSYGANLD 589
+ +
Sbjct: 364 IFDRCRPERE 373
Score = 209 bits (533), Expect = 4e-61
Identities = 67/478 (14%), Positives = 120/478 (25%), Gaps = 141/478 (29%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
P ME + +S L+ A G+ R N
Sbjct: 18 MPPMENEEKN------------RKNHQSITSSQHSLLEASYDGYIKRQR-------NELQ 58
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
H P + G+ + L G + +
Sbjct: 59 HY--SLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEA-AGSYAITEPITR 114
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
+ T L + + E ++ L+ A
Sbjct: 115 ESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA------------------------ 149
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
K+ + G V+ + + L LA A L L+ A
Sbjct: 150 -------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI----P 487
+ + L +AA++ + ++
Sbjct: 191 DPTIYNKSE-RSALHQAAANRDF----GMMV---------------------YMLNSTKL 224
Query: 488 GAKINAHTEETQETALTLACCGGFLD---VADFLLKNGANIELGAS-----------TPL 533
I TAL + D A L++ GA ++ + T L
Sbjct: 225 KGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283
Query: 534 MEAAQEGHLELVRYLL-DSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNST 592
AAQ ++ +V+YL+ + G+ + + G T + A + G +V L+ GA+
Sbjct: 284 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----- 338
Query: 593 MLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
V A T TA A N H ++ D+ +
Sbjct: 339 -----------------------VEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 196 bits (501), Expect = 1e-56
Identities = 82/437 (18%), Positives = 134/437 (30%), Gaps = 107/437 (24%)
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
+L+EAS DG+++ + L +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY----------------------- 63
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
Q +G+ T + E E L +AG Y + + + N
Sbjct: 64 ----PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVN 118
Query: 433 VEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKIN 492
+ D + T L AS+ E H+ A + GA +N
Sbjct: 119 IIDP--RHNRTVLHWIASNSSA----EKSEDLIVHE------------AKECIAAGADVN 160
Query: 493 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLL 549
A + + T L LA + +L+K GA+ + + L +AA ++ Y+L
Sbjct: 161 A-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML 219
Query: 550 D---SGAQVHAKTQTGDTALTYACENGHTD---VADLLLSYGANLDNSTMLIEAAKGGHA 603
+ + + G TAL N D A LL+ GA +D
Sbjct: 220 NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG----------- 268
Query: 604 NVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLS-YGANL-----DNSTMLIE 657
++ G TAL YA + + + L+ G+N D T ++
Sbjct: 269 ---------AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Query: 658 AAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYAC 717
AA+ G VV L+ QG + V A T TA A
Sbjct: 320 AAQEGRIEVVMYLI-----------------------QQG--ASVEAVDATDHTARQLAQ 354
Query: 718 ENGHTDVADLLLSYGAN 734
N H ++ D+
Sbjct: 355 ANNHHNIVDIFDRCRPE 371
Score = 185 bits (471), Expect = 2e-52
Identities = 66/371 (17%), Positives = 120/371 (32%), Gaps = 62/371 (16%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
SL++A DG +K + +E G L +
Sbjct: 40 SLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
+ L A+ G + E + E+ N
Sbjct: 91 EPES-PIKLHTEAA--------GSYAIT--EPI----------TRESV-------NIIDP 122
Query: 121 PQNERSLVQACSDGDVKTVKKLLTE--------GRSVHETTDEGESLLSLACSAGYYELA 172
N L S+ + + L+ G V+ + + L LA A L
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182
Query: 173 QVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH---GADVNGQSSSGNTPLMY 229
L+ A+ + L +AA++ ++ ++N D+ +G T LM
Sbjct: 183 AYLMKAGADPTIYNKSE-RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241
Query: 230 ACAGGHE---AVVRVLLECGANV--------EDHNENGHTPLMEAASAGHVGVAKILL-E 277
A ++L+E GA V + G T L AA ++ + K L+ E
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301
Query: 278 YGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVE 337
G+ + +E ++ + LA +G +++V +L+ GA E HTA A + H
Sbjct: 302 KGSNKDK-QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360
Query: 338 VAKLLLDSGAQ 348
+ + +
Sbjct: 361 IVDIFDRCRPE 371
Score = 182 bits (464), Expect = 2e-51
Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 45/331 (13%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
Q +G+ T + E E L +AG Y + + + N+ D
Sbjct: 65 NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDP- 122
Query: 187 IKGECTPLMEAASSGFIEIVRLLINH--------GADVNGQSSSGNTPLMYACAGGHEAV 238
+ T L AS+ E LI H GADVN NTPLM A +
Sbjct: 123 -RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Query: 239 VRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLE---YGAGINTHSNEFKESALT 295
V L++ GA+ +N++ + L +AA+ G+ +L I + +AL
Sbjct: 182 VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALM 240
Query: 296 LACYKGHLDMV---RFLLSAGAD--------QEHKTDEMHTALMEASMDGHVEVAKLLL- 343
+ + D V + L+ GA ++ + + TAL A+ ++ + K L+
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Query: 344 DSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHET 403
+ G+ + + E T ++ A +G ++ V L+ +G SV
Sbjct: 301 EKGSN-----------KDKQDED----GKT---PIMLAAQEGRIEVVMYLIQQGASVEAV 342
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVE 434
+ LA + ++ + + E
Sbjct: 343 DATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 176 bits (448), Expect = 4e-49
Identities = 69/332 (20%), Positives = 120/332 (36%), Gaps = 39/332 (11%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
Q +G+ T + E E L +AG Y + + + N+ D
Sbjct: 65 NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDP- 122
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
+ T L AS+ E L + A A + N
Sbjct: 123 -RHNRTVLHWIASNS------------SAEKSEDLIVHEAKECIAAGA------DVNAMD 163
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL---A 177
+E + L+ A + V L+ G S L A + + + +L
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223
Query: 178 MHANVEDRGIKGECTPLMEAASSG---FIEIVRLLINHGADVNGQSSS--------GNTP 226
+ ++E+ G T LM A + + +LL+ GA V+ ++ G T
Sbjct: 224 LKGDIEELDRNGM-TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282
Query: 227 LMYACAGGHEAVVRVLL-ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTH 285
L YA + +V+ L+ E G+N + +E+G TP+M AA G + V L++ GA +
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA- 341
Query: 286 SNEFKESALTLACYKGHLDMVRFLLSAGADQE 317
+ +A LA H ++V ++E
Sbjct: 342 VDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 75.8 bits (187), Expect = 9e-15
Identities = 16/155 (10%), Positives = 38/155 (24%), Gaps = 41/155 (26%)
Query: 586 ANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ + L+EA+ G+ + L NG+ + D +
Sbjct: 33 SITSSQHSLLEASYDGYIKRQRNELQ---------HYSLYPNPQGYGNGNDFLGDFNHTN 83
Query: 646 GANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKS 700
++ L A G + + + +
Sbjct: 84 LQIPTEPEPESPIKLHTEAAG-SYAITEPIT-----------------------RESVNI 119
Query: 701 GVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ T L + N + ++ L+ + A
Sbjct: 120 ---IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 151
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 199 bits (509), Expect = 3e-59
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 3/219 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A G V L+ G ++ +++ + L A + E + L+ A V+ + +G
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 190 ECTPLMEAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGAN 248
T L AA G E+V+ L+++G DVN Q G TP+++A H +V++LL G++
Sbjct: 78 -STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRF 308
+ + + L AA +G V +A+ILL ++ N +S L +A + D V
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVL 195
Query: 309 LLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
LS +D K E T L AS++ V A + +
Sbjct: 196 FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 197 bits (503), Expect = 2e-58
Identities = 69/258 (26%), Positives = 109/258 (42%), Gaps = 40/258 (15%)
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRY 547
+ + + L A G +D+ L++ GANI+ + TPLMEAA+ HLE V+Y
Sbjct: 4 FKMEHQN-KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 548 LLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA------NLDNSTMLIEAAKGG 601
L+ +GA V K G T L A + GH +V LLS G + T +I A +
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 602 HANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLI 656
H ++V+LLL ++ + + L +A +G D+A++LL+ +L + L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 657 EAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYA 716
AA+ + V L L S+ S V K + G+T L A
Sbjct: 183 IAARENRYDCVVLFL-----------------------SRD--SDVTLKNKEGETPLQCA 217
Query: 717 CENGHTDVADLLLSYGAN 734
N A + +
Sbjct: 218 SLNSQVWSALQMSKALQD 235
Score = 191 bits (488), Expect = 2e-56
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Query: 149 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRL 208
S L A AG+ ++ +L+ AN++ TPLMEAA + +E V+
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKY 62
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVEDHNENGHTPLMEAASAG 267
LI GA V+ + + G+T L A GH VV+ LL G +V ++ G TP++ A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 268 HVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
HV + K+LL G+ IN + + L A + G +D+ LL+A D + L
Sbjct: 123 HVDLVKLLLSKGSDINI-RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 328 MEASMDGHVEVAKLLLDSGA 347
A+ + + L L +
Sbjct: 182 HIAARENRYDCVVLFLSRDS 201
Score = 191 bits (488), Expect = 2e-56
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 21/255 (8%)
Query: 179 HANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAV 238
H N + +PL AA +G ++I +L+ GA+++ S TPLM A H
Sbjct: 1 HMNFKMEHQNK-RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 239 VRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG-INTHSNEFKESALTLA 297
V+ L++ GA V+ + G T L AA GH V + LL G +N ++ + + A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWA 118
Query: 298 CYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHD 357
H+D+V+ LLS G+D + +E + L A+ G V++A++LL +
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD--------- 169
Query: 358 FFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSA 417
+ + + L A + V L+ V EGE+ L A
Sbjct: 170 --LHAV----NIHGDS---PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Query: 418 GYYELAQVLLAMHAN 432
A + +
Sbjct: 221 SQVWSALQMSKALQD 235
Score = 169 bits (431), Expect = 2e-48
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 37/259 (14%)
Query: 400 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNE 459
S L A AG+ ++ +L+ AN++ TPLMEAA +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNH------ 56
Query: 460 SVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFL 518
L+A LI GA ++ E T L LA G +V +L
Sbjct: 57 -------------------LEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYL 96
Query: 519 LKNGA-NIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
L NG ++ TP++ A + H++LV+ LL G+ ++ + + L +A +G
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 575 TDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTY 629
D+A++LL+ +L + L AA+ + V L L V K + G+T L
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216
Query: 630 ACENGHTDVADLLLSYGAN 648
A N A + +
Sbjct: 217 ASLNSQVWSALQMSKALQD 235
Score = 168 bits (429), Expect = 5e-48
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 3/188 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 188
A + ++ VK L+ G V EG + L LA G+YE+ Q LL+ +V +
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 189 GECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGAN 248
G TP++ A +++V+LL++ G+D+N + + N L +A G + +LL +
Sbjct: 111 GW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRF 308
+ N +G +PL AA + L + + N+ E+ L A +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT-LKNKEGETPLQCASLNSQVWSALQ 228
Query: 309 LLSAGADQ 316
+ A D
Sbjct: 229 MSKALQDS 236
Score = 160 bits (408), Expect = 4e-45
Identities = 67/306 (21%), Positives = 108/306 (35%), Gaps = 83/306 (27%)
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
++ K S L A GH+D+ L+ AGA+ + +++ T LMEA+ + H+E K L+ +G
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 347 AQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDE 406
A V E
Sbjct: 68 A---------------------------------------------------LVDPKDAE 76
Query: 407 GESLLSLACSAGYYELAQVLLAMHA-NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
G + L LA G+YE+ Q LL+ +V + G TP++ A + V
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHV----DLVK--- 128
Query: 466 RHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 524
+L+ G+ IN E + L A G +D+A+ LL +
Sbjct: 129 ------------------LLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCD 169
Query: 525 IELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
+ +PL AA+E + V L + V K + G+T L A N A +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Query: 582 LSYGAN 587
+
Sbjct: 230 SKALQD 235
Score = 151 bits (385), Expect = 6e-42
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 46/279 (16%)
Query: 247 ANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
N + ++N +PL AA AGHV + +L++ GA I+T +E + + L A HL+ V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAV 60
Query: 307 RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
++L+ AGA + K E T L A+ GH EV + LL +G V+ + P
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP------ 114
Query: 367 PSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
++ A V VK LL++G ++ +E L A +G ++A++L
Sbjct: 115 -----------MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Query: 427 LAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI 486
LA ++ I G+ +PL AA R + V + +
Sbjct: 164 LAAKCDLHAVNIHGD-SPLHIAARENRY----DCVV---------------------LFL 197
Query: 487 P-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGAN 524
+ + +E ET L A + A + K +
Sbjct: 198 SRDSDVTLKNKE-GETPLQCASLNSQVWSALQMSKALQD 235
Score = 148 bits (377), Expect = 8e-41
Identities = 57/259 (22%), Positives = 103/259 (39%), Gaps = 30/259 (11%)
Query: 24 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATG 83
S L A AG+ ++ +L+ AN++ TPLMEAA +
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENN------- 55
Query: 84 DGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKL 142
E ++ L + A +P+ + L A G + V+ L
Sbjct: 56 -----HLEAVKYL-------IKAGA-------LVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Query: 143 LTEGRS-VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 201
L+ G+ V+ D G + + A + +L ++LL+ +++ R + L AA SG
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSG 155
Query: 202 FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLM 261
++I +L+ D++ + G++PL A V + L ++V N+ G TPL
Sbjct: 156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Query: 262 EAASAGHVGVAKILLEYGA 280
A+ V A + +
Sbjct: 216 CASLNSQVWSALQMSKALQ 234
Score = 141 bits (359), Expect = 2e-38
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 36/192 (18%)
Query: 555 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 609
+ Q + L A E GH D+ +L+ GAN+ D T L+EAA+ H V+ L
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA------NLDNSTMLIEAAKGGH 663
+ V K G T L A + GH +V LLS G + T +I A + H
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 664 ANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTD 723
++V+LLL S+G S ++ + + L +A +G D
Sbjct: 124 VDLVKLLL-----------------------SKG--SDINIRDNEENICLHWAAFSGCVD 158
Query: 724 VADLLLSYGANL 735
+A++LL+ +L
Sbjct: 159 IAEILLAAKCDL 170
Score = 89.0 bits (222), Expect = 5e-20
Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 71/250 (28%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 63
A + ++ VK L+ G V EG + L LA G+YE+ Q LL+ +V +
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 64 GECTPLMEAASSGFGKLATGDGKL-----ADPEVLRRLTSSVSCALDEAAAALTRMRNEN 118
G TP++ A L KL +D + R+
Sbjct: 111 GW-TPMIWATEYKHVDLV----KLLLSKGSDINI----------------------RDNE 143
Query: 119 PRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 178
L A G V + LL +H G+
Sbjct: 144 ----ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD--------------------- 178
Query: 179 HANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAV 238
+PL AA + V L ++ +DV ++ G TPL A
Sbjct: 179 -------------SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225
Query: 239 VRVLLECGAN 248
+ + +
Sbjct: 226 ALQMSKALQD 235
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 200 bits (510), Expect = 6e-59
Identities = 47/297 (15%), Positives = 92/297 (30%), Gaps = 35/297 (11%)
Query: 128 VQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGI 187
+ + K +K L + + G S A + L LL A +
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN---L 59
Query: 188 KGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
PL +AA+ +IV++L+ G D + GNT L YA G+ V++ ++
Sbjct: 60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 248 NVEDHNENG-HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
+ + + G T A V + L +T S + + GH+DM+
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMM 177
Query: 307 RFLLSAGADQEHKTDEMHT-ALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCE 365
LL + + A + +E+ + L
Sbjct: 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-----------IYSA-- 224
Query: 366 RPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYEL 422
++ D + K ++ + + + L + + E+
Sbjct: 225 ------------NLENVLLDDAEIAKMIIEKHVEYKSDSYTKD--LDIVKNNKLDEI 267
Score = 196 bits (500), Expect = 2e-57
Identities = 41/288 (14%), Positives = 97/288 (33%), Gaps = 29/288 (10%)
Query: 162 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSS 221
L+ + + + G + A + + +V L+N GA N
Sbjct: 4 LSRINTWKSKQLKSFLSSKDTFKADVHG-HSASYYAIADNNVRLVCTLLNAGALKNLLE- 61
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
PL A +V++LL G + ++ G+T L A +G++ K+ ++
Sbjct: 62 -NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+ + +++ A + +V + LS + + + +GHV++ L
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMIL 179
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
LLD + F P + A + D++ ++ L +++
Sbjct: 180 LLDYMTS-TNTNNSLLFIP----------------DIKLAIDNKDIEMLQALFKYDINIY 222
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 449
E+A++++ H + + +++
Sbjct: 223 SA-------NLENVLLDDAEIAKMIIEKHVEYKSDSYTKD-LDIVKNN 262
Score = 191 bits (489), Expect = 7e-56
Identities = 42/268 (15%), Positives = 75/268 (27%), Gaps = 47/268 (17%)
Query: 485 LIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI-ELGASTPLMEAAQEGHLE 543
+ +A A + + LL GA L PL +AA +
Sbjct: 18 FLSSKDTFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK 76
Query: 544 LVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD------NSTMLIEA 597
+V+ LL SG G+TAL YA ++G+ L + L T A
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136
Query: 598 AKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD------N 651
++V L + + +NGH D+ LLL Y + +
Sbjct: 137 VMLNDVSIVSYFLSE-IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195
Query: 652 STMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDT 711
+ A ++Q L +
Sbjct: 196 IPDIKLAIDNKDIEMLQALF-----------------------KYD------IN---IYS 223
Query: 712 ALTYACENGHTDVADLLLSYGANLRNRT 739
A ++A +++ ++ +
Sbjct: 224 ANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Score = 176 bits (449), Expect = 3e-50
Identities = 49/362 (13%), Positives = 92/362 (25%), Gaps = 92/362 (25%)
Query: 379 VQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGI 438
+ + K +K L + + G S A + L LL A +
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN---L 59
Query: 439 KGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEE 497
PL +AA+ + V IL+ G + ++
Sbjct: 60 LENEFPLHQAATLEDT----KIVK---------------------ILLFSGLDDSQFDDK 94
Query: 498 TQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGHLELVRYLLDSGA 553
TAL A G + +K + G T A + +V Y L
Sbjct: 95 -GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153
Query: 554 QVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFP 613
+ + +NGH D+ LLL Y +
Sbjct: 154 -STFDLAILLSCIHITIKNGHVDMMILLLDYMTS-------------------------- 186
Query: 614 RSVHAKTQTGDT-ALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 672
+ + A +N ++ L Y N+ + +E A + +++++
Sbjct: 187 --TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--SANLENVLLDDAEIAKMIIE 242
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYG 732
K + + T D + + + L
Sbjct: 243 -------------------------KHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM 277
Query: 733 AN 734
Sbjct: 278 YV 279
Score = 170 bits (433), Expect = 4e-48
Identities = 34/210 (16%), Positives = 75/210 (35%), Gaps = 10/210 (4%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
NE L QA + D K VK LL G + D+G + L A +G + ++ + + +
Sbjct: 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
G G T A + IV ++ + + + GH ++ +L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILL 180
Query: 243 LECGANVEDHNENGHTP-LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
L+ + +N P + A + + + L +Y I + A
Sbjct: 181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS--------ANLENVLLD 232
Query: 302 HLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
++ + ++ + + + +++ +
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Score = 168 bits (427), Expect = 3e-47
Identities = 42/393 (10%), Positives = 88/393 (22%), Gaps = 121/393 (30%)
Query: 197 AASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENG 256
++ + ++ ++ D G++ YA A + +V LL GA
Sbjct: 6 RINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LEN 62
Query: 257 HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ 316
PL +AA+ + KILL G + ++ +AL A G++ V+ +
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 317 EHKT-DEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYS 375
T+ A M V + L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP---------------------------- 153
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
S + + G+ ++ +LL +
Sbjct: 154 ------------------------STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAH 494
+ A + E + L I
Sbjct: 190 NNSLLFIPDIKLAIDNKDI----EMLQ---------------------ALFKYDINIY-- 222
Query: 495 TEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 554
+A E+ + +++ +
Sbjct: 223 ------SANLENVLLD------------------------------DAEIAKMIIEKHVE 246
Query: 555 VHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
+ + T D + + + L
Sbjct: 247 YKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
Score = 160 bits (408), Expect = 1e-44
Identities = 46/395 (11%), Positives = 98/395 (24%), Gaps = 118/395 (29%)
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
G + K L ++ SA A ++ +V LL+AGA
Sbjct: 1 GMDLS--RINTWKSKQLKSFLS-SKDTFK-ADVHGHSASYYAIADNNVRLVCTLLNAGAL 56
Query: 316 QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYS 375
+ +E L +A+ ++ K+LL SG
Sbjct: 57 KNLLENE--FPLHQAATLEDTKIVKILLFSGL---------------------------- 86
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
+ D+G + L A +G + ++ + + +
Sbjct: 87 -----------------------DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAH 494
G G T A VS +
Sbjct: 124 YGKTGWKTSFYHAVMLNDV----SIVS---------------------YFLSEIPSTFDL 158
Query: 495 TEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQ 554
+ + + + GH++++ LLD
Sbjct: 159 AIL--LSCIHIT------------------------------IKNGHVDMMILLLDYMTS 186
Query: 555 VHAKTQTGDT-ALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFP 613
+ + A +N ++ L Y N+ + +E A + +++++
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY--SANLENVLLDDAEIAKMIIEKH 244
Query: 614 RSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
+ + T D + + + L
Sbjct: 245 VEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279
Score = 124 bits (315), Expect = 6e-32
Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 35/276 (12%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +D +V+ V LL G + E L A + ++ ++LL + KG
Sbjct: 38 AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
T L A SG + ++ + + + +
Sbjct: 96 N-TALYYAVDSGNMQTV---------KLF----------VKKNWRLMFYGKTGWKTS--- 132
Query: 125 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
A DV V L+E S + S + + G+ ++ +LL +
Sbjct: 133 --FYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVDMMILLLDYMTSTNT 189
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ A + IE+++ L + ++ + + + ++++E
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIE 242
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
+ + +++ + L
Sbjct: 243 KHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278
Score = 45.6 bits (109), Expect = 3e-05
Identities = 24/220 (10%), Positives = 65/220 (29%), Gaps = 43/220 (19%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEG-ESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
A G+++TVK + + + G ++ A + L+ + D
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--A 159
Query: 64 GECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
+ + +G +++ L LD + N
Sbjct: 160 ILLSCIHITIKNGH------------VDMMILL-------LDYMT-------STNTNNSL 193
Query: 124 ER--SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ A + D++ ++ L +++ E+A++++ H
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSA-------NLENVLLDDAEIAKMIIEKHVE 246
Query: 182 VEDRGIKGECTPLMEAASSGFI----EIVRLLINHGADVN 217
+ + +++ I + +RL+ + N
Sbjct: 247 YKSDSYTKD-LDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 190 bits (486), Expect = 5e-57
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+ + A+ G + + I +N G TPLM+A A G AVV LL+ GA+ +
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ + L A S G+ + K+LL+ G +N + + L A + H+ V+ LL
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+GAD +TD + ++ A G+ V +++
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 176 bits (448), Expect = 1e-51
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQ 219
+ + G + + +G TPLM AA+ G I +V L+ +GAD
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEG-FTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
+ L AC+ G+ +V++LL+CG +V +++ NG TPL+ A HV K+LLE G
Sbjct: 66 GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125
Query: 280 AGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDE 322
A + +++ LA G+ + + + S E
Sbjct: 126 ADPT-IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 166 bits (423), Expect = 4e-48
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
++ G + ++ I TPLM AA G + +V +LL +GA
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 611
+ ++AL+ AC G+TD+ +LL G ++ + T L+ A G H V++LL+
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
+T +G ++ A G+ V ++ S+ L
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 164 bits (418), Expect = 2e-47
Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 58/211 (27%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
S + + A +G + + ++ ++ + G T L +A +G V + LL GA+
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-- 61
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 649
+ ++AL+ AC G+TD+ +LL G ++
Sbjct: 62 --------------------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95
Query: 650 -----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHA 704
+ T L+ A G H V++LL+ +
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLE-------------------------SGADPTI 130
Query: 705 KTQTGDTALTYACENGHTDVADLLLSYGANL 735
+T +G ++ A G+ V ++ S+ L
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 159 bits (405), Expect = 1e-45
Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 1/163 (0%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
S+ Q + G++ + + + ++ T +EG + L A + G + + LL A+ +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
G + L A S G+ +IV++L++ G DVN +G TPL+YA G H V++LLE
Sbjct: 66 GKGR-ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNE 288
GA+ ++G+ + A + G+ V +++ + + + E
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 151 bits (385), Expect = 6e-43
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+ + + A G + +E + +E G TPLM AA+ G + V + LL+ GA
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+ESAL+LAC KG+ D+V+ LL G D T L+ A HV+ K+
Sbjct: 62 PQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 342 LLDSGA 347
LL+SGA
Sbjct: 121 LLESGA 126
Score = 134 bits (340), Expect = 1e-36
Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 31/183 (16%)
Query: 411 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFF 470
+ + G + + +G TPLM AA+ G+ V
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEG-FTPLMWAAAHGQI----AVVE-------- 53
Query: 471 PNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA 529
L+ GA + +E+AL+LAC G+ D+ LL G ++
Sbjct: 54 -------------FLLQNGADPQLLGKG-RESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 530 S---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
TPL+ A H++ V+ LL+SGA +T +G ++ A G+ V ++ S+
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Query: 587 NLD 589
L
Sbjct: 160 KLL 162
Score = 112 bits (284), Expect = 3e-29
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
NS + + A G + ++ ++ + G T L +A +G V + LL GA+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVH 703
+ L A G+ ++V++LLD V+
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLD-------------------------CGVDVN 96
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGAN 734
G T L YA H +LL GA+
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 101 bits (255), Expect = 3e-25
Identities = 38/268 (14%), Positives = 67/268 (25%), Gaps = 107/268 (39%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
++ +G + + + H +E T LM A+ G + V + LL +GA
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----- 60
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
ES LS
Sbjct: 61 ----------------------------------------------DPQLLGKGRESALS 74
Query: 413 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPN 472
LACS GY ++ ++LL +V + G TPL+ A
Sbjct: 75 LACSKGYTDIVKMLLDCGVDVNEYDWNG-GTPLLYAVHGNH------------------- 114
Query: 473 DKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTP 532
++L GA T +G
Sbjct: 115 -VKC----VKMLLESGADPTIET------------------------DSG-------YNS 138
Query: 533 LMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
+ A G+ + + + ++ +
Sbjct: 139 MDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 70.9 bits (175), Expect = 2e-14
Identities = 37/218 (16%), Positives = 71/218 (32%), Gaps = 62/218 (28%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
S+ Q + G++ + + + ++ T +EG + L A + G + + LL A+ +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G + L A S G+ ++++ L LD + N
Sbjct: 66 GKGR-ESALSLACSKGY------------TDIVKML-------LDCGV-------DVNEY 98
Query: 121 PQNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
N + L+ A VK VK LL G TD G
Sbjct: 99 DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY---------------------- 136
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
+ A + G+ + +++ +H +
Sbjct: 137 ------------NSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 41.2 bits (98), Expect = 2e-04
Identities = 1/27 (3%), Positives = 5/27 (18%)
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
++ G + +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVI 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 194 bits (496), Expect = 1e-56
Identities = 68/376 (18%), Positives = 119/376 (31%), Gaps = 90/376 (23%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+ + G E + + + ++G + A S+G L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
LE GA IN +N +AL AC ++DMV+FL+ GA+ +E L A+ G+
Sbjct: 60 LERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLT 395
+++A+ L+ GA
Sbjct: 119 LDIAEYLISQGA------------------------------------------------ 130
Query: 396 EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGRQ 454
V EG++ L +A EL Q + ++E E +
Sbjct: 131 ---HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEE----R 175
Query: 455 CNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDV 514
L ++ H + + TAL +A G+ +V
Sbjct: 176 IMLRDARQWLNSG--------------------HINDVRHAK-SGGTALHVAAAKGYTEV 214
Query: 515 ADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACE 571
L++ ++ + TPL AA G E R L+++ + A + G TA A E
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274
Query: 572 NGHTDVADLLLSYGAN 587
+ + +L
Sbjct: 275 DILGYLEELQKKQNLL 290
Score = 189 bits (483), Expect = 6e-55
Identities = 62/315 (19%), Positives = 117/315 (37%), Gaps = 27/315 (8%)
Query: 122 QNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ +R+ G ++ + + + D+G L ACS+G E LL A+
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGAD 65
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRV 241
+ + G T L +A +++V+ L+ +GA++N + G PL A + G+ +
Sbjct: 66 INYANVDG-LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Query: 242 LLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
L+ GA+V N G TPL A + + + G++ E+A
Sbjct: 125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-GVD------IEAARKEEERIM 177
Query: 302 HLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPN 361
D ++L S + TAL A+ G+ EV KLL+ + V+ + P
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DVNIKDYDGWTP- 235
Query: 362 DKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYE 421
L A G + + L+ + G++ +A
Sbjct: 236 ----------------LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY 279
Query: 422 LAQVLLAMHANVEDR 436
L ++ + ++
Sbjct: 280 LEELQKKQNLLHSEK 294
Score = 189 bits (483), Expect = 8e-55
Identities = 74/337 (21%), Positives = 115/337 (34%), Gaps = 61/337 (18%)
Query: 406 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
+ + L G + + + + G + A SSG
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSG------------- 51
Query: 466 RHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 525
D +L GA IN + TAL AC +D+ FL++NGANI
Sbjct: 52 -------DTEE----VLRLLERGADINYANVD-GLTALHQACIDDNVDMVKFLVENGANI 99
Query: 526 ELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLL 582
+ PL AA G+L++ YL+ GA V A GDT L A E ++ +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159
Query: 583 SYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
+ D E + + Q L + ++G TAL A G+T+V LL
Sbjct: 160 NRQGV-DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 643 LSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQG 697
+ ++ D T L AA G ++L+ +LC
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-------------------ENLCD-- 257
Query: 698 KKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ A + G TA A E+ + +L
Sbjct: 258 ----MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 187 bits (478), Expect = 3e-54
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 8/233 (3%)
Query: 116 NENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
+ + + ACS GD + V +LL G ++ +G + L AC ++ + L
Sbjct: 33 KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92
Query: 176 LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGH 235
+ AN+ +G PL AAS G+++I LI+ GA V +S G+TPL A
Sbjct: 93 VENGANINQPDNEG-WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151
Query: 236 EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALT 295
E +++ + + E + L H+ +AL
Sbjct: 152 EELLQNEVN------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS-GGTALH 204
Query: 296 LACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
+A KG+ ++++ L+ A D K + T L A+ G E ++L+++
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Score = 183 bits (467), Expect = 1e-52
Identities = 61/300 (20%), Positives = 111/300 (37%), Gaps = 30/300 (10%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGA 214
+ + L G + + + + G + A SSG E V L+ GA
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSGDTEEVLRLLERGA 64
Query: 215 DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKI 274
D+N + G T L AC + +V+ L+E GAN+ + G PL AAS G++ +A+
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Query: 275 LLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS-AGADQEHKTDEMHTALMEASMD 333
L+ GA + N ++ L +A + ++++ ++ G D + A E
Sbjct: 125 LISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVD-------IEAARKEEERI 176
Query: 334 GHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKL 393
+ + L +A+ L A + G + +K L
Sbjct: 177 MLRDARQWLNSGHIN-DVRHAKSGGTA-----------------LHVAAAKGYTEVLKLL 218
Query: 394 LTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGR 453
+ V+ +G + L A G E ++L+ ++E G+ T A
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ-TAFDVADEDIL 277
Score = 182 bits (465), Expect = 3e-52
Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 46/261 (17%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
K ++ AC G + LL+ GA+I T L +A + ++++
Sbjct: 31 RKKTKVKFDD--GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAK 599
V++L+++GA ++ G L A G+ D+A+ L+S GA++ + T L A +
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148
Query: 600 GGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTM 654
++Q ++ + + A D L S N T
Sbjct: 149 EAMEELLQNEVN------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202
Query: 655 LIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALT 714
L AA G+ V++LL+ V+ K G T L
Sbjct: 203 LHVAAAKGYTEVLKLLI-----------------------QAR--YDVNIKDYDGWTPLH 237
Query: 715 YACENGHTDVADLLLSYGANL 735
A G + +L+ ++
Sbjct: 238 AAAHWGKEEACRILVENLCDM 258
Score = 181 bits (463), Expect = 5e-52
Identities = 65/399 (16%), Positives = 118/399 (29%), Gaps = 116/399 (29%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+ G + + ++ + AC G + V LL
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD--GAVFLAACSSGDTEEVLRLLER 62
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
GAD + + TAL +A +D +V++ K L+++GA
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGA------------------------- 97
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
++++ +EG L A S GY ++A+ L++ A+
Sbjct: 98 --------------------------NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131
Query: 433 VEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKIN 492
V +G+ TPL A ++ + + G I
Sbjct: 132 VGAVNSEGD-TPLDIAEEEA-------------------MEELLQNE----VNRQGVDIE 167
Query: 493 AHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLL 549
A D +L N A T L AA +G+ E+++ L+
Sbjct: 168 --------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 550 DSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLL 609
+ V+ K G T L A G + +L+ +++
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-------------------- 259
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
A + G TA A E+ + +L
Sbjct: 260 --------AVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 176 bits (448), Expect = 5e-50
Identities = 62/372 (16%), Positives = 102/372 (27%), Gaps = 88/372 (23%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
G + + + G + AC+ G V LLE GA++
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINY 68
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
N +G T L +A +V + K L+E GA IN + L A G+LD+ +L+S
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLIS 127
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
GA E T L A + E+
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEEL--------------------------------- 154
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
++ + + E+ + Q L + H
Sbjct: 155 ------------------LQNEVNRQG------VDIEAARKEEERIMLRDARQWLNSGHI 190
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
N G T L AA+ G V +++ +
Sbjct: 191 NDVRHAKSGG-TALHVAAAKGY--------------------TEV----LKLLIQARYDV 225
Query: 492 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYL 548
N + T L A G + L++N ++E T A ++ L
Sbjct: 226 NIKDYD-GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
Query: 549 LDSGAQVHAKTQ 560
K +
Sbjct: 285 KKQNLLHSEKRE 296
Score = 165 bits (420), Expect = 5e-46
Identities = 68/322 (21%), Positives = 113/322 (35%), Gaps = 43/322 (13%)
Query: 30 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD 89
+ + L G + + + + G + A SSG D
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG--AVFLAACSSG------------D 52
Query: 90 PEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNER---SLVQACSDGDVKTVKKLLTEG 146
E + RL R + N +L QAC D +V VK L+ G
Sbjct: 53 TEEVLRLLE----------------RGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96
Query: 147 RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIV 206
++++ +EG L A S GY ++A+ L++ A+V +G+ TPL A E++
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELL 155
Query: 207 RLLIN-HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAAS 265
+ +N G D + L N H ++G T L AA+
Sbjct: 156 QNEVNRQGVD-------IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208
Query: 266 AGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHT 325
G+ V K+L++ +N + + L A + G + R L+ D E T
Sbjct: 209 KGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267
Query: 326 ALMEASMDGHVEVAKLLLDSGA 347
A A D + +L
Sbjct: 268 AFDVADEDILGYLEELQKKQNL 289
Score = 153 bits (389), Expect = 9e-42
Identities = 60/323 (18%), Positives = 112/323 (34%), Gaps = 39/323 (12%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
G ++ + + + D+G L ACS+G E LL A++
Sbjct: 12 EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGADINYAN 70
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
+ G T L +A ++++ L ++ A N N
Sbjct: 71 VDG-LTALHQACIDDN------------VDMVKFL-------VENGA-------NINQPD 103
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH- 179
L A S G + + L+++G V EG++ L +A EL Q +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
++E E + + L + + + SG T L A A G+ V+
Sbjct: 164 VDIE--------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACY 299
++L++ +V + +G TPL AA G +IL+E + + ++A +A
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV-GQTAFDVADE 274
Query: 300 KGHLDMVRFLLSAGADQEHKTDE 322
+ K ++
Sbjct: 275 DILGYLEELQKKQNLLHSEKREK 297
Score = 107 bits (269), Expect = 8e-26
Identities = 33/205 (16%), Positives = 53/205 (25%), Gaps = 82/205 (40%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
G + + + K G L AC +G T+ LL GA+
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGAD--- 65
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
++ G TAL AC + + D+ L+ GAN
Sbjct: 66 -------------------------INYANVDGLTALHQACIDDNVDMVKFLVENGAN-- 98
Query: 651 NSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGD 710
++ G
Sbjct: 99 ---------------------------------------------------INQPDNEGW 107
Query: 711 TALTYACENGHTDVADLLLSYGANL 735
L A G+ D+A+ L+S GA++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHV 132
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 188 bits (481), Expect = 3e-56
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 189 GECTPLMEAASSGFIEIVRLLINHGAD-VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
G+ + + A+ G ++ ++ + G + VN G TPL++A A G VR LLE GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+ + + L A++ G+ + +LLE IN + + L A H+ V
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVKCVE 119
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
LL+ GAD + D +T + A G+ +V +++ +
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 176 bits (450), Expect = 8e-52
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQ 219
+ + G + + L N+ ++ + TPL+ A++ G IE VR L+ GAD +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
+ + L A GG+ +V +LLE ++ ++ NG TPL+ A HV + LL G
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 280 AGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHT 325
A + T + + + LA G+ + + + +
Sbjct: 126 ADLTT-EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 165 bits (420), Expect = 1e-47
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 501 TALTLACCGGFLDVADFLLKNGANIELGA----STPLMEAAQEGHLELVRYLLDSGAQVH 556
++ G LD L+ G N+ TPL+ A+ G +E VR+LL+ GA H
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 611
+ ++AL+ A G+TD+ LLL ++ + T L+ A +G H V+ LL
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
+ + +G T + A G+ V ++ ++ L
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162
Score = 161 bits (411), Expect = 2e-46
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 59/214 (27%)
Query: 528 GASTPLMEAAQEGHLELVRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
G S + + A +G L+ ++ L G V+ + G T L +A G + LL +GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 587 NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ H + ++AL+ A G+TD+ LLL
Sbjct: 61 D----------------------------PHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 647 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSG 701
++ + T L+ A +G H V+ LL + +
Sbjct: 93 VDINIYDWNGGTPLLYAVRGNHVKCVEALLA-------------------------RGAD 127
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ + +G T + A G+ V ++ ++ L
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 156 bits (396), Expect = 3e-44
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGR-SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
S+ Q + G++ +K+ L +G V++ + G + L A + G E + LL A+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ E + L A++ G+ +IV LL+ D+N +G TPL+YA G H V LL
Sbjct: 65 LAKERE-SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNE 288
GA++ ++G+TP+ A + G+ V +++ + + +
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Score = 151 bits (385), Expect = 8e-43
Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 54/223 (24%)
Query: 223 GNTPLMYACAGGHEAVVRVLLECGANVEDH-NENGHTPLMEAASAGHVGVAKILLEYGAG 281
+ + A G ++ L G N+ + +E G TPL+ A++ G + + LLE+GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+ + E +ESAL+LA G+ D+V LL D T L+ A HV+ +
Sbjct: 62 PHILAKE-RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
LL GA +
Sbjct: 121 LLARGA---------------------------------------------------DLT 129
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
D G + + LA + GY ++ QV+ + + P
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA-DP 171
Score = 134 bits (341), Expect = 9e-37
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 411 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFF 470
+ + G + + L N+ ++ + TPL+ A++ G E+V
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEI----ETVR-------- 53
Query: 471 PNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA 529
L+ GA + +E +E+AL+LA GG+ D+ LL+ +I +
Sbjct: 54 -------------FLLEWGADPHILAKE-RESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 530 ---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
TPL+ A + H++ V LL GA + + +G T + A G+ V ++ ++
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 587 NLD 589
L
Sbjct: 160 KLF 162
Score = 129 bits (328), Expect = 5e-35
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 64 GECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
G+ + + A+ G + + L+ L + + + P
Sbjct: 1 GDSLSIHQLAAQG------------ELDQLKEH-------LRKGDNLVNKPDERGFTP-- 39
Query: 124 ERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
L+ A + G+++TV+ LL G H E ES LSLA + GY ++ +LL ++
Sbjct: 40 ---LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
G TPL+ A ++ V L+ GAD+ ++ SG TP+ A A G+ V +V+
Sbjct: 97 IYDWNG-GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 244 ECGANVEDHNENGHTP 259
+ N P
Sbjct: 156 NHILKLFQSNLVPADP 171
Score = 113 bits (285), Expect = 4e-29
Identities = 43/274 (15%), Positives = 75/274 (27%), Gaps = 110/274 (40%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEM-HTALMEASMDGHVEVAKLLLDSGAQSVS 351
++ +G LD ++ L G + +K DE T L+ AS G +E + LL+ GA
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--- 61
Query: 352 AYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLL 411
H E ES L
Sbjct: 62 ------------------------------------------------PHILAKERESAL 73
Query: 412 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
SLA + GY ++ +LL ++ G TPL+ A
Sbjct: 74 SLASTGGYTDIVGLLLERDVDINIYDWNG-GTPLLYAVRGNH------------------ 114
Query: 472 NDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS 530
++ L+ GA + +G
Sbjct: 115 -------VKCVEALLARGADLTTEA------------------------DSG-------Y 136
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
TP+ A G+ ++ + + + ++
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 77.1 bits (191), Expect = 1e-16
Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 63/228 (27%)
Query: 1 SLVQACSDGDVKTVKKLLTEGR-SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 59
S+ Q + G++ +K+ L +G V++ + G + L A + G E + LL A+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 60 RGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
+ E + L A++ G+ +++ L L+ + N
Sbjct: 65 LAKERE-SALSLASTGGY------------TDIVGLL-------LERDV-------DINI 97
Query: 120 RPQNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 178
N L+ A VK V+ LL G + D G
Sbjct: 98 YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG---------------------- 135
Query: 179 HANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTP 226
TP+ A + G+ ++ +++ NH + + P
Sbjct: 136 ------------YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 41.2 bits (98), Expect = 3e-04
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 709 GDTALTYACENGHTDVADLLLSYGANLRNRT 739
++ G D L G NL N+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 188 bits (480), Expect = 9e-56
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 9/198 (4%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
T E +LL A ++ ++L V++ +G TPL A + IEI + LI+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNNDIEIAKALIDR 61
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVEDHNENGHTPLMEAASAGHVGV 271
GAD+N Q+S ++P +YA A G ++ +L+ ++ HN G L+ AA GH+
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 272 AKILLEYG-AGINTHSNEFKESALTLAC-----YKGHLDMVRFLLSAGADQEHKTDEMHT 325
K+LLE G I+ N+F +AL A + + D+V+ L+ GADQ K + T
Sbjct: 122 VKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180
Query: 326 ALMEASMDGHVEVAKLLL 343
A+ A+ G+ E++K+L
Sbjct: 181 AMDYANQKGYTEISKILA 198
Score = 171 bits (436), Expect = 2e-49
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 188 KGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
L A ++ +L + V+ + GNTPL A + + L++ GA
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
++ N +P + A + G + +L++ N + +AL A KGH+D V+
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 308 FLLSAG-ADQEHKTDEMHTALMEASM-----DGHVEVAKLLLDSGA 347
LL G D + + D +TAL+EA + ++ KLL+++GA
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 162 bits (413), Expect = 2e-46
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 20/192 (10%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
L A V + L ++ + TPL A +E+ + L+D GA ++
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGA------NLDNSTMLIEAAKGGHANVVQLLL 610
+ D+ YA G T++ +L + N LI AA+ GH + V+LLL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 611 DFPRS-VHAKTQTGDTALTYAC-----ENGHTDVADLLLSYGANL-----DNSTMLIEAA 659
+ R + + G TAL A + D+ LL+ GA+ T + A
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186
Query: 660 KGGHANVVQLLL 671
+ G+ + ++L
Sbjct: 187 QKGYTEISKILA 198
Score = 144 bits (366), Expect = 9e-40
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLEL 544
+++ + T L +A +++A L+ GA+I L S +P + A +G E+
Sbjct: 29 TYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87
Query: 545 VRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGA------NLDNSTMLIEA 597
+ Y+L ++ + G AL A E GH D LLL G N T LIEA
Sbjct: 88 LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147
Query: 598 A-----KGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ ++V+LL++ K +G TA+ YA + G+T+++ +L Y
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 144 bits (365), Expect = 1e-39
Identities = 45/212 (21%), Positives = 86/212 (40%), Gaps = 18/212 (8%)
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
++ L A + V +L + V++ + G+TPL A + +AK L++
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA-DQEHKTDEMHTALMEASMDGHVE 337
GA IN N +S A +G +++ ++L D AL+ A+ GH++
Sbjct: 62 GADINL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 338 VAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYT--YSRSLVQACSDGDVKTVKKLLT 395
KLLL+ G + + + + + YT ++ + VK L+
Sbjct: 121 NVKLLLEDGREDI----------DFQ----NDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 396 EGRSVHETTDEGESLLSLACSAGYYELAQVLL 427
G + G + + A GY E++++L
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 122 bits (308), Expect = 5e-32
Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 188
A + D++ K L+ G ++ +S A + G E+ +L ++
Sbjct: 46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
Query: 189 GECTPLMEAASSGFIEIVRLLINHG-ADVNGQSSSGNTPLMYACAG-----GHEAVVRVL 242
G L+ AA G I+ V+LL+ G D++ Q+ G T L+ A ++ +V++L
Sbjct: 106 GG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
+E GA+ + +G T + A G+ ++KIL +Y
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 115 bits (290), Expect = 2e-29
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 40/216 (18%)
Query: 381 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 440
A K + L V E EG + L++A E+A+ L+ A++ +
Sbjct: 13 ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72
Query: 441 ECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP--GAKINAHTEET 498
+P + A + GR E ++ ++ +N H
Sbjct: 73 -DSPYLYAGAQGRT----EILA---------------------YMLKHATPDLNKHNRY- 105
Query: 499 QETALTLACCGGFLDVADFLLKNG-ANIE----LGASTPLMEAA-----QEGHLELVRYL 548
AL A G +D LL++G +I+ G T L+EA + + ++V+ L
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG-YTALIEAVGLREGNQLYQDIVKLL 164
Query: 549 LDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
+++GA K +G TA+ YA + G+T+++ +L Y
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 110 bits (277), Expect = 1e-27
Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 57/181 (31%)
Query: 558 KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVH 617
KT L A + V ++L V
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ----------------------------VD 33
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 672
G+T L A N ++A L+ GA++ + + + A G ++ +L
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML- 92
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYG 732
++ + G AL A E GH D LLL G
Sbjct: 93 ----------------------KHAT-PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 733 A 733
Sbjct: 130 R 130
Score = 105 bits (265), Expect = 4e-26
Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 36/225 (16%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
T E +LL A ++ ++L V++ +G TPL A +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN-TPLNIAVHNN----------- 50
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEG 146
D E+ + L +D A + N + S + A + G + + +L
Sbjct: 51 -DIEIAKAL-------IDRGA-------DINLQNSISDSPYLYAGAQGRTEILAYMLKHA 95
Query: 147 RS-VHETTDEGESLLSLACSAGYYELAQVLLAM-HANVEDRGIKGECTPLMEAA-----S 199
+++ G + L A G+ + ++LL +++ + G T L+EA +
Sbjct: 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGN 154
Query: 200 SGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ +IV+LL+ +GAD + + +SG T + YA G+ + ++L +
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 59.4 bits (145), Expect = 3e-10
Identities = 16/116 (13%), Positives = 24/116 (20%), Gaps = 53/116 (45%)
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVI 678
KT L A + V ++L
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ------------------------------ 31
Query: 679 GGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V G+T L A N ++A L+ GA+
Sbjct: 32 -----------------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Score = 40.9 bits (97), Expect = 5e-04
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 35/180 (19%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 63
A + D++ K L+ G ++ +S A + G E+ +L ++
Sbjct: 46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
Query: 64 GECTPLMEAASSGFGK-----LATGDGKLADPEVLRRL--TSSVSCALDEAAAALTRMRN 116
G L+ AA G L G D + T AL EA
Sbjct: 106 GG-NALIPAAEKGHIDNVKLLLEDGR---EDIDFQNDFGYT-----ALIEAV-------- 148
Query: 117 ENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
++ + VK L+ G + G + + A GY E++++L
Sbjct: 149 ----------GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 187 bits (477), Expect = 9e-55
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 151 ETTDEGESLLSLACSAGYYELAQVLLAMH----ANVEDRGIKGECTPLMEAASSGFIEIV 206
++G++ L +A G L+ + ++ + TPL A + +V
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVV 62
Query: 207 RLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA----NVEDHNENGHTPLME 262
RLL+ GA G T AC +R LL+ A ++E N +G T L
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 263 AASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDE 322
A + ++LLE GA I+ + S L A L MV+ LL GA+ +
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 323 MHTALMEASMDGHVEVAKLLLDSGA 347
+AL AS G + + + L+ SGA
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGA 207
Score = 184 bits (469), Expect = 1e-53
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 11/227 (4%)
Query: 130 ACSDGDVKTVKKLL----TEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
A G++ V +L+ GR + + ++ L LA + ++L+ A+
Sbjct: 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGA----DVNGQSSSGNTPLMYACAGGHEAVVRV 241
G T A +R L++ A D+ ++ G T L A + V++
Sbjct: 76 DRHG-QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL 134
Query: 242 LLECGANVEDHN-ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYK 300
LLE GA+++ + ++G +PL+ A + + ++LL++GA +N SAL A +
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSGSSALHSASGR 193
Query: 301 GHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
G L +VR L+ +GAD K T LM A +++ + A
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 175 bits (446), Expect = 2e-50
Identities = 53/266 (19%), Positives = 85/266 (31%), Gaps = 67/266 (25%)
Query: 482 SVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQ 538
++ G +++ + ++T L LA V L+ GA+ T A +
Sbjct: 30 NLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88
Query: 539 EGHLELVRYLLDSGAQ----VHAKTQTGDTALTYACENGHTDVADLLLSYGANL------ 588
+R LLDS A + A+ G TAL A + LLL GA++
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
+ LI A + ++VQLLL +V+A+ +G +AL A G + L+ GA+
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 649 LDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQT 708
K
Sbjct: 209 -----------------------------------------------------SSLKNCH 215
Query: 709 GDTALTYACENGHTDVADLLLSYGAN 734
DT L A D+ + A+
Sbjct: 216 NDTPLMVARSRRVIDILRGKATRPAS 241
Score = 165 bits (421), Expect = 6e-47
Identities = 52/223 (23%), Positives = 81/223 (36%), Gaps = 44/223 (19%)
Query: 531 TPLMEAAQEGHLELVRYLLD----SGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
TPL A +G+L V L++ G ++ T L A V LL++ GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 587 NL-----DNSTMLIEAAKGGHANVVQLLLD----FPRSVHAKTQTGDTALTYACENGHTD 637
+ T A + ++ LLD + A+ G TAL A +
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 638 VADLLLSYGANL------DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSS 691
LLL GA++ + LI A + ++VQLLL
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-------------------- 170
Query: 692 HLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
G + V+A+ +G +AL A G + L+ GA+
Sbjct: 171 ---QHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Score = 163 bits (415), Expect = 5e-46
Identities = 66/340 (19%), Positives = 103/340 (30%), Gaps = 109/340 (32%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEY----GAGINTHSNEFKESALTLACYKGHLDMVRF 308
+E+G TPL A G++ L+ G ++ + N +++ L LA +VR
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRL 64
Query: 309 LLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPS 368
L++AGA TA A + LLDS A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-------------------- 104
Query: 369 SISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLA 428
+ +G + L +A + E Q+LL
Sbjct: 105 ---------------------------GTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137
Query: 429 MHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP- 487
A+++ IK +PL+ A + V +L+
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSL----SMVQ---------------------LLLQH 172
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRY 547
GA +NA +G S+ L A+ G L LVR
Sbjct: 173 GANVNAQM------------------------YSG-------SSALHSASGRGLLPLVRT 201
Query: 548 LLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
L+ SGA K DT L A D+ + A+
Sbjct: 202 LVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 162 bits (412), Expect = 1e-45
Identities = 58/265 (21%), Positives = 92/265 (34%), Gaps = 45/265 (16%)
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMH----ANVEDRGIKGECTPLMEAASSGRQCNL 457
++G++ L +A G L+ + ++ + TPL A +
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP--- 59
Query: 458 NESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVAD 516
V +L+ GA A Q TA LAC
Sbjct: 60 -SVVR---------------------LLVTAGASPMALDRHGQ-TAAHLACEHRSPTCLR 96
Query: 517 FLLKNGA----NIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAK-TQTGDTALTY 568
LL + A ++E T L A E V+ LL+ GA + A ++G + L +
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156
Query: 569 ACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTG 623
A EN + LLL +GAN+ S+ L A+ G +V+ L+ K
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 624 DTALTYACENGHTDVADLLLSYGAN 648
DT L A D+ + A+
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPAS 241
Score = 153 bits (390), Expect = 1e-42
Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 27/245 (11%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLE----CGANVEDHNENGHTPLMEAASAGHVGV 271
G+TPL A G+ V L+ G ++ +N TPL A V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ----EHKTDEMHTAL 327
++L+ GA + ++A LAC +R LL + A E + + TAL
Sbjct: 62 VRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 328 MEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDV 387
A E +LLL+ GA D + L+ A + +
Sbjct: 121 HVAVNTECQETVQLLLERGA--------------DIDAVDIKSGRS---PLIHAVENNSL 163
Query: 388 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 447
V+ LL G +V+ G S L A G L + L+ A+ + + TPLM
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND-TPLMV 222
Query: 448 AASSG 452
A S
Sbjct: 223 ARSRR 227
Score = 148 bits (377), Expect = 7e-41
Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 36/264 (13%)
Query: 26 ETTDEGESLLSLACSAGYYELAQVLLAMH----ANVEDRGIKGECTPLMEAASSGFGKLA 81
++G++ L +A G L+ + ++ + TPL A +
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITT----- 57
Query: 82 TGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVK 140
P V+R L + A + ++ ++ AC ++
Sbjct: 58 -------LPSVVRLL-------VTAGA-------SPMALDRHGQTAAHLACEHRSPTCLR 96
Query: 141 KLLTEG----RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 196
LL + +G + L +A + E Q+LL A+++ IK +PL+
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156
Query: 197 AASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENG 256
A + + +V+LL+ HGA+VN Q SG++ L A G +VR L+ GA+ N +
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 257 HTPLMEAASAGHVGVAKILLEYGA 280
TPLM A S + + + A
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPA 240
Score = 127 bits (322), Expect = 2e-33
Identities = 49/197 (24%), Positives = 68/197 (34%), Gaps = 44/197 (22%)
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSY----GANL-----DNSTMLIEAAKGGHANVVQ 607
+ GDT L A G+ L++ G L T L A +VV+
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 608 LLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA---------NLDNSTMLIEA 658
LL+ S A + G TA ACE+ LL A N D T L A
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 659 AKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAK-TQTGDTALTYAC 717
VQLLL+ + + + A ++G + L +A
Sbjct: 124 VNTECQETVQLLLE-------------------------RGADIDAVDIKSGRSPLIHAV 158
Query: 718 ENGHTDVADLLLSYGAN 734
EN + LLL +GAN
Sbjct: 159 ENNSLSMVQLLLQHGAN 175
Score = 96.0 bits (240), Expect = 2e-22
Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 67/250 (26%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL----AMHANVEDR 60
A V+ L+T G S G++ LAC + LL ++E R
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
G T L A ++ + ++L L+ A + +
Sbjct: 113 NYDGL-TALHVAVNTECQETV---------QLL----------LERGA-------DIDAV 145
Query: 121 PQNER--SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 178
L+ A + + V+ LL G +V+ G
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG---------------------- 183
Query: 179 HANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAV 238
+ L A+ G + +VR L+ GAD + ++ +TPLM A + +
Sbjct: 184 ------------SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231
Query: 239 VRVLLECGAN 248
+R A+
Sbjct: 232 LRGKATRPAS 241
Score = 38.6 bits (91), Expect = 0.003
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSY----GANL 735
+ GDT L A G+ L++ G L
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 39
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 188 bits (479), Expect = 1e-54
Identities = 58/399 (14%), Positives = 93/399 (23%), Gaps = 131/399 (32%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGAD---VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
T L A + L+ A ++ Q+ G T L A G + V L GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
V GHT L A A +LL+ +++
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT------------------ 111
Query: 308 FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERP 367
L+ D T A +++ + E D Q
Sbjct: 112 -YLTQSQDCTPDTSH-APAAVDSQPNPENEEEPRDEDWRLQ------------------- 150
Query: 368 SSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 427
+ +G + L +A E+ ++L
Sbjct: 151 --------------------------------LEAENYDGHTPLHVAVIHKDAEMVRLLR 178
Query: 428 AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP 487
A++ TPL A + + +L+
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAA----SVLE---------------------LLLK 213
Query: 488 -GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVR 546
GA A G TPL A + L R
Sbjct: 214 AGADPTARM------------------------YGG-------RTPLGSALLRPNPILAR 242
Query: 547 YLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYG 585
L GA + + + + +D D Y
Sbjct: 243 LLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 185 bits (473), Expect = 1e-53
Identities = 60/267 (22%), Positives = 88/267 (32%), Gaps = 56/267 (20%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIEL------GASTPLMEAAQEGHLELVRYLLDSGA 553
+TAL LA DFLL A E T L AA G V L +GA
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 554 QVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-------------------NSTML 594
V + G TAL AC A +LL + ++
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 595 IEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD---- 650
+++ D+ + A+ G T L A + ++ LL GA+L+
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 651 --NSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQT 708
T L A + A+V++LLL G + A+
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLL-----------------------KAG--ADPTARMYG 224
Query: 709 GDTALTYACENGHTDVADLLLSYGANL 735
G T L A + +A LL ++GA
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAPE 251
Score = 183 bits (467), Expect = 7e-53
Identities = 48/235 (20%), Positives = 74/235 (31%), Gaps = 18/235 (7%)
Query: 130 ACSDGDVKTVKKLLTEG---RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
A + LL + D G++ L LA G + L A A V
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTP--------------LMYACA 232
G T L A +L+ +S + +
Sbjct: 76 RGGH-TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 233 GGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKES 292
+ +E N +GHTPL A + ++L + GA +N +
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
L LA ++ LL AGAD + T L A + + +A+LL GA
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 176 bits (450), Expect = 2e-50
Identities = 61/372 (16%), Positives = 102/372 (27%), Gaps = 98/372 (26%)
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEH---KTDEMHTALMEASMDGHVEV 338
+ + E ++AL LA H + FLL A E+ + D TAL A++ G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 339 AKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGR 398
+ L +GA
Sbjct: 61 VEKLYAAGA--------------------------------------------------- 69
Query: 399 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLN 458
V G + L LAC + A VLL + + + C +
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY-------LTQSQDCTPD 122
Query: 459 ESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFL 518
S + A + ++ A + T L +A ++ L
Sbjct: 123 TSHAPAAVDSQPNPENEEEPR----DEDWRLQLEAENYD-GHTPLHVAVIHKDAEMVRLL 177
Query: 519 LKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
GA++ TPL A + ++ LL +GA A+ G T L A +
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237
Query: 575 TDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENG 634
+A LL ++GA + + + +
Sbjct: 238 PILARLLRAHGAP----------------------------EPEDGGDKLSPCSSSGSDS 269
Query: 635 HTDVADLLLSYG 646
+D D Y
Sbjct: 270 DSDNRDEGDEYD 281
Score = 173 bits (440), Expect = 4e-49
Identities = 62/326 (19%), Positives = 91/326 (27%), Gaps = 70/326 (21%)
Query: 151 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE--CTPLMEAASSGFIEIVRL 208
T++G++ L LA + LL A E ++ + T L AA G V
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV-------------EDHNEN 255
L GA V G+T L AC VLL+ + + +
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123
Query: 256 GHTPLMEAASAGHVG-VAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
H P + ++ + N + L +A +MVR L AGA
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 315 DQEHKT-DEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYT 373
D T L A V +LLL +GA
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-------------------------- 216
Query: 374 YSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 433
G + L A LA++L A A
Sbjct: 217 -------------------------DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251
Query: 434 EDRGIKGECTPLMEAASSGRQCNLNE 459
+ G +P + S N +E
Sbjct: 252 PEDGGDK-LSPCSSSGSDSDSDNRDE 276
Score = 171 bits (435), Expect = 2e-48
Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 15/229 (6%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR---- 185
A G+ TV+KL G V G + L LAC + A VLL +
Sbjct: 52 AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111
Query: 186 ---------GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHE 236
+++ + E + + ++ G+TPL A
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171
Query: 237 AVVRVLLECGANV-EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALT 295
+VR+L + GA++ + G TPL A A V ++LL+ GA + L
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLG 230
Query: 296 LACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
A + + + R L + GA + + + + D + +
Sbjct: 231 SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 165 bits (421), Expect = 2e-46
Identities = 63/420 (15%), Positives = 93/420 (22%), Gaps = 145/420 (34%)
Query: 317 EHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSR 376
+ T++ TAL A + H LL A
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSA----------------------------- 33
Query: 377 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 436
+ D G++ L LA G + L A A V
Sbjct: 34 -------------------GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74
Query: 437 GIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTE 496
G T L A + + + L T
Sbjct: 75 ERGGH-TALHLACRVRAH----TCACVLLQPRPSHPRDASDTY-----LTQSQDCTPDTS 124
Query: 497 ETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGA 553
A + + +E TPL A E+VR L D+GA
Sbjct: 125 HA--PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 554 QVHAKTQT-GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDF 612
++ T G T L A E V +LLL GA+
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------------------------- 217
Query: 613 PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 672
A+ G T L A + +A LL ++GA
Sbjct: 218 ---PTARMYGGRTPLGSALLRPNPILARLLRAHGAP------------------------ 250
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYG 732
+ + + + +D D Y
Sbjct: 251 -----------------------------EPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 163 bits (416), Expect = 1e-45
Identities = 52/279 (18%), Positives = 89/279 (31%), Gaps = 17/279 (6%)
Query: 5 ACSDGDVKTVKKLLTEG---RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
A + LL + D G++ L LA G + L A A V
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSS-VSCALDEAAAALTRMRNENPR 120
G T L A L S D + LT+ ++ P
Sbjct: 76 RGGH-TALHLACRVRA------------HTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
+ + V + + + + + + +G + L +A E+ ++L A
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
++ TPL A + ++ LL+ GAD + G TPL A + + R
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
+L GA + + +P + S EY
Sbjct: 243 LLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 91.5 bits (228), Expect = 2e-20
Identities = 31/183 (16%), Positives = 41/183 (22%), Gaps = 78/183 (42%)
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSV 616
T+ GDTAL A + H D LL + A +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAG-------------------------HEYL 38
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRS 676
+ G TAL A G + L + GA
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAG---------------------------- 70
Query: 677 VIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLR 736
V + G TAL AC A +LL +
Sbjct: 71 -------------------------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105
Query: 737 NRT 739
Sbjct: 106 RDA 108
Score = 48.3 bits (116), Expect = 4e-06
Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 27/176 (15%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
V + + + + + + +G + L +A E+ ++L A++
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
TPL A + + E+L L A + R
Sbjct: 189 PTCGRTPLHLAVEAQAASVL---------ELL----------LKAGA-------DPTARM 222
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
R+ L A + + L G E + S S + S +
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 186 bits (475), Expect = 3e-54
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)
Query: 126 SLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVED 184
+ + + + +G S+H TD GE+ L LA + A+ LL A+
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85
Query: 185 RGIKGECTPLMEAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
+ G TPL A S+ + ++LI + A D++ + G TPL+ A E ++ L+
Sbjct: 86 QDNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
A+V ++ G + L AA+ +V A +LL+ GA + N +E+ L LA +G
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSY 203
Query: 304 DMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ + LL A+++ A H ++ +LL
Sbjct: 204 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 182 bits (464), Expect = 1e-52
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
G + + + A++ ++ + T L AA + + L+ AD
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-NVEDHNENGHTPLMEAASAGHVGVAKI 274
N Q + G TPL A + + V ++L+ A +++ +G TPL+ AA G+ +
Sbjct: 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 275 LLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDG 334
L+ A +N ++ +SAL A ++D LL GA+++ + + T L A+ +G
Sbjct: 143 LINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201
Query: 335 HVEVAKLLLDSGA 347
E AK+LLD A
Sbjct: 202 SYETAKVLLDHFA 214
Score = 176 bits (450), Expect = 8e-51
Identities = 67/312 (21%), Positives = 99/312 (31%), Gaps = 74/312 (23%)
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
+V RG G TPLM A+ SG S S + GA +
Sbjct: 2 DVNVRGPDGF-TPLMIASCSGGGLETGNSEEEEDAPAV-----------ISDFIYQGASL 49
Query: 492 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYL 548
+ T+ T ETAL LA D A LL+ A+ + + TPL A + + L
Sbjct: 50 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 549 LDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQ 607
+ + A + A+ G T L A + + L++ A+
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-------------------- 149
Query: 608 LLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGG 662
V+A G +AL +A + D A +LL GAN T L AA+ G
Sbjct: 150 --------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201
Query: 663 HANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHT 722
++LL + A E H
Sbjct: 202 SYETAKVLL-----------------------DHF--ANRDITDHMDRLPRDIAQERMHH 236
Query: 723 DVADLLLSYGAN 734
D+ LL +
Sbjct: 237 DIVRLLDLEHHH 248
Score = 172 bits (439), Expect = 3e-49
Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 35/267 (13%)
Query: 181 NVEDRGIKGECTPLMEAASSGF-------------IEIVRLLINHGADV-NGQSSSGNTP 226
+V RG G TPLM A+ SG ++ I GA + N +G T
Sbjct: 2 DVNVRGPDGF-TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 227 LMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG-INTH 285
L A + LLE A+ + G TPL A SA GV +IL+ A ++
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA- 119
Query: 286 SNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS 345
+ L LA M+ L+++ AD D +AL A+ +V+ A +LL +
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 346 GAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTD 405
GA + + R T L A +G +T K LL + T
Sbjct: 180 GAN-----------KDMQNNR----EET---PLFLAAREGSYETAKVLLDHFANRDITDH 221
Query: 406 EGESLLSLACSAGYYELAQVLLAMHAN 432
+A ++++ ++L H +
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 166 bits (424), Expect = 4e-47
Identities = 73/262 (27%), Positives = 107/262 (40%), Gaps = 17/262 (6%)
Query: 56 NVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD-PEVLRRLTSSVSCALDEAAAALTRM 114
+V RG G TPLM A+ SG G + D P V+ A+L
Sbjct: 2 DVNVRGPDGF-TPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--------QGASLHNQ 52
Query: 115 RNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV 174
+ E +L A K+LL + + G + L A SA + Q+
Sbjct: 53 TDRT----GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108
Query: 175 LLAMHA-NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAG 233
L+ A +++ R G TPL+ AA ++ LIN ADVN G + L +A A
Sbjct: 109 LIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 234 GHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESA 293
+ VLL+ GAN + N TPL AA G AK+LL++ A + ++
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLP 226
Query: 294 LTLACYKGHLDMVRFLLSAGAD 315
+A + H D+VR L
Sbjct: 227 RDIAQERMHHDIVRLLDLEHHH 248
Score = 157 bits (399), Expect = 9e-44
Identities = 53/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR 466
G + + + A++ ++ + T L AA R
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR------------- 69
Query: 467 HDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGA-N 524
A+ L+ A N + T L A V L++N A +
Sbjct: 70 ------------SDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 525 IELGA---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
++ +TPL+ AA+ ++ L++S A V+A G +AL +A + D A +L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 582 LSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHT 636
L GAN T L AA+ G ++LLD + A E H
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 236
Query: 637 DVADLLLSYGANLDN 651
D+ LL + +
Sbjct: 237 DIVRLLDLEHHHHHH 251
Score = 153 bits (389), Expect = 3e-42
Identities = 71/349 (20%), Positives = 110/349 (31%), Gaps = 105/349 (30%)
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+V +G TPLM A+ +G + ++
Sbjct: 2 DVNVRGPDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVIS 40
Query: 308 FLLSAGADQEHKTDEM-HTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
+ GA ++TD TAL A+ + AK LL++ A
Sbjct: 41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA------------------- 81
Query: 367 PSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
+ + G + L A SA + Q+L
Sbjct: 82 --------------------------------DANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 427 LAMHA-NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVIL 485
+ A +++ R G TPL+ AA + + L
Sbjct: 110 IRNRATDLDARMHDGT-TPLILAARLAVE----GMLE---------------------DL 143
Query: 486 IP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGH 541
I A +NA + ++AL A +D A LLKNGAN ++ + TPL AA+EG
Sbjct: 144 INSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 542 LELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
E + LLD A A E H D+ LL + +
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251
Score = 141 bits (357), Expect = 6e-38
Identities = 47/257 (18%), Positives = 92/257 (35%), Gaps = 29/257 (11%)
Query: 31 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADP 90
G + + + A++ ++ + T L AA
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS------------RS 70
Query: 91 EVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRS- 148
+ +RL L+ +A + N + R+ L A S + L+ +
Sbjct: 71 DAAKRL-------LEASA-------DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 149 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRL 208
+ +G + L LA + + L+ HA+V G+ + L AA+ ++ +
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVV 175
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH 268
L+ +GA+ + Q++ TPL A G +VLL+ AN + + P A H
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 269 VGVAKILLEYGAGINTH 285
+ ++L + H
Sbjct: 236 HDIVRLLDLEHHHHHHH 252
Score = 80.2 bits (199), Expect = 6e-17
Identities = 50/215 (23%), Positives = 75/215 (34%), Gaps = 30/215 (13%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 63
A K+LL + + G + L A SA + Q+L+ A +++ R
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 64 GECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
G TPL+ AA + E L ++ A + N
Sbjct: 124 GT-TPLILAARLAVEGML---------EDL----------INSHA-------DVNAVDDL 156
Query: 124 ERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
+S L A + +V LL G + + E+ L LA G YE A+VLL AN
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 216
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
+ P A +IVRLL +
Sbjct: 217 DITDHMDR-LPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 38.2 bits (90), Expect = 0.006
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 13/51 (25%)
Query: 702 VHAKTQTGDTALTYACENG-------------HTDVADLLLSYGANLRNRT 739
V+ + G T L A +G V + GA+L N+T
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT 53
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 184 bits (470), Expect = 5e-54
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 4/213 (1%)
Query: 138 TVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLME 196
+ + +G S+H TD GE+ L LA + A+ LL A+ + G TPL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR-TPLHA 64
Query: 197 AASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNEN 255
A S+ + ++LI + A D++ + G TPL+ A E ++ L+ A+V ++
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
G + L AA+ +V A +LL+ GA + N +E+ L LA +G + + LL A+
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFAN 183
Query: 316 QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
++ A H ++ +LL +
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216
Score = 179 bits (456), Expect = 6e-52
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 2/183 (1%)
Query: 166 AGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNT 225
+ + A++ ++ + T L AA + + L+ AD N Q + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 226 PLMYACAGGHEAVVRVLLECGA-NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINT 284
PL A + + V ++L+ A +++ +G TPL+ AA G+ + L+ A +N
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 285 HSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
++ +SAL A ++D LL GA+++ + + T L A+ +G E AK+LLD
Sbjct: 121 -VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
Query: 345 SGA 347
A
Sbjct: 180 HFA 182
Score = 177 bits (451), Expect = 2e-51
Identities = 52/241 (21%), Positives = 81/241 (33%), Gaps = 40/241 (16%)
Query: 509 GGFLDVADFLLKNGANIELGA----STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
G V + GA++ T L AA+ + + LL++ A + + G T
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 565 ALTYACENGHTDVADLLLSYGA------NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHA 618
L A V +L+ A D +T LI AA+ +++ L++ V+A
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 619 KTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDF 673
G +AL +A + D A +LL GAN T L AA+ G ++LL
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-- 178
Query: 674 PRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
+ A E H D+ LL Y
Sbjct: 179 ---------------------DHF--ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Query: 734 N 734
Sbjct: 216 V 216
Score = 159 bits (405), Expect = 6e-45
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 3/187 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 188
A K+LL + + G + L A SA + Q+L+ A +++ R
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91
Query: 189 GECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGAN 248
G TPL+ AA ++ LIN ADVN G + L +A A + VLL+ GAN
Sbjct: 92 GT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 150
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRF 308
+ N TPL AA G AK+LL++ A + ++ +A + H D+VR
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERMHHDIVRL 209
Query: 309 LLSAGAD 315
L
Sbjct: 210 LDEYNLV 216
Score = 158 bits (402), Expect = 2e-44
Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 23/237 (9%)
Query: 201 GFIEIVRLLINHGADV-NGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
++ I GA + N +G T L A + LLE A+ + G TP
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L A SA GV +IL+ A + L LA M+ L+++ AD
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPN--DKCERPSSISYTYSRS 377
D +AL A+ +V+ A +LL +GA + + E T
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGAN-----------KDMQNNREE------T---P 161
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 434
L A +G +T K LL + T +A ++++ ++L +
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 153 bits (390), Expect = 7e-43
Identities = 53/242 (21%), Positives = 85/242 (35%), Gaps = 36/242 (14%)
Query: 417 AGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSV 476
+ + A++ ++ + T L AA R
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR----------------------- 37
Query: 477 NGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGA-NIELGA---ST 531
A+ L+ A N + T L A V L++N A +++ +T
Sbjct: 38 --SDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 532 PLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL--- 588
PL+ AA+ ++ L++S A V+A G +AL +A + D A +LL GAN
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154
Query: 589 --DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
T L AA+ G ++LLD + A E H D+ LL Y
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Query: 647 AN 648
Sbjct: 215 LV 216
Score = 138 bits (350), Expect = 2e-37
Identities = 64/293 (21%), Positives = 95/293 (32%), Gaps = 84/293 (28%)
Query: 301 GHLDMVRFLLSAGADQEHKTDEM-HTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFF 359
++ + GA ++TD TAL A+ + AK LL++ A
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA------------ 49
Query: 360 PNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY 419
+ + G + L A SA
Sbjct: 50 ---------------------------------------DANIQDNMGRTPLHAAVSADA 70
Query: 420 YELAQVLLAMHA-NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNG 478
+ Q+L+ A +++ R G TPL+ AA + +
Sbjct: 71 QGVFQILIRNRATDLDARMHDGT-TPLILAARLAVE----GMLE---------------- 109
Query: 479 LQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLM 534
LI A +NA + ++AL A +D A LLKNGAN ++ TPL
Sbjct: 110 -----DLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 535 EAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
AA+EG E + LLD A A E H D+ LL Y
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216
Score = 137 bits (349), Expect = 3e-37
Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 29/246 (11%)
Query: 41 AGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSV 100
+ + A++ ++ + T L AA + +RL
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS------------RSDAAKRL---- 44
Query: 101 SCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEG-RSVHETTDEGES 158
L+ +A + N + R+ L A S + L+ + +G +
Sbjct: 45 ---LEASA-------DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 159 LLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNG 218
L LA + + L+ HA+V G+ + L AA+ ++ +L+ +GA+ +
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDM 153
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
Q++ TPL A G +VLL+ AN + + P A H + ++L EY
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213
Query: 279 GAGINT 284
+
Sbjct: 214 NLVRSP 219
Score = 79.4 bits (197), Expect = 6e-17
Identities = 50/215 (23%), Positives = 76/215 (35%), Gaps = 30/215 (13%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 63
A K+LL + + G + L A SA + Q+L+ A +++ R
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91
Query: 64 GECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
G TPL+ AA + E L ++ A + N
Sbjct: 92 GT-TPLILAARLAVEGML---------EDL----------INSHA-------DVNAVDDL 124
Query: 124 ERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
+S L A + +V LL G + + E+ L LA G YE A+VLL AN
Sbjct: 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR 184
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
+ P A +IVRLL + +
Sbjct: 185 DITDHMDR-LPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 28.5 bits (65), Expect = 6.4
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 720 GHTDVADLLLSYGANLRNRT 739
V + GA+L N+T
Sbjct: 2 DAPAVISDFIYQGASLHNQT 21
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 181 bits (461), Expect = 1e-52
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 11/210 (5%)
Query: 150 HETTDEGESLLSLACSAGY----YELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEI 205
+ T++G+S L LA E+ + + A + + + TPL A + EI
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60
Query: 206 VRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDH------NENGHTP 259
L+ G D + GNTPL AC G A V VL + H N NGHT
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L A+ G++G+ ++L+ GA +N +AL LA + D+V LL GAD
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 320 TDEMHTALMEASMDGHVEVAKLLLDSGAQS 349
T + ++ + + L ++
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Score = 156 bits (396), Expect = 2e-43
Identities = 45/248 (18%), Positives = 74/248 (29%), Gaps = 60/248 (24%)
Query: 500 ETALTLACCGG----FLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSG 552
++ L LA ++V + + A + + TPL A E+ LL +G
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 553 AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDF 612
+ G+T L ACE G +L
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL---------------------- 106
Query: 613 PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL------DNSTMLIEAAKGGHANV 666
+ A G T L A +G+ + +LL+S GA++ + T L A + ++
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 667 VQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVAD 726
V LLL G + V+ T G + T +
Sbjct: 167 VSLLL-----------------------KCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQ 201
Query: 727 LLLSYGAN 734
L
Sbjct: 202 QLGQLTLE 209
Score = 153 bits (390), Expect = 1e-42
Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 9/208 (4%)
Query: 139 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 198
++++ + ++ + ++ L LA E+A+ LL + E R +G TPL A
Sbjct: 28 IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN-TPLHLAC 86
Query: 199 SSGFIEIVRLLINHGAD------VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV-ED 251
G + V +L + + +G+T L A G+ +V +L+ GA+V
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
NG T L A + + +LL+ GA +N S L + + + L
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQ 205
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVA 339
+ E + E
Sbjct: 206 LTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 148 bits (377), Expect = 7e-41
Identities = 54/272 (19%), Positives = 83/272 (30%), Gaps = 62/272 (22%)
Query: 191 CTPLMEAASSG----FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
+ L A +E++R + A +N Q++ TPL A + LL G
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 247 ANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS-----NEFKESALTLACYKG 301
+ E + G+TPL A G + +L + + HS N + L LA G
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 302 HLDMVRFLLSAGADQEHKTDEM-HTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFP 360
+L +V L+S GAD + TAL A + ++ LLL GA
Sbjct: 129 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA------------- 175
Query: 361 NDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYY 420
V+ T +G S L
Sbjct: 176 --------------------------------------DVNRVTYQGYSPYQLTWGRPST 197
Query: 421 ELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
+ Q L + + E S
Sbjct: 198 RIQQQLGQLTLENLQMLPESE-DEESYDTESE 228
Score = 143 bits (362), Expect = 8e-39
Identities = 48/222 (21%), Positives = 74/222 (33%), Gaps = 36/222 (16%)
Query: 442 CTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQET 501
+ L A + E + A +N Q T
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGD--------------------LAFLNFQNNLQQ-T 47
Query: 502 ALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGA----- 553
L LA ++A+ LL G + EL +TPL A ++G L V L S
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 554 -QVHAKTQTGDTALTYACENGHTDVADLLLSYGANL------DNSTMLIEAAKGGHANVV 606
+ A G T L A +G+ + +LL+S GA++ + T L A + ++V
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 607 QLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
LLL V+ T G + T + L
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209
Score = 136 bits (344), Expect = 2e-36
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 7/183 (3%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGI-- 187
A + + LL G G + L LAC G VL I
Sbjct: 52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111
Query: 188 ---KGECTPLMEAASSGFIEIVRLLINHGADVNGQ-SSSGNTPLMYACAGGHEAVVRVLL 243
T L A+ G++ IV LL++ GADVN Q +G T L A + +V +LL
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
+CGA+V G++P + + L + E E +
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE-SEDEESYDTESEFT 230
Query: 304 DMV 306
+
Sbjct: 231 EFT 233
Score = 126 bits (319), Expect = 5e-33
Identities = 52/362 (14%), Positives = 82/362 (22%), Gaps = 140/362 (38%)
Query: 287 NEFKESALTLACYKGH----LDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
E +S L LA ++++R + A + + T L A + E+A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 343 LDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHE 402
L +G
Sbjct: 65 LGAGC---------------------------------------------------DPEL 73
Query: 403 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVS 462
G + L LAC G VL L
Sbjct: 74 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH------------------LHSILKA--- 112
Query: 463 AYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNG 522
+ NG T L LA G+L + + L+ G
Sbjct: 113 -----------TNYNG---------------------HTCLHLASIHGYLGIVELLVSLG 140
Query: 523 ANIE----LGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVA 578
A++ T L A + +LV LL GA V+ T G + T +
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ 200
Query: 579 DLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDV 638
L + +Y E+ T+
Sbjct: 201 QQLGQLTLE----------------------------NLQMLPESEDEESYDTESEFTEF 232
Query: 639 AD 640
+
Sbjct: 233 TE 234
Score = 115 bits (291), Expect = 2e-29
Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 36/254 (14%)
Query: 25 HETTDEGESLLSLACSAGY----YELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKL 80
+ T++G+S L LA E+ + + A + + + TPL A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITN---- 56
Query: 81 ATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVK 140
PE+ L A +R+ L AC G + +V
Sbjct: 57 --------QPEIAEALLG---------AGCDPELRDFR----GNTPLHLACEQGCLASVG 95
Query: 141 KLLTEG------RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 194
L + T G + L LA GY + ++L+++ A+V + T L
Sbjct: 96 VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 195 MEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE 254
A ++V LL+ GADVN + G +P + + L +
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Query: 255 NGHTPLMEAASAGH 268
+
Sbjct: 216 ESEDEESYDTESEF 229
Score = 79.5 bits (197), Expect = 7e-17
Identities = 22/127 (17%), Positives = 32/127 (25%), Gaps = 34/127 (26%)
Query: 617 HAKTQTGDTALTYACENGHT----DVADLLLSYGANL-----DNSTMLIEAAKGGHANVV 667
T+ GD+ L A + +V + A L T L A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 668 QLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADL 727
+ LL G + G+T L ACE G +
Sbjct: 62 EALL-----------------------GAG--CDPELRDFRGNTPLHLACEQGCLASVGV 96
Query: 728 LLSYGAN 734
L
Sbjct: 97 LTQSCTT 103
Score = 58.7 bits (143), Expect = 8e-10
Identities = 33/235 (14%), Positives = 48/235 (20%), Gaps = 71/235 (30%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGI-- 62
A + + LL G G + L LAC G VL I
Sbjct: 52 AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111
Query: 63 ---KGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENP 119
T L A+ G+ ++ L S +
Sbjct: 112 ATNYNGHTCLHLASIHGY------------LGIVELLVS----------------LGADV 143
Query: 120 RPQNERS----LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
Q + L A + V LL G V+ T +G
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG------------------- 184
Query: 176 LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYA 230
+P I + L + Y
Sbjct: 185 ---------------YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
Score = 39.1 bits (92), Expect = 0.002
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 703 HAKTQTGDTALTYACENGHT----DVADLLLSYGANL 735
T+ GD+ L A + +V + A L
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL 38
Score = 37.5 bits (88), Expect = 0.008
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A + V LL G V+ T +G S L + Q L + +
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217
Query: 65 ECTPLMEAASSGFGKLA 81
E S F +
Sbjct: 218 E-DEESYDTESEFTEFT 233
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 179 bits (457), Expect = 3e-52
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 14/224 (6%)
Query: 120 RPQNERS------LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQ 173
+P + + +A + +T +L E + TD ++ S G L
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP 62
Query: 174 VLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAG 233
V ++ + PL EAA G + +R +++ VNG +G+T L +AC G
Sbjct: 63 -----SNYVAEQAESID-NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG 116
Query: 234 GHEAVVRVLL-ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKES 292
GH+ +V +L + + N+ G T L AA G+ + ++LL GA + N K+
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEKKL 175
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHV 336
A +A +++ A + E + ++ ++ H
Sbjct: 176 AFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 161 bits (409), Expect = 2e-45
Identities = 41/199 (20%), Positives = 76/199 (38%), Gaps = 8/199 (4%)
Query: 150 HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
+ G+ + A L ++ + T + S G ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLI--- 61
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
V Q+ S + PL A G+ + +R L+ V ++ G T L A GH
Sbjct: 62 --PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 270 GVAKILL-EYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALM 328
+ ++L + +N N+ ++AL A +KG+ D+V+ LL+ GA + + E A
Sbjct: 120 DIVEMLFTQPNIELNQ-QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 329 EASMDGHVEVAKLLLDSGA 347
A+ + K + A
Sbjct: 179 MATNAACASLLKKKQGTDA 197
Score = 153 bits (390), Expect = 7e-43
Identities = 44/221 (19%), Positives = 64/221 (28%), Gaps = 38/221 (17%)
Query: 520 KNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVAD 579
K G + A L + T DT G T +
Sbjct: 10 KPG-------QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP 62
Query: 580 LLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVA 639
L EAAK G+ + ++ LD V+ + G TAL +AC GH D+
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 640 DLLLS-YGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHL 693
++L + L T L AA G+A++VQLLL
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA--------------------- 161
Query: 694 CSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
K + + A A + A
Sbjct: 162 ----KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198
Score = 152 bits (385), Expect = 3e-42
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 46/237 (19%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGAQV 555
+ + A D L +I ++ T + +G L+ V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMS-DTNWWKGTSKGRTGLIP-----SNYV 66
Query: 556 HAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLL 610
+ ++ D L A + G+ L + ST L A GGH ++V++L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126
Query: 611 DFPR-SVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHA 664
P ++ + + GDTAL A G+ D+ LLL+ GA + A A
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA 186
Query: 665 NVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGH 721
++++ G + + H
Sbjct: 187 SLLKKKQ-------------------------GTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 151 bits (384), Expect = 5e-42
Identities = 40/263 (15%), Positives = 76/263 (28%), Gaps = 59/263 (22%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
+ A + L D+ + +T + G ++ V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVA 67
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ E+ PL EAA G++ + L+ G+N ++ +AL AC+ GH D+V L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLF 126
Query: 311 S-AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSS 369
+ + + TAL A+ G+ ++ +LLL GA+
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR--------------------- 165
Query: 370 ISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 429
E + +A +A L +
Sbjct: 166 ------------------------------TDLRNIEKKLAFDMATNAACASLLKKKQGT 195
Query: 430 HANVEDRGIKGECTPLMEAASSG 452
A + ++
Sbjct: 196 DAVRTLSNAEDY-LDDEDSDLEH 217
Score = 139 bits (352), Expect = 1e-37
Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 8/179 (4%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ S G + L V E + ++ L A G + L V
Sbjct: 49 WWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103
Query: 187 IKGECTPLMEAASSGFIEIVRLLINH-GADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
G T L A G +IV +L ++N Q+ G+T L A G+ +V++LL
Sbjct: 104 KAG-STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD 304
GA + N A +A + K A + E + + H
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE-DYLDDEDSDLEHHHH 220
Score = 132 bits (334), Expect = 2e-35
Identities = 35/246 (14%), Positives = 75/246 (30%), Gaps = 33/246 (13%)
Query: 25 HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGD 84
+ G+ + A L ++ + T + S G L
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIPS- 63
Query: 85 GKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLT 144
+ E+ + L +A G++ +++ L
Sbjct: 64 -------------------------NYVAEQAES----IDNPLHEAAKRGNLSWLRECLD 94
Query: 145 EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGFI 203
V+ G + L AC G+ ++ ++L + + G+ T L AA G+
Sbjct: 95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYA 153
Query: 204 EIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEA 263
+IV+LL+ GA + ++ A ++++ A N + ++
Sbjct: 154 DIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Query: 264 ASAGHV 269
H
Sbjct: 214 DLEHHH 219
Score = 124 bits (313), Expect = 2e-32
Identities = 41/263 (15%), Positives = 67/263 (25%), Gaps = 65/263 (24%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
+ +A + +T +L E + TD ++ S G L V ++
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQA 70
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTE 496
+ PL EAA G L + +N +
Sbjct: 71 ESID-NPLHEAAKRGN-------------------------LSWLRECLDNRVGVNGLDK 104
Query: 497 ETQETALTLACCGGFLDVADFLLKN-GANIELG---ASTPLMEAAQEGHLELVRYLLDSG 552
TAL AC GG D+ + L + T L AA +G+ ++V+ LL G
Sbjct: 105 A-GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 553 AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDF 612
A+ + A A + A
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV------------------------- 198
Query: 613 PRSVHAKTQTGDTALTYACENGH 635
+ H
Sbjct: 199 ---RTLSNAEDYLDDEDSDLEHH 218
Score = 109 bits (274), Expect = 3e-27
Identities = 36/295 (12%), Positives = 72/295 (24%), Gaps = 89/295 (30%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
+ G + A L I + ++ KG ++
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIP----- 62
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
+ + + L EA+ G++ + LD+
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV------------------------- 97
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH-A 431
V+ G + L AC G+ ++ ++L
Sbjct: 98 --------------------------GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAK 490
+ + G+ T L AA G + V +L+ GA+
Sbjct: 132 ELNQQNKLGD-TALHAAAWKGYA----DIVQ---------------------LLLAKGAR 165
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHL 542
+ E ++ A +A + A L ++ E H
Sbjct: 166 TDLRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 101 bits (254), Expect = 1e-24
Identities = 33/284 (11%), Positives = 64/284 (22%), Gaps = 82/284 (28%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
+ A Y L D + TD T + + G +
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN---------- 64
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
+ L +A G++ +++ L V+ G + L
Sbjct: 65 ----YVAEQAESID---------NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY 111
Query: 413 LACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
AC G+ ++ ++L + + G+ T L AA G + V
Sbjct: 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGD-TALHAAAWKGYA----DIVQ--------- 157
Query: 472 NDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS 530
+L+ GA+ +
Sbjct: 158 ------------LLLAKGARTDLRN------------------------IEK-------K 174
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
A L++ + A + H
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 71.1 bits (175), Expect = 4e-14
Identities = 12/123 (9%), Positives = 26/123 (21%), Gaps = 35/123 (28%)
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLL 671
+ G + A D L ++ + T + G ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---- 61
Query: 672 DFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSY 731
+ V + ++ D L A + G+ L
Sbjct: 62 --------------------------PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN 95
Query: 732 GAN 734
Sbjct: 96 RVG 98
Score = 70.7 bits (174), Expect = 6e-14
Identities = 31/234 (13%), Positives = 61/234 (26%), Gaps = 64/234 (27%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ S G + L V E + ++ L A G + L V
Sbjct: 49 WWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
G T L A G +++ L + + L++ +N+
Sbjct: 104 KAG-STALYWACHGGH------------KDIVEMLFTQPNIELNQ--------QNKL--- 139
Query: 122 QNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 181
+ +L A G V+ LL +G A
Sbjct: 140 -GDTALHAAAWKGYADIVQLLLAKG---------------------------------AR 165
Query: 182 VEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGH 235
+ R I+ + A ++ +++ A ++ + H
Sbjct: 166 TDLRNIEKK-LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 174 bits (445), Expect = 7e-51
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 8/189 (4%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
GE + + + L N D TPLM A G + L+ +
Sbjct: 8 GEIVEKIKDEKSINQNLDFLR----NYRD---SYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+ + G+T L++A + LL G+NV + +G TPLM + G+ ++ L
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
LE+GA +N N E+ L +A G ++V+ LL GAD + TA A + G
Sbjct: 121 LEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 336 VEVAKLLLD 344
EV K+ +
Sbjct: 180 QEVIKIFTE 188
Score = 161 bits (411), Expect = 5e-46
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 9/192 (4%)
Query: 130 ACSDGDVKTVKKLLTEGRSVH-------ETTDEGESLLSLACSAGYYELAQVLLAMHANV 182
+ D + + V+K+ E + L +AC G L+ +
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 183 EDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
ED+ I+G T L+ A + + I L++ G++VN + SG TPLM++ G+ + L
Sbjct: 62 EDKDIEG-STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120
Query: 243 LECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGH 302
LE GANV D N G TPL+ A+ G + K LLE GA I+ + +A A G
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGLTAEASARIFGR 179
Query: 303 LDMVRFLLSAGA 314
++++
Sbjct: 180 QEVIKIFTEVRR 191
Score = 154 bits (393), Expect = 1e-43
Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 73/255 (28%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLL----KNGANIELGASTPLMEAAQEGHLE 543
G+ ++ + E + DFL TPLM A G
Sbjct: 1 GSHMDKN----GEIVEKIKDEKSINQNLDFLRNYRDSYN-------RTPLMVACMLGMEN 49
Query: 544 LVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHA 603
+ L+++ ++ K G TAL +A +N +A+ LLS G+N
Sbjct: 50 AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---------------- 93
Query: 604 NVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEA 658
V+ K +G T L ++ G+++++ LL +GAN+ + T LI A
Sbjct: 94 ------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Query: 659 AKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACE 718
+K G + +V+ LL G + + A+ TG TA A
Sbjct: 142 SKYGRSEIVKKLL-----------------------ELG--ADISARDLTGLTAEASARI 176
Query: 719 NGHTDVADLLLSYGA 733
G +V +
Sbjct: 177 FGRQEVIKIFTEVRR 191
Score = 149 bits (380), Expect = 9e-42
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+ + L N+ + S TPLM AC G E + L+E +ED
Sbjct: 10 IVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ G T L+ A +G+A+ LL G+ +NT + ++ L + G+ +M FLL
Sbjct: 64 KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLE 122
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
GA+ + E T L+ AS G E+ K LL+ GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 136 bits (346), Expect = 4e-37
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
AC G + KL+ + + EG + L A +A+ LL+ +NV + G
Sbjct: 42 ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ TPLM + G+ E+ L+ HGA+VN ++ G TPL+ A G +V+ LLE GA++
Sbjct: 102 K-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI 160
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+ G T A G V KI E
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 131 bits (333), Expect = 2e-35
Identities = 53/246 (21%), Positives = 82/246 (33%), Gaps = 67/246 (27%)
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR 466
GE + + + L N D TPLM A G + ++
Sbjct: 8 GEIVEKIKDEKSINQNLDFLR----NYRD---SYNRTPLMVACMLGME----NAID---- 52
Query: 467 HDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 525
L+ K+ E TAL A L +A+ LL G+N+
Sbjct: 53 -----------------KLVENFDKLEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 526 E----LGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
G TPLM + G+ E+ +LL+ GA V+ + G+T L A + G +++ L
Sbjct: 95 NTKDFSG-KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 582 LSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADL 641
L GA+ + A+ TG TA A G +V +
Sbjct: 154 LELGAD----------------------------ISARDLTGLTAEASARIFGRQEVIKI 185
Query: 642 LLSYGA 647
Sbjct: 186 FTEVRR 191
Score = 112 bits (283), Expect = 1e-28
Identities = 45/242 (18%), Positives = 76/242 (31%), Gaps = 62/242 (25%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
G+ ++ +G + L + TPLM A G
Sbjct: 1 GSHMDK---NGEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAI 51
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
L+E + + +AL A L + LLS G++ K T LM + +
Sbjct: 52 DKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110
Query: 333 DGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKK 392
G+ E++ L + +
Sbjct: 111 FGYSEMSYFL---------------------------LEH-------------------- 123
Query: 393 LLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
G +V++ EGE+ L +A G E+ + LL + A++ R + G T A G
Sbjct: 124 ----GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL-TAEASARIFG 178
Query: 453 RQ 454
RQ
Sbjct: 179 RQ 180
Score = 96.3 bits (241), Expect = 4e-23
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L+ A + + +KLL++G +V+ G++ L + GY E++ LL ANV DR
Sbjct: 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
++GE TPL+ A+ G EIV+ L+ GAD++ + +G T A G + V+++ E
Sbjct: 132 LEGE-TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 95.1 bits (238), Expect = 1e-22
Identities = 52/309 (16%), Positives = 82/309 (26%), Gaps = 119/309 (38%)
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEV 338
G+ ++ + E + K + FL ++ T LM A M G
Sbjct: 1 GSHMDKN----GEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENA 50
Query: 339 AKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGR 398
L +
Sbjct: 51 IDKL---------------------------VEN------------------------FD 59
Query: 399 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLN 458
+ + EG + L A +A+ LL+ +NV + G TPLM + G
Sbjct: 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG-KTPLMWSIIFGYS---- 114
Query: 459 ESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHTEETQETALTLACCGGFLDVADF 517
E L+ GA +N
Sbjct: 115 EMSY---------------------FLLEHGANVNDRN---------------------- 131
Query: 518 LLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
G TPL+ A++ G E+V+ LL+ GA + A+ TG TA A G +V
Sbjct: 132 --LEG-------ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Query: 578 ADLLLSYGA 586
+
Sbjct: 183 IKIFTEVRR 191
Score = 48.2 bits (116), Expect = 2e-06
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 690 SSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+Q + + T L AC G + D L+
Sbjct: 16 DEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Score = 43.1 bits (103), Expect = 8e-05
Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 28/173 (16%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC G + KL+ + + EG + L A +A+ LL+ +NV + G
Sbjct: 42 ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPLM + G+ +++ L L+ A N N R
Sbjct: 102 -KTPLMWSIIFGYSEMS---------YFL----------LEHGA-------NVNDRNLEG 134
Query: 125 R-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
L+ A G + VKKLL G + G + + A G E+ ++
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 42.8 bits (102), Expect = 1e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L+ A + + +KLL++G +V+ G++ L + GY E++ LL ANV DR
Sbjct: 72 LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131
Query: 62 IKGECTPLMEAASSG 76
++GE TPL+ A+ G
Sbjct: 132 LEGE-TPLIVASKYG 145
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 171 bits (437), Expect = 4e-50
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
L+EAA +G + VR+L+ +GADVN + +SG TPL A GH +V VLL+ GA+V
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ G TPL AA GH+ + ++LL+ GA +N ++ + L LA GHL++V LL
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLL 343
GAD + TA + +G+ ++A++L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 155 bits (395), Expect = 3e-44
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 515 ADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
+ +G+++ L+EAA+ G + VR L+ +GA V+A+ +G T L A NGH
Sbjct: 4 SHHHHHHGSDLG----KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Query: 575 TDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTY 629
++ ++LL GA++ T L AA GH +V++LL V+A G T L
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 630 ACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLL 671
A GH ++ ++LL GA++ T + G+ ++ ++L
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 152 bits (386), Expect = 6e-43
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQ 219
L A AG + ++L+A A+V G TPL AA +G +EIV +L+ +GADVN
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG 279
+G TPL A GH +V VLL+ GA+V ++ GHTPL AA GH+ + ++LL+ G
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 280 AGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
A +N ++F ++A ++ G+ D+ L
Sbjct: 137 ADVN-AQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 151 bits (384), Expect = 1e-42
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
G+ + H L A G D L+ NGA++ TPL AA GHLE+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAK 599
V LL +GA V+A G T L A GH ++ ++LL GA++ + T L AA
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 600 GGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
GH +V++LL V+A+ + G TA + +NG+ D+A++L
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 144 bits (365), Expect = 4e-40
Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 208 LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAG 267
+HG+D L+ A G + VR+L+ GA+V + +G TPL AA G
Sbjct: 6 HHHHHGSD-------LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 268 HVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTAL 327
H+ + ++LL+ GA +N + + L LA GHL++V LL GAD E HT L
Sbjct: 59 HLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPL 117
Query: 328 MEASMDGHVEVAKLLLDSGA 347
A+M GH+E+ ++LL +GA
Sbjct: 118 HLAAMFGHLEIVEVLLKNGA 137
Score = 134 bits (341), Expect = 8e-37
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 1/149 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A G V+ L+ G V+ G + L LA G+ E+ +VLL A+V G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL AA G +EIV +L+ +GADVN G+TPL A GH +V VLL+ GA+V
Sbjct: 81 -MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEY 278
++ G T + G+ +A+IL +
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 113 bits (286), Expect = 2e-29
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 31/178 (17%)
Query: 411 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFF 470
L A AG + ++L+A A+V G TPL AA +G E V
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGW-TPLHLAAFNGHL----EIVE-------- 64
Query: 471 PNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA 529
+L+ GA +NA T L LA G L++ + LLKNGA++
Sbjct: 65 -------------VLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 530 ---STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
TPL AA GHLE+V LL +GA V+A+ + G TA + +NG+ D+A++L
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 112 bits (284), Expect = 4e-29
Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 54/209 (25%)
Query: 246 GANVED-HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD 304
G++ H + L+EAA AG +IL+ GA +N + + L LA + GHL+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLE 61
Query: 305 MVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKC 364
+V LL GAD T L A++ GH+E+ ++LL +GA
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----------------- 104
Query: 365 ERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQ 424
V+ EG + L LA G+ E+ +
Sbjct: 105 ----------------------------------DVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 425 VLLAMHANVEDRGIKGECTPLMEAASSGR 453
VLL A+V + G T + +G
Sbjct: 131 VLLKNGADVNAQDKFG-KTAFDISIDNGN 158
Score = 59.3 bits (145), Expect = 2e-10
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 53/112 (47%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSL 682
L A G D +L++ GA+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGAD---------------------------------- 39
Query: 683 SSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V+A+ +G T L A NGH ++ ++LL GA+
Sbjct: 40 -------------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Score = 45.8 bits (110), Expect = 8e-06
Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 28/173 (16%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G V+ L+ G V+ G + L LA G+ E+ +VLL A+V G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
TPL AA G ++ EVL L A + N
Sbjct: 81 -MTPLRLAALFGHLEIV---------EVL----------LKNGA-------DVNANDMEG 113
Query: 125 R-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
L A G ++ V+ LL G V+ G++ ++ G +LA++L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 173 bits (441), Expect = 8e-50
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 11/222 (4%)
Query: 130 ACSDGDVKTVKKLL-TEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 188
AC + + V++LL ++ + + +G L + S +E+ LL+ NV
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 189 GE--CTPLMEAASSGFIEIVRLLINH--GADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ TP A S G +E+V+ L + D+N ++ G T L A V + L+E
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG-AGINTHSNEFKESALTLACYKGHL 303
GA+V ++ PL AAS G + + ++L G + +N ++ + L A +GH
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHG 187
Query: 304 DMVRFLLSA-GADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
D L+ GA+ + ++ A A + +V K L+
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 166 bits (423), Expect = 2e-47
Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 41/222 (18%)
Query: 530 STPLMEAAQEGHLELVR-YLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 588
+ PL +A E V+ L + + K Q G L ++ ++ LLS N+
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 589 --------DNSTMLIEAAKGGHANVVQLLLDFPRS--VHAKTQTGDTALTYACENGHTDV 638
T A G+ VV+ L D P ++ T G T L A +V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 639 ADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHL 693
+ L+ GA++ N L AA G +++LL
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC---------------------- 160
Query: 694 CSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLS-YGAN 734
G KS V+ + + G T L +A GH D A LL+ YGA
Sbjct: 161 -GLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200
Score = 165 bits (421), Expect = 5e-47
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 26/243 (10%)
Query: 191 CTPLMEAASSG-FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
PL +A F ++ LL + + + + G PL ++ + + LL NV
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 250 ---EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS-NEFKESALTLACYKGHLDM 305
+ +++G TP A S G++ V K L + + + + L LA K ++
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCE 365
+FL+ GA K L A+ G +++ +LL G +V+ DK
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW--------QDKQG 174
Query: 366 RPSSISYTYSRSLVQACSDGDVKTVKKLLTE-GRSVHETTDEGESLLSLACSAGYYELAQ 424
+T L A ++G L+ + G ++G +A + ++ +
Sbjct: 175 ------WT---PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKK 222
Query: 425 VLL 427
L
Sbjct: 223 FFL 225
Score = 158 bits (402), Expect = 2e-44
Identities = 53/252 (21%), Positives = 87/252 (34%), Gaps = 49/252 (19%)
Query: 442 CTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQE 500
PL +A + +L + + ++
Sbjct: 3 NYPLHQACMEN---EFFKVQE---------------------LLHSKPSLLLQKDQD-GR 37
Query: 501 TALTLACCGGFLDVADFLLKNGANIELGAS------TPLMEAAQEGHLELVRYLLD--SG 552
L + ++ FLL N+ L TP A G+LE+V+ L D
Sbjct: 38 IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
Query: 553 AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQ 607
++ T G T L A +V+ L+ GA++ N L AA G +++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 608 LLLDFPRS-VHAKTQTGDTALTYACENGHTDVADLLLS-YGANL-----DNSTMLIEAAK 660
LL +S V+ + + G T L +A GH D A LL+ YGA + A
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL- 216
Query: 661 GGHANVVQLLLD 672
+ V + L+
Sbjct: 217 --NEQVKKFFLN 226
Score = 148 bits (377), Expect = 5e-41
Identities = 52/235 (22%), Positives = 95/235 (40%), Gaps = 26/235 (11%)
Query: 223 GNTPLMYACAGGH-EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
N PL AC V +L + + +++G PL + S + LL
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 282 INT--HSNEFKESALTLACYKGHLDMVRFLLS--AGADQEHKTDEMHTALMEASMDGHVE 337
+N + ++ + +AC G+L++V+ L D T++ T L A E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 338 VAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEG 397
V++ L+++GA SV + + P L +A S G +K ++ L G
Sbjct: 122 VSQFLIENGA-SVRIKDKFNQIP-----------------LHRAASVGSLKLIELLCGLG 163
Query: 398 RS-VHETTDEGESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAAS 450
+S V+ +G + L A + G+ + A +L+ + A + KG A +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVALN 217
Score = 134 bits (341), Expect = 4e-36
Identities = 60/275 (21%), Positives = 94/275 (34%), Gaps = 68/275 (24%)
Query: 381 ACSDGDVKTVKKLL-TEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 439
AC + + V++LL ++ + + +G L + S +E+ LL+ NV
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 440 GE--CTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI---PGAKINAH 494
+ TP A S G L+ L +N
Sbjct: 69 DDSGWTPFHIACSVGN-------------------------LEVVKSLYDRPLKPDLNKI 103
Query: 495 TEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDS 551
T + T L LA + +V+ FL++NGA++ + PL AA G L+L+ L
Sbjct: 104 TNQ-GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 552 G-AQVHAKTQTGDTALTYACENGHTDVADLLLS-YGANLDNSTMLIEAAKGGHANVVQLL 609
G + V+ + + G T L +A GH D A LL+ YGA
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---------------------- 200
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
G A A V L+
Sbjct: 201 ------YDLVDNKGAKAEDVALNE---QVKKFFLN 226
Score = 121 bits (306), Expect = 2e-31
Identities = 52/333 (15%), Positives = 93/333 (27%), Gaps = 113/333 (33%)
Query: 256 GHTPLMEAASAGHVG-VAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+ PL +A V ++L + + ++ L + ++ FLLS
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 315 D---QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
+ ++ D T A G++EV K L D
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL------------------------ 96
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
+++ T++G + L LA ++E++Q L+ A
Sbjct: 97 -------------------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
+V + PL AAS G + K + L + + +
Sbjct: 132 SVRIKDKFN-QIPLHRAASVG-------------------SLKLIELL----CGLGKSAV 167
Query: 492 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDS 551
N ++ T L A EGH + L++
Sbjct: 168 NWQDKQ-GWTPL------------------------------FHALAEGHGDAAVLLVEK 196
Query: 552 -GAQVHAKTQTGDTALTYACENGHTDVADLLLS 583
GA+ G A A V L+
Sbjct: 197 YGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226
Score = 111 bits (281), Expect = 5e-28
Identities = 57/279 (20%), Positives = 88/279 (31%), Gaps = 67/279 (24%)
Query: 5 ACSDGDVKTVKKLL-TEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
AC + + V++LL ++ + + +G L + S +E+ LL+ NV
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 64 GE--CTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
+ TP A S G EV++ L + N
Sbjct: 69 DDSGWTPFHIACSVGN------------LEVVKSLYDRPLKP------------DLNKIT 104
Query: 122 QNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
L A + + L+ G SV
Sbjct: 105 NQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN------------------------ 140
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHG-ADVNGQSSSGNTPLMYACAGGHEAVV 239
PL AAS G ++++ LL G + VN Q G TPL +A A GH
Sbjct: 141 ----------QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190
Query: 240 RVLLE-CGANVEDHNENGHTPLMEAASAGHVGVAKILLE 277
+L+E GA + + G A + V K L
Sbjct: 191 VLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 111 bits (280), Expect = 6e-28
Identities = 31/182 (17%), Positives = 49/182 (26%), Gaps = 60/182 (32%)
Query: 562 GDTALTYACENGHTD-VADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKT 620
+ L AC V +LL S + + K
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSL----------------------------LLQKD 33
Query: 621 QTGDTALTYACENGHTDVADLLLSYGANL--------DNSTMLIEAAKGGHANVVQLLLD 672
Q G L ++ ++ LLS N+ T A G+ VV+ L
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY- 92
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYG 732
+ K ++ T G T L A +V+ L+ G
Sbjct: 93 ----------------------DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130
Query: 733 AN 734
A+
Sbjct: 131 AS 132
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 172 bits (437), Expect = 4e-49
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
G+ L + +A V+ L++++ G ++V+ +I
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 214 ADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
D + + G T L A GH +V+ L++ G NV + +G TPL AAS +V V K
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 274 ILLEYGAGINTHSNEFKESALTL--ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
L+E GA + + ++A +G+ +FL + AL +
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180
Query: 332 MDGHVEVAK 340
E+
Sbjct: 181 PQNDDELPM 189
Score = 151 bits (385), Expect = 5e-42
Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 7/212 (3%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L KT + + G V +LL + G ++L Q ++ +
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
+G T L A +G EIV+ L+ G +VN S G TPL A + + V + L+E G
Sbjct: 68 DEGI-TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 247 ANVEDHNENGH---TPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
A V + E G+ ++ L + N+ AL +
Sbjct: 127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI-MNKGVIYALWDYEPQND- 184
Query: 304 DMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
D + H+ DE A ++
Sbjct: 185 DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 150 bits (381), Expect = 2e-41
Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 66/246 (26%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIEL--GASTPLMEAAQEGHLELVRYLLDSGAQVHA 557
+ +L + +G ++ L++++ EG +LV+ ++
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL 65
Query: 558 KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVH 617
G TAL A GHT++ L+ +G N V+
Sbjct: 66 PNDEGITALHNAVCAGHTEIVKFLVQFGVN----------------------------VN 97
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANLD--------NSTMLIEAAKGGHANVVQL 669
A G T L A + V L+ GA + + E + G+ Q
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 670 LLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLL 729
L +K + + AL +L +
Sbjct: 158 LY-----------------------GVQEK--MGIMNKGVIYALWDYEPQND---DELPM 189
Query: 730 SYGANL 735
G +
Sbjct: 190 KEGDCM 195
Score = 140 bits (356), Expect = 4e-38
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 19/232 (8%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+G L + G V+ N L++++ G + + ++
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+ N+ +AL A GH ++V+FL+ G + + T L A+ +V+V K
Sbjct: 63 PSL-PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 342 LLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVH 401
L++SGA V A D T + + +G + + L +
Sbjct: 122 LVESGAA-VFAMTYSDM-------------QTAA-DKCEEMEEGYTQCSQFLYGVQEKMG 166
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGR 453
L EL + + R + E A + +
Sbjct: 167 IMNKGVIYALWDYEPQNDDELP-MKEGDCMTIIHREDEDE-IEWWWARLNDK 216
Score = 128 bits (323), Expect = 1e-33
Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 20/194 (10%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L+ + +G+ V++++ E DEG + L A AG+ E+ + L+ NV
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGN---TPLMYACAGGHEAVVRVLL 243
G TPL AAS +++ + L+ GA V + S G+ + L
Sbjct: 101 SDG-WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159
Query: 244 ECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
+ N+ L + ++ ++ G + ++
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQND---DELPMKEGDCMT-------------IIHREDE 203
Query: 304 DMVRFLLSAGADQE 317
D + + + D+E
Sbjct: 204 DEIEWWWARLNDKE 217
Score = 127 bits (322), Expect = 2e-33
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 37/186 (19%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLDFPRSVH 617
G +L +++G + +L++++ G ++VQ ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 672
G TAL A GHT++ L+ +G N+ D T L AA + V + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV- 123
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGD---TALTYACENGHTDVADLLL 729
G + V A T + E G+T + L
Sbjct: 124 ----------------------ESG--AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159
Query: 730 SYGANL 735
+
Sbjct: 160 GVQEKM 165
Score = 122 bits (309), Expect = 9e-32
Identities = 38/202 (18%), Positives = 63/202 (31%), Gaps = 24/202 (11%)
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
G L + +G + N + L + +G D+V+ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 314 ADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYT 373
D DE TAL A GH E+ K L+ G V+A + P
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTP------------- 106
Query: 374 YSRSLVQACSDGDVKTVKKLLTEGRSVHETTD---EGESLLSLACSAGYYELAQVLLAMH 430
L A S +V+ K L+ G +V T + + GY + +Q L +
Sbjct: 107 ----LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162
Query: 431 ANVEDRGIKGECTPLMEAASSG 452
+ L +
Sbjct: 163 EKMGIMNKGVI-YALWDYEPQN 183
Score = 111 bits (280), Expect = 7e-28
Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 45/240 (18%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L KT + + G V +LL + G ++L Q ++ +
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTE 496
+G T L A +G + L+ G +NA
Sbjct: 68 DEGI-TALHNAVCAGH-------------------------TEIVKFLVQFGVNVNAADS 101
Query: 497 ETQETALTLACCGGFLDVADFLLKNGANIE------LGASTPLMEAAQEGHLELVRYLLD 550
+ T L A + V FL+++GA + + + E +EG+ + ++L
Sbjct: 102 D-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 551 SGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLL 610
++ + AL +L + G + + ++
Sbjct: 161 VQEKMGIMNKGVIYALWDYEPQND---DELPMKEGDC-------MTIIHREDEDEIEWWW 210
Score = 83.8 bits (208), Expect = 3e-18
Identities = 34/272 (12%), Positives = 65/272 (23%), Gaps = 65/272 (23%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L KT + + G V +LL + G ++L Q ++ +
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
+G T L A +G ++ + L + N N
Sbjct: 68 DEGI-TALHNAVCAGHTEIV---------KFL----------VQFGV-------NVNAAD 100
Query: 122 QNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
+ L A S +V+ K L+ G +V T
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD------------------------ 136
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
E G+ + + L + + L +
Sbjct: 137 -------MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---E 186
Query: 241 VLLECGA--NVEDHNENGHTPLMEAASAGHVG 270
+ ++ G + + A G
Sbjct: 187 LPMKEGDCMTIIHREDEDEIEWWWARLNDKEG 218
Score = 51.8 bits (125), Expect = 2e-07
Identities = 37/242 (15%), Positives = 66/242 (27%), Gaps = 66/242 (27%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L+ + +G+ V++++ E DEG + L A AG+ E+ + L+ NV
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAA--ALTRMRNENP 119
G TPL AAS + +V + L ++ AA A+T +
Sbjct: 101 SDG-WTPLHCAASCN------------NVQVCKFL-------VESGAAVFAMTYSDMQTA 140
Query: 120 RPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
+ +G + + L +
Sbjct: 141 AD-----KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI---------------------- 173
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGN--TPLMYACAGGHEA 237
L + E L + G + +A E
Sbjct: 174 ------------YALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDKEG 218
Query: 238 VV 239
V
Sbjct: 219 YV 220
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 170 bits (433), Expect = 2e-48
Identities = 47/263 (17%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
+ G ADV S TP A E + LLE +V+
Sbjct: 16 AMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVD 71
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ENG T L+ A G ++L E GA ++ +AL +A ++V L+
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI 370
GAD E + + TAL A + G + I
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR---------------------I 170
Query: 371 SYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 430
++++ + + + E +G+ + L + V
Sbjct: 171 GLEKVINVLEGQVFEYAEVDE--------IVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222
Query: 431 ANVEDRGIKGECTPLMEAASSGR 453
A K L A +
Sbjct: 223 AEDV---AKDYEDGLEYAVAESV 242
Score = 164 bits (418), Expect = 2e-46
Identities = 44/198 (22%), Positives = 74/198 (37%), Gaps = 10/198 (5%)
Query: 151 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLI 210
T EG + G+ + A+V TP AA + + L+
Sbjct: 10 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE----TPWWTAARKADEQALSQLL 65
Query: 211 NHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN-ENGHTPLMEAASAGHV 269
DV+ +G T L++ G + VR+L E GA+++ + G T L AA
Sbjct: 66 -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124
Query: 270 GVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALME 329
V + L+E GA I +E +AL LA + G + ++E
Sbjct: 125 EVVEALVELGADIE-VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV---INVLE 180
Query: 330 ASMDGHVEVAKLLLDSGA 347
+ + EV +++ G
Sbjct: 181 GQVFEYAEVDEIVEKRGK 198
Score = 164 bits (418), Expect = 2e-46
Identities = 45/252 (17%), Positives = 73/252 (28%), Gaps = 42/252 (16%)
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 550
I + T + G A++ TP AA++ + + LL
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL- 65
Query: 551 SGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL------DNSTMLIEAAKGGHAN 604
V A + G TAL + G LL GA+L T L AA
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE 125
Query: 605 VVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA--NLDNSTMLIEAAKGG 662
VV+ L++ + + + G TAL A E T + +G L+ ++E
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185
Query: 663 HANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHT 722
+A V +++ K G
Sbjct: 186 YAEVDEIV---------------------------------EKRGKGKDVEYLVRWKDGG 212
Query: 723 DVADLLLSYGAN 734
D + + A
Sbjct: 213 DCEWVKGVHVAE 224
Score = 156 bits (396), Expect = 2e-43
Identities = 41/222 (18%), Positives = 67/222 (30%), Gaps = 18/222 (8%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ DG + V E E+ A + LL +V+
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDVDAVD 74
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSS-SGNTPLMYACAGGHEAVVRVLLEC 245
G T L+ A G + VRLL GAD++ + G T L A VV L+E
Sbjct: 75 ENG-RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
GA++E +E G T L A +++G I + + ++
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV----INVLEGQVFEYAEV 189
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ G + + + A
Sbjct: 190 DEIVEKRGKGK--------DVEYLVRWKDGGDCEWVKGVHVA 223
Score = 155 bits (394), Expect = 4e-43
Identities = 50/271 (18%), Positives = 82/271 (30%), Gaps = 47/271 (17%)
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESV 461
T EG + G+ + A+V TP AA + +++
Sbjct: 10 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE----TPWWTAARKADE----QAL 61
Query: 462 SAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKN 521
S L+ ++A E TAL G L +
Sbjct: 62 S---------------------QLLEDRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEA 99
Query: 522 GANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
GA+++ G T L AA E+V L++ GA + + + G TAL A E T
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159
Query: 578 ADLLLSYGA--NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGH 635
+ +G L+ ++E +A V +++ K G
Sbjct: 160 KGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV--------EKRGKGKDVEYLVRWKDG 211
Query: 636 TDVADLLLSYGANL---DNSTMLIEAAKGGH 663
D + + A D L A
Sbjct: 212 GDCEWVKGVHVAEDVAKDYEDGLEYAVAESV 242
Score = 154 bits (391), Expect = 1e-42
Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 15/207 (7%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A D + + +LL E R V + G + L G + ++L A+++ R ++G
Sbjct: 52 AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
T L AA E+V L+ GAD+ + G T L A ++ G +
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
++E + V +I+ + G G + L +K D
Sbjct: 171 ---GLEKVINVLEGQVFEYAEVDEIVEKRGKGKD---------VEYLVRWKDGGDCEWVK 218
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHV 336
A+ K E L A + +
Sbjct: 219 GVHVAEDVAKDYE--DGLEYAVAESVI 243
Score = 135 bits (343), Expect = 3e-36
Identities = 45/328 (13%), Positives = 72/328 (21%), Gaps = 95/328 (28%)
Query: 217 NGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILL 276
+ + G + GH A+V TP AA LL
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL 65
Query: 277 EYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEM-HTALMEASMDGH 335
E ++ +E +AL G VR L AGAD +H+ TAL A+
Sbjct: 66 E-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLT 395
EV + L++ GA
Sbjct: 124 PEVVEALVELGA------------------------------------------------ 135
Query: 396 EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQC 455
+ + G + L LA + + + ++E
Sbjct: 136 ---DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV----INVLEGQVFEYA- 187
Query: 456 NLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVA 515
+I + + L D
Sbjct: 188 -------------------------------EVDEIVEKRGK-GKDVEYLVRWKDGGDCE 215
Query: 516 DFLLKNGANI-ELGASTPLMEAAQEGHL 542
+ A L A E +
Sbjct: 216 WVKGVHVAEDVAKDYEDGLEYAVAESVI 243
Score = 123 bits (312), Expect = 5e-32
Identities = 50/350 (14%), Positives = 74/350 (21%), Gaps = 111/350 (31%)
Query: 256 GHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
G + + G + GH AD
Sbjct: 1 GEVNKIIGSRTAGEGA------------ME--------YLIEWKDGHSPSWVPSSYIAAD 40
Query: 316 QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYS 375
E T A+ + LL
Sbjct: 41 ---VVSEYETPWWTAARKADEQALSQLL-------------------------------- 65
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
E R V + G + L G + ++L A+++
Sbjct: 66 --------------------EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHT 495
R ++G T L AA R E V A GA I
Sbjct: 106 RDMRGGLTALHMAAGYVRP----EVVEALVEL--------------------GADIEVED 141
Query: 496 EETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQV 555
E TAL LA ++ G I L ++E + E+ + G
Sbjct: 142 ER-GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK-- 198
Query: 556 HAKTQTGDTALTYACENGHTDVADLLLSYGANL---DNSTMLIEAAKGGH 602
G D + + A D L A
Sbjct: 199 ------GKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVAESV 242
Score = 108 bits (273), Expect = 8e-27
Identities = 39/323 (12%), Positives = 73/323 (22%), Gaps = 93/323 (28%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
G + GH A + + E+ A K + LL
Sbjct: 12 AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLE- 66
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
D + + TAL+ + G + +L
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRL------------------------------- 95
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQVLLAMHA 431
L G + G + L +A E+ + L+ + A
Sbjct: 96 --------------------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA 135
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKI 491
++E +G T L A + + G +I
Sbjct: 136 DIEVEDERGL-TALELAREILK----TTPKGNPMQF--------------------GRRI 170
Query: 492 NAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDS 551
+ + + +V + + K G + +
Sbjct: 171 GLE----KVINVLEGQVFEYAEVDEIVEKRGKG-----KDVEYLVRWKDGGDCEWVKGVH 221
Query: 552 GAQVHAKTQTGDTALTYACENGH 574
A+ AK + L YA
Sbjct: 222 VAEDVAK--DYEDGLEYAVAESV 242
Score = 83.8 bits (208), Expect = 3e-18
Identities = 36/271 (13%), Positives = 66/271 (24%), Gaps = 47/271 (17%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ DG + V E E+ A + LL +V+
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDVDAVD 74
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
G T L+ A G K +L + A + + R
Sbjct: 75 ENG-RTALLFVAGLGSDKCV---------RLL----------AEAGA-------DLDHRD 107
Query: 122 QNERS--LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
L A + V+ L+ G + + G + L LA +
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+ + ++E + E+ ++ G G
Sbjct: 168 RRIGLEKV----INVLEGQVFEYAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCE 215
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVG 270
V A ++ L A + +G
Sbjct: 216 WVKGVHVAED--VAKDYEDGLEYAVAESVIG 244
Score = 34.9 bits (81), Expect = 0.068
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGANLRNR 738
G ++GH+ A++ +
Sbjct: 10 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE 44
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 167 bits (426), Expect = 2e-48
Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 2/158 (1%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGA-DVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
+ G VRL +++ D+N G +PL +AC G AVV +L+ GA +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
N TPL AAS GH + + LL+Y A IN NE L AC+ G + L
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAEDL 124
Query: 310 LSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
++ GA + +A + + G
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 160 bits (408), Expect = 6e-46
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 7/183 (3%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+ E + C G ++ L N ++G +PL A G +V +LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GA +N + +TPL A + GH +V+ LL+ A++ NE+G+ PL A G VA
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
+ L+ GA ++ N++ E + A + G + +
Sbjct: 122 EDLVANGALVSI-CNKYGEMPVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFW 174
Query: 333 DGH 335
G
Sbjct: 175 KGT 177
Score = 155 bits (394), Expect = 7e-44
Identities = 39/172 (22%), Positives = 62/172 (36%), Gaps = 10/172 (5%)
Query: 501 TALTLACCGGFLDVADFLLKNGAN-IELGAS---TPLMEAAQEGHLELVRYLLDSGAQVH 556
+ C G L N N + G +PL A +EG +V L+ GA+++
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 611
+ DT L A +GH D+ LL Y A++ + L A G V + L+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGH 663
V + G+ + A + + G NL N + G
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL-NRIPYKDTFWKGT 177
Score = 154 bits (391), Expect = 1e-43
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 127 LVQACSDGDVKTVKKLLTEG-RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 185
+ C +G+ V+ L +++ D G S L AC G + ++L+ A +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
+G+ TPL AAS G +IV+ L+ + AD+N + GN PL YAC G + V L+
Sbjct: 69 N-RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHL 303
GA V N+ G P+ +A + + + + G +N +KG
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN-------RIPYKDTFWKGTT 178
Score = 151 bits (385), Expect = 9e-43
Identities = 45/215 (20%), Positives = 74/215 (34%), Gaps = 60/215 (27%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 588
+ +EG+ VR LD+ ++ G + L +AC G + V ++L+ GA +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 589 ----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
+ T L AA GH ++VQ LL + ++A + G+ L YAC G VA+ L++
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 645 YGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHA 704
GA V
Sbjct: 127 NGAL-----------------------------------------------------VSI 133
Query: 705 KTQTGDTALTYACENGHTDVADLLLSYGANLRNRT 739
+ G+ + A + + G NL NR
Sbjct: 134 CNKYGEMPVDKAKAPLRELLRERAEKMGQNL-NRI 167
Score = 130 bits (329), Expect = 4e-35
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 223 GNTPLMYACAGGHEAVVRVLLECGAN-VEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+ C G+ VR+ L+ N + +++G +PL A G V ++L+ GA
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
IN N ++ L LA GH D+V+ LL AD + + L A G +VA+
Sbjct: 65 INV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 342 LLDSGA 347
L+ +GA
Sbjct: 124 LVANGA 129
Score = 125 bits (316), Expect = 3e-33
Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 33/204 (16%)
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSA 463
+ E + C G ++ L N ++G +PL A GR V
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS----AVVE- 56
Query: 464 YARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNG 522
+LI GA+IN +T L LA G D+ LL+
Sbjct: 57 --------------------MLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQKLLQYK 95
Query: 523 ANI----ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVA 578
A+I E G + PL A G ++ L+ +GA V + G+ + A +
Sbjct: 96 ADINAVNEHG-NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLR 154
Query: 579 DLLLSYGANLDNSTMLIEAAKGGH 602
+ G NL N + G
Sbjct: 155 ERAEKMGQNL-NRIPYKDTFWKGT 177
Score = 113 bits (286), Expect = 3e-29
Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 27/202 (13%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAG-INTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ + G+ ++ L+ +N ++ S L AC +G +V L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
GA T L A+ GH ++ + LL A N E
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-----------INAVNEH----G 105
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
L AC G + + L+ G V GE + A + L + M
Sbjct: 106 NV---PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Query: 432 NVEDRGIKGECTPLMEAASSGR 453
N+ P + G
Sbjct: 163 NLNR-------IPYKDTFWKGT 177
Score = 110 bits (279), Expect = 3e-28
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 31/152 (20%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDF-PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
+ + + G+A V+L LD ++ G + L +AC G + V ++L+ GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 648 NL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGV 702
+ + T L AA GH ++VQ LL K+ +
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQ-------------------------YKADI 98
Query: 703 HAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+A + G+ L YAC G VA+ L++ GA
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
Score = 97.5 bits (244), Expect = 1e-23
Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 46/218 (21%)
Query: 325 TALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSD 384
+ +G+ +L LD+ ++ H F P L AC +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP-----------------LHWACRE 49
Query: 385 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
G V+ L+ G ++ ++ L LA S G+ ++ Q LL A++ G P
Sbjct: 50 GRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG-NVP 108
Query: 445 LMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALT 504
L A G+ V A ++ GA ++ + E +
Sbjct: 109 LHYACFWGQ--------------------DQV----AEDLVANGALVSICNKY-GEMPVD 143
Query: 505 LACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHL 542
A + + K G N+ P + +G
Sbjct: 144 KAKAPLRELLRERAEKMGQNLN---RIPYKDTFWKGTT 178
Score = 59.0 bits (144), Expect = 3e-10
Identities = 39/240 (16%), Positives = 64/240 (26%), Gaps = 77/240 (32%)
Query: 2 LVQACSDGDVKTVKKLLTEG-RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDR 60
+ C +G+ V+ L +++ D G S L AC G + ++L+ A +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKL-----ADPEVLRRLTSSVSCALDEAAAALTRMR 115
+G+ TPL AAS G + + AD
Sbjct: 69 N-RGDDTPLHLAASHGHRDIV----QKLLQYKADINA----------------------V 101
Query: 116 NENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
NE+ L AC G + + L+ G V GE + A
Sbjct: 102 NEH----GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA------------ 145
Query: 176 LAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGH 235
+ + G ++N P G
Sbjct: 146 ----------------------KAPLRELLRERAEKMGQNLN------RIPYKDTFWKGT 177
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 166 bits (423), Expect = 4e-48
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
L AA+ G +E + L+ + +VN Q+ G T L G+ + R LL GAN +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL 65
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ G + +AA AG + + LLE+ A +N NE L LA +GHL +V FL+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLRVVEFLVK 124
Query: 312 AGA-DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
A + H+ + TA A + G EV L+ +GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 151 bits (384), Expect = 8e-43
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+ + L+ A + G E LL + NV + G T L G EI R L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQ-VMKLGNPEIARRLLLR 59
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GA+ + + +G + A G ++ LLE A+V + G+ PL AA GH+ V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 273 KILLEYGAG-INTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+ L+++ A + H N ++A LA G ++V + + GA
Sbjct: 120 EFLVKHTASNVG-HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 144 bits (365), Expect = 3e-40
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVH 556
L A G L+ LL+N N+ T L + G+ E+ R LL GA
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPD 64
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 611
K +TG + A G D LL + A++ + + L AAK GH VV+ L+
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 612 F-PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
+V + GDTA A G +V L+ + GA
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 142 bits (361), Expect = 1e-39
Identities = 51/208 (24%), Positives = 71/208 (34%), Gaps = 58/208 (27%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
L AA G LE + LL + V+A+ G TAL G+ ++A LL GAN
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN--- 62
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 649
K +TG + A G D LL + A++
Sbjct: 63 -------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 650 ----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAK 705
+ + L AAK GH VV+ L+ S V +
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLV-----------------------KHTA-SNVGHR 133
Query: 706 TQTGDTALTYACENGHTDVADLLLSYGA 733
GDTA A G +V L+ + GA
Sbjct: 134 NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 134 bits (341), Expect = 7e-37
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A + GD++ + LL +V+ G + L + G E+A+ LL AN + + G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA-N 248
+ +AA +GF++ ++ L+ ADVN + + GN PL A GH VV L++ A N
Sbjct: 71 F-AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
V N G T A G V ++ GAG
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
Score = 113 bits (286), Expect = 2e-29
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 33/188 (17%)
Query: 404 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSA 463
+ + L+ A + G E LL + NV + G T L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQVMKL------------- 47
Query: 464 YARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNG 522
+ + L+ GA + + A GFLD LL+
Sbjct: 48 -------------GNPEIARRLLLRGANPDLKDRT-GFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 523 ANIELG---ASTPLMEAAQEGHLELVRYLLDSGAQ-VHAKTQTGDTALTYACENGHTDVA 578
A++ + + PL AA+EGHL +V +L+ A V + GDTA A G +V
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153
Query: 579 DLLLSYGA 586
L+ + GA
Sbjct: 154 SLMQANGA 161
Score = 100 bits (253), Expect = 5e-25
Identities = 42/202 (20%), Positives = 67/202 (33%), Gaps = 55/202 (27%)
Query: 253 NENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
E L AA+ G + LL+ +N N F +AL + G+ ++ R LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLR 59
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
GA+ + K + +A+ G ++ + LL+ A
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD------------------------ 95
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA- 431
V+ +EG L LA G+ + + L+ A
Sbjct: 96 ---------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 432 NVEDRGIKGECTPLMEAASSGR 453
NV R KG+ T A GR
Sbjct: 129 NVGHRNHKGD-TACDLARLYGR 149
Score = 95.1 bits (238), Expect = 5e-23
Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 31/150 (20%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
L AA G + LL +V+A+ G TAL G+ ++A LL GAN
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVH 703
++ +AA+ G + +Q LL V+
Sbjct: 63 PDLKDRTGFAVIHDAARAGFLDTLQTLL-----------------------EFQAD--VN 97
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGA 733
+ G+ L A + GH V + L+ + A
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Score = 75.5 bits (187), Expect = 4e-16
Identities = 43/233 (18%), Positives = 65/233 (27%), Gaps = 81/233 (34%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
L A +G L+ + LL + + TAL + G+ E+A+ LL GA
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---- 62
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
G +++
Sbjct: 63 -----------------------------------------------PDLKDRTGFAVIH 75
Query: 413 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPN 472
A AG+ + Q LL A+V +G PL AA G
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGH------------------- 115
Query: 473 DKSVNGLQASVILIP-GAK-INAHTEETQETALTLACCGGFLDVADFLLKNGA 523
L+ L+ A + + TA LA G +V + NGA
Sbjct: 116 ------LRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 65.9 bits (162), Expect = 8e-13
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 31/189 (16%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
+ + L+ A + G E LL + NV + G T L G
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG-RTALQ-VMKLG----------- 48
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNER-SLVQACSDGDVKTVKKLLTEG 146
+PE+ RRL L A N + + + + A G + T++ LL
Sbjct: 49 -NPEIARRL-------LLRGA-------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 147 RSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIKGECTPLMEAASSGFIEI 205
V+ +EG L LA G+ + + L+ A NV R KG+ T A G E+
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNEV 152
Query: 206 VRLLINHGA 214
V L+ +GA
Sbjct: 153 VSLMQANGA 161
Score = 41.6 bits (99), Expect = 2e-04
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 7 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 66
G+ + ++LL G + G +++ A AG+ + Q LL A+V +G
Sbjct: 46 KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-N 104
Query: 67 TPLMEAASSG 76
PL AA G
Sbjct: 105 LPLHLAAKEG 114
Score = 38.5 bits (91), Expect = 0.002
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA-NVEDRGIK 63
A G + T++ LL V+ +EG L LA G+ + + L+ A NV R K
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 64 GECTPLMEAASSG 76
G+ T A G
Sbjct: 137 GD-TACDLARLYG 148
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 164 bits (418), Expect = 3e-47
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 4/158 (2%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
+ G ADV S TP A E + LLE +V+
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-DRDVD 70
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ENG T L+ A G ++L E GA ++ +AL +A ++V L+
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
GAD E + + TAL A + G +
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168
Score = 156 bits (398), Expect = 2e-44
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 151 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLI 210
T EG + G+ + A+V TP AA + + L+
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADEQALSQLL 64
Query: 211 NHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHN-ENGHTPLMEAASAGHV 269
DV+ +G T L++ G + VR+L E GA+++ + G T L AA
Sbjct: 65 -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 270 GVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALME 329
V + L+E GA I +E +AL LA + G +
Sbjct: 124 EVVEALVELGADIE-VEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---------- 172
Query: 330 ASMDGHVEVAKLLLD 344
+V +L
Sbjct: 173 -------KVINVLEG 180
Score = 151 bits (384), Expect = 2e-42
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 19/191 (9%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRY 547
I + T + G A++ TP AA++ + +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQ 62
Query: 548 LLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL------DNSTMLIEAAKGG 601
LL V A + G TAL + G LL GA+L T L AA
Sbjct: 63 LL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 602 HANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKG 661
VV+ L++ + + + G TAL A E T + +G +
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI------------ 169
Query: 662 GHANVVQLLLD 672
G V+ +L
Sbjct: 170 GLEKVINVLEG 180
Score = 136 bits (344), Expect = 5e-37
Identities = 40/187 (21%), Positives = 60/187 (32%), Gaps = 24/187 (12%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ DG + V E E+ A + LL +V+
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD 73
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQ-SSSGNTPLMYACAGGHEAVVRVLLEC 245
G T L+ A G + VRLL GAD++ + G T L A VV L+E
Sbjct: 74 ENG-RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
GA++E +E G T L A +++G I +
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG------------------LEKV 174
Query: 306 VRFLLSA 312
+ L
Sbjct: 175 INVLEGQ 181
Score = 129 bits (327), Expect = 1e-34
Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
+ + G + GH A+V TP AA
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQAL 60
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEM-HTALMEAS 331
LLE ++ +E +AL G VR L AGAD +H+ TAL A+
Sbjct: 61 SQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 332 MDGHVEVAKLLLDSGA 347
EV + L++ GA
Sbjct: 119 GYVRPEVVEALVELGA 134
Score = 127 bits (322), Expect = 4e-34
Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 46/214 (21%)
Query: 402 ETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESV 461
T EG + G+ + A+V TP AA + +++
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----ETPWWTAARKADE----QAL 60
Query: 462 SAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKN 521
S L+ ++A E TAL G L +
Sbjct: 61 S---------------------QLLEDRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEA 98
Query: 522 GANIEL----GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
GA+++ G T L AA E+V L++ GA + + + G TAL A E T
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158
Query: 578 ADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 611
+ +G + G V+ +L
Sbjct: 159 KGNPMQFGRRI------------GLEKVINVLEG 180
Score = 102 bits (256), Expect = 3e-25
Identities = 28/205 (13%), Positives = 45/205 (21%), Gaps = 86/205 (41%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
+ ++GH A V ++ +T A LL +
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLLE-DRD--- 68
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
V A + G TAL + G LL G
Sbjct: 69 -------------------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAG---- 99
Query: 651 NSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAK-TQTG 709
A++ + + G
Sbjct: 100 -------------ADL------------------------------------DHRDMRGG 110
Query: 710 DTALTYACENGHTDVADLLLSYGAN 734
TAL A +V + L+ GA+
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGAD 135
Score = 84.5 bits (210), Expect = 4e-19
Identities = 39/274 (14%), Positives = 63/274 (22%), Gaps = 94/274 (34%)
Query: 277 EYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHV 336
E I + + + GH AD + + T A+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADE 57
Query: 337 EVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTE 396
+ LL E
Sbjct: 58 QALSQLL----------------------------------------------------E 65
Query: 397 GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCN 456
R V + G + L G + ++L A+++ R ++G T L AA R
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR--- 122
Query: 457 LNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVAD 516
V ++ GA I E TAL LA
Sbjct: 123 -----------------PEV----VEALVELGADIEVEDERGL-TALELAREILKTTPKG 160
Query: 517 FLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 550
++ G I G +++ L
Sbjct: 161 NPMQFGRRI--------------GLEKVINVLEG 180
Score = 83.3 bits (207), Expect = 1e-18
Identities = 28/209 (13%), Positives = 50/209 (23%), Gaps = 58/209 (27%)
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
G + GH A + + E+ A K
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQA 59
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCE 365
+ LL D + + TAL+ + G + +L
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRL------------------------ 94
Query: 366 RPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDE-GESLLSLACSAGYYELAQ 424
L G + G + L +A E+ +
Sbjct: 95 ---------------------------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 425 VLLAMHANVEDRGIKGECTPLMEAASSGR 453
L+ + A++E +G T L A +
Sbjct: 128 ALVELGADIEVEDERGL-TALELAREILK 155
Score = 82.2 bits (204), Expect = 3e-18
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 28/114 (24%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANLDN--STMLIEAAKGGHANVVQLLLDFPRSVIGG 680
G ++GH+ A++ + T AA+ + LL
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL--------- 64
Query: 681 SLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ V A + G TAL + G LL GA+
Sbjct: 65 -----------------EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101
Score = 55.2 bits (134), Expect = 6e-09
Identities = 32/245 (13%), Positives = 51/245 (20%), Gaps = 84/245 (34%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ DG + V E E+ A + LL +V+
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVD 73
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
G T L+ A G K +L + A + + R
Sbjct: 74 ENG-RTALLFVAGLGSDKCV---------RLL----------AEAGA-------DLDHRD 106
Query: 122 QNERS--LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 179
L A + V+ L+ G + + G
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL---------------------- 144
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
T L A + G + E V+
Sbjct: 145 ------------TALELAREILKTTPKGNPMQFGRRIG-----------------LEKVI 175
Query: 240 RVLLE 244
VL
Sbjct: 176 NVLEG 180
Score = 35.9 bits (84), Expect = 0.021
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 709 GDTALTYACENGHTDVADLLLSYGANLRNR 738
G ++GH+ A++ +
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSE 43
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 161 bits (409), Expect = 3e-46
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Query: 188 KGECTPLMEAASSGFIEIVR-LLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
+ L AA+ G ++ VR LL + + G T L G A+ LL+ G
Sbjct: 1 RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQG 58
Query: 247 ANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
A+ + +G +P+ +AA G + K+L+E+GA +N + LA +GH +V
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVV 117
Query: 307 RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLD 344
FL + +D + T L A G ++ +L
Sbjct: 118 SFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 141 bits (357), Expect = 4e-39
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 160 LSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNG 218
LS A + G + + LL + + G T L G I L+ GA N
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFG-KTALQ-VMMFGSTAIALELLKQGASPNV 63
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
Q +SG +P+ A G ++VL+E GA+V + G P+ A GH V L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA- 122
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ ++ + + L LA +G D+V L
Sbjct: 123 ESDLH-RRDARGLTPLELALQRGAQDLVDILQG 154
Score = 138 bits (350), Expect = 3e-38
Identities = 43/206 (20%), Positives = 67/206 (32%), Gaps = 61/206 (29%)
Query: 531 TPLMEAAQEGHLELVRYLLDS-GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
L AA G ++ VR LL A + G TAL G T +A LL GA+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-- 60
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 649
+ + +G + + A G D +L+ +GA++
Sbjct: 61 --------------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 650 -----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHA 704
+ + A + GH VV L +S +H
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVSFLA--------------------------AESDLHR 128
Query: 705 KTQTGDTALTYACENGHTDVADLLLS 730
+ G T L A + G D+ D+L
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154
Score = 124 bits (314), Expect = 3e-33
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 4/126 (3%)
Query: 223 GNTPLMYACAGGHEAVVRVLLE-CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
L A A G VR LL + + N G T L G +A LL+ GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGAS 60
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
N + S + A G LD ++ L+ GAD + A +GH V
Sbjct: 61 PNV-QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 342 LLDSGA 347
L + +
Sbjct: 120 LA-AES 124
Score = 121 bits (307), Expect = 2e-32
Identities = 42/209 (20%), Positives = 75/209 (35%), Gaps = 58/209 (27%)
Query: 439 KGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEET 498
+ L AA+ G + + V ++ +A
Sbjct: 1 RAG-DRLSGAAARG-------------------DVQEV----RRLLHRELVHPDA-LNRF 35
Query: 499 QETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQV 555
+TAL + G +A LLK GA+ + ++P+ +AA+ G L+ ++ L++ GA V
Sbjct: 36 GKTALQVMMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 556 HAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRS 615
+ TG + A + GHT V L + ++
Sbjct: 95 NVPDGTGALPIHLAVQEGHTAVVSFLAA------------------ESD----------- 125
Query: 616 VHAKTQTGDTALTYACENGHTDVADLLLS 644
+H + G T L A + G D+ D+L
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 92.9 bits (232), Expect = 3e-22
Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 35/146 (23%)
Query: 132 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 191
G +LL +G S + G S + A G+ + +
Sbjct: 44 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK------------------ 85
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
+L+ HGADVN +G P+ A GH AVV L +++
Sbjct: 86 ----------------VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128
Query: 252 HNENGHTPLMEAASAGHVGVAKILLE 277
+ G TPL A G + IL
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154
Score = 87.9 bits (219), Expect = 2e-20
Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 61/205 (29%)
Query: 381 ACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 439
A + GDV+ V++LL E G++ L + G +A LL A+ +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 440 GECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEET 498
G +P+ +AA +G L +L+ GA +N
Sbjct: 68 G-TSPVHDAARTGF-------------------------LDTLKVLVEHGADVNVPD--- 98
Query: 499 QETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAK 558
G + P+ A QEGH +V +L + + +H +
Sbjct: 99 ---------------------GTG-------ALPIHLAVQEGHTAVVSFLA-AESDLHRR 129
Query: 559 TQTGDTALTYACENGHTDVADLLLS 583
G T L A + G D+ D+L
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154
Score = 75.5 bits (187), Expect = 3e-16
Identities = 41/259 (15%), Positives = 62/259 (23%), Gaps = 110/259 (42%)
Query: 293 ALTLACYKGHLDMVRFLL-SAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVS 351
L+ A +G + VR LL + TAL G +A LL GA
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA---- 59
Query: 352 AYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLL 411
S + G S +
Sbjct: 60 -----------------------------------------------SPNVQDTSGTSPV 72
Query: 412 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
A G+ + +VL+ A+V G P+ A G + +V ++
Sbjct: 73 HDAARTGFLDTLKVLVEHGADVNVPDGTG-ALPIHLAVQEG-----HTAVVSF------- 119
Query: 472 NDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAST 531
L + ++ G T
Sbjct: 120 -------------LAAESDLHRRD------------------------ARG-------LT 135
Query: 532 PLMEAAQEGHLELVRYLLD 550
PL A Q G +LV L
Sbjct: 136 PLELALQRGAQDLVDILQG 154
Score = 73.2 bits (181), Expect = 2e-15
Identities = 25/174 (14%), Positives = 39/174 (22%), Gaps = 83/174 (47%)
Query: 562 GDTALTYACENGHTD-VADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKT 620
L+ A G V LL + A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVH----------------------------PDALN 33
Query: 621 QTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGG 680
+ G TAL G T +A LL GA+
Sbjct: 34 RFGKTALQVMM-FGSTAIALELLKQGAS-------------------------------- 60
Query: 681 SLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ + +G + + A G D +L+ +GA+
Sbjct: 61 ---------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD 93
Score = 62.0 bits (152), Expect = 1e-11
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A G + T+K L+ G V+ G + LA G+ + L A +++ R +G
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARG 133
Query: 190 ECTPLMEAASSGFIEIVRLLINH 212
TPL A G ++V +L H
Sbjct: 134 L-TPLELALQRGAQDLVDILQGH 155
Score = 46.3 bits (111), Expect = 5e-06
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G + T+K L+ G V+ G + LA G+ + L A +++ R +G
Sbjct: 75 AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARG 133
Query: 65 ECTPLMEAASSG 76
TPL A G
Sbjct: 134 L-TPLELALQRG 144
Score = 44.3 bits (106), Expect = 2e-05
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 7 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 66
G +LL +G S + G S + A G+ + +VL+ A+V G
Sbjct: 44 MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG-A 102
Query: 67 TPLMEAASSG 76
P+ A G
Sbjct: 103 LPIHLAVQEG 112
Score = 43.2 bits (103), Expect = 4e-05
Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 31/174 (17%)
Query: 5 ACSDGDVKTVKKLLT-EGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
A + GDV+ V++LL E G++ L + G +A LL A+ +
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 64 GECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
G +P+ +AA +GF + L+ L ++ A + N
Sbjct: 68 G-TSPVHDAARTGF------------LDTLKVL-------VEHGA-------DVNVPDGT 100
Query: 124 ERS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 176
+ A +G V L +H G + L LA G +L +L
Sbjct: 101 GALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 158 bits (402), Expect = 2e-45
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
L+EAA +G + VR+L+ +GA G +PL A GH + VLL G + +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+ TPL AAS GH + ++LL++GA +N + K +AL A H ++V L+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLI 120
Query: 311 SAGADQEHKTDEMHTALMEASMDGHVEVAKLL 342
GAD ++ TA + +G+ ++A++L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 139 bits (353), Expect = 1e-38
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 37/179 (20%)
Query: 500 ETALTLACCGGFLDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVH 556
L A G D L+ NGA LG ++PL AAQ GH LL +G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 557 AKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSV 616
A+T+ T L A GH ++ ++LL +GA+ V
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGAD----------------------------V 93
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 670
+AK TAL +A E+ H +V +LL+ YGA++ T + G+ ++ ++L
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 139 bits (352), Expect = 1e-38
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 160 LSLACSAGYYELAQVLLAMHANVE-DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNG 218
L A AG + ++L+A A D +PL AA G +L+ G +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 219 QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
++ TPL A + GH +V VLL+ GA+V + T L A H V ++L++Y
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFL 309
GA ++T ++F ++A ++ G+ D+ L
Sbjct: 123 GADVHT-QSKFCKTAFDISIDNGNEDLAEIL 152
Score = 123 bits (311), Expect = 6e-33
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L++A G V+ L+ G T G S L LA G++ +VLL + + R
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
TPL AAS G IV +L+ HGADVN + T L +A H+ VV +L++ G
Sbjct: 65 KVDR-TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 247 ANVEDHNENGHTPLMEAASAGHVGVAKIL 275
A+V ++ T + G+ +A+IL
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 122 bits (308), Expect = 1e-32
Identities = 44/204 (21%), Positives = 69/204 (33%), Gaps = 82/204 (40%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
L+EAA+ G + VR L+ +GA G + L A + GH ++LL G +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--- 59
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
A+T+ T L A GH ++ ++LL +GA+
Sbjct: 60 -------------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-- 92
Query: 651 NSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGD 710
V+AK
Sbjct: 93 ---------------------------------------------------VNAKDMLKM 101
Query: 711 TALTYACENGHTDVADLLLSYGAN 734
TAL +A E+ H +V +LL+ YGA+
Sbjct: 102 TALHWATEHNHQEVVELLIKYGAD 125
Score = 121 bits (307), Expect = 2e-32
Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEAAKGGHANVVQLLLDFPRSVH 617
L A G D +L++ GA ++ L AA+ GH + ++LL S
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 672
A+T+ T L A GH ++ ++LL +GA++ T L A + H VV+LL+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI- 120
Query: 673 FPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLL 728
G VH +++ TA + +NG+ D+A++L
Sbjct: 121 ----------------------KYGAD--VHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 121 bits (307), Expect = 2e-32
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 33/158 (20%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
GA + + L LA G + LL+ G + + TPL AA EGH +
Sbjct: 25 GAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI 82
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHAN 604
V LL GA V+AK TAL +A E+ H +V +LL+ YGA+
Sbjct: 83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----------------- 125
Query: 605 VVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLL 642
VH +++ TA + +NG+ D+A++L
Sbjct: 126 -----------VHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 104 bits (263), Expect = 2e-26
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 20/172 (11%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+ L+EAA AG +IL+ GA T + S L LA GH LL AG
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTY 374
++ +T T L A+ +GH + ++LL GA N K + T
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-----------VNAK----DMLKMT- 102
Query: 375 SRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 426
+L A + V+ L+ G VH + ++ ++ G +LA++L
Sbjct: 103 --ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 80.9 bits (201), Expect = 4e-18
Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 59/205 (28%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L++A G V+ L+ G T G S L LA G++ +VLL + + R
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHTE 496
TPL AAS G +L+ GA +NA
Sbjct: 65 KVDR-TPLHMAASEGH-------------------------ANIVEVLLKHGADVNAKD- 97
Query: 497 ETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVH 556
T L A + H E+V L+ GA VH
Sbjct: 98 -----------------------MLK-------MTALHWATEHNHQEVVELLIKYGADVH 127
Query: 557 AKTQTGDTALTYACENGHTDVADLL 581
+++ TA + +NG+ D+A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 70.5 bits (174), Expect = 2e-14
Identities = 42/257 (16%), Positives = 64/257 (24%), Gaps = 110/257 (42%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
L A G D VR L++ GA + L A+ GH ++LL +G
Sbjct: 5 KLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV----- 58
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
S T + L
Sbjct: 59 ----------------------------------------------SRDARTKVDRTPLH 72
Query: 413 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPN 472
+A S G+ + +VLL A+V + + T L A Q E V
Sbjct: 73 MAASEGHANIVEVLLKHGADVNAKDMLKM-TALHWATEHNHQ----EVVE---------- 117
Query: 473 DKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAST 531
+LI GA ++ + K T
Sbjct: 118 -----------LLIKYGADVHTQS------------------------KFC-------KT 135
Query: 532 PLMEAAQEGHLELVRYL 548
+ G+ +L L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 53.5 bits (130), Expect = 1e-08
Identities = 15/112 (13%), Positives = 23/112 (20%), Gaps = 54/112 (48%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSL 682
L A G D +L++ G A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANG-----------------APF---------------- 28
Query: 683 SSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
G + L A + GH ++LL G +
Sbjct: 29 ---------------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Score = 44.3 bits (106), Expect = 2e-05
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G T + LL G S T + L +A S G+ + +VLL A+V + +
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100
Query: 65 ECTPLMEAASSG 76
T L A
Sbjct: 101 M-TALHWATEHN 111
Score = 39.7 bits (94), Expect = 8e-04
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 29/175 (16%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L++A G V+ L+ G T G S L LA G++ +VLL + + R
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
TPL AAS G + EVL L A + N +
Sbjct: 65 KVDR-TPLHMAASEGHANIV---------EVL----------LKHGA-------DVNAKD 97
Query: 122 QNER-SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVL 175
+ +L A + V+ L+ G VH + ++ ++ G +LA++L
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 156 bits (396), Expect = 2e-44
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLI-NHGADVNGQSSSGNTPLMYACAGGHEAV 238
A L+EAA +G +E V+ L + +TPL +A +V
Sbjct: 2 AMGNSEA----DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 239 VRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLAC 298
V LL+ GA+V ++ G PL A S GH VA++L+++GA +N ++ +K + L A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEAA 116
Query: 299 YKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
KG ++ + LL GAD K + +T L DG ++ LL A
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 147 bits (373), Expect = 3e-41
Identities = 52/162 (32%), Positives = 73/162 (45%), Gaps = 4/162 (2%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
E + L A AG E + L + N D + TPL AA + +V L+ H
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQH 64
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
GADV+ + G PL AC+ GH V +L++ GA V + TPL EAA+ G +
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
K+LL++GA N + L L G D+ L A
Sbjct: 125 KLLLQHGADPTK-KNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 140 bits (356), Expect = 7e-39
Identities = 56/169 (33%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLL-KNGANIELG---ASTPLMEAAQEGHLE 543
GA N+ + L A G ++ L N STPL AA +
Sbjct: 1 GAMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 544 LVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAA 598
+V YLL GA VHAK + G L AC GH +VA+LL+ +GA + T L EAA
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 599 KGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
G + +LLL K + G+T L ++G TD+ DLL A
Sbjct: 117 AKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 139 bits (353), Expect = 1e-38
Identities = 56/218 (25%), Positives = 77/218 (35%), Gaps = 60/218 (27%)
Query: 522 GANIELGASTPLMEAAQEGHLELVRYLLDS-GAQVHAKTQTGDTALTYACENGHTDVADL 580
GA A L+EAA+ G +E V+ L T L +A V +
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 581 LLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
LL +GA+ VHAK + G L AC GH +VA+
Sbjct: 61 LLQHGAD----------------------------VHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 641 LLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCS 695
LL+ +GA + T L EAA G + +LLL
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-----------------------Q 129
Query: 696 QGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
G K + G+T L ++G TD+ DLL A
Sbjct: 130 HGAD--PTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 131 bits (333), Expect = 1e-35
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC-GANVEDHNENGHTPLMEAASAGHVGV 271
GA N S + L+ A G V+ L N D TPL AA V V
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
+ LL++GA ++ ++ L AC GH ++ L+ GA T L EA+
Sbjct: 58 VEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 332 MDGHVEVAKLLLDSGA 347
G E+ KLLL GA
Sbjct: 117 AKGKYEICKLLLQHGA 132
Score = 125 bits (318), Expect = 9e-34
Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Query: 130 ACSDGDVKTVKKLLTE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 188
A GDV+TVKKL T + + + L A + + LL A+V +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 189 GECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGAN 248
G PL A S G E+ LL+ HGA VN TPL A A G + ++LL+ GA+
Sbjct: 75 G-LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD 133
Query: 249 VEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
N +G+TPL G + +L A
Sbjct: 134 PTKKNRDGNTPLD-LVKDGDTDIQDLLRGDAA 164
Score = 96.7 bits (242), Expect = 1e-23
Identities = 46/205 (22%), Positives = 63/205 (30%), Gaps = 57/205 (27%)
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHS-NEFKESALTLACYKGHLD 304
GA N L+EAA AG V K L +N + + L A +
Sbjct: 1 GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 305 MVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKC 364
+V +LL GAD K L A GH EVA+LL+ GA
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA----------------- 99
Query: 365 ERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQ 424
V+ + L A + G YE+ +
Sbjct: 100 ----------------------------------VVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 425 VLLAMHANVEDRGIKGECTPLMEAA 449
+LL A+ + G TPL
Sbjct: 126 LLLQHGADPTKKNRDGN-TPLDLVK 149
Score = 86.7 bits (216), Expect = 5e-20
Identities = 32/183 (17%), Positives = 48/183 (26%), Gaps = 83/183 (45%)
Query: 552 GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 611
GA +++ D L A + G + L + + N
Sbjct: 1 GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQS----------------VNC------ 35
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLL 671
T L +A V + LL +GA+
Sbjct: 36 -----RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD----------------------- 67
Query: 672 DFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSY 731
VHAK + G L AC GH +VA+LL+ +
Sbjct: 68 ------------------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 732 GAN 734
GA
Sbjct: 98 GAV 100
Score = 79.4 bits (197), Expect = 2e-17
Identities = 50/247 (20%), Positives = 73/247 (29%), Gaps = 85/247 (34%)
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSA-GADQEHKTDEMHTALMEASMDGHVE 337
GA N+ + + L A G ++ V+ L + + T L A+ V
Sbjct: 1 GAMGNSEA----DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 338 VAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEG 397
V + LL GA
Sbjct: 57 VVEYLLQHGA-------------------------------------------------- 66
Query: 398 RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNL 457
VH G L ACS G+YE+A++L+ A V + TPL EAA+ G+
Sbjct: 67 -DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKY--- 121
Query: 458 NESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVAD 516
E +L+ GA + T L L G D+ D
Sbjct: 122 -EICK---------------------LLLQHGADPTKKNRD-GNTPLDLVKD-GDTDIQD 157
Query: 517 FLLKNGA 523
L + A
Sbjct: 158 LLRGDAA 164
Score = 47.4 bits (114), Expect = 2e-06
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A V V+ LL G VH G L ACS G+YE+A++L+ A V +
Sbjct: 49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108
Query: 65 ECTPLMEAASSG 76
TPL EAA+ G
Sbjct: 109 F-TPLHEAAAKG 119
Score = 40.1 bits (95), Expect = 6e-04
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 5 ACSDGDVKTVKKLLTE-GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIK 63
A GDV+TVKKL T + + + L A + + LL A+V +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 64 GECTPLMEAASSG 76
G PL A S G
Sbjct: 75 G-LVPLHNACSYG 86
Score = 37.8 bits (89), Expect = 0.004
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
ACS G + + L+ G V+ + L A + G YE+ ++LL A+ + G
Sbjct: 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG 141
Query: 65 ECTPLMEAA 73
TPL
Sbjct: 142 N-TPLDLVK 149
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 157 bits (398), Expect = 7e-44
Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 5/179 (2%)
Query: 173 QVLLAMHANVE--DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYA 230
+ +L + R L++AA +G +E+V+ + D + + G T L A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 231 CAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFK 290
G + ++V L+ GANV + +G TPL AAS + L+++GA I +
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 291 ESALTLA--CYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+A +G+ D +L AL + S + E+
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESV 179
Score = 150 bits (380), Expect = 2e-41
Identities = 42/206 (20%), Positives = 66/206 (32%), Gaps = 9/206 (4%)
Query: 139 VKKLLTEGRSVHETTDE---GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
++ +L + S + LL A G E+ Q + + +G T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALH 59
Query: 196 EAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNEN 255
A IV LI GA+VN S G TPL A + + L++ GA + +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Query: 256 -GHTPLMEAASA--GHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSA 312
G T + G+ A L + + N AL D + F
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYALWDYS-AEFGDELSFREGE 177
Query: 313 GADQEHKTDEMHTALMEASMDGHVEV 338
+ T A++ G
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGY 203
Score = 140 bits (356), Expect = 4e-38
Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 46/242 (19%)
Query: 517 FLLKNGANIE------LGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYAC 570
+L+ + L L++AA G LE+V+ + + G TAL A
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAI 62
Query: 571 ENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQT-GD 624
+ + D L++ GAN+ T L AA + L+ ++ A T + G
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
Query: 625 TALTYA--CENGHTDVADLLLSYGANLDN-----STMLIEAAKGGHANVVQLLLDFPRSV 677
TA G+ D A L ++ L + + +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL----------- 171
Query: 678 IGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTD-VADLLLSYGANLR 736
+G+ V + +T +A +G V ++
Sbjct: 172 ---------------SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216
Query: 737 NR 738
+
Sbjct: 217 PQ 218
Score = 137 bits (347), Expect = 5e-37
Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 21/208 (10%)
Query: 488 GAKINA--HTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHL 542
L A G L+V +K + T L A +
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67
Query: 543 ELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL------DNSTMLIE 596
+V +L+ +GA V++ G T L A T + L+ +GA + D +T +
Sbjct: 68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Query: 597 AA--KGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL----- 649
+ G+A+ L D +S+ AL +++ +
Sbjct: 128 CDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVLRRDG 186
Query: 650 DNSTMLIEAAKGGHANVVQ--LLLDFPR 675
T AA G V FPR
Sbjct: 187 PEETDWWWAALHGQEGYVPRNYFGLFPR 214
Score = 123 bits (312), Expect = 3e-32
Identities = 38/176 (21%), Positives = 58/176 (32%), Gaps = 14/176 (7%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLEL 544
+ EE TAL A CG + DFL+ GAN+ S TPL AA +
Sbjct: 44 MNDPSQPNEE-GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVI 102
Query: 545 VRYLLDSGAQVHAKTQT-GDTALTYA--CENGHTDVADLLLSYGANLDN-----STMLIE 596
L+ GA + A T + G TA G+ D A L ++ L +
Sbjct: 103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD 162
Query: 597 AAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTD-VADLLLSYGANLDN 651
+ + +V + +T +A +G V +
Sbjct: 163 YSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217
Score = 108 bits (271), Expect = 9e-27
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 4/168 (2%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + V L+T G +V+ G + L A S + L+ A +
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Query: 187 IKGECTPLMEAASS--GFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
+ T + G+ + L + + +S L A + +
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREG 176
Query: 245 CGANVEDHNENGHTPLMEAASAGHVG-VAKILLEYGAGINTHSNEFKE 291
V + T AA G G V + + ++ K
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224
Score = 98.5 bits (246), Expect = 2e-23
Identities = 43/220 (19%), Positives = 70/220 (31%), Gaps = 34/220 (15%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L+ A G+++ V++ + E + +EG + L A Y + L+ ANV
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTE 496
G TPL AAS + L+ GA I A T
Sbjct: 85 SHG-WTPLHCAASCND-------------------------TVICMALVQHGAAIFATTL 118
Query: 497 ETQETALTLA--CCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLELVRYLLDS 551
TA G+ D A +L ++ L A L + + E E + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGE 177
Query: 552 GAQVHAKTQTGDTALTYACENGHTD-VADLLLSYGANLDN 590
V + +T +A +G V +
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217
Score = 85.0 bits (211), Expect = 8e-19
Identities = 40/255 (15%), Positives = 69/255 (27%), Gaps = 37/255 (14%)
Query: 14 VKKLLTEGRSVHETTDE---GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 70
++ +L + S + LL A G E+ Q + + +G T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGI-TALH 59
Query: 71 EAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQ 129
A ++ L + A N N + + L
Sbjct: 60 NAICGAN------------YSIVDFL-------ITAGA-------NVNSPDSHGWTPLHC 93
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTD-EGESLLSLACSA--GYYELAQVLLAMHANVEDRG 186
A S D L+ G ++ TT +G + GY + A L + ++
Sbjct: 94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV-RVLLEC 245
L S+ F + + V + T +A G E V R
Sbjct: 154 SGAV-YALW-DYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211
Query: 246 GANVEDHNENGHTPL 260
V+
Sbjct: 212 FPRVKPQRSKVKHHH 226
Score = 44.9 bits (107), Expect = 3e-05
Identities = 15/79 (18%), Positives = 25/79 (31%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A + V L+T G +V+ G + L A S + L+ A +
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Query: 62 IKGECTPLMEAASSGFGKL 80
+ T + G
Sbjct: 118 LSDGATAFEKCDPYREGYA 136
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 153 bits (389), Expect = 7e-44
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
++ S + L A A G VR LLE GA+ N G P+ G VA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
++LL +GA N + A +G LD + L AGA + + A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 333 DGHVEVAKLLLDSGA 347
GH ++A+ L +
Sbjct: 121 QGHRDIARYLHAATG 135
Score = 149 bits (378), Expect = 2e-42
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+ G + L AA+ G +E VR L+ GAD N + G P+ G V
Sbjct: 3 PGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60
Query: 240 RVLLECGANVEDHNENGHT-PLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLAC 298
+LL GA + T P+ +AA G + +L GA ++ + + + LA
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAE 119
Query: 299 YKGHLDMVRFLLSAGAD 315
+GH D+ R+L +A D
Sbjct: 120 EQGHRDIARYLHAATGD 136
Score = 136 bits (345), Expect = 9e-38
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 522 GANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVA 578
I + L AA G +E VR LL++GA +A + G + G VA
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 579 DLLLSYGANL-----DNSTM-LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACE 632
+LLL +GA T + +AA+ G + + +L + G + A E
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 633 NGHTDVADLLLSYGAN 648
GH D+A L + +
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 132 bits (334), Expect = 2e-36
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Query: 149 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRL 208
+H ++ L+ A + G E + LL A+ G P+ G ++ L
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQ-VMMMGSAQVAEL 62
Query: 209 LINHGADVNGQSSSGNT-PLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAG 267
L+ HGA+ N + T P+ A G + VL GA ++ + G P+ A G
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122
Query: 268 HVGVAKILLEYGA 280
H +A+ L
Sbjct: 123 HRDIARYLHAATG 135
Score = 112 bits (282), Expect = 3e-29
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G V+TV++LL G + G + + G ++A++LL A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
P+ +AA GF++ + +L GA ++ + G P+ A GH + R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Query: 247 AN 248
+
Sbjct: 135 GD 136
Score = 110 bits (279), Expect = 8e-29
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 33/162 (20%)
Query: 431 ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GA 489
+ G + L AA+ G+ ++ L+ GA
Sbjct: 3 PGIHMLGGSSD-AGLATAAARGQ-------------------------VETVRQLLEAGA 36
Query: 490 KINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGHLELV 545
NA + + + G VA+ LL +GA + P+ +AA+EG L+ +
Sbjct: 37 DPNALNRFGR-RPIQVMMMGS-AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL 94
Query: 546 RYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
L +GA++ G + A E GH D+A L + +
Sbjct: 95 VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 87.1 bits (217), Expect = 2e-20
Identities = 27/185 (14%), Positives = 39/185 (21%), Gaps = 83/185 (44%)
Query: 552 GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 611
+H + D L A G + LL GA+
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------------------ 37
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLL 671
+A + G + G VA+LLL +GA
Sbjct: 38 ----PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAE----------------------- 69
Query: 672 DFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDT-ALTYACENGHTDVADLLLS 730
+ T + A G D +L
Sbjct: 70 ------------------------------PNCADPATLTRPVHDAAREGFLDTLVVLHR 99
Query: 731 YGANL 735
GA L
Sbjct: 100 AGARL 104
Score = 68.2 bits (168), Expect = 6e-14
Identities = 30/214 (14%), Positives = 52/214 (24%), Gaps = 79/214 (36%)
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
L A+ G VE + LL++GA
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------------- 37
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 431
+ G + + G ++A++LL A
Sbjct: 38 ----------------------------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA 68
Query: 432 NVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAK 490
P+ +AA G L V+L GA+
Sbjct: 69 EPNCADPATLTRPVHDAAREGF-------------------------LDTLVVLHRAGAR 103
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGAN 524
++ + + LA G D+A +L +
Sbjct: 104 LDVCDAWGR-LPVDLAEEQGHRDIARYLHAATGD 136
Score = 54.0 bits (131), Expect = 6e-09
Identities = 29/194 (14%), Positives = 46/194 (23%), Gaps = 64/194 (32%)
Query: 24 VHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATG 83
+H ++ L+ A + G E + LL A+ G P+ G
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFG-RRPIQVMM---MGSA--- 57
Query: 84 DGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS--LVQACSDGDVKTVKK 141
+V L L A N + + A +G + T+
Sbjct: 58 -------QVAELL-------LLHGA-------EPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 142 LLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 201
L G + G P+ A G
Sbjct: 97 LHRAGARLDVCDAWG----------------------------------RLPVDLAEEQG 122
Query: 202 FIEIVRLLINHGAD 215
+I R L D
Sbjct: 123 HRDIARYLHAATGD 136
Score = 47.1 bits (113), Expect = 1e-06
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A + G V+TV++LL G + G + + G ++A++LL A
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD 74
Query: 62 IKGECTPLMEAASSG 76
P+ +AA G
Sbjct: 75 PATLTRPVHDAAREG 89
Score = 40.9 bits (97), Expect = 2e-04
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 4 QACSDGDVKTVKKLLTEGRSVHETTDEGESL-LSLACSAGYYELAQVLLAMHANVEDRGI 62
Q G + + LL G + + + A G+ + VL A ++
Sbjct: 50 QVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109
Query: 63 KGECTPLMEAASSG 76
G P+ A G
Sbjct: 110 WG-RLPVDLAEEQG 122
Score = 35.9 bits (84), Expect = 0.011
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 56
A +G + T+ L G + G + LA G+ ++A+ L A +
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 160 bits (406), Expect = 2e-43
Identities = 59/426 (13%), Positives = 99/426 (23%), Gaps = 107/426 (25%)
Query: 139 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 198
+ L +++ + LL L + Q+ ++ +GIK E AA
Sbjct: 50 IHIFLPGTKNMEQVR----QLLCLYYAHYNRNAKQLW----SDAHKKGIKSE-VICFVAA 100
Query: 199 SSG---FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE--DHN 253
+G ++ + LL+ V + A GH V+ L E
Sbjct: 101 ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 160
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+ LA GHL ++ L
Sbjct: 161 AENYHAFR----------------------------------LAAENGHLHVLNRLCELA 186
Query: 314 ADQEHKTDEMH--TALMEASMD-GHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSI 370
+ + A A++ GH V LLD A
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA------------------ 228
Query: 371 SYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMH 430
+ G+ + + E D L+ G ++L
Sbjct: 229 -------EIHEFEYGEKYVNPFIARHVNRLKEMHDA----FKLSNPDGVFDL-------- 269
Query: 431 ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAK 490
V L + L + L + + A
Sbjct: 270 --VTKSECLQGFYMLRNLIRRNDEVLL----------------DDIRFLLSIPGIKALAP 311
Query: 491 INAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLD 550
L LA G LL + + L + G L+L L+
Sbjct: 312 TAT-IPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370
Query: 551 SGAQVH 556
H
Sbjct: 371 HHHHHH 376
Score = 151 bits (382), Expect = 3e-40
Identities = 52/355 (14%), Positives = 97/355 (27%), Gaps = 68/355 (19%)
Query: 390 VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 449
+ L +++ + LL L + Q+ ++ +GIK E AA
Sbjct: 50 IHIFLPGTKNMEQVR----QLLCLYYAHYNRNAKQLW----SDAHKKGIKSE-VICFVAA 100
Query: 450 SSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILI-PGAKINAHTEETQETALTLACC 508
+G + L +L+ + E A LA
Sbjct: 101 ITG----------------------CSSALDTLCLLLTSDEIVKVIQAE-NYQAFRLAAE 137
Query: 509 GGFLDVADFLLKNGANIELGA-----STPLMEAAQEGHLELVRYLLDSGAQVHAKTQT-- 561
G L V + L + + AA+ GHL ++ L +
Sbjct: 138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197
Query: 562 GDTALTYAC-ENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKT 620
A +A GH +V + LL L + + + G V + +
Sbjct: 198 NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH--EFEYGEKYVNPFIAR----HVNRL 251
Query: 621 QTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGG 680
+ A + +G D+ ++ L ML + ++ +
Sbjct: 252 KEMHDAFKLSNPDGVFDL----VTKSECLQGFYMLRNLIRRNDEVLLDDIR--------- 298
Query: 681 SLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ + + L A G+ LLLS + L
Sbjct: 299 --------FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 345
Score = 130 bits (329), Expect = 3e-33
Identities = 54/387 (13%), Positives = 103/387 (26%), Gaps = 70/387 (18%)
Query: 234 GHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESA 293
++ + + L N+E + L+ A + AK L S A
Sbjct: 45 SYKEAIHIFLPGTKNMEQVRQ-----LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 99
Query: 294 LTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAY 353
C LD + LL++ + E + A A+ +GH+ V L + + A
Sbjct: 100 AITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158
Query: 354 ARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSL 413
+ + L
Sbjct: 159 IQAE-------------------------------------------------NYHAFRL 169
Query: 414 ACSAGYYELAQVLLAMHANVE--DRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
A G+ + L + + A G +N + +
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229
Query: 472 NDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAST 531
+ G + I + + + A L+ G D+ K+
Sbjct: 230 IHEFEYGEKYVNPFI---ARHVNRLKEMHDAFKLSNPDGVFDLVT---KSECLQGFYMLR 283
Query: 532 PLMEAAQEGHLELVRYL-----LDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
L+ E L+ +R+L + + A + L A G+ LLLS +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Query: 587 --NLDNSTMLIEAAKGGHANVVQLLLD 611
L + GG ++ + L+
Sbjct: 344 VLALTKANNYYINETGGRLDLRAVALE 370
Score = 130 bits (327), Expect = 7e-33
Identities = 50/400 (12%), Positives = 101/400 (25%), Gaps = 74/400 (18%)
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMD-GHVEVAKLLLDS 345
F + + + + L + E L A + ++
Sbjct: 31 QHFISANELSLMTLSYKEAIHIFLPGTKNMEQVR--QLLCLYYAHYNRNAKQLWSDAHKK 88
Query: 346 GAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTD 405
G +S + + CS + T+ LLT V
Sbjct: 89 GIKS---------------------EVICFVAAITGCSSA-LDTLCLLLTSDEIVKVIQA 126
Query: 406 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE-CTPLMEAASSGRQCNLNESVSAY 464
E LA G+ + L + I+ E AA +G ++
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL----HVLN-- 180
Query: 465 ARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQ-ETALTLACCG-GFLDVADFLLKNG 522
+ + + A A G G +V +FLL
Sbjct: 181 ------------------RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222
Query: 523 ANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLL 582
+ + + G + ++ ++ A + +G D+ +
Sbjct: 223 VMLA----YAEIHEFEYGEKYVNPFIARHVNRLKE----MHDAFKLSNPDGVFDL----V 270
Query: 583 SYGANLDNSTMLIEAAKGGHANVVQLL--------LDFPRSVHAKTQTGDTALTYACENG 634
+ L ML + ++ + + + L A G
Sbjct: 271 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330
Query: 635 HTDVADLLLSYGA--NLDNSTMLIEAAKGGHANVVQLLLD 672
+ LLLS + L + GG ++ + L+
Sbjct: 331 NQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370
Score = 106 bits (266), Expect = 6e-25
Identities = 42/356 (11%), Positives = 79/356 (22%), Gaps = 90/356 (25%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ CS + T+ LLT V E LA G+ + L +
Sbjct: 100 AITGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158
Query: 62 IKGE-CTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
I+ E AA +G VL R
Sbjct: 159 IQAENYHAFRLAAENG------------HLHVLNR------------------------- 181
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
L + ++ + + A G++ + LL
Sbjct: 182 ------LCELAPTEATAMIQA------------ENYYAFRWAAVGRGHHNVINFLLDCPV 223
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
+ + G + + H + + + G +V
Sbjct: 224 MLAY--------AEIHEFEYGEKYVNPFIARHVNRLK----EMHDAFKLSNPDGVFDLVT 271
Query: 241 VLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL--------LEYGAGINTHSNEFKES 292
+ G L + + ++ A T +
Sbjct: 272 ---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANE 321
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQ 348
L LA G+ LLS + G +++ + L+
Sbjct: 322 LLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHHH 374
Score = 81.9 bits (202), Expect = 8e-17
Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 34/173 (19%)
Query: 571 ENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYA 630
+ + + L N++ L+ + + L H K + A
Sbjct: 43 TLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS---DAHKKGIKSEVICFVA 99
Query: 631 CENGHTDVAD---LLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSL 682
G + D LLL+ + +N AA+ GH +V+ L
Sbjct: 100 AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC----------- 148
Query: 683 SSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ A A ENGH V + L
Sbjct: 149 ------------ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189
Score = 28.8 bits (64), Expect = 7.9
Identities = 13/111 (11%), Positives = 26/111 (23%), Gaps = 31/111 (27%)
Query: 632 ENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSS 691
+ + + L N++ L+ + + L
Sbjct: 43 TLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLW-------------------- 82
Query: 692 HLCSQGKKSGVHAKTQTGDTALTYACENGHTDVAD---LLLSYGANLRNRT 739
S H K + A G + D LLL+ ++
Sbjct: 83 --------SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 125
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 153 bits (388), Expect = 2e-43
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
+++E L AA+ G +E VR L+ GA+ N +S G P+ G V
Sbjct: 7 SSMEP-----SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVA 60
Query: 240 RVLLECGANVEDHNENGHT-PLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLAC 298
+LL GA + T P+ +AA G + +L GA ++ + + + LA
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAE 119
Query: 299 YKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVA 339
GH D+ R+L +A + +G ++
Sbjct: 120 ELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIP 155
Score = 146 bits (371), Expect = 4e-41
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 519 LKNGANIEL-GASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
++ A + ++ L AA G +E VR LL++GA +A G + G V
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARV 59
Query: 578 ADLLLSYGANL-----DNSTM-LIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYAC 631
A+LLL +GA T + +AA+ G + + +L + + G + A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Query: 632 ENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVV 667
E GH DVA L + S A G +++
Sbjct: 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIP 155
Score = 146 bits (371), Expect = 5e-41
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 3/138 (2%)
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ A + L A A G VR LLE GAN N G P+ G
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ-VMMMGSA 57
Query: 270 GVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALME 329
VA++LL +GA N + A +G LD + L AGA + + +
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 330 ASMDGHVEVAKLLLDSGA 347
A GH +VA+ L +
Sbjct: 118 AEELGHRDVARYLRAAAG 135
Score = 136 bits (345), Expect = 2e-37
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+ L+ A + G E + LL AN G P+ G + LL+ H
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG-RRPIQ-VMMMGSARVAELLLLH 66
Query: 213 GADVNGQSSSGNT-PLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGV 271
GA+ N + T P+ A G + VL GA ++ + G P+ A GH V
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMV 306
A+ L G ++ + +G D+
Sbjct: 127 ARYLRAAAGGTRGSNH------ARIDAAEGPSDIP 155
Score = 126 bits (318), Expect = 7e-34
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 6/146 (4%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L A + G V+ V+ LL G + + G + + G +A++LL A
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCAD 74
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECG 246
P+ +AA GF++ + +L GA ++ + + G P+ A GH V R L
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA 134
Query: 247 ANVEDHNENGHTPLMEAASAGHVGVA 272
G A+ G +
Sbjct: 135 GGT-----RGSNHARIDAAEGPSDIP 155
Score = 117 bits (296), Expect = 6e-31
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL----GASTPLMEAAQEGHLE 543
GA NA + + G VA+ LL +GA + P+ +AA+EG L+
Sbjct: 35 GANPNAPNSY-GRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD 92
Query: 544 LVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHA 603
+ L +GA++ + G + A E GH DVA L + S A G +
Sbjct: 93 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152
Query: 604 NVV 606
++
Sbjct: 153 DIP 155
Score = 62.1 bits (152), Expect = 2e-11
Identities = 31/212 (14%), Positives = 45/212 (21%), Gaps = 65/212 (30%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
+ L+ A + G E + LL AN G P+ G
Sbjct: 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG-RRPIQVMM---MGSA------- 57
Query: 88 ADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGR 147
V L L A RP + A +G + T+ L G
Sbjct: 58 ---RVAELL-------LLHGAEPNCADPATLTRP-----VHDAAREGFLDTLVVLHRAGA 102
Query: 148 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVR 207
+ G P+ A G ++ R
Sbjct: 103 RLDVRDAWG----------------------------------RLPVDLAEELGHRDVAR 128
Query: 208 LLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
L G A G +
Sbjct: 129 YLRAAAGGTRGS-----NHARIDAAEGPSDIP 155
Score = 48.6 bits (117), Expect = 7e-07
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L A + G V+ V+ LL G + + G + + G +A++LL A
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCAD 74
Query: 62 IKGECTPLMEAASSGF 77
P+ +AA GF
Sbjct: 75 PATLTRPVHDAAREGF 90
Score = 41.3 bits (98), Expect = 2e-04
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G + T+ L G + G + LA G+ ++A+ L A
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS---- 140
Query: 65 ECTPLMEAASSG 76
A+ G
Sbjct: 141 --NHARIDAAEG 150
Score = 40.9 bits (97), Expect = 3e-04
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 9 GDVKTVKKLLTEGRSVHETTDEGESL-LSLACSAGYYELAQVLLAMHANVEDRGIKGECT 67
G + + LL G + + + A G+ + VL A ++ R G
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG-RL 113
Query: 68 PLMEAASSG 76
P+ A G
Sbjct: 114 PVDLAEELG 122
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 149 bits (378), Expect = 2e-42
Identities = 59/124 (47%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL AA +G +E+V+LL+ GADVN + +G TPL A GH VV++LLE GA+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
++NG TPL AA GH+ V K+LLE GA +N ++ + L LA GHL++V+ LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 311 SAGA 314
AGA
Sbjct: 122 EAGA 125
Score = 145 bits (369), Expect = 4e-41
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+G TPL A GH VV++LLE GA+V ++NG TPL AA GH+ V K+LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKL 341
+N ++ + L LA GHL++V+ LL AGAD K T L A+ +GH+EV KL
Sbjct: 61 VNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 342 LLDSGA 347
LL++GA
Sbjct: 120 LLEAGA 125
Score = 137 bits (347), Expect = 4e-38
Identities = 57/122 (46%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-- 588
TPL AA+ GHLE+V+ LL++GA V+AK + G T L A NGH +V LLL GA++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 589 ---DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSY 645
+ T L AA+ GH VV+LLL+ V+AK + G T L A NGH +V LLL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Query: 646 GA 647
GA
Sbjct: 124 GA 125
Score = 110 bits (278), Expect = 7e-29
Identities = 45/102 (44%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
GA +NA + T L LA G L+V LL+ GA++ TPL AA+ GHLE+
Sbjct: 25 GADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
V+ LL++GA V+AK + G T L A NGH +V LLL GA
Sbjct: 84 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 107 bits (269), Expect = 1e-27
Identities = 55/150 (36%), Positives = 71/150 (47%), Gaps = 30/150 (20%)
Query: 589 DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
+ T L AA+ GH VV+LLL+ V+AK + G T L A NGH +V LLL GA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 649 L-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVH 703
+ + T L AA+ GH VV+LLL G + V+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL-----------------------EAG--ADVN 95
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGA 733
AK + G T L A NGH +V LLL GA
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 104 bits (262), Expect = 1e-26
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A+V + G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
TPL AA +G +E+V+LL+ GADVN + +G TPL A GH VV++LLE GA
Sbjct: 69 -RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 98.2 bits (246), Expect = 1e-24
Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 52/173 (30%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
NG TPL AA GH+ V K+LLE GA +N ++ + L LA GHL++V+ LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTY 374
D K T L A+ +GH+EV KLLL++GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------------------------- 93
Query: 375 SRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 427
V+ G + L LA G+ E+ ++LL
Sbjct: 94 -------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 88.6 bits (221), Expect = 4e-21
Identities = 45/173 (26%), Positives = 55/173 (31%), Gaps = 81/173 (46%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
G T L A NGH +V LLL GA+ V+AK +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------------------VNAKDK 33
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
G T L A NGH +V LLL GA+
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 60
Query: 682 LSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V+AK + G T L A NGH +V LLL GA+
Sbjct: 61 --------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 80.9 bits (201), Expect = 2e-18
Identities = 45/160 (28%), Positives = 62/160 (38%), Gaps = 52/160 (32%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
L LA GHL++V+ LL AGAD K T L A+ +GH+EV KLLL++GA
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---- 60
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
V+ G + L
Sbjct: 61 -----------------------------------------------VNAKDKNGRTPLH 73
Query: 413 LACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
LA G+ E+ ++LL A+V + G TPL AA +G
Sbjct: 74 LAARNGHLEVVKLLLEAGADVNAKDKNG-RTPLHLAARNG 112
Score = 59.7 bits (146), Expect = 5e-11
Identities = 54/229 (23%), Positives = 76/229 (33%), Gaps = 107/229 (46%)
Query: 325 TALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSD 384
T L A+ +GH+EV KLLL++GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD------------------------------------ 27
Query: 385 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
V+ G + L LA G+ E+ ++LL A+V + G TP
Sbjct: 28 ---------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-RTP 71
Query: 445 LMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALT 504
L AA +G V ++L GA +NA
Sbjct: 72 LHLAARNGH--------------------LEV----VKLLLEAGADVNAKD--------- 98
Query: 505 LACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGA 553
KNG TPL AA+ GHLE+V+ LL++GA
Sbjct: 99 ---------------KNG-------RTPLHLAARNGHLEVVKLLLEAGA 125
Score = 45.0 bits (108), Expect = 6e-06
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A+V + G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 65 ECTPLMEAASSG 76
TPL AA +G
Sbjct: 102 -RTPLHLAARNG 112
Score = 44.3 bits (106), Expect = 1e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A+V + G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 65 ECTPLMEAASSG 76
TPL AA +G
Sbjct: 69 -RTPLHLAARNG 79
Score = 29.2 bits (67), Expect = 1.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL 51
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL
Sbjct: 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 151 bits (384), Expect = 5e-42
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 21/248 (8%)
Query: 186 GIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLEC 245
G A S E+ ++ + T L +AC+ GH +V LL+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
G V D ++ G +PL AASAG + K LL GA +N N+ + L A K ++
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEI 121
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCE 365
LL GA+ + K TA+ A+ G++++ +LL A + P
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTP----- 175
Query: 366 RPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV 425
L AC + V+ K L+T+G S++ E ++ L +A G L
Sbjct: 176 ------------LHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILK 221
Query: 426 LLAMHANV 433
LA
Sbjct: 222 RLAEGEEA 229
Score = 150 bits (381), Expect = 1e-41
Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
+ +LA S EL + +LA + T L A S+G EIV L+ G
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP 65
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
VN + +G +PL A + G + +V+ LL GA+V N+NG TPL AAS +A +L
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 276 LEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGH 335
LE GA + + + +A+ A KG+L MV LL A + E +T L A +
Sbjct: 126 LEGGANPDA-KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 336 VEVAKLLLDSGAQ 348
VE AK L+ GA
Sbjct: 185 VEEAKFLVTQGAS 197
Score = 144 bits (364), Expect = 3e-39
Identities = 50/247 (20%), Positives = 86/247 (34%), Gaps = 40/247 (16%)
Query: 501 TALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHA 557
LA G ++ + +L + + T L A GH E+V +LL G V+
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 558 KTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDF 612
K G + L A G ++ LL GA++ + T L AA + +LL+
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 613 PRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVV 667
+ AK TA+ A G+ + +LL Y A+ + +T L A
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 668 QLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADL 727
+ L+ + + ++ + + T L A G +
Sbjct: 189 KFLVT-------------------------QGASIYIENKEEKTPLQVA--KGGLGLILK 221
Query: 728 LLSYGAN 734
L+ G
Sbjct: 222 RLAEGEE 228
Score = 122 bits (308), Expect = 9e-32
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 4/186 (2%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
ACS G + V+ LL G V++ D G S L +A SAG E+ + LL A+V G
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV 249
TPL AAS EI +L+ GA+ + + T + A A G+ +V +LL A+
Sbjct: 107 C-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165
Query: 250 EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
+ G+TPL A V AK L+ GA I N+ +++ L +A KG L ++
Sbjct: 166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI-ENKEEKTPLQVA--KGGLGLILKR 222
Query: 310 LSAGAD 315
L+ G +
Sbjct: 223 LAEGEE 228
Score = 120 bits (302), Expect = 6e-31
Identities = 55/253 (21%), Positives = 88/253 (34%), Gaps = 38/253 (15%)
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR 466
+ +LA S EL + +LA + T L A S+G E V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDS-RTALHWACSAGHT----EIVE---- 57
Query: 467 HDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 525
L+ G +N + + L +A G ++ LL GA++
Sbjct: 58 -----------------FLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 526 ELG---ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLL 582
TPL AA + E+ LL+ GA AK TA+ A G+ + +LL
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 583 SYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTD 637
Y A+ + +T L A + L+ S++ + + T L A G
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLG 217
Query: 638 VADLLLSYGANLD 650
+ L+ G
Sbjct: 218 LILKRLAEGEEAS 230
Score = 114 bits (287), Expect = 7e-29
Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 31/254 (12%)
Query: 31 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADP 90
+ +LA S EL + +LA + T L A S+G ++
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDS-RTALHWACSAGHTEIV--------- 56
Query: 91 EVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRSV 149
E L L N + S L A S G + VK LL +G V
Sbjct: 57 EFL----------LQLGV-------PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
Query: 150 HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
+ G + L A S +E+A +LL AN + + T + AA+ G +++V +L
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHV 269
+ + A N Q + GNTPL AC + L+ GA++ N+ TPL A G +
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216
Query: 270 GVAKILLEYGAGIN 283
G+ L G +
Sbjct: 217 GLILKRLAEGEEAS 230
Score = 111 bits (280), Expect = 5e-28
Identities = 63/301 (20%), Positives = 95/301 (31%), Gaps = 82/301 (27%)
Query: 292 SALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVS 351
LA ++ +L+ + + TAL A GH E+ + LL G
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--- 65
Query: 352 AYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLL 411
V++ D G S L
Sbjct: 66 ------------------------------------------------VNDKDDAGWSPL 77
Query: 412 SLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFP 471
+A SAG E+ + LL A+V G TPL AAS R
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRH----------------- 119
Query: 472 NDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG--- 528
A ++L GA +A TA+ A G L + LL A+ +
Sbjct: 120 -------EIAVMLLEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 529 ASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 588
+TPL A E +E ++L+ GA ++ + + T L A G + L+ G
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229
Query: 589 D 589
Sbjct: 230 S 230
Score = 105 bits (264), Expect = 8e-26
Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 22/198 (11%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 616
A ++ + +L+ + D+ T L A GH +V+ LL V
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 617 HAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLL 671
+ K G + L A G ++ LL GA++ + T L AA + +LL
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 672 ----------DFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGH 721
+ + + + + + L + + + G+T L AC+
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--ASTNIQDTEGNTPLHLACDEER 184
Query: 722 TDVADLLLSYGANLRNRT 739
+ A L++ GA++
Sbjct: 185 VEEAKFLVTQGASIYIEN 202
Score = 103 bits (258), Expect = 4e-25
Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 31/246 (12%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A S + +++L + T + + L ACSAG+ E+ + LL + V D+ G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 65 ECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNE 124
+PL AAS+G + A L + + N QN
Sbjct: 74 W-SPLHIAASAG--------------------------XDEIVKALLVKGAHVNAVNQNG 106
Query: 125 RS-LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVE 183
+ L A S + LL G + + + A + G ++ +LL A+
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 184 DRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLL 243
+ +G TPL A +E + L+ GA + ++ TPL A G ++ L
Sbjct: 167 IQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRL 223
Query: 244 ECGANV 249
G
Sbjct: 224 AEGEEA 229
Score = 88.8 bits (220), Expect = 5e-20
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 17/167 (10%)
Query: 587 NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ N + A G + + +L Q TAL +AC GHT++ + LL G
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63
Query: 647 ANL-----DNSTMLIEAAKGGHANVVQLLL----------DFPRSVIGGSLSSPSDDSSS 691
+ + L AA G +V+ LL + + + S + +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 692 HLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRNR 738
L G + AK TA+ A G+ + +LL Y A+ +
Sbjct: 124 MLLEGG--ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 146 bits (372), Expect = 3e-40
Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 27/213 (12%)
Query: 130 ACSDGDVKTVKKLL-TEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGI- 187
A + DV+ + KLL EG VH+ GE+ L +A E A VL+ + +
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 188 ---KGECTPLMEAASSGFIEIVRLLINHGADVN-------------GQSSSGNTPLMYAC 231
T L A + + +VR L+ GA V+ G PL +A
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Query: 232 AGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA----KILLEYGAGIN---- 283
G E +VR+L+E GA++ + G+T L + A +LL Y G +
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189
Query: 284 -THSNEFKESALTLACYKGHLDMVRFLLSAGAD 315
N + LA +G++ M + L+
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Score = 145 bits (368), Expect = 8e-40
Identities = 47/254 (18%), Positives = 85/254 (33%), Gaps = 54/254 (21%)
Query: 500 ETALTLACCGGFLD-VADFLLKNGANI----ELGASTPLMEAAQEGHLELVRYLLDSGAQ 554
E+ L LA + ++ L G + +G T L AA +LE L+++ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG-ETALHIAALYDNLEAAMVLMEAAPE 62
Query: 555 V-----HAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLL 609
+ ++ G TAL A N + ++ LL+ GA++ A G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS------ARATGS-------- 108
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHA 664
F H G+ L++A G ++ LL+ +GA++ +T+L +
Sbjct: 109 -VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK 167
Query: 665 NVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQG----KKSGVHAKTQTGDTALTYACENG 720
+ + L S KS G T A G
Sbjct: 168 TFACQMYNL-------------------LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208
Query: 721 HTDVADLLLSYGAN 734
+ + L+ +
Sbjct: 209 NIVMFQHLMQKRKH 222
Score = 139 bits (352), Expect = 1e-37
Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 34/238 (14%)
Query: 192 TPLMEAASSGFIEIV-RLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
+PL+ AA ++ + +LL G +V+ + + G T L A + VL+E +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 251 DHNEN-----GHTPLMEAASAGHVGVAKILLEYGAGIN------------THSNEFKESA 293
G T L A +V + + LL GA ++ + + E
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 294 LTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVA----KLLLDSGAQS 349
L+ A G ++VR L+ GAD + +T L + + A LLL
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG- 183
Query: 350 VSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEG 407
+ K + + A +G++ + L+ + + +
Sbjct: 184 ----------DHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 123 bits (312), Expect = 3e-32
Identities = 53/270 (19%), Positives = 86/270 (31%), Gaps = 74/270 (27%)
Query: 407 GESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYA 465
ES L LA + LL V RG GE T L AA
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDN------------ 49
Query: 466 RHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQ----ETALTLACCGGFLDVADFLLK 520
L+A+++L+ ++ ++ +TAL +A +++ LL
Sbjct: 50 -------------LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 521 NGANI----------------ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDT 564
GA++ PL AA G E+VR L++ GA + A+ G+T
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 565 ALTYACENGHTDVA----DLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKT 620
L + A +LLLSY ++ +
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN--------------------- 195
Query: 621 QTGDTALTYACENGHTDVADLLLSYGANLD 650
G T A G+ + L+ ++
Sbjct: 196 -QGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224
Score = 115 bits (290), Expect = 3e-29
Identities = 45/181 (24%), Positives = 65/181 (35%), Gaps = 27/181 (14%)
Query: 130 ACSDGDVKTVKKLLTEG-----RSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 184
A +++ L+ + EG++ L +A L + LLA A+V
Sbjct: 44 AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103
Query: 185 RGIKGEC------------TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACA 232
R PL AA G EIVRLLI HGAD+ Q S GNT L
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Query: 233 GGHEAVVR----VLLECGANV------EDHNENGHTPLMEAASAGHVGVAKILLEYGAGI 282
++ +LL N G TP A G++ + + L++ I
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223
Query: 283 N 283
Sbjct: 224 A 224
Score = 108 bits (272), Expect = 9e-27
Identities = 49/313 (15%), Positives = 89/313 (28%), Gaps = 106/313 (33%)
Query: 291 ESALTLACYKGHLDMV-RFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQS 349
ES L LA + + + + L G + + TAL A++ ++E A +L+++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP-- 61
Query: 350 VSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGES 409
++ + EG++
Sbjct: 62 ------------------------------------ELVF--------EPMTSELYEGQT 77
Query: 410 LLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDF 469
L +A L + LLA A+V R
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSAR--------------------------------- 104
Query: 470 FPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA 529
SV + ++ G E L+ A C G ++ L+++GA+I
Sbjct: 105 --ATGSVFHYRPHNLIYYG-----------EHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Query: 530 S---TPLMEAAQEGHLELVR----YLLDSGAQVHAKTQT------GDTALTYACENGHTD 576
S T L + + LL H K+ G T A G+
Sbjct: 152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211
Query: 577 VADLLLSYGANLD 589
+ L+ ++
Sbjct: 212 MFQHLMQKRKHIA 224
Score = 108 bits (271), Expect = 9e-27
Identities = 48/281 (17%), Positives = 86/281 (30%), Gaps = 71/281 (25%)
Query: 256 GHTPLMEAASAGHVG-VAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+PL+ AA V ++K+L G ++ E+AL +A +L+ L+ A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 315 D-----QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSS 369
+ + E TAL A ++ +V + + LL GA
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA---------------------- 99
Query: 370 ISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAM 429
V H GE LS A G E+ ++L+
Sbjct: 100 ----------------SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143
Query: 430 HANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGA 489
A++ + G T L +K+ +++L
Sbjct: 144 GADIRAQDSLGN-TVLHILILQ--------------------PNKTFACQMYNLLLSYDG 182
Query: 490 KINAHTEETQ-----ETALTLACCGGFLDVADFLLKNGANI 525
+ + E T LA G + + L++ +I
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223
Score = 90.0 bits (224), Expect = 2e-20
Identities = 51/252 (20%), Positives = 82/252 (32%), Gaps = 48/252 (19%)
Query: 31 GESLLSLACSAGYYELAQVLLAMH-ANVEDRGIKGECTPLMEAASSGFGKLATGDGKLAD 89
ES L LA + LL V RG GE T L AA + A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAA-------- 53
Query: 90 PEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRS 148
VL ++ A + ++ L A + +V V+ LL G S
Sbjct: 54 -MVL----------MEAAPELVFEPMTS--ELYEGQTALHIAVINQNVNLVRALLARGAS 100
Query: 149 VHE-------------TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
V GE LS A G E+ ++L+ A++ + G T L
Sbjct: 101 VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLH 159
Query: 196 EAASSGFIEIVR----LLINHGADVNGQSSS------GNTPLMYACAGGHEAVVRVLLEC 245
LL+++ + +S G TP A G+ + + L++
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Query: 246 GANVEDHNENGH 257
++ + + H
Sbjct: 220 RKHIAAAHHHHH 231
Score = 53.0 bits (128), Expect = 7e-08
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 54/116 (46%)
Query: 623 GDTALTYACENGHTD-VADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
++ L A + ++ LL G
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCE--------------------------------- 29
Query: 682 LSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRN 737
VH + G+TAL A + + A +L+ L
Sbjct: 30 --------------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Score = 33.3 bits (77), Expect = 0.20
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHE-------------TTDEGESLLSLACSAGYYELAQVLL 51
A + +V V+ LL G SV GE LS A G E+ ++L+
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 52 AMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKL 87
A++ + G T L A L
Sbjct: 142 EHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNL 176
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 141 bits (359), Expect = 1e-39
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVA 272
G D + G T L A G V LL+ G++ + G TPL EA + GH+ V
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 273 KILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
++LL++ A +NT + +S L A GH+D+V+ LLS GA + +
Sbjct: 60 ELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118
Query: 333 DGHVEVAKLLLDSGAQSVS 351
+ + L + + S S
Sbjct: 119 ESMKSLLLLPEKNESSSAS 137
Score = 139 bits (353), Expect = 6e-39
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
T L A+ G I V L+ +G+D N + +G TPL AC GH VV +LL+ A V
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLL 310
+PL +AA GHV + K+LL YGA N N F + + ++
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPE 129
Query: 311 SAGAD 315
+
Sbjct: 130 KNESS 134
Score = 134 bits (340), Expect = 4e-37
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 522 GANI---ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVA 578
G + G T L A+ +G + V YLL +G+ + K G T L AC +GH V
Sbjct: 1 GIDPFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 579 DLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACEN 633
+LLL + A + N + L +AAK GH ++V+LLL + S +A G + Y +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 634 GHTDVADLLLSYGAN 648
+ L ++
Sbjct: 120 SMKSLLLLPEKNESS 134
Score = 131 bits (333), Expect = 4e-36
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 152 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLIN 211
T GE+LL +A G + LL ++ + G TPL EA + G +++V LL+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVELLLQ 64
Query: 212 HGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGV 271
H A VN ++PL A GH +V++LL GA+ N G P+ +
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Query: 272 AKILLEYGA 280
+ + +
Sbjct: 125 LLLPEKNES 133
Score = 106 bits (267), Expect = 3e-27
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
G+ N T L AC G L V + LL++ A + +PL +AA+ GH+++
Sbjct: 33 GSDPNVKDHA-GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
V+ LL GA +A G + Y + + L ++
Sbjct: 92 VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 89.4 bits (223), Expect = 2e-21
Identities = 37/183 (20%), Positives = 50/183 (27%), Gaps = 82/183 (44%)
Query: 552 GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLD 611
G G+T L A G + LL G++
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------------------------ 35
Query: 612 FPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLL 671
+ K G T L AC +GH V +LLL + A
Sbjct: 36 ----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----------------------- 68
Query: 672 DFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSY 731
V+ D+ L A +NGH D+ LLLSY
Sbjct: 69 ------------------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 732 GAN 734
GA+
Sbjct: 99 GAS 101
Score = 69.4 bits (171), Expect = 3e-14
Identities = 36/174 (20%), Positives = 54/174 (31%), Gaps = 54/174 (31%)
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEV 338
G T N E+ L +A KG + V +LL G+D K T L EA GH
Sbjct: 1 GIDPFT--NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH--- 55
Query: 339 AKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGR 398
+K V+ LL
Sbjct: 56 ------------------------------------------------LKVVELLLQHKA 67
Query: 399 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
V+ T + +S L A G+ ++ ++LL+ A+ I G P+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGL-RPVDYTDDES 120
Score = 67.4 bits (166), Expect = 1e-13
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 28/145 (19%)
Query: 381 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 440
A GD+ +V+ LL G + G + L AC+ G+ ++ ++LL A V G +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 441 ECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTEETQ 499
+PL +AA +G + +L+ GA NA
Sbjct: 77 -DSPLHDAAKNGH-------------------------VDIVKLLLSYGASRNAVNIF-G 109
Query: 500 ETALTLACCGGFLDVADFLLKNGAN 524
+ + KN ++
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESS 134
Score = 56.7 bits (138), Expect = 7e-10
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A GD+ +V+ LL G + G + L AC+ G+ ++ ++LL A V G +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 65 ECTPLMEAASSG 76
+PL +AA +G
Sbjct: 77 -DSPLHDAAKNG 87
Score = 46.3 bits (111), Expect = 3e-06
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
AC+ G +K V+ LL V+ T + +S L A G+ ++ ++LL+ A+ I G
Sbjct: 50 ACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Query: 65 ECTPLMEAASSG 76
P+
Sbjct: 110 L-RPVDYTDDES 120
Score = 44.7 bits (107), Expect = 1e-05
Identities = 36/190 (18%), Positives = 53/190 (27%), Gaps = 62/190 (32%)
Query: 27 TTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGK 86
T GE+LL +A G + LL ++ + G TPL EA + G K+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVV----- 59
Query: 87 LADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTE 145
E+L L A N S L A +G V VK LL+
Sbjct: 60 ----ELL----------LQHKA-------LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Query: 146 GRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEI 205
G S + G P+ +
Sbjct: 99 GASRNAVNIFGL----------------------------------RPVDYTDDESMKSL 124
Query: 206 VRLLINHGAD 215
+ L + +
Sbjct: 125 LLLPEKNESS 134
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 141 bits (356), Expect = 7e-38
Identities = 56/274 (20%), Positives = 90/274 (32%), Gaps = 57/274 (20%)
Query: 123 NERSLVQACSDGDVKTVKKLLTEGRS--------VHETTDEGESLLSLA---CSAGYYEL 171
+ L S G + + LL R + G++ L A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 172 AQVLLA-----------MHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQS 220
LL ++A D +G + L A ++ V+LL+ +GADV+ ++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGH-SALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 221 SS-------------GNTPLMYACAGGHEAVVRVLLECG---ANVEDHNENGHTPLMEAA 264
G PL A VV LLE A++E + G+T L
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 265 SAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMH 324
N + SAL + Y G L M L +E +
Sbjct: 181 MIAD------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222
Query: 325 TALMEASMDGHVEVAKLLLDSGAQSVSAYARHDF 358
T L A+ +G +E+ + +L +A+ H
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256
Score = 121 bits (304), Expect = 6e-31
Identities = 49/295 (16%), Positives = 85/295 (28%), Gaps = 68/295 (23%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
L S G + + LL E L + +
Sbjct: 4 DRLFSVVSRGVPEELTGLL-------------EYLRWNSKYLT------------DSAYT 38
Query: 436 RGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHT 495
G G+ T LM+A + Q +N + + D + + A+
Sbjct: 39 EGSTGK-TCLMKAVLNL-QDGVNACIMPLLQIDKDSGN---------PKPLVNAQCTDEF 87
Query: 496 EETQETALTLACCGGFLDVADFLLKNGANIELGAS----------------TPLMEAAQE 539
+ +AL +A L L++NGA++ L A PL AA
Sbjct: 88 YQ-GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146
Query: 540 GHLELVRYLLDSG---AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIE 596
++V YLL++ A + A G+T L ++ L+
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS------------PENSALVI 194
Query: 597 AAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 651
G + L + G T L A + G ++ +L +
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 114 bits (286), Expect = 2e-28
Identities = 41/239 (17%), Positives = 62/239 (25%), Gaps = 72/239 (30%)
Query: 531 TPLMEAA---QEGHLELVRYLLDSG-----------AQVHAKTQTGDTALTYACENGHTD 576
T LM+A Q+G + LL AQ + G +AL A E
Sbjct: 45 TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQ 104
Query: 577 VADLLLSYGANLD------------------NSTMLIEAAKGGHANVVQLLLDFPR---S 615
LL+ GA++ L AA +VV LL+ P S
Sbjct: 105 CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164
Query: 616 VHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPR 675
+ A G+T L ++ L+ G + L
Sbjct: 165 LEATDSLGNTVLHALVMIADNS------------PENSALVIHMYDGLLQMGARLCP--- 209
Query: 676 SVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
G T L A + G ++ +L +
Sbjct: 210 ----------------------TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 103 bits (259), Expect = 5e-25
Identities = 40/236 (16%), Positives = 63/236 (26%), Gaps = 56/236 (23%)
Query: 531 TPLMEAAQEGHLELVRYLLDS--------GAQVHAKTQTGDTALTYA---CENGHTDVAD 579
L G E + LL+ + + TG T L A ++G
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 580 LLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVA 639
LL + N L+ A + G +AL A E
Sbjct: 64 PLLQIDKDSGNPKPLVNA-----------------QCTDEFYQGHSALHIAIEKRSLQCV 106
Query: 640 DLLLSYGANLD------------------NSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
LL+ GA++ L AA +VV LL+ S
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE--NPHQPAS 164
Query: 682 LSSPSDDSSS--HLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
L + ++ H + A ++AL +G + L
Sbjct: 165 LEATDSLGNTVLHALV------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214
Score = 99.1 bits (247), Expect = 2e-23
Identities = 59/358 (16%), Positives = 88/358 (24%), Gaps = 121/358 (33%)
Query: 223 GNTPLMYACAGGHEAVVRVLLE--------CGANVEDHNENGHTPLMEAA---SAGHVGV 271
L + G + LLE + G T LM+A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
LL+ D A + + H+AL A
Sbjct: 62 IMPLLQIDK-----------------------DSGNPKPLVNAQCTDEFYQGHSALHIAI 98
Query: 332 MDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVK 391
++ KLL+++GA V A FF
Sbjct: 99 EKRSLQCVKLLVENGA-DVHLRACGRFFQ------------------------------- 126
Query: 392 KLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLL---AMHANVEDRGIKGECTPLMEA 448
+ GE LSLA +++ LL A++E G T L
Sbjct: 127 ------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG-NTVLHAL 179
Query: 449 ASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACC 508
+ A +AL +
Sbjct: 180 V-----------------------------------------MIADNSPEN-SALVIHMY 197
Query: 509 GGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGD 563
G L + L E+ TPL AA+EG +E+ R++L A
Sbjct: 198 DGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 92.5 bits (230), Expect = 4e-21
Identities = 51/288 (17%), Positives = 78/288 (27%), Gaps = 70/288 (24%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L S G + + LL E L + + G
Sbjct: 6 LFSVVSRGVPEELTGLL-------------EYLRWNSKYLT------------DSAYTEG 40
Query: 62 IKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRP 121
G+ T LM+A L DG + L + D
Sbjct: 41 STGK-TCLMKAV------LNLQDGVN---ACIMPL---LQIDKDSGNPKPLVNAQCTDEF 87
Query: 122 QNERS-LVQACSDGDVKTVKKLLTEGRSVHETTDE-------------GESLLSLACSAG 167
S L A ++ VK L+ G VH GE LSLA
Sbjct: 88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147
Query: 168 YYELAQVLL------------------AMHANVEDRGIKGECTPLMEAASSGFIEIVRLL 209
+++ LL +HA V E + L+ G +++ L
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 207
Query: 210 INHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGH 257
+ G TPL A G + R +L+ + + + H
Sbjct: 208 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 59.0 bits (143), Expect = 8e-10
Identities = 25/157 (15%), Positives = 40/157 (25%), Gaps = 53/157 (33%)
Query: 590 NSTMLIEAAKGGHANVVQLLLDFPRS--------VHAKTQTGDTALTYA---CENGHTDV 638
+ L G + LL++ R + + TG T L A ++G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 639 ADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGK 698
LL + N L+ A
Sbjct: 62 IMPLLQIDKDSGNPKPLVNA---------------------------------------- 81
Query: 699 KSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ G +AL A E LL+ GA++
Sbjct: 82 --QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116
Score = 38.2 bits (89), Expect = 0.006
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 24/92 (26%)
Query: 651 NSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSG--VHAKTQT 708
+ L G + LL+ +L K + + T
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLE-------------------YLRWNSKYLTDSAYTEGST 42
Query: 709 GDTALTYA---CENGHTDVADLLLSYGANLRN 737
G T L A ++G LL + N
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGN 74
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 134 bits (340), Expect = 3e-37
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 221 SSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGA 280
S + M+A G V+ + G +V E G PL AA G + + + LL GA
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Query: 281 GINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
IN ++ + L A Y+GH+ V+ LLS GAD+ K + TA + +
Sbjct: 65 DINA-PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 133 bits (338), Expect = 5e-37
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
M A +G ++ V+ + G DVN G PL YA G ++ LL GA++
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVR 307
+++ TPL+ A GHV K+LL GA +A + +++
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV-KGPDGLTAFEATDNQAIKALLQ 123
Score = 122 bits (309), Expect = 4e-33
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 530 STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANL- 588
M A + G L+ V+ + G V+ + G L YA + G ++ + LL GA++
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 589 ----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDV 638
+ T L+ A GH + V+LLL K G TA +
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 122 bits (309), Expect = 5e-33
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
+ A G + + +A +V G PL AA G +EI+ L+ GAD
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGG-RKPLHYAADCGQLEILEFLLLKGAD 65
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAK 273
+N TPL+ A GH + V++LL GA+ +G T + + +
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 99.4 bits (249), Expect = 7e-25
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
+ A +GD+ VK + +G V+ T + G L A G E+ + LL A++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVR 240
TPL+ A G + V+LL++ GAD + G T +A+++
Sbjct: 71 KHH-ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 95.5 bits (239), Expect = 1e-23
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELG---ASTPLMEAAQEGHLEL 544
G +N E L A G L++ +FLL GA+I TPL+ A EGH+
Sbjct: 30 GEDVNRTLEG-GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
V+ LL GA K G TA +
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 94.4 bits (236), Expect = 3e-23
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 30/143 (20%)
Query: 587 NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ A K G + V+ + V+ + G L YA + G ++ + LL G
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 647 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSG 701
A++ + T L+ A GH + V+LLL S+G +
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLL-----------------------SKG--AD 98
Query: 702 VHAKTQTGDTALTYACENGHTDV 724
K G TA +
Sbjct: 99 KTVKGPDGLTAFEATDNQAIKAL 121
Score = 85.9 bits (214), Expect = 3e-20
Identities = 28/173 (16%), Positives = 44/173 (25%), Gaps = 81/173 (46%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
D +A +NG D ++ G + V+ +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGED----------------------------VNRTLE 38
Query: 622 TGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGS 681
G L YA + G ++ + LL GA+
Sbjct: 39 GGRKPLHYAADCGQLEILEFLLLKGAD--------------------------------- 65
Query: 682 LSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
++A + T L A GH LLLS GA+
Sbjct: 66 --------------------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 75.5 bits (187), Expect = 1e-16
Identities = 24/166 (14%), Positives = 43/166 (25%), Gaps = 52/166 (31%)
Query: 287 NEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSG 346
+ A G LD V+ ++ G D + L A+ G +E+ + LL G
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 347 AQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDE 406
A ++
Sbjct: 64 AD---------------------------------------------------INAPDKH 72
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 452
+ L A G+ ++LL+ A+ +G G T +
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG-LTAFEATDNQA 117
Score = 60.9 bits (149), Expect = 2e-11
Identities = 28/172 (16%), Positives = 45/172 (26%), Gaps = 62/172 (36%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
+ A +GD+ VK + +G V+ T + G L A G E+ + LL A++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEE 497
TPL+ A G H
Sbjct: 71 KHH-ITPLLSAVYEG-----------------------------------------HVS- 87
Query: 498 TQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVR 546
LL GA+ + T + L++
Sbjct: 88 ----------------CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 49.7 bits (120), Expect = 2e-07
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
+ A +GD+ VK + +G V+ T + G L A G E+ + LL A++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 62 IKGECTPLMEAASSG 76
TPL+ A G
Sbjct: 71 KHH-ITPLLSAVYEG 84
Score = 42.4 bits (101), Expect = 6e-05
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G ++ ++ LL +G ++ + L A G+ ++LL+ A+ +G G
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 65 ECTPLMEAASSG 76
T +
Sbjct: 107 -LTAFEATDNQA 117
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 134 bits (341), Expect = 4e-37
Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 192 TPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVED 251
L+EAA +G + VR+L+ +GADVN + G TPL A A GH +V VLL+ GA+V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ G TPL AA GH+ +A++LL++GA +N ++F ++A ++ G+ D+ L
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 134 bits (339), Expect = 6e-37
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 515 ADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGH 574
+ +G+++ L+EAA+ G + VR L+ +GA V+AK + G T L A +GH
Sbjct: 4 SHHHHHHGSDLG----KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 575 TDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTY 629
++ ++LL GA++ T L AA GH + ++LL V+A+ + G TA
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 630 ACENGHTDVADLLLSY 645
+ NG+ D+A++L
Sbjct: 120 SIGNGNEDLAEILQKL 135
Score = 131 bits (333), Expect = 4e-36
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH 268
+HG+D L+ A G + VR+L+ GA+V +E G TPL A + GH
Sbjct: 7 HHHHGSD-------LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 269 VGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALM 328
+ + ++LL+ GA +N + + L LA + GHL++ LL GAD + TA
Sbjct: 60 LEIVEVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 329 EASMDGHVEVAKLLL 343
+ +G+ ++A++L
Sbjct: 119 ISIGNGNEDLAEILQ 133
Score = 117 bits (296), Expect = 4e-31
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQ 219
L A AG + ++L+A A+V + G TPL A + G +EIV +L+ +GADVN
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 220 SSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEY 278
+ G TPL A GH + VLL+ GA+V ++ G T + G+ +A+IL +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 104 bits (261), Expect = 2e-26
Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 58/175 (33%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
L A G D +L++ GA+ V+AK +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGAD----------------------------VNAKDE 45
Query: 622 TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRS 676
G T L A +GH ++ ++LL GA++ T L AA GH + ++LL
Sbjct: 46 YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL----- 100
Query: 677 VIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSY 731
G + V+A+ + G TA + NG+ D+A++L
Sbjct: 101 ------------------KHG--ADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 102 bits (257), Expect = 8e-26
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 246 GANV-EDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD 304
G++ H + L+EAA AG +IL+ GA +N +E+ + L LA GHL+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLE 61
Query: 305 MVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+V LL GAD T L A+ GH+E+A++LL GA
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Score = 98.6 bits (247), Expect = 1e-24
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIE---LGASTPLMEAAQEGHLEL 544
GA +NA E T L LA G L++ + LLKNGA++ TPL AA GHLE+
Sbjct: 37 GADVNAKDEY-GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSY 584
LL GA V+A+ + G TA + NG+ D+A++L
Sbjct: 96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 95.5 bits (239), Expect = 2e-23
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 127 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 186
L++A G V+ L+ G V+ + G + L LA + G+ E+ +VLL A+V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 187 IKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLE 244
G TPL AA G +EI +L+ HGADVN Q G T + G+E + +L +
Sbjct: 78 AIGF-TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 72.0 bits (178), Expect = 3e-15
Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 60/182 (32%)
Query: 272 AKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEAS 331
+ +G+ + L A G D VR L++ GAD K + T L A+
Sbjct: 4 SHHHHHHGSDLGK--------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLAT 55
Query: 332 MDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVK 391
GH+E+ ++LL +GA
Sbjct: 56 AHGHLEIVEVLLKNGA-------------------------------------------- 71
Query: 392 KLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASS 451
V+ G + L LA G+ E+A+VLL A+V + G+ T + +
Sbjct: 72 -------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK-TAFDISIGN 123
Query: 452 GR 453
G
Sbjct: 124 GN 125
Score = 59.3 bits (145), Expect = 8e-11
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 27/96 (28%)
Query: 639 ADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGK 698
+ +G++L L+EAA+ G + V++L+ + G
Sbjct: 4 SHHHHHHGSDLG--KKLLEAARAGQDDEVRILM-----------------------ANGA 38
Query: 699 KSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
V+AK + G T L A +GH ++ ++LL GA+
Sbjct: 39 D--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Score = 49.3 bits (119), Expect = 3e-07
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 28/144 (19%)
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
L++A G V+ L+ G V+ + G + L LA + G+ E+ +VLL A+V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 438 IKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP-GAKINAHTE 496
G TPL AA G E +L+ GA +NA +
Sbjct: 78 AIGF-TPLHLAAFIGHL----EIAE---------------------VLLKHGADVNAQDK 111
Query: 497 ETQETALTLACCGGFLDVADFLLK 520
+ TA ++ G D+A+ L K
Sbjct: 112 FGK-TAFDISIGNGNEDLAEILQK 134
Score = 44.3 bits (106), Expect = 2e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
L++A G V+ L+ G V+ + G + L LA + G+ E+ +VLL A+V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 62 IKGECTPLMEAASSG 76
G TPL AA G
Sbjct: 78 AIGF-TPLHLAAFIG 91
Score = 40.4 bits (96), Expect = 3e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A + G ++ V+ LL G V+ G + L LA G+ E+A+VLL A+V + G
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 65 ECTPLMEAASSG 76
+ T + +G
Sbjct: 114 K-TAFDISIGNG 124
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 134 bits (339), Expect = 2e-36
Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 16/182 (8%)
Query: 155 EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGE--CTPLMEAASSGFIEIVRLLINH 212
+S A G YE L ++ +K L +I LIN
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAV------VRVLLECGANVEDHNENGHTPLMEAASA 266
GAD+ ++ G T GG + ++ LE GA++ + + +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 267 GHVGVAK-------ILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
V + I + G + +++ +AL ++ + K
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Query: 320 TD 321
+
Sbjct: 184 EN 185
Score = 133 bits (337), Expect = 4e-36
Identities = 30/176 (17%), Positives = 49/176 (27%), Gaps = 17/176 (9%)
Query: 188 KGECTPLMEAASSGFIEIVRLLINHGADV---NGQSSSGNTPLMYACAGGHEAVVRVLLE 244
E + AA G E L G + +S+ L + L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 245 CGANVEDHNENGHTPLMEAASAGH------VGVAKILLEYGAGINTHSNEFKESALTLAC 298
GA+++ + G T G + KI LE GA I + + +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNI 122
Query: 299 YKGHLDMVR-------FLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
+ +D +G K TAL K++ D
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 120 bits (303), Expect = 1e-31
Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 24/177 (13%)
Query: 498 TQETALTLACCGGFLDVADFLLKNGANIEL--GASTPLMEA----AQEGHLELVRYLLDS 551
++ ++ A G + L + G + S L + E ++ +L++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 552 GAQVHAKTQTGDTALTYACENGHTDVAD------LLLSYGANL-----DNSTMLIEAAKG 600
GA + ++T+ G T + G D+ + L GA++ ++ +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 601 GH------ANVVQLLLDFPRS-VHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 650
+ +L+ + K + G TAL + ++ Y +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 114 bits (286), Expect = 3e-29
Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 60/219 (27%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQV---HAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
+ AA G E L + G + K+ L + ++ L++ GA+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 588 LDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD------L 641
+ ++T+ G T + G D+ +
Sbjct: 68 ----------------------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKI 99
Query: 642 LLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQ 696
L GA++ ++ + + +++ + S
Sbjct: 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP-----LYKLIFSQSGLQ-------- 146
Query: 697 GKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ K + G TAL + ++ Y
Sbjct: 147 -----LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Score = 94.7 bits (236), Expect = 1e-22
Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 14/139 (10%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY------YELAQVLLAMHANVE 183
+ K L+ +G + T EG +L G EL ++ L A++
Sbjct: 49 NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108
Query: 184 DRGIKGECTPLMEAASSGFIEIVR-------LLINHGADVNGQSSSGNTPLMYACAGGHE 236
+ + + F++ + G + + G T L +
Sbjct: 109 ALYKPY-KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 237 AVVRVLLECGANVEDHNEN 255
++++ + +
Sbjct: 168 IALKMMEDYIKKYNLKENS 186
Score = 91.3 bits (227), Expect = 2e-21
Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 68/228 (29%)
Query: 376 RSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESL---LSLACSAGYYELAQVLLAMHAN 432
R++ A G + +L +G E+ + L L Y+++ L+ A+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 433 VEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKIN 492
++ R +G T G
Sbjct: 68 IKSRTKEGT-TLFFPLFQGG---------------------------------------- 86
Query: 493 AHTEETQETALTLACCGGFLDVADFLLKNGANI----ELGASTPLMEAAQEGHLE----- 543
+ T T L L+ GA+I + + + ++
Sbjct: 87 -GNDITGTTEL-----------CKIFLEKGADITALYKPY-KIVVFKNIFNYFVDENEMI 133
Query: 544 -LVRYLLDS-GAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
L + + G Q+ K + G TAL + ++ Y +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 83.2 bits (206), Expect = 1e-18
Identities = 26/195 (13%), Positives = 51/195 (26%), Gaps = 33/195 (16%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKE--SALTLACYKGHLDMVRFLLSA 312
+ + + AA G L E G + L + + FL++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 313 GADQEHKTDEMHTALMEASMDGH------VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
GAD + +T E T G E+ K+ L+ GA ++A +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIV------ 117
Query: 367 PSSISYTYSRSLVQACSDGDVKTVKK-------LLTEGRSVHETTDEGESLLSLACSAGY 419
+ + + V + G + G + L
Sbjct: 118 -----------VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166
Query: 420 YELAQVLLAMHANVE 434
+++
Sbjct: 167 PIALKMMEDYIKKYN 181
Score = 71.2 bits (175), Expect = 2e-14
Identities = 18/163 (11%), Positives = 43/163 (26%), Gaps = 34/163 (20%)
Query: 588 LDNSTMLIEAAKGGHANVVQLLL---DFPRSVHAKTQTGDTALTYACENGHTDVADLLLS 644
+ + AA G L + K+ L + ++ L++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 645 YGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKK 699
GA++ + +T+ +GG ++ + +G
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTT-----------------ELCKIFLEKG-- 104
Query: 700 SGVHAKTQTGDTALTYACENGHTDVAD-------LLLSYGANL 735
+ + A + + N D + + G L
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147
Score = 56.2 bits (136), Expect = 3e-09
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 39/132 (29%)
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANL----DNSTMLIEA----AKGGHANVVQL 669
+ + ++ A G + L G S +L + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 670 LLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVAD--- 726
L++ K + + ++T+ G T + G D+
Sbjct: 61 LIN-------------------------KGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95
Query: 727 ---LLLSYGANL 735
+ L GA++
Sbjct: 96 LCKIFLEKGADI 107
Score = 50.4 bits (121), Expect = 3e-07
Identities = 21/194 (10%), Positives = 53/194 (27%), Gaps = 32/194 (16%)
Query: 1 SLVQACSDGDVKTVKKLLTEGRSVHETTDEGESL---LSLACSAGYYELAQVLLAMHANV 57
++ A G + +L +G E+ + L L Y+++ L+ A++
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 58 EDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNE 117
+ R +G T G + E+ + L++ A +
Sbjct: 69 KSRTKEGT-TLFFPLFQGGGNDIT------GTTELCKIF-------LEKGA-------DI 107
Query: 118 NPRPQNERS-LVQACSDGDVKTVKK-------LLTEGRSVHETTDEGESLLSLACSAGYY 169
+ + + + + V + G + G + L
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 170 ELAQVLLAMHANVE 183
+++
Sbjct: 168 IALKMMEDYIKKYN 181
Score = 30.4 bits (69), Expect = 1.5
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 704 AKTQTGDTALTYACENGHTDVADLLLSYGANLRNR 738
+ + ++ A G + L G +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKES 35
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 121 bits (306), Expect = 5e-33
Identities = 46/90 (51%), Positives = 60/90 (66%)
Query: 191 CTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVE 250
TPL AA +G +E+V+LL+ GADVN + +G TPL A GH VV++LLE GA+V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 251 DHNENGHTPLMEAASAGHVGVAKILLEYGA 280
++NG TPL AA GH+ V K+LLE GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 109 bits (275), Expect = 7e-29
Identities = 46/117 (39%), Positives = 58/117 (49%), Gaps = 28/117 (23%)
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
TPL AA+ GHLE+V+ LL++GA V+AK + G T L A NGH +V LLL GA+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA 647
V+AK + G T L A NGH +V LLL GA
Sbjct: 61 -------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 105 bits (266), Expect = 1e-27
Identities = 44/93 (47%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 222 SGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+G TPL A GH VV++LLE GA+V ++NG TPL AA GH+ V K+LLE GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 282 INTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
+N + L LA GHL++V+ LL AGA
Sbjct: 61 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 105 bits (264), Expect = 2e-27
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGA 314
NG TPL AA GH+ V K+LLE GA +N ++ + L LA GHL++V+ LL AGA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 315 DQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
D K T L A+ +GH+EV KLLL++GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 102 bits (258), Expect = 2e-26
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 501 TALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLELVRYLLDSGAQVHA 557
T L LA G L+V LL+ GA++ TPL AA+ GHLE+V+ LL++GA V+A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 558 KTQTGDTALTYACENGHTDVADLLLSYGA 586
K + G T L A NGH +V LLL GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 93.2 bits (233), Expect = 3e-23
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 156 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGAD 215
G + L LA G+ E+ ++LL A+V + G TPL AA +G +E+V+LL+ GAD
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-RTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
VN + +G TPL A GH VV++LLE GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 87.0 bits (217), Expect = 5e-21
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 33/116 (28%)
Query: 562 GDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQ 621
G T L A NGH +V LLL GA+ V+AK +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------------------VNAKDK 33
Query: 622 TGDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLD 672
G T L A NGH +V LLL GA++ + T L AA+ GH VV+LLL+
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 85.5 bits (213), Expect = 2e-20
Identities = 41/116 (35%), Positives = 51/116 (43%), Gaps = 30/116 (25%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 677
G T L A NGH +V LLL GA++ + T L AA+ GH VV+LLL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------ 55
Query: 678 IGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGA 733
G + V+AK + G T L A NGH +V LLL GA
Sbjct: 56 -----------------EAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 64.3 bits (158), Expect = 5e-13
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A+V + G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 190 ECTPLMEAASSGFIEIVRLLINHGA 214
TPL AA +G +E+V+LL+ GA
Sbjct: 69 -RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 61.6 bits (151), Expect = 5e-12
Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 51/139 (36%)
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSA 352
L LA GHL++V+ LL AGAD K T L A+ +GH+EV KLLL++GA
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---- 60
Query: 353 YARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLS 412
V+ G + L
Sbjct: 61 -----------------------------------------------VNAKDKNGRTPLH 73
Query: 413 LACSAGYYELAQVLLAMHA 431
LA G+ E+ ++LL A
Sbjct: 74 LAARNGHLEVVKLLLEAGA 92
Score = 48.9 bits (118), Expect = 2e-07
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 58/148 (39%)
Query: 407 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR 466
G + L LA G+ E+ ++LL A+V + G TPL AA +G E V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-RTPLHLAARNGHL----EVVK---- 52
Query: 467 HDFFPNDKSVNGLQASVILIP-GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANI 525
+L+ GA +NA KNG
Sbjct: 53 -----------------LLLEAGADVNAKD------------------------KNG--- 68
Query: 526 ELGASTPLMEAAQEGHLELVRYLLDSGA 553
TPL AA+ GHLE+V+ LL++GA
Sbjct: 69 ----RTPLHLAARNGHLEVVKLLLEAGA 92
Score = 44.7 bits (107), Expect = 4e-06
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 52/128 (40%)
Query: 325 TALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSD 384
T L A+ +GH+EV KLLL++GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD------------------------------------ 27
Query: 385 GDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTP 444
V+ G + L LA G+ E+ ++LL A+V + G TP
Sbjct: 28 ---------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-RTP 71
Query: 445 LMEAASSG 452
L AA +G
Sbjct: 72 LHLAARNG 79
Score = 44.7 bits (107), Expect = 4e-06
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A+V + G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 65 ECTPLMEAASSG 76
TPL AA +G
Sbjct: 69 -RTPLHLAARNG 79
Score = 32.7 bits (76), Expect = 0.058
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 31 GESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 76
G + L LA G+ E+ ++LL A+V + G TPL AA +G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG-RTPLHLAARNG 46
Score = 28.1 bits (64), Expect = 2.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 55
A +G ++ VK LL G V+ G + L LA G+ E+ ++LL A
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 121 bits (305), Expect = 1e-32
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 197 AASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENG 256
+S L+ G+ + S L+ A G + VR+L+ GA+V ++NG
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 257 HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFL 309
TPL AA GH+ V K+LLE GA + ++F ++A ++ G+ D+ L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 113 bits (284), Expect = 6e-30
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 163 ACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSS 222
S ++ + L+ +++ L+EAA +G + VR+L+ +GADV + +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDL----GKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 223 GNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
G+TPL A GH VV++LLE GA+V ++ G T + G+ +A+IL
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 110 bits (278), Expect = 4e-29
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 506 ACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTA 565
+ L+ G+++ L+EAA+ G + VR L+ +GA V AK + G T
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP 60
Query: 566 LTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLL 609
L A NGH +V LLL GA++ T + G+ ++ ++L
Sbjct: 61 LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 104 bits (262), Expect = 6e-27
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 36/140 (25%)
Query: 536 AAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLI 595
+ H L+ G+ + + L A G D +L++ GA+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGAD-------- 49
Query: 596 EAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----D 650
V AK + G T L A NGH +V LLL GA++
Sbjct: 50 --------------------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 651 NSTMLIEAAKGGHANVVQLL 670
T + G+ ++ ++L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 91.5 bits (228), Expect = 3e-22
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 263 AASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDE 322
+S H + L+ G+ + + L A G D VR L++ GAD K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 323 MHTALMEASMDGHVEVAKLLLDSGA 347
T L A+ +GH+EV KLLL++GA
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 89.2 bits (222), Expect = 1e-21
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
G+ + + L A G D L+ NGA++ STPL AA+ GHLE+
Sbjct: 17 GSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
V+ LL++GA V A+ + G TA + +NG+ D+A++L
Sbjct: 73 VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 83.0 bits (206), Expect = 2e-19
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
S L+ G + + L A AG + ++L+A A+V + G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVL 242
TPL AA +G +E+V+LL+ GADV Q G T + G+E + +L
Sbjct: 58 -STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 80.7 bits (200), Expect = 2e-18
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 27/107 (25%)
Query: 630 ACENGHTDVADLLLSYGANLDN--STMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSD 687
+ H + L+ G+++ + L+EAA+ G + V++L+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILM---------------- 44
Query: 688 DSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ G V AK + G T L A NGH +V LLL GA+
Sbjct: 45 -------ANGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 61.4 bits (150), Expect = 8e-12
Identities = 24/158 (15%), Positives = 44/158 (27%), Gaps = 55/158 (34%)
Query: 297 ACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARH 356
H L+ G+ L+EA+ G + ++L+ +GA
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGAD-------- 49
Query: 357 DFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS 416
V G + L LA
Sbjct: 50 -------------------------------------------VAAKDKNGSTPLHLAAR 66
Query: 417 AGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQ 454
G+ E+ ++LL A+V + G+ T + +G +
Sbjct: 67 NGHLEVVKLLLEAGADVXAQDKFGK-TAFDISIDNGNE 103
Score = 40.3 bits (95), Expect = 2e-04
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
S L+ G + + L A AG + ++L+A A+V + G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 65 ECTPLMEAASSG 76
TPL AA +G
Sbjct: 58 -STPLHLAARNG 68
Score = 37.9 bits (89), Expect = 0.001
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A G V+ L+ G V G + L LA G+ E+ ++LL A+V + G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 65 ECTPLMEAASSGFGKLA 81
+ T + +G LA
Sbjct: 91 K-TAFDISIDNGNEDLA 106
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 120 bits (305), Expect = 1e-32
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 180 ANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVV 239
K TPL AA +G E V+ L++ GADVN +S GNTPL A GH +V
Sbjct: 2 HMWGS---KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 240 RVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSN 287
++LL GA+V +++G+TP A GH + K+L GA +N S
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 110 bits (277), Expect = 7e-29
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 31/131 (23%)
Query: 522 GANI--ELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVAD 579
G + G +TPL AA+ GH E V+ LL GA V+A+++ G+T L A +NGH ++
Sbjct: 1 GHMWGSKDG-NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 580 LLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVA 639
LLL+ GA+ V+A+++ G+T A +NGH ++
Sbjct: 60 LLLAKGAD----------------------------VNARSKDGNTPEHLAKKNGHHEIV 91
Query: 640 DLLLSYGANLD 650
LL + GA+++
Sbjct: 92 KLLDAKGADVN 102
Score = 109 bits (274), Expect = 2e-28
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 246 GANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDM 305
G ++G+TPL AA GH K LL GA +N ++ + L LA GH ++
Sbjct: 1 GHMWGS--KDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEI 57
Query: 306 VRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
V+ LL+ GAD ++ + +T A +GH E+ KLL GA
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 107 bits (269), Expect = 1e-27
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
G + + T L A G + LL GA++ + +TPL AA+ GH E+
Sbjct: 1 GHMWGS---KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
Query: 545 VRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD 589
V+ LL GA V+A+++ G+T A +NGH ++ LL + GA+++
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 105 bits (265), Expect = 3e-27
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 153 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINH 212
+ +G + L A G+ E + LL+ A+V R G TPL AA +G EIV+LL+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG-NTPLHLAAKNGHAEIVKLLLAK 64
Query: 213 GADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPL 260
GADVN +S GNTP A GH +V++L GA+V +
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 88.6 bits (221), Expect = 3e-21
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 30/117 (25%)
Query: 623 GDTALTYACENGHTDVADLLLSYGANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSV 677
G+T L A +NGH + LLS GA++ D +T L AAK GHA +V+LLL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL------ 62
Query: 678 IGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
++G + V+A+++ G+T A +NGH ++ LL + GA+
Sbjct: 63 -----------------AKG--ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 83.2 bits (207), Expect = 2e-19
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 130 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 189
A +G + VKKLL++G V+ + +G + L LA G+ E+ ++LLA A+V R G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 190 ECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMY 229
TP A +G EIV+LL GADVN +S + +
Sbjct: 76 -NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
Score = 80.1 bits (199), Expect = 2e-18
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGA---STPLMEAAQEGHLEL 544
GA +NA + T L LA G ++ LL GA++ + +TP A + GH E+
Sbjct: 32 GADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90
Query: 545 VRYLLDSGAQVHAKTQTGDTALTY 568
V+ L GA V+A++ +
Sbjct: 91 VKLLDAKGADVNARSWGSSHHHHH 114
Score = 69.3 bits (171), Expect = 1e-14
Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 55/167 (32%)
Query: 279 GAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEV 338
G ++ + L A GH + V+ LLS GAD ++ + +T L A+ +GH E+
Sbjct: 1 GHMWG---SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
Query: 339 AKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGR 398
KLLL GA
Sbjct: 58 VKLLLAKGAD-------------------------------------------------- 67
Query: 399 SVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 445
V+ + +G + LA G++E+ ++L A A+V R
Sbjct: 68 -VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS-SHHH 112
Score = 55.8 bits (136), Expect = 8e-10
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 28/92 (30%)
Query: 646 GANL---DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGV 702
G D +T L AAK GHA V+ LL S+G V
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLL-----------------------SKGAD--V 35
Query: 703 HAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+A+++ G+T L A +NGH ++ LLL+ GA+
Sbjct: 36 NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Score = 45.4 bits (109), Expect = 3e-06
Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 54/140 (38%)
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISY 372
G + + +T L A+ +GH E K LL GA
Sbjct: 1 GHMW--GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------------------ 34
Query: 373 TYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHAN 432
V+ + +G + L LA G+ E+ ++LLA A+
Sbjct: 35 ---------------------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 433 VEDRGIKGECTPLMEAASSG 452
V R G TP A +G
Sbjct: 68 VNARSKDG-NTPEHLAKKNG 86
Score = 44.7 bits (107), Expect = 6e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G + VKKLL++G V+ + +G + L LA G+ E+ ++LLA A+V R G
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 65 ECTPLMEAASSG 76
TP A +G
Sbjct: 76 -NTPEHLAKKNG 86
Score = 36.6 bits (86), Expect = 0.004
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKG 64
A +G + VK LL +G V+ + +G + LA G++E+ ++L A A+V R
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108
Query: 65 ECTPL 69
Sbjct: 109 -SHHH 112
Score = 31.2 bits (72), Expect = 0.34
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 28 TDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG 76
+ +G + L A G+ E + LL+ A+V R G TPL AA +G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG-NTPLHLAAKNG 53
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 125 bits (315), Expect = 3e-32
Identities = 50/271 (18%), Positives = 90/271 (33%), Gaps = 58/271 (21%)
Query: 116 NENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHE--------TTDEGESLLSLA---C 164
+ PR + RS+ A + + + ++ LL + + + G++ L A
Sbjct: 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65
Query: 165 SAGYYELAQVLLA-----------MHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHG 213
G + +LL ++A+ D KG+ T L A + +V LL+ +G
Sbjct: 66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ-TALHIAIERRNMTLVTLLVENG 124
Query: 214 ADVNGQSSS--------------GNTPLMYACAGGHEAVVRVLLECG---ANVEDHNENG 256
ADV ++ G PL A A+V+ LL+ A++ + G
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG 184
Query: 257 HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQ 316
+T L N + + Y L + L +
Sbjct: 185 NTVLHALVEVAD------------------NTVDNTKFVTSMYNEILILGAKLHPTLKLE 226
Query: 317 EHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
E + T L A+ G + V +L
Sbjct: 227 EITNRKGLTPLALAASSGKIGVLAYILQREI 257
Score = 117 bits (296), Expect = 9e-30
Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 52/296 (17%)
Query: 397 GRSVHETTDEGESLLSLACSAGYYELAQVLLAM-------HANVEDRGIKGECTPLMEAA 449
+ A + + + LL + E + + T L++A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 450 SSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCG 509
+ N++++ + + L+ V A + +TAL +A
Sbjct: 63 LNL-HNGQNDTIALLLDVA-----RKTDSLKQFV----NASYTD-SYYKGQTALHIAIER 111
Query: 510 GFLDVADFLLKNGANIELGA-----------------STPLMEAAQEGHLELVRYLLDSG 552
+ + L++NGA+++ A PL AA L +V++LL +
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171
Query: 553 ---AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLL 609
A + A+ G+T L E V +T + + + L
Sbjct: 172 WQPADISARDSVGNTVLHALVEVADNTVD------------NTKFVTSMYNEILILGAKL 219
Query: 610 LDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHAN 665
+ + G T L A +G V +L + AA H +
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--EPECRHAAAHHHHHH 273
Score = 116 bits (293), Expect = 2e-29
Identities = 41/256 (16%), Positives = 67/256 (26%), Gaps = 49/256 (19%)
Query: 505 LACCGGFLDVADFLLKNGANIELGAS----TPLMEA---AQEGHLELVRYLLDSGAQVHA 557
L K + E T L++A G + + LLD + +
Sbjct: 26 CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85
Query: 558 -----------KTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVV 606
G TAL A E + + LL+ GA++ AA G
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ------AAANGD----- 134
Query: 607 QLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGA--------NLDNSTMLIEA 658
G+ L+ A + LL + +T+L
Sbjct: 135 ---FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
Query: 659 AKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACE 718
+ V S+ + + L K + G T L A
Sbjct: 192 VEVADNTVDNTKFVT-------SMYNEILILGAKLHPTLKL--EEITNRKGLTPLALAAS 242
Query: 719 NGHTDVADLLLSYGAN 734
+G V +L +
Sbjct: 243 SGKIGVLAYILQREIH 258
Score = 113 bits (284), Expect = 4e-28
Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 51/220 (23%)
Query: 128 VQACSDGDVKTVKKLLTEGR-----------SVHETTDEGESLLSLACSAGYYELAQVLL 176
+ +G T+ LL R S ++ +G++ L +A L +L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 177 AMHANVEDRGIKGE-------------CTPLMEAASSGFIEIVRLLINHG---ADVNGQS 220
A+V+ PL AA + + IV+ L+ + AD++ +
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Query: 221 SSGNTPLMYACAGGHEAVVRV---------LLECGANVEDH-------NENGHTPLMEAA 264
S GNT L V +L GA + N G TPL AA
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241
Query: 265 SAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD 304
S+G +GV +L+ A + H
Sbjct: 242 SSGKIGVLAYILQREIHEPE--------CRHAAAHHHHHH 273
Score = 107 bits (270), Expect = 3e-26
Identities = 47/310 (15%), Positives = 90/310 (29%), Gaps = 74/310 (23%)
Query: 177 AMHANVEDRGIKGECTPLMEAASSG-------FIEIVRLLINHGADVNGQ-SSSGNTPLM 228
++ A + + + +A + + ++ D + +G T L+
Sbjct: 1 SVSAGEKPPRLYDR-RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59
Query: 229 YACA---GGHEAVVRVLLECGANVE-----------DHNENGHTPLMEAASAGHVGVAKI 274
A G + +LL+ + D G T L A ++ + +
Sbjct: 60 KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119
Query: 275 LLEYGAGINTHSNE--FKESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASM 332
L+E GA + +N FK++ Y G L A+
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGE----------------------LPLSLAAC 157
Query: 333 DGHVEVAKLLLDSGAQSVSAYARHDF----------FPNDKCERPSSISYTYSRSLVQAC 382
+ + K LL + Q AR ++ + V +
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT---------KFVTSM 208
Query: 383 SDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGEC 442
+ + KL + T +G + L+LA S+G + +L R I
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL-------QREIHEP- 260
Query: 443 TPLMEAASSG 452
AA
Sbjct: 261 ECRHAAAHHH 270
Score = 107 bits (269), Expect = 4e-26
Identities = 51/337 (15%), Positives = 80/337 (23%), Gaps = 105/337 (31%)
Query: 428 AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGLQASVILIP 487
++ A + + + +A + L + F K
Sbjct: 1 SVSAGEKPPRLYDR-RSIFDAVAQSNCQELESLL------PFLQRSKKR----------- 42
Query: 488 GAKINAHTEETQETALTLACC---GGFLDVADFLLKNGANIELGA--------------S 530
ET +T L A G D LL +
Sbjct: 43 LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQ 102
Query: 531 TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDN 590
T L A + ++ LV L+++GA V A T + +G
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY---------FG----- 148
Query: 591 STMLIEAAKGGHANVVQLLLDFPRS---VHAKTQTGDTALTYACENGHTDVA-------- 639
L AA +V+ LL + A+ G+T L E V
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208
Query: 640 -DLLLSYGANL------------DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPS 686
+ +L GA L T L AA G V+ +L
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL--------------- 253
Query: 687 DDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTD 723
+ A + H
Sbjct: 254 --------QREIH---------EPECRHAAAHHHHHH 273
Score = 66.7 bits (163), Expect = 3e-12
Identities = 38/280 (13%), Positives = 69/280 (24%), Gaps = 84/280 (30%)
Query: 3 VQACSDGDVKTVKKLLTEGR-----------SVHETTDEGESLLSLACSAGYYELAQVLL 51
+ +G T+ LL R S ++ +G++ L +A L +L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 52 AMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAAL 111
A+V+ FG+L
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELP------------------------------ 151
Query: 112 TRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRS---VHETTDEGESLLSLACSAGY 168
L A + VK LL + G ++L
Sbjct: 152 ---------------LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA- 195
Query: 169 YELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLM 228
V++ T + + + + + L + G TPL
Sbjct: 196 ----------DNTVDN-------TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 229 YACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH 268
A + G V+ +L+ + AA H
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHHH 271
Score = 36.3 bits (84), Expect = 0.025
Identities = 19/100 (19%), Positives = 26/100 (26%), Gaps = 25/100 (25%)
Query: 644 SYGANLDN-----STMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGK 698
S A + +A + ++ LL F + L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK------------KRLTDSEF 48
Query: 699 KSGVHAKTQTGDTALTYA---CENGHTDVADLLLSYGANL 735
K +TG T L A NG D LLL
Sbjct: 49 K-----DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 120 bits (303), Expect = 1e-30
Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 55/259 (21%)
Query: 120 RPQNERSLVQACSDGDVKT----VKKLLTEGRSVHET----TDEGESLLSLA---CSAGY 168
+ N L S G + LLT + + + G++ L A SAG
Sbjct: 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61
Query: 169 YELAQVLLA-----------MHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVN 217
+ +LL +++ D +G+ T L A V LL+ GADV+
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ-TALHIAIERRCKHYVELLVEKGADVH 120
Query: 218 --------------GQSSSGNTPLMYACAGGHEAVVRVLLECG---ANVEDHNENGHTPL 260
G G PL A +V L E G A++ + G+T L
Sbjct: 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Query: 261 MEAASAGH---------VGVAKILLEYGAGINTHS------NEFKESALTLACYKGHLDM 305
+ + +LL A + + N S L +A G + +
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240
Query: 306 VRFLLSAGADQEHKTDEMH 324
+ ++ H
Sbjct: 241 FQHIIRREIADAAAHHHHH 259
Score = 110 bits (277), Expect = 3e-27
Identities = 40/264 (15%), Positives = 68/264 (25%), Gaps = 54/264 (20%)
Query: 501 TALTLACCGGFLDVADFLLKNGANI--------ELGASTPLMEAA---QEGHLELVRYLL 549
++ G + FLL + + G T L +A G + + LL
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG-KTCLPKALLNLSAGRNDTIPILL 69
Query: 550 DSG-----------AQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAA 598
D + G TAL A E +LL+ GA++ A
Sbjct: 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------AQA 123
Query: 599 KGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG---ANLDNS--- 652
+G P+ G+ L+ A + L G A+L
Sbjct: 124 RGRFFQ--------PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175
Query: 653 --TMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGD 710
T+L F + L + + G
Sbjct: 176 GNTVLHALVAIADNTRENT--KFVTKMYDLLLIKCAKLFP-------DTNLEALLNNDGL 226
Query: 711 TALTYACENGHTDVADLLLSYGAN 734
+ L A + G + ++
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREIA 250
Score = 108 bits (271), Expect = 2e-26
Identities = 43/248 (17%), Positives = 71/248 (28%), Gaps = 53/248 (21%)
Query: 160 LSLACSAGYYELAQVLLAMHANVEDRGIKGE---CTPLMEAA---SSGFIEIVRLLINHG 213
+S G L LL + D + T L +A S+G + + +L++
Sbjct: 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72
Query: 214 AD-----------VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV------------- 249
G T L A + V +L+E GA+V
Sbjct: 73 EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKD 132
Query: 250 -EDHNENGHTPLMEAASAGHVGVAKILLEYG---AGINTHSNEFKESALTLACYKGH--- 302
+ G PL AA + L E G A + + + L
Sbjct: 133 EGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR-QDSRGNTVLHALVAIADNTR 191
Query: 303 ------LDMVRFLLSAGADQEHKTDEMH-------TALMEASMDGHVEVAKLLLDSGAQS 349
M LL A T+ + LM A+ G + + + ++
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
Query: 350 VSAYARHD 357
+ A H
Sbjct: 252 AA--AHHH 257
Score = 99.9 bits (249), Expect = 1e-23
Identities = 34/223 (15%), Positives = 55/223 (24%), Gaps = 58/223 (26%)
Query: 488 GAKINAHTEETQ---ETALTLA---CCGGFLDVADFLLKNGANIELGAS----------- 530
++ +T L A G D LL
Sbjct: 32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91
Query: 531 ---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQT--------------GDTALTYACENG 573
T L A + V L++ GA VHA+ + G+ L+ A
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 574 HTDVADLLLSYG---ANLDNS-----TMLIEAAKGGH---------ANVVQLLLDFPRSV 616
+ L G A+L T+L + LLL +
Sbjct: 152 QPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211
Query: 617 HAKTQT-------GDTALTYACENGHTDVADLLLSYGANLDNS 652
T G + L A + G + ++ +
Sbjct: 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA 254
Score = 99.1 bits (247), Expect = 3e-23
Identities = 45/284 (15%), Positives = 78/284 (27%), Gaps = 77/284 (27%)
Query: 192 TPLMEAASSG----FIEIVRLLINHGADVN----GQSSSGNTPLMYA---CAGGHEAVVR 240
L + S G ++ L+ H + + S+G T L A + G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 241 VLLECG-----------ANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSN-- 287
+LL+ + D G T L A ++L+E GA ++ +
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 288 -----------EFKESALTLACYKGHLDMVRFLLSAG---ADQEHKTDEMHTALMEASM- 332
F E L+LA +V +L G AD + +T L
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186
Query: 333 -DGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVK 391
D E K + + A+ N +
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL------------------------- 221
Query: 392 KLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVED 435
++G S L +A G + Q ++
Sbjct: 222 ------------NNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Score = 89.8 bits (223), Expect = 4e-20
Identities = 44/245 (17%), Positives = 63/245 (25%), Gaps = 80/245 (32%)
Query: 531 TPLMEAA----QEGHLELVRYLLDSGAQVHAK----TQTGDTALTYACEN---GHTDVAD 579
L + +G L+ +LL ++ + TG T L A N G D
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 580 LLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVA 639
+LL N I + G TAL A E
Sbjct: 67 ILLDIAEKTGNMREFINS-----------------PFRDVYYRGQTALHIAIERRCKHYV 109
Query: 640 DLLLSYGANL-------------------DNSTMLIEAAKGGHANVVQLLLDFPRSVIGG 680
+LL+ GA++ L AA ++V L
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT--------- 160
Query: 681 SLSSPSDDSSSHLCSQGKKSG-VHAKTQTGDTALTYACENGH---------TDVADLLLS 730
G K + + G+T L T + DLLL
Sbjct: 161 --------------ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206
Query: 731 YGANL 735
A L
Sbjct: 207 KCAKL 211
Score = 87.1 bits (216), Expect = 3e-19
Identities = 41/329 (12%), Positives = 80/329 (24%), Gaps = 114/329 (34%)
Query: 292 SALTLACYKGHLDMVRFLLSAGA---DQEHKTDEM-HTALMEASM---DGHVEVAKLLLD 344
++ G ++ FLL+ D+E + T L +A + G + +LLD
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70
Query: 345 SGAQSVSAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETT 404
++ + + D
Sbjct: 71 IAEKTGNMREFINSPFRDVY---------------------------------------- 90
Query: 405 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAY 464
G++ L +A ++L+ A+V +
Sbjct: 91 YRGQTALHIAIERRCKHYVELLVEKGADV------------------------HAQARGR 126
Query: 465 ARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNG-- 522
G E L+LA C + +L +NG
Sbjct: 127 FFQPKDEGGYFYFG---------------------ELPLSLAACTNQPHIVHYLTENGHK 165
Query: 523 -ANIELGAS---TPLMEAAQEGH---------LELVRYLLDSGAQVHAKTQT-------G 562
A++ S T L ++ LL A++ T G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225
Query: 563 DTALTYACENGHTDVADLLLSYGANLDNS 591
+ L A + G + ++ +
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADAAA 254
Score = 79.4 bits (196), Expect = 1e-16
Identities = 44/262 (16%), Positives = 75/262 (28%), Gaps = 54/262 (20%)
Query: 35 LSLACSAGYYELAQVLLAMHANVEDRGIKGE---CTPLMEAASSGFGKLATGDGKLADPE 91
+S G L LL + D + T L +A L G+
Sbjct: 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL------LNLSAGRNDTIP 66
Query: 92 VLRRLTSSVSCALDEAAAALTRMRNENPRPQNER---SLVQACSDGDVKTVKKLLTEGRS 148
+L + E + N R R +L A V+ L+ +G
Sbjct: 67 IL--------LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118
Query: 149 VHETTD--------------EGESLLSLACSAGYYELAQVLL---AMHANVEDRGIKGEC 191
VH GE LSLA + L A++ + +G
Sbjct: 119 VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG-N 177
Query: 192 TPLMEAASSG---------FIEIVRLLINHGADVNGQSSS-------GNTPLMYACAGGH 235
T L + ++ LL+ A + ++ G +PLM A G
Sbjct: 178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237
Query: 236 EAVVRVLLECGANVEDHNENGH 257
+ + ++ + + H
Sbjct: 238 IGIFQHIIRREIADAAAHHHHH 259
Score = 47.1 bits (112), Expect = 8e-06
Identities = 35/241 (14%), Positives = 58/241 (24%), Gaps = 74/241 (30%)
Query: 6 CSDGDVKTVKKLLTEGR-----------SVHETTDEGESLLSLACSAGYYELAQVLLAMH 54
S G T+ LL + G++ L +A ++L+
Sbjct: 57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116
Query: 55 ANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRM 114
A+V + P E FG+L
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELP--------------------------------- 143
Query: 115 RNENPRPQNERSLVQACSDGDVKTVKKLLTEGRS---VHETTDEGESLLSLACSAG---- 167
L A V L G + G ++L +
Sbjct: 144 ------------LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191
Query: 168 -----YYELAQVLLAMHANVEDRGIKGEC------TPLMEAASSGFIEIVRLLINHGADV 216
++ +LL A + +PLM AA +G I I + +I
Sbjct: 192 ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
Query: 217 N 217
Sbjct: 252 A 252
Score = 35.9 bits (83), Expect = 0.029
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 29/168 (17%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTD--------------EGESLLSLACSAGYYELAQVL 50
A V+ L+ +G VH GE LSLA + L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Query: 51 L---AMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEA 107
A++ + +G T L + E + +T L +
Sbjct: 160 TENGHKQADLRRQDSRG-NTVLHALVAIADN----------TRENTKFVTKMYDLLLIKC 208
Query: 108 AAALTRMRNENPRPQNERS-LVQACSDGDVKTVKKLLTEGRSVHETTD 154
A E + S L+ A G + + ++ +
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 116 bits (291), Expect = 1e-28
Identities = 53/339 (15%), Positives = 104/339 (30%), Gaps = 40/339 (11%)
Query: 115 RNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQV 174
R P L +K +K L + + +E + E+ L E+
Sbjct: 22 RTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTS 81
Query: 175 LLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQS-SSGNTPLMYACAG 233
L +N G + S E+ N ++N GNTPL + +
Sbjct: 82 LNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141
Query: 234 GHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH---VGVAKILLEYGAGINTHSNEFK 290
+ +V+ L++ G+N + G + L++A + + G + LL+Y +
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201
Query: 291 ESALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSV 350
+ L H ++ + M G AK LD +
Sbjct: 202 RTIL-----------------------------HHIIITSGMTGCSAAAKYYLDILMGWI 232
Query: 351 SAYARHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESL 410
N + ++ + D ++ + ++ G++
Sbjct: 233 VKKQ------NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286
Query: 411 LSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAA 449
L++A G + LL A+ G P+ A
Sbjct: 287 LNIAARLGNISIVDALLDYGADPFIANKSGL-RPVDFGA 324
Score = 112 bits (281), Expect = 2e-27
Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 26/263 (9%)
Query: 111 LTRMRNENPRPQNE-----RSLVQACSDGDVKTVKKLL--TEGRSVHETTDEGESLLSLA 163
+ + NE + +Q +++ + L E + ++
Sbjct: 45 IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 104
Query: 164 CSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSG 223
+ E+ N+ + TPL S +E+V+ L+ HG++ + G
Sbjct: 105 FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164
Query: 224 NTPLMYACAGGH----EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVG--------- 270
+ L+ A + +L + + T L +
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224
Query: 271 ---VAKILLEYGAGINTHSNEFKESALTLACYKGHL---DMVRFLLSAGADQEHKTDEMH 324
+ +++ KES + + + +
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284
Query: 325 TALMEASMDGHVEVAKLLLDSGA 347
T L A+ G++ + LLD GA
Sbjct: 285 TCLNIAARLGNISIVDALLDYGA 307
Score = 99.3 bits (247), Expect = 7e-23
Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 36/281 (12%)
Query: 458 NESVSAYARHDFFPNDKSVNGLQASVILIPGAKINAHTEETQETALTLACCGGFLDVADF 517
+ A+ + FP + + + + N+ + + ++ +V D
Sbjct: 60 KMKLEAFLQRLLFPEIQEMPTSLNND----SSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115
Query: 518 LLKNGANIELGA----STPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENG 573
N+ + +TPL +LELV++L+ G+ G++ L A ++
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Query: 574 HTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACEN 633
+ N D+ T ++ L + + T L +
Sbjct: 176 N------------NYDSGTF---------EALLDYLYP---CLILEDSMNRTILHHIIIT 211
Query: 634 GHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSHL 693
Y ++ K + + + + +
Sbjct: 212 SGMTGCSAAAKYYL----DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267
Query: 694 CSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ ++A+ GDT L A G+ + D LL YGA+
Sbjct: 268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
Score = 97.0 bits (241), Expect = 5e-22
Identities = 54/319 (16%), Positives = 94/319 (29%), Gaps = 52/319 (16%)
Query: 360 PNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGY 419
D +R + T++ L +K +K L + + +E + E+ L
Sbjct: 16 GTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEI 75
Query: 420 YELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSVNGL 479
E+ L +N G + S L E D FPN
Sbjct: 76 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS----LLQEVN------DAFPN------- 118
Query: 480 QASVILIPGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEA 536
+N +E T L L++ L+K+G+N G + + L++A
Sbjct: 119 -------TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Query: 537 AQEGH---LELVRYLLDS-GAQVHAKTQTGDTALTYACENGHTD------------VADL 580
+ + LLD + + T L + +
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231
Query: 581 LLSYGANLDNS---------TMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYAC 631
++ S K + L ++A+ GDT L A
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291
Query: 632 ENGHTDVADLLLSYGANLD 650
G+ + D LL YGA+
Sbjct: 292 RLGNISIVDALLDYGADPF 310
Score = 94.3 bits (234), Expect = 4e-21
Identities = 37/259 (14%), Positives = 73/259 (28%), Gaps = 21/259 (8%)
Query: 92 VLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRSVHE 151
L+RL + + + RN N++ + + +++
Sbjct: 66 FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125
Query: 152 TTD-EGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG----FIEIV 206
D G + L S EL + L+ +N GE + L++A S
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE-SCLVKAVKSVNNYDSGTFE 184
Query: 207 RLLINHGADVNGQSSSGNTPLMYACA------------GGHEAVVRVLLECGANVEDHNE 254
LL + + S T L + + ++ +++
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244
Query: 255 NGHTPLMEAASAGHVGVAKILLEYGAGINTHSNE---FKESALTLACYKGHLDMVRFLLS 311
N + L+ I N ++ L +A G++ +V LL
Sbjct: 245 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304
Query: 312 AGADQEHKTDEMHTALMEA 330
GAD +
Sbjct: 305 YGADPFIANKSGLRPVDFG 323
Score = 92.8 bits (230), Expect = 1e-20
Identities = 43/386 (11%), Positives = 87/386 (22%), Gaps = 90/386 (23%)
Query: 211 NHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANV-----------EDHNENGHTP 259
D + N + L + +
Sbjct: 7 GPSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAF 66
Query: 260 LMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHK 319
L + L + N+ + ++ ++ + +
Sbjct: 67 LQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 126
Query: 320 TDEM-HTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRSL 378
DE +T L + ++E+ K L+ G+
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGS------------------------------- 155
Query: 379 VQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG----YYELAQVLLAMHANVE 434
+ + GES L A + +L ++ +
Sbjct: 156 --------------------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195
Query: 435 DRGIKGECTPLMEAASSGRQCNLNESVSAY--------ARHDFFPNDKSVNGLQASVILI 486
T L + + + Y + P N ++
Sbjct: 196 LEDSMN-RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-- 252
Query: 487 PGAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQEGHLELVR 546
K + E L+ D NG T L AA+ G++ +V
Sbjct: 253 --DKNGERKDSILENLDLKWIIANMLNAQD---SNG-------DTCLNIAARLGNISIVD 300
Query: 547 YLLDSGAQVHAKTQTGDTALTYACEN 572
LLD GA ++G + +
Sbjct: 301 ALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 81.2 bits (200), Expect = 1e-16
Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 50/241 (20%)
Query: 29 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLA 88
+ G + L S EL + L+ +N GE + L++A S
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE-SCLVKAVKSVNNY-----DSGT 182
Query: 89 DPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVKTVKKLLTEGRS 148
+L L + + R+
Sbjct: 183 FEALLDYLYPCLIL------------EDSM---------------------------NRT 203
Query: 149 V-HETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG----FI 203
+ H A + Y ++ + N + E + +
Sbjct: 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263
Query: 204 EIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEA 263
E + L +N Q S+G+T L A G+ ++V LL+ GA+ N++G P+
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Query: 264 A 264
A
Sbjct: 324 A 324
Score = 68.1 bits (166), Expect = 2e-12
Identities = 31/230 (13%), Positives = 61/230 (26%), Gaps = 48/230 (20%)
Query: 5 ACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAG----YYELAQVLLAMHANVEDR 60
S +++ VK L+ G + + GES L A + +L ++ +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197
Query: 61 GIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPR 120
T L + G + + + + +
Sbjct: 198 DSMN-RTILHHIIITS--------GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHA 180
+ + E + +
Sbjct: 249 S----------------------------------KPNDKNGERKDSILENLDLKWIIAN 274
Query: 181 NVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYA 230
+ + G+ T L AA G I IV L+++GAD + SG P+ +
Sbjct: 275 MLNAQDSNGD-TCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
Score = 33.5 bits (76), Expect = 0.22
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 2 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 61
D ++ + ++ G++ L++A G + LL A+
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN 313
Query: 62 IKGECTPLMEAA 73
G P+ A
Sbjct: 314 KSGL-RPVDFGA 324
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 78.9 bits (194), Expect = 2e-16
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 191 CTPLMEAASSG---FIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGA 247
T L A S + IV L+ + +++ Q+ G+T L Y C + +++LL A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 248 NVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG-INTHSN 287
++E NE+G TPL A H ++L + +G N+H +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270
Score = 75.4 bits (185), Expect = 4e-15
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 11/132 (8%)
Query: 467 HDFFPNDKSVNGLQASVILIPGAKIN-----AHTEETQETALTLACCGG---FLDVADFL 518
H K+ + G + A+ E ETAL LA L + DFL
Sbjct: 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 191
Query: 519 LKNGANIELGAS---TPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHT 575
++N N++ T L + E ++ LL A + ++G+T L A H
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251
Query: 576 DVADLLLSYGAN 587
+LL +
Sbjct: 252 HCEELLTQALSG 263
Score = 73.9 bits (181), Expect = 1e-14
Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 114 MRNENPRPQNERSLVQACSDGDVKTVKKLLTEG------RSVHETTDEGESLLSLACSAG 167
+ SL +A D+ + + +G + + E+ L LA +
Sbjct: 121 RKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSV 180
Query: 168 ---YYELAQVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGN 224
+ L+ N++ + KG T L + E ++LL+ A + + SG
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKG-STALHYCCLTDNAECLKLLLRGKASIEIANESGE 239
Query: 225 TPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP 259
TPL A HE +L + + + + +
Sbjct: 240 TPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274
Score = 66.9 bits (163), Expect = 3e-12
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 31/122 (25%)
Query: 530 STPL---MEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGA 586
T L + + L +V +L+ + + +T G TAL Y C + + LLL A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 587 NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
+ + ++G+T L A H +LL
Sbjct: 230 S----------------------------IEIANESGETPLDIAKRLKHEHCEELLTQAL 261
Query: 647 AN 648
+
Sbjct: 262 SG 263
Score = 58.1 bits (140), Expect = 2e-09
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 8/130 (6%)
Query: 550 DSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNST---MLIEAAKGGHANVV 606
+ +T D D+ + + + + T + + + ++V
Sbjct: 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188
Query: 607 QLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANLD-----NSTMLIEAAKG 661
L+ ++ +T G TAL Y C + + LLL A+++ T L A +
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Query: 662 GHANVVQLLL 671
H + +LL
Sbjct: 249 KHEHCEELLT 258
Score = 57.7 bits (139), Expect = 3e-09
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 13/140 (9%)
Query: 216 VNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNE---------NGHTPLMEAASA 266
+ + L C + LL+ A+ D E T L A +
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179
Query: 267 G---HVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAGADQEHKTDEM 323
+ + L++ ++ + + +AL C + + ++ LL A E +
Sbjct: 180 VDRTSLHIVDFLVQNSGNLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238
Query: 324 HTALMEASMDGHVEVAKLLL 343
T L A H +LL
Sbjct: 239 ETPLDIAKRLKHEHCEELLT 258
Score = 49.2 bits (117), Expect = 2e-06
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 284 THSNEFKESALTLAC---YKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAK 340
+ +E E+AL LA + L +V FL+ + + +T + TAL + + E K
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222
Query: 341 LLLDSGA 347
LLL A
Sbjct: 223 LLLRGKA 229
Score = 40.7 bits (95), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGAN 734
+ +T G TAL Y C + + LLL A+
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Score = 38.8 bits (90), Expect = 0.004
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 1 SLVQACSDGD---VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 57
+L A D + V L+ ++ + T +G + L C E ++LL A++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 58 EDRGIKGECTPLMEAASSGFGKLAT 82
E GE TPL A
Sbjct: 232 EIANESGE-TPLDIAKRLKHEHCEE 255
Score = 38.1 bits (88), Expect = 0.008
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 377 SLVQACSDGD---VKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 433
+L A D + V L+ ++ + T +G + L C E ++LL A++
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 434 EDRGIKGECTPLMEAASSG 452
E GE TPL A
Sbjct: 232 EIANESGE-TPLDIAKRLK 249
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 77.1 bits (189), Expect = 3e-15
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 150 HETTDEGESLLSLACSAGYYELAQVLLAMHANV-EDRGIKGECTPLMEAASSGFIEIVRL 208
+ G L + LA A+V G + TPL++A ++ +
Sbjct: 194 LGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253
Query: 209 LINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGH 268
L+ +GA+VN S+G PL +A GH + + L+ GA++ + G PL A +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 269 VGVAKILLE 277
+ +L
Sbjct: 314 ADIVTLLRL 322
Score = 74.4 bits (182), Expect = 2e-14
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 7/148 (4%)
Query: 485 LIPGAKIN-AHTEETQETALTLACCGGFLDVADFLLKNGANIELGAS---TPLMEAAQEG 540
L GA +N + + T L A L +FLL+NGAN+ S PL A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 541 HLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLL---SYGANLDNSTMLIEA 597
H L L GA + A+ G LT A E + D+ LL A E
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET 339
Query: 598 AKGGHANVVQLLLDFPRSVHAKTQTGDT 625
+ + D P + ++ T
Sbjct: 340 YLDIFRDFSLMASDDPEKLSRRSHDLHT 367
Score = 73.7 bits (180), Expect = 4e-14
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQSSS--GNTPLMYACAGGHEAVVRVLLECGANVED 251
+ + + + HGADVN + TPL+ A A LL+ GANV
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 252 HNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLS 311
+ G PL A GH G+A + L+ GA + + LT+A + D+V L
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRL 322
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS 345
A + A E +D + + + D
Sbjct: 323 AKMREAEAAQ--GQAGDETYLDIFRDFSLMASDD 354
Score = 69.4 bits (169), Expect = 9e-13
Identities = 40/174 (22%), Positives = 56/174 (32%), Gaps = 36/174 (20%)
Query: 521 NGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADL 580
N N +TPL++A L +LL +GA V+ G L +A GHT +A L
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286
Query: 581 LLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVAD 640
L GA+ + A+ G LT A E + D+
Sbjct: 287 FLKRGAD----------------------------LGARDSEGRDPLTIAMETANADIVT 318
Query: 641 LLL---SYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSS 691
LL A E + + D P LS S D +
Sbjct: 319 LLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPE-----KLSRRSHDLHT 367
Score = 67.5 bits (164), Expect = 4e-12
Identities = 32/180 (17%), Positives = 54/180 (30%), Gaps = 4/180 (2%)
Query: 78 GKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQNERSLVQACSDGDVK 137
G+ P V + + + + P + +
Sbjct: 156 GRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHP-GALLFRASGHPPSLP 214
Query: 138 TVKKLLTEGRSVHETT--DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLM 195
T+ L G V+ + + L A +A + LL ANV G PL
Sbjct: 215 TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG-RGPLH 273
Query: 196 EAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNEN 255
A G + L + GAD+ + S G PL A + +V +L + +
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333
Score = 64.8 bits (157), Expect = 3e-11
Identities = 33/168 (19%), Positives = 51/168 (30%), Gaps = 35/168 (20%)
Query: 529 ASTPLMEAAQEGHLELVRYLLDSGAQVHAKT--QTGDTALTYACENGHTDVADLLLSYGA 586
+ + L + L GA V+ Q T L A + LL GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 587 NLDNSTMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYG 646
N++ G L +A GHT +A L L G
Sbjct: 260 NVN----------------------------QADSAGRGPLHHATILGHTGLACLFLKRG 291
Query: 647 ANL-----DNSTMLIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDS 689
A+L + L A + +A++V LL + D++
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDET 339
Score = 54.0 bits (129), Expect = 8e-08
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 1/114 (0%)
Query: 235 HEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGIN-THSNEFKESA 293
+R E + G + + L +GA +N + + +
Sbjct: 179 RPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP 238
Query: 294 LTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
L A L FLL GA+ L A++ GH +A L L GA
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Score = 40.5 bits (94), Expect = 0.001
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 32/135 (23%)
Query: 611 DFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-------DNSTMLIEAAKGGH 663
+ P G + L++GA++ DN+T LI+A
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 664 ANVVQLLLDFPRSVIGGSLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTD 723
+ LL + ++ V+ G L +A GHT
Sbjct: 248 LLACEFLL-----------QNGAN--------------VNQADSAGRGPLHHATILGHTG 282
Query: 724 VADLLLSYGANLRNR 738
+A L L GA+L R
Sbjct: 283 LACLFLKRGADLGAR 297
Score = 33.6 bits (76), Expect = 0.22
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 681 SLSSPSDDSSSHLCSQGKKSGVHAKTQTGDTALTYACENGHTDVADLLLSYGANLRNRT 739
S PS + + + G Q T L A + LL GAN+
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Score = 32.1 bits (72), Expect = 0.76
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 20/133 (15%)
Query: 297 ACYKGHLDMVRFLLSAGAD--QEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYA 354
+ + L + L+ GAD + + T L++A+ + + LL +GA V+
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQAD 265
Query: 355 RHDFFPNDKCERPSSISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLA 414
P L A G L G + EG L++A
Sbjct: 266 SAGRGP-----------------LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Query: 415 CSAGYYELAQVLL 427
++ +L
Sbjct: 309 METANADIVTLLR 321
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 75.4 bits (185), Expect = 5e-15
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 37/169 (21%)
Query: 119 PRPQNERSLVQACSDGDVKTVKKLLTEGRSV------HETTDEGESLLSLACSAGYYELA 172
+ L A + D+ +V + G+ + E +L LA
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVA----- 201
Query: 173 QVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACA 232
PL++ +I +G ++ +++ GNT L YA
Sbjct: 202 ---------------NQASLPLVD-----------FIIQNGGHLDAKAADGNTALHYAAL 235
Query: 233 GGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAG 281
+++LL+ A V NE G T L A H ++L + AG
Sbjct: 236 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 68.9 bits (168), Expect = 8e-13
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 203 IEIVRLLINHGADVNGQ------SSSGNTPLMYACAGGHEAVVRV---LLECGANVEDHN 253
+ V +G D + L A ++A + + +++ G +++
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA 223
Query: 254 ENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLDMVRFLLSAG 313
+G+T L AA K+LL+ A + T NE E+AL +A K H + L A
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKECEELLEQAQ 282
Query: 314 ADQ 316
A
Sbjct: 283 AGT 285
Score = 68.5 bits (167), Expect = 9e-13
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 493 AHTEETQETALTLACCGGF---LDVADFLLKNGANI---ELGASTPLMEAAQEGHLELVR 546
+ +E L LA L + DF+++NG ++ +T L AA + ++
Sbjct: 184 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK 243
Query: 547 YLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 587
LL A V + G+TAL A + H + +LL A
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 62.7 bits (152), Expect = 9e-11
Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 28/114 (24%)
Query: 535 EAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTML 594
+ A + L LV +++ +G + AK G+TAL YA D LLL A
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL------- 251
Query: 595 IEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGAN 648
V + G+TAL A + H + +LL A
Sbjct: 252 ---------------------VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284
Score = 58.8 bits (142), Expect = 1e-09
Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 8/138 (5%)
Query: 541 HLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTML---IEA 597
R ++ D D L A +L ++
Sbjct: 141 EHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKV 200
Query: 598 AKGGHANVVQLLLDFPRSVHAKTQTGDTALTYACENGHTDVADLLLSYGANL-----DNS 652
A +V ++ + AK G+TAL YA D LLL A +
Sbjct: 201 ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE 260
Query: 653 TMLIEAAKGGHANVVQLL 670
T L A K H +LL
Sbjct: 261 TALDIARKKHHKECEELL 278
Score = 58.1 bits (140), Expect = 3e-09
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 242 LLECGANV------EDHNENGHTPLMEAASAGHVG---VAKILLEYGAGINTHSNEFKES 292
G + D L A + + +++ G ++ + + +
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-GNT 228
Query: 293 ALTLACYKGHLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHVEVAKLLLDS 345
AL A D ++ LL A + TAL A H E +LL +
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 46.5 bits (110), Expect = 1e-05
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 261 MEAASAGHVGVAKILLEYGAGIN-----THSNEFKESALTLAC---YKGHLDMVRFLLSA 312
A + G + +E L LA + L +V F++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 313 GADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGA 347
G + K + +TAL A++ + KLLL A
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Score = 41.1 bits (96), Expect = 8e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ AK G+TAL YA D LLL A +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Score = 33.4 bits (76), Expect = 0.22
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 10/135 (7%)
Query: 318 HKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSISYTYSRS 377
+ L A + + +G D +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPD---------AQAPEELVLHL 196
Query: 378 LVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRG 437
V+ + + V ++ G + +G + L A + ++LL A V
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN 256
Query: 438 IKGECTPLMEAASSG 452
GE T L A
Sbjct: 257 EAGE-TALDIARKKH 270
Score = 32.3 bits (73), Expect = 0.54
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 1 SLVQACSDGDVKT---VKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANV 57
L A + + V ++ G + +G + L A + ++LL A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 58 EDRGIKGECTPLMEAASSGFGKLAT 82
GE T L A +
Sbjct: 253 GTVNEAGE-TALDIARKKHHKECEE 276
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 75.7 bits (186), Expect = 2e-14
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 37/163 (22%)
Query: 119 PRPQNERSLVQACSDGDVKTVKKLLTEGRSVHET------TDEGESLLSLACSAGYYELA 172
+ L A + D+ +V + G+ + E +L LA
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV-------- 179
Query: 173 QVLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACA 232
+ A+ + +V +I +G ++ +++ GNT L YA
Sbjct: 180 -----------------------KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
Query: 233 GGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKIL 275
+++LL+ A V NE G T L A H ++L
Sbjct: 217 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 61.5 bits (149), Expect = 5e-10
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 194 LMEAASSGFIEIVRLLINHGADVNGQ------SSSGNTPLMYACA---GGHEAVVRVLLE 244
L A + + V +G D + L A +V +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 245 CGANVEDHNENGHTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD 304
G +++ +G+T L AA K+LL+ A + T NE E+AL +A K H +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKKHHKE 254
Query: 305 MVRFLLSAGADQ 316
L A A
Sbjct: 255 CEELLEQAQAGT 266
Score = 58.0 bits (140), Expect = 6e-09
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 492 NAHTEETQETALTLACC---GGFLDVADFLLKNGANIELGAS---TPLMEAAQEGHLELV 545
+ +E L LA L + DF+++NG +++ A+ T L AA + +
Sbjct: 164 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 546 RYLLDSGAQVHAKTQTGDTALTYACENGHTDVADLL 581
+ LL A V + G+TAL A + H + +LL
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 57.2 bits (138), Expect = 1e-08
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 521 NGANIELGASTPL---MEAAQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACENGHTDV 577
G + + L ++ A + L LV +++ +G + AK G+TAL YA D
Sbjct: 163 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 222
Query: 578 ADLLLSYGA-----NLDNSTMLIEAAKGGHANVVQLL 609
LLL A N T L A K H +LL
Sbjct: 223 LKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 55.3 bits (133), Expect = 4e-08
Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 8/104 (7%)
Query: 575 TDVADLLLSYGANLDNSTML---IEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALTYAC 631
D L A +L ++ A +V ++ + AK G+TAL YA
Sbjct: 156 QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA 215
Query: 632 ENGHTDVADLLLSYGA-----NLDNSTMLIEAAKGGHANVVQLL 670
D LLL A N T L A K H +LL
Sbjct: 216 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 49.9 bits (119), Expect = 2e-06
Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 14/209 (6%)
Query: 260 LMEAASAGHVGVAKILLEYGAGIN-----THSNEFKESALTLAC---YKGHLDMVRFLLS 311
L A + G + +E L LA + L +V F++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 312 AGADQEHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSSIS 371
G + K + +TAL A++ + KLLL A V D +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA-LVGTVNEAGETALDIARKKHHKE 254
Query: 372 YTYSRSLVQACSDGDVKTVKKLLTE--GRSVHETTDEGESLLSLACSAGYYELAQVLLAM 429
L++ G + + + ++D S S S +
Sbjct: 255 ---CEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASN 311
Query: 430 HANVEDRGIKGECTPLMEAASSGRQCNLN 458
+E K ++ ++G+ L
Sbjct: 312 SPGIEGLSNKEMRILMLGLDAAGKTTILY 340
Score = 41.4 bits (97), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 702 VHAKTQTGDTALTYACENGHTDVADLLLSYGANL 735
+ AK G+TAL YA D LLL A +
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Score = 37.2 bits (86), Expect = 0.017
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 488 GAKINAHTEETQETALTLACCGGFLDVADFLLKNGANIEL---GASTPLMEAAQEGHLEL 544
G ++A + TAL A D LLK A + T L A ++ H E
Sbjct: 197 GGHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 545 VRYL 548
L
Sbjct: 256 EELL 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 5e-10
Identities = 96/617 (15%), Positives = 186/617 (30%), Gaps = 210/617 (34%)
Query: 154 DEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSG-FIEIVRLLINH 212
DE + L + + L G + L+E + G F +++ L +
Sbjct: 52 DEPTTPAEL--------VGKFL-------------GYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 213 -------GADVNG--QSSSGNTPLMYACAGGHEAVVRVLLECGANVEDHNENGHTP-LME 262
G D++ + +++ + + + L
Sbjct: 91 FENCYLEGNDIHALAAKLLQEND---TTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 263 AASAGHVGVAKILLEYGA-GINTHSNE-FKESALTLACYKGHL-DMVRF---LLSAGADQ 316
A G+ A+++ +G G ++ F+E Y + D+++F LS
Sbjct: 148 AVGEGN---AQLVAIFGGQGNT---DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 317 EHKTDEMHTALMEASMDGHVEVAKLLLDSGAQSVSAYARHDFFPNDKCERPSS---ISYT 373
+++ T ++ + + L + P++ P +S
Sbjct: 202 TLDAEKVFT----QGLN----ILEWLEN---------------PSN---TPDKDYLLSIP 235
Query: 374 YSR---SLVQACSDGDVKTVKKL-LTEG---RSVHETTDEGESLLS-LACSAG-----YY 420
S ++Q V T K L T G + T + L++ +A + ++
Sbjct: 236 ISCPLIGVIQLAH--YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 421 ELAQVLLAM--------H----------ANVEDRGIKGECTP-LMEAASSGRQCNLNESV 461
+ + + + + +ED E P M + S+ Q + + V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 462 SAYARHDFFPNDKSV-----NGLQASVI------LIPG-----AKINAHTEETQETAL-- 503
+ H P K V NG + V+ L G K A + Q
Sbjct: 354 NKTNSH--LPAGKQVEISLVNGAKNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFS 410
Query: 504 --TLACCGGFLDV-ADFLLKNGANIELGASTPLMEAAQEGHLELVRYLLDSGAQVHAKTQ 560
L FL V + F + L+ A + + + L+ + +AK
Sbjct: 411 ERKLKFSNRFLPVASPF------------HSHLLVPASD---LINKDLVKNNVSFNAK-- 453
Query: 561 TGDTALT-YACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVH-- 617
D + Y +G D+ L S + E +V ++ P V
Sbjct: 454 --DIQIPVYDTFDGS-DLRVL----------SGSISE-------RIVDCIIRLP--VKWE 491
Query: 618 AKTQTGDTALTYACENGHTDVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFP--- 674
TQ T H +L +G GG + + L
Sbjct: 492 TTTQFKAT---------H------ILDFGP-------------GGASGLGVLTHRNKDGT 523
Query: 675 --RSVIGGSL-SSPSDD 688
R ++ G+L +P DD
Sbjct: 524 GVRVIVAGTLDINPDDD 540
Score = 53.5 bits (128), Expect = 2e-07
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 31/122 (25%)
Query: 31 GE-SLLSLACSAGYYELAQVL-LAMHANVEDRGI-KGECTPLMEAASSGFGKLATGDGKL 87
GE + +LA A + ++ + V RG+ P E S +G +A G++
Sbjct: 1765 GEYA--ALASLADVMSIESLVEV-----VFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 88 A---DPEVLRRLTSSVSCALD---EAAAALTRMRNENPRPQNERSLVQ-ACSDGDVKTVK 140
A E L+ + V E N N Q Q + GD++ +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIV-------NYNVENQ------QYVAA-GDLRALD 1863
Query: 141 KL 142
+
Sbjct: 1864 TV 1865
Score = 52.4 bits (125), Expect = 6e-07
Identities = 52/330 (15%), Positives = 89/330 (26%), Gaps = 129/330 (39%)
Query: 323 MHTALMEASMDGHVEVAKLLLDSGAQ--------SVSAYARHDFFPNDKC-----ERPSS 369
M L + S + A+ + + S+ ++ P + E+
Sbjct: 1631 MGMDLYKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINN--PVNLTIHFGGEKGKR 1683
Query: 370 ISYTYSRSLVQACSDGDVKTVKKLLTEGRSVHETTDEG-ESLLSLACSAGYYELAQV-LL 427
I YS + + DG +KT K T + LLS + Q L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------QFTQPALT 1737
Query: 428 AMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYAR---HDFFPNDKSVNGLQASVI 484
M +A+ P D + G S+
Sbjct: 1738 LM------------------------------EKAAFEDLKSKGLIPADATFAGH--SL- 1764
Query: 485 LIPGAKINAHTEETQE-TALTLACCGGFLDVADF--LLKN-G-------ANIELGASTPL 533
G E AL A + + ++ G ELG S
Sbjct: 1765 ---G-----------EYAAL--ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 534 MEA------AQEGHLELVRYLLDSGAQVHAKTQTGDTALTYACE--NGHTDVADLLLSYG 585
M A A E ++Y+++ + +TG + E N Y
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGK-----RTG-----WLVEIVN-----------Y- 1846
Query: 586 ANLDNSTMLIEAAKGGHANVVQLL---LDF 612
N++N + G + + L+F
Sbjct: 1847 -NVENQQYVA----AGDLRALDTVTNVLNF 1871
Score = 47.7 bits (113), Expect = 1e-05
Identities = 77/508 (15%), Positives = 136/508 (26%), Gaps = 178/508 (35%)
Query: 1 SLVQACSDGDVKTV-KKLLTE-------GRSVH---------ETTDEGESLLSLACSAGY 43
SLV+ G V LTE G +H T ++ + Y
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---Y 126
Query: 44 YELAQVLLAMHANVEDRGI-KGECTPLMEAASSGFGKLAT---GDGKLAD--PEVLRRL- 96
A+++ R K + L A G +L G G D E LR L
Sbjct: 127 IT-ARIMA-------KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLY 177
Query: 97 ---TSSVSCALDEAAAALTR---------------------MRNENPRPQNE--RS---- 126
V + +A L+ + N + P + S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 127 -----LVQACSDGDVKTVKKL-LTEG---RSVHETTDEGESLLS-LACSAG-----YYEL 171
++Q V T K L T G + T + L++ +A + ++
Sbjct: 238 CPLIGVIQLAHY--VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 172 AQVLLAM--------H----------ANVEDRGIKGECTP-LMEAASSGFIEIVRLLINH 212
+ + + + + +ED E P M + S+ E V+ +N
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 213 GADVNGQSSSG--------NTPLMYACAGGHEAVVRVLLEC-GANVEDHNENG------- 256
N +G N +G +++ + L A +
Sbjct: 356 ---TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 257 ---------------HTPLMEAASAGHVGVAKILLEYGAGINTHSNEFKESALTLACYKG 301
H+ L+ A I + + ++ F + + Y
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPA------SDLINKD----LVKNNVSFNAKDIQIPVYDT 462
Query: 302 HLDMVRFLLSAGADQEHKTDEMHTALMEASMDGHV--EVAKLLLDSGAQSVSAYARH--D 357
D G+D + + +++ + V E A H D
Sbjct: 463 F-D--------GSDLRVLSGSISERIVDCIIRLPVKWETT----------TQFKATHILD 503
Query: 358 FFPNDKCERPSSISYTYSRSLVQACSDG 385
F P S + L DG
Sbjct: 504 FGPG----GASGLG-----VLTHRNKDG 522
Score = 45.0 bits (106), Expect = 1e-04
Identities = 44/279 (15%), Positives = 72/279 (25%), Gaps = 97/279 (34%)
Query: 12 KTVKKLLTEGRSVHETTDEGESLL--------SLACSAGYY---ELAQVLLAM-HANVED 59
K + + H G S+L +L G + + AM + D
Sbjct: 1640 KAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 60 RGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCALDEAAAALTR-MRNEN 118
+K E + + + T + L T AL A ++++
Sbjct: 1699 GKLKTE--KIFKEINEHSTSY-TFRS----EKGLLSATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 119 PRPQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGE-SLLSLACSAGYYELAQVL-- 175
P + A G S+ GE + +LA A + ++
Sbjct: 1752 LIPADA---TFA---------------GHSL------GEYA--ALASLADVMSIESLVEV 1785
Query: 176 -----LAMHANVEDRGIKGECTPLMEA------------------------ASSGFIEIV 206
+ M V R G M A + +EIV
Sbjct: 1786 VFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 207 RLLINHGADVNGQSSSGNTPLMYACAGGHEAV---VRVL 242
N+ N Y AG A+ VL
Sbjct: 1845 ----NY----N---VENQQ---YVAAGDLRALDTVTNVL 1869
Score = 34.6 bits (79), Expect = 0.14
Identities = 45/275 (16%), Positives = 83/275 (30%), Gaps = 78/275 (28%)
Query: 366 RPSSISY---TYS----RSLVQACSDGDVKTVKKLLTEG--RSVHETTDEGESLLSLACS 416
RP ++S+ + + S L E + + E T+ +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQ---------LQEQFNKILPEPTEGFAADDEPTTP 57
Query: 417 AGYYELAQVLLAMHANVEDRGIKGECTPLMEAASSGRQCNLNESVSAYARHDFFPNDKSV 476
A EL L +++ + G+ ++ L E + Y ND +
Sbjct: 58 A---ELVGKFLGYVSSLVEPSKVGQFDQVLNLC-------LTEFENCYLEG----ND--I 101
Query: 477 NGLQASVILIPGAKINAHTEETQE--TALTLACCGGFLDVADFLLKNGANIELGASTPLM 534
+ L A ++ + E + TA +A + +++ L
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMA---------------KRPFDKKSNSALF 146
Query: 535 EAAQEGHLELVRYLLDSGAQVHAKTQTGDTA-----L-----TYACENGHTDVADLLLSY 584
A EG+ +L + G Q G+T L TY H V DL+
Sbjct: 147 RAVGEGNAQL--VAI-FGGQ-------GNTDDYFEELRDLYQTY-----HVLVGDLIKFS 191
Query: 585 GANLDNSTMLIEAAKGGHANVVQLL--LDFPRSVH 617
L A+ + +L L+ P +
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 1e-07
Identities = 93/651 (14%), Positives = 181/651 (27%), Gaps = 187/651 (28%)
Query: 121 PQNERSLVQACSDGDVKTVKKLLTEGRSVHETTDEGESLLSLACS-AGYYELAQVLLAMH 179
E + V + D K V+ + +S+ + +E + ++ + +G L LL+
Sbjct: 23 SVFEDAFVD---NFDCKDVQDMP---KSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 180 ANVEDRGIKGECTP----LMEAASSGFIEIVRLLINHGADVNGQSSSGNTPLMYACAGGH 235
+ + ++ LM + + + + + + + N A +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVF----AKYN 130
Query: 236 EAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG-AGINTHSNEFKESAL 294
V R L+E A +V + G G K + +
Sbjct: 131 --VSR---------LQPYLKLRQALLELRPAKNVLI------DGVLGSG------K-TWV 166
Query: 295 TL-AC--YKGHLDMVR--FLLSAGADQEHKTD-EMHTAL------MEASMDGHVEVAKLL 342
L C YK M F L+ +T EM L S H KL
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 343 LDSGAQSVSAYARHDFFPN-----DKCERPSSISY----------TYSRSLVQACSDGDV 387
+ S + + + N + + + T + + S
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS---A 283
Query: 388 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL-- 445
T + + S+ T DE +SLL +L + +L + P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------------PRRL 330
Query: 446 -MEAASSGRQCNLNESVSAYARHDFFPN----------DKSVNGLQAS---------VIL 485
+ A S + + + A D + + + S+N L+ + +
Sbjct: 331 SIIAES------IRDGL---ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 486 IPGAKINAHT-------EETQETALTLACCGGFLDVADFLLKNGANIELGASTPLMEAAQ 538
P A I + + + + L E S P +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKL------HKYSLVEKQPKESTISIPSI---- 431
Query: 539 EGHLELVRYLLDSGAQVHAK-TQTGDTALTYACENGHTDVAD----LLLSY---GANLDN 590
+LEL + L++ +H + T+ ++ D + +
Sbjct: 432 --YLEL-KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 591 STMLIEAAKGGHANVVQLLLDFPRSVHAKTQTGDTALT-----------------YACEN 633
L + LDF R + K + TA Y C+N
Sbjct: 489 RMTLFR----------MVFLDF-RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 634 GHT------DVADLLLSYGANLDNSTMLIEAAKGGHANVVQLLLDFPRSVI 678
+ D L NL S + +++++ L I
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSK---------YTDLLRIALMAEDEAI 579
Score = 45.6 bits (107), Expect = 6e-05
Identities = 77/483 (15%), Positives = 145/483 (30%), Gaps = 124/483 (25%)
Query: 43 YYELAQVLLAM--HANVEDRGIKGECTPLMEAASSGFGK--LATGDGKLADPEVLRRLTS 98
Y +L Q LL + NV I G + G GK +A +V +
Sbjct: 137 YLKLRQALLELRPAKNV---LIDG-----V----LGSGKTWVAL--------DVCL--SY 174
Query: 99 SVSCALDEAAAALTRMRNENPRPQNERSLVQA-CSDGDVKTVKKLLTEGRSVHETTDEGE 157
V C +D L ++N N P+ ++Q D +
Sbjct: 175 KVQCKMDFKIFWLN-LKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 158 SLLSLACSAGYYELAQVLLAMHANVEDRGI----KGECTPLMEAASSGFIEIVRLLINHG 213
L L S Y LL + NV++ C L+ ++ F ++
Sbjct: 233 ELRRLLKSKPY---ENCLLVL-LNVQNAKAWNAFNLSCKILL---TTRFKQV-------- 277
Query: 214 ADVNGQSSSGNTPLMYACAG-GHEAVVRVLLEC-GANVED--HNENGHTPL---MEAASA 266
D +++ + L + + V +LL+ +D P + A S
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 267 G----------HVGVAKILLEYGAGINT-HSNEFKESALTLACYKGHLDMVRF------- 308
HV K+ + +N E+++ + + F
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFD---RLSVFPPSAHIP 388
Query: 309 --LLS------AGADQEHKTDEMHTALM--EASMDGHVEVAKLLLDSGAQS--------- 349
LLS +D +++H + + + + + + L+ +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 350 -VSAYARHDFFPNDKCERPSSISYTYS---RSLVQACSDGDVKTVKKLLT-----EGRSV 400
V Y F +D P Y YS L + + + E +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 401 HETT--DEGESLLSLACSAGYYE------------LAQVLLAMHANVEDRGIKGECTPLM 446
H++T + S+L+ +Y+ L +L +E+ I + T L+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 447 EAA 449
A
Sbjct: 569 RIA 571
Score = 38.7 bits (89), Expect = 0.008
Identities = 55/380 (14%), Positives = 105/380 (27%), Gaps = 121/380 (31%)
Query: 10 DVKTVKKLLTEGRSVHETTDEGESLLSLACSAGYYELAQVLLAMHANVEDRGIKGECTPL 69
T + + S+ T DE +SLL +L + +L + P
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------------PR 328
Query: 70 MEAASSGFGKL-----ATGDG-KLADPEVLRRLTSSVSCALDEAAAALTRMRNENPRPQN 123
S + AT D K + + +LT+ + +L+ L P
Sbjct: 329 ---RLSIIAESIRDGLATWDNWKHVNCD---KLTTIIESSLN----VLE--------PAE 370
Query: 124 ERSLVQACS--DGDVKTVKKLLT------EGRSVHETTDE--GESLLSLACSAGYYELAQ 173
R + S LL+ V ++ SL+ +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 174 VLLAMHANVEDRGIKGECTPLMEAASSGFIEIVRLLINHGADVNGQSSSGNTPL---MYA 230
+ L + +E+ + R +++H S P Y
Sbjct: 431 IYLELKVKLENE-----------------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 231 CA--GGHEAVVRVLLECGANVEDHNENGHTPLMEAASAGHVGVAKILLEYG--------A 280
+ G H L +H E L + L++
Sbjct: 474 YSHIGHH------LKNI-----EHPER--MTLFR----------MVFLDFRFLEQKIRHD 510
Query: 281 GINTHSNEFKESALT-LACYKGHL------------DMVRFLLSAGAD---QEHKTDEMH 324
+++ + L L YK ++ ++ FL + ++ TD +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLR 569
Query: 325 TALMEAS----MDGHVEVAK 340
ALM + H +V +
Sbjct: 570 IALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.13
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 23/49 (46%)
Query: 12 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYY--ELAQVLLAMHANVE 58
+ +KKL ++ L L Y + A L A+ A +E
Sbjct: 20 QALKKL--------------QASLKL------YADDSAPAL-AIKATME 47
Score = 33.4 bits (75), Expect = 0.13
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 23/49 (46%)
Query: 137 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYY--ELAQVLLAMHANVE 183
+ +KKL ++ L L Y + A L A+ A +E
Sbjct: 20 QALKKL--------------QASLKL------YADDSAPAL-AIKATME 47
Score = 33.4 bits (75), Expect = 0.13
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 23/49 (46%)
Query: 388 KTVKKLLTEGRSVHETTDEGESLLSLACSAGYY--ELAQVLLAMHANVE 434
+ +KKL ++ L L Y + A L A+ A +E
Sbjct: 20 QALKKL--------------QASLKL------YADDSAPAL-AIKATME 47
Score = 32.2 bits (72), Expect = 0.28
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 474 KSVNGLQASVIL-----IPGAKINAHTE 496
+++ LQAS+ L P I A E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 0.59
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 89 DPEVLRRLTSSVSCALDEAAAAL 111
+ + L++L +S+ D++A AL
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 2.25A {Thermotoga maritima} PDB:
3n99_A
Length = 284
Score = 31.0 bits (70), Expect = 1.3
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 600 GGHANVVQLLLDFPRSVHAKTQTGDTALTYACENG-----HTDVADLLLSYGANLDNSTM 654
G H V +L+ F V K GD L A G H DV +++ +L
Sbjct: 106 GKHGGVNHVLVHFEEEVLGKLMVGDKILIKAWGQGLKLLDHPDVK--VMNIDPDLFEKLG 163
Query: 655 LIEAAKGGHANVVQLLLDFPRSVIGGSLSSPSDDSSSH 692
+ E H VV + P ++G + + S S+ +
Sbjct: 164 IQEKNGKIHVPVVAKI---PAHMMGSGIGASSSASTDY 198
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD
with sulfur, putative REDU PSI; 1.28A {Pseudomonas
aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Length = 193
Score = 30.0 bits (68), Expect = 1.9
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 10/75 (13%)
Query: 44 YELAQVLLAMHANVEDRGIKGECTPLMEAASSGFGKLATGDGKLADPEVLRRLTSSVSCA 103
Y L Q L+ + + E S G+L D + + + A
Sbjct: 128 YHLRQTLVFLDVHP---------LNKPEVMISSAQNAFDAQGRLLDDKARELIQQQLQ-A 177
Query: 104 LDEAAAALTRMRNEN 118
L + +
Sbjct: 178 LQLWVREGGSHHHHH 192
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP
analog binding, ATP-binding, metal-binding, nucleotide
biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium}
PDB: 3lpn_A* 3nag_A* 3mbi_A*
Length = 286
Score = 29.4 bits (67), Expect = 4.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
+ + LL + GA + A H F N +
Sbjct: 220 AKSSGLLREKGASKIYVSAVHGLFVNGSENK 250
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase,
transferase; 2.65A {Methanocaldococcus jannaschii} SCOP:
c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Length = 284
Score = 29.4 bits (67), Expect = 4.3
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
KLL + GA+ + A H D +
Sbjct: 222 ATAVKLLKEQGAKKIIAACVHPVLIGDALNK 252
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle
structural genomics center for infectious disease,
magnesium, metal binding; HET: AMP; 2.30A {Burkholderia
pseudomallei}
Length = 319
Score = 28.7 bits (65), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
+ A++L + GA+ V AYA H +R
Sbjct: 233 CKAAQVLKERGAKQVFAYATHPVLSGGAADR 263
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta
structure, domain duplication, phosphoribosyltransferase
type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis}
SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Length = 317
Score = 28.7 bits (65), Expect = 6.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
A L+++GA+ V A H ER
Sbjct: 234 TLAANALVENGAKEVYACCTHPVLSGPAVER 264
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 28.7 bits (65), Expect = 7.1
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
A LL +GA V A H F R
Sbjct: 230 CHAADKLLSAGATRVYAILTHGIFSGPAISR 260
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 28.5 bits (64), Expect = 8.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 336 VEVAKLLLDSGAQSVSAYARHDFFPNDKCER 366
+ A+ L + GA + A H +D R
Sbjct: 289 LAAAETLKERGAYKIFVMATHGLLSSDAPRR 319
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 28.2 bits (63), Expect = 8.9
Identities = 13/78 (16%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 268 HVGVAKILLEYGAGINTHSNEFKESALTLACYKGHLD-MVRFLLSAGADQEHKTDEMHTA 326
H G++ GA + H EF + + R L G + T
Sbjct: 75 HYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETV 134
Query: 327 LMEASMDGHVEVAKLLLD 344
+ L D
Sbjct: 135 EKTRERVHPPQNPLPLRD 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.366
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,649,104
Number of extensions: 643636
Number of successful extensions: 5161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2056
Number of HSP's successfully gapped: 943
Length of query: 739
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 638
Effective length of database: 3,881,772
Effective search space: 2476570536
Effective search space used: 2476570536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.0 bits)