Query psy9036
Match_columns 143
No_of_seqs 118 out of 387
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:20:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082|consensus 100.0 8.8E-29 1.9E-33 231.1 9.1 82 29-110 110-191 (1075)
2 KOG2083|consensus 99.9 2E-28 4.4E-33 223.4 5.9 85 26-110 23-107 (643)
3 KOG1288|consensus 99.9 1.2E-27 2.7E-32 222.0 7.4 103 31-134 65-170 (945)
4 TIGR00930 2a30 K-Cl cotranspor 99.9 6E-26 1.3E-30 214.8 5.8 83 28-110 73-155 (953)
5 KOG2082|consensus 98.8 5.6E-10 1.2E-14 106.1 -0.3 44 99-142 130-179 (1075)
6 KOG2083|consensus 98.4 3.7E-08 8.1E-13 91.4 -0.1 44 99-142 46-95 (643)
7 PF00324 AA_permease: Amino ac 97.7 4.8E-05 1E-09 65.9 4.2 72 38-110 1-72 (478)
8 KOG1288|consensus 97.6 1.7E-05 3.8E-10 75.6 0.9 40 103-142 87-132 (945)
9 TIGR00930 2a30 K-Cl cotranspor 96.9 0.00027 5.9E-09 68.3 0.4 41 102-142 97-143 (953)
10 TIGR00911 2A0308 L-type amino 94.1 0.025 5.4E-07 49.7 1.6 96 12-109 22-119 (501)
11 TIGR00905 2A0302 transporter, 93.4 0.15 3.3E-06 44.5 5.2 80 30-110 6-85 (473)
12 COG0531 PotE Amino acid transp 91.8 0.34 7.4E-06 40.8 5.1 80 27-109 8-87 (466)
13 PRK11387 S-methylmethionine tr 91.3 0.38 8.3E-06 42.1 5.0 77 30-108 13-89 (471)
14 TIGR00909 2A0306 amino acid tr 90.3 0.41 8.9E-06 40.7 4.2 76 31-109 3-78 (429)
15 TIGR00906 2A0303 cationic amin 88.5 0.58 1.3E-05 42.6 4.0 77 29-108 26-103 (557)
16 PRK10644 arginine:agmatin anti 87.3 0.9 1.9E-05 39.3 4.3 77 28-108 5-81 (445)
17 PRK10580 proY putative proline 86.4 1.5 3.1E-05 38.2 5.1 77 30-109 8-84 (457)
18 PF08403 AA_permease_N: Amino 85.6 0.42 9.1E-06 33.9 1.2 17 10-26 36-52 (74)
19 PRK10836 lysine transporter; P 85.1 1.3 2.8E-05 39.0 4.2 73 29-103 13-85 (489)
20 TIGR01773 GABAperm gamma-amino 85.0 0.78 1.7E-05 39.7 2.8 78 29-109 10-87 (452)
21 PRK10249 phenylalanine transpo 84.5 1.8 4E-05 37.8 4.9 77 30-109 20-96 (458)
22 PRK10655 potE putrescine trans 83.7 1.4 3.1E-05 37.8 3.8 78 29-110 4-81 (438)
23 TIGR03428 ureacarb_perm permea 82.4 2.9 6.3E-05 36.7 5.3 76 30-107 12-87 (475)
24 PRK10238 aromatic amino acid t 81.7 1.3 2.9E-05 38.7 2.9 75 30-107 11-85 (456)
25 PRK11357 frlA putative fructos 81.1 1.6 3.5E-05 37.7 3.2 78 30-109 7-85 (445)
26 PRK11049 D-alanine/D-serine/gl 80.8 2.3 5E-05 37.3 4.1 77 29-108 18-94 (469)
27 PRK15049 L-asparagine permease 79.9 2.1 4.5E-05 38.3 3.5 76 30-108 27-102 (499)
28 TIGR00908 2A0305 ethanolamine 79.7 1.8 3.9E-05 37.3 3.0 77 30-109 6-82 (442)
29 PRK11021 putative transporter; 77.5 6.6 0.00014 33.5 5.8 65 43-109 10-74 (410)
30 PRK10197 gamma-aminobutyrate t 75.1 6.3 0.00014 34.4 5.1 62 46-109 6-67 (446)
31 TIGR00907 2A0304 amino acid pe 74.6 6.4 0.00014 34.4 5.1 74 30-106 11-86 (482)
32 PRK10435 cadB lysine/cadaverin 74.0 4.8 0.0001 34.9 4.1 75 28-106 2-76 (435)
33 TIGR03810 arg_ornith_anti argi 73.8 10 0.00022 33.2 6.1 77 32-109 2-78 (468)
34 TIGR00913 2A0310 amino acid pe 65.6 7.3 0.00016 33.9 3.4 62 45-106 15-76 (478)
35 PRK10746 putative transport pr 65.3 15 0.00031 32.5 5.3 73 32-107 11-83 (461)
36 PRK15238 inner membrane transp 60.9 13 0.00029 32.8 4.2 74 30-108 6-80 (496)
37 KOG1287|consensus 53.9 12 0.00026 34.7 2.8 80 27-108 8-88 (479)
38 TIGR00910 2A0307_GadC glutamat 45.0 43 0.00093 30.1 4.9 74 30-109 3-77 (507)
39 PF02323 ELH: Egg-laying hormo 43.9 24 0.00052 30.2 2.9 40 66-106 9-54 (255)
40 PHA02764 hypothetical protein; 38.1 1E+02 0.0022 28.1 6.1 42 68-110 48-89 (399)
41 PF00197 Kunitz_legume: Trypsi 34.4 16 0.00035 28.8 0.5 22 91-112 5-27 (176)
42 TIGR00837 araaP aromatic amino 33.9 78 0.0017 26.6 4.5 61 47-109 10-70 (381)
43 PF13520 AA_permease_2: Amino 31.3 77 0.0017 26.7 4.1 49 59-109 24-73 (426)
44 smart00452 STI Soybean trypsin 29.1 22 0.00048 28.1 0.5 20 91-110 4-24 (172)
45 KOG1303|consensus 27.9 2.3E+02 0.005 25.8 6.7 67 30-98 35-101 (437)
46 TIGR00261 traB pheromone shutd 27.9 72 0.0016 28.6 3.5 75 14-91 222-307 (380)
47 cd00178 STI Soybean trypsin in 22.3 36 0.00079 26.8 0.5 19 91-109 5-24 (172)
48 smart00707 RPEL Repeat in Dros 21.7 31 0.00066 20.0 0.0 14 10-23 6-19 (26)
49 PF09964 DUF2198: Uncharacteri 20.7 2.5E+02 0.0054 20.1 4.4 46 38-88 6-59 (74)
No 1
>KOG2082|consensus
Probab=99.95 E-value=8.8e-29 Score=231.07 Aligned_cols=82 Identities=39% Similarity=0.739 Sum_probs=79.7
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
+..++||+.|||+||++|||||+||+|+.||||.||+.++++++++|+++|++|++|||||||||.|++||+||||+|+.
T Consensus 110 ~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 110 KAARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred CccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q psy9036 109 IY 110 (143)
Q Consensus 109 i~ 110 (143)
+-
T Consensus 190 GP 191 (1075)
T KOG2082|consen 190 GP 191 (1075)
T ss_pred Cc
Confidence 75
No 2
>KOG2083|consensus
Probab=99.95 E-value=2e-28 Score=223.37 Aligned_cols=85 Identities=47% Similarity=0.812 Sum_probs=82.3
Q ss_pred CCCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceech
Q psy9036 26 SNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQ 105 (143)
Q Consensus 26 ~~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~ 105 (143)
+.+++.|||||+|||++|++||||||+|||+||||||||+..+.++++++.+++++|++|.|||+|||++|+||+||||+
T Consensus 23 ~~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis 102 (643)
T KOG2083|consen 23 LTKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS 102 (643)
T ss_pred ccCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh
Q psy9036 106 KSQIY 110 (143)
Q Consensus 106 ~swi~ 110 (143)
++.+-
T Consensus 103 ~slg~ 107 (643)
T KOG2083|consen 103 RSLGP 107 (643)
T ss_pred ecccc
Confidence 99854
No 3
>KOG1288|consensus
Probab=99.94 E-value=1.2e-27 Score=222.02 Aligned_cols=103 Identities=32% Similarity=0.573 Sum_probs=88.5
Q ss_pred ceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhhh
Q psy9036 31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIY 110 (143)
Q Consensus 31 ~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi~ 110 (143)
.|+|||+|||+|+.||||++++|||+||||||||++.++++++++|.|.++|++|+|||+|||.|++||+||||+|+.+.
T Consensus 65 ~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 65 AKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred ccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred h---hhhhhhhhhhhhhhhccccceee
Q psy9036 111 I---NRGDVLSCVVVCIITTLSLSAIT 134 (143)
Q Consensus 111 g---~~giv~~~~~v~~~t~~s~sai~ 134 (143)
- --|.+|- +.-.+.++|+.|++-
T Consensus 145 EfGGSIGllFf-~anV~~~am~isG~v 170 (945)
T KOG1288|consen 145 EFGGSIGLLFF-VANVFNCAMNISGFV 170 (945)
T ss_pred ccCCeeeehhh-HHHHhcchhhhhhhh
Confidence 3 2232221 223455666666543
No 4
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.92 E-value=6e-26 Score=214.76 Aligned_cols=83 Identities=57% Similarity=0.984 Sum_probs=79.9
Q ss_pred CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
++++|||||.|||+||++||||+++|+|++||+|+||++.++++++++++++++|++|+|||+|||.+++||+||+++|+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q psy9036 108 QIY 110 (143)
Q Consensus 108 wi~ 110 (143)
.+-
T Consensus 153 lGp 155 (953)
T TIGR00930 153 LGP 155 (953)
T ss_pred hCc
Confidence 765
No 5
>KOG2082|consensus
Probab=98.82 E-value=5.6e-10 Score=106.10 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=41.0
Q ss_pred ccceechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036 99 ECMSYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG 142 (143)
Q Consensus 99 G~Yyli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G 142 (143)
|.-+.||..|+||.+|+ |++||+||++|++|+|||||||.||+|
T Consensus 130 GVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG 179 (1075)
T KOG2082|consen 130 GVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG 179 (1075)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 45578899999999996 999999999999999999999999998
No 6
>KOG2083|consensus
Probab=98.44 E-value=3.7e-08 Score=91.39 Aligned_cols=44 Identities=34% Similarity=0.357 Sum_probs=41.4
Q ss_pred ccceechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036 99 ECMSYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG 142 (143)
Q Consensus 99 G~Yyli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G 142 (143)
|....+|.+|++||+|| ++++..||+||++|.+||+|||+||+|
T Consensus 46 gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G 95 (643)
T KOG2083|consen 46 GVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG 95 (643)
T ss_pred HHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC
Confidence 77788999999999996 788899999999999999999999998
No 7
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.66 E-value=4.8e-05 Score=65.94 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=67.0
Q ss_pred eeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhhh
Q psy9036 38 GVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIY 110 (143)
Q Consensus 38 GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi~ 110 (143)
+|+.+++-++.|.-+|++.+++++++|.....+..+++.++.+++..|+++++++.. ..||.|+.++|...-
T Consensus 1 hv~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~Gg~y~y~~~~lg~ 72 (478)
T PF00324_consen 1 HVFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAGGFYAYASRGLGP 72 (478)
T ss_pred CEEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-cccchhhhhhhccCC
Confidence 578899999999999999999999999999999999999999999999999999977 899999999986554
No 8
>KOG1288|consensus
Probab=97.62 E-value=1.7e-05 Score=75.62 Aligned_cols=40 Identities=35% Similarity=0.522 Sum_probs=35.5
Q ss_pred echhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036 103 YSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG 142 (143)
Q Consensus 103 li~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G 142 (143)
.+|-.|++||+|+ .+++|.+.+.|++|.|||+|||.|+||
T Consensus 87 FLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GG 132 (945)
T KOG1288|consen 87 FLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGG 132 (945)
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecC
Confidence 3466688888885 899999999999999999999999998
No 9
>TIGR00930 2a30 K-Cl cotransporter.
Probab=96.88 E-value=0.00027 Score=68.34 Aligned_cols=41 Identities=49% Similarity=0.605 Sum_probs=37.7
Q ss_pred eechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036 102 SYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG 142 (143)
Q Consensus 102 yli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G 142 (143)
+.+|.+|+++++|+ +++|++++++|++|.|+++|||.+++|
T Consensus 97 iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG 143 (953)
T TIGR00930 97 LFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG 143 (953)
T ss_pred eeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 66799999999995 788899999999999999999999987
No 10
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=94.13 E-value=0.025 Score=49.70 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCCCChhhhhCCCCC-CCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHHHHHHHHHHHh
Q psy9036 12 PDGTSIADATGGAGS-NTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHS-LVIIGISYVVCIITTLSLSAI 89 (143)
Q Consensus 12 ~~Rpsl~~l~~~~~~-~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~-l~ii~ls~~it~lT~lSlsAI 89 (143)
..|.+++|+++++.+ .+-++|+|.++.+.+-. -+++|.-+|.-.+.+..++|-... +...+++.++.+..+++...+
T Consensus 22 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~v-g~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aEL 100 (501)
T TIGR00911 22 GRKKSVSASTVDGGEAVALKKEITLLSGVGIIV-GTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAEL 100 (501)
T ss_pred cccccccccccccccccccCccccHhHhhHhhe-eceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888887643 34477899887765532 345666667777778888874332 333456667888999999999
Q ss_pred HhcCcccCCccceechhhhh
Q psy9036 90 TTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 90 aTNg~v~~GG~Yyli~~swi 109 (143)
++- ..+.||.|...++.++
T Consensus 101 as~-~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 101 GTT-IPKSGGEYNYILEVFG 119 (501)
T ss_pred Hhh-cCCCCchhhhHHhHhC
Confidence 987 4578999999988654
No 11
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=93.38 E-value=0.15 Score=44.54 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=62.1
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
++|+|.++.+++ .+-+++|.-+|.--+.+..++|-...+.-.+++.+..++.+++...+++.-.-++||.|...++.++
T Consensus 6 ~~~l~~~~~~~l-~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 6 SKKLGLFALTAL-VIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred CCCccHHHHHHH-HHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 568888777654 4566888878887778777887666666677777888899999999999844448999999988765
Q ss_pred h
Q psy9036 110 Y 110 (143)
Q Consensus 110 ~ 110 (143)
-
T Consensus 85 ~ 85 (473)
T TIGR00905 85 P 85 (473)
T ss_pred c
Confidence 3
No 12
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=91.78 E-value=0.34 Score=40.83 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechh
Q psy9036 27 NTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQK 106 (143)
Q Consensus 27 ~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~ 106 (143)
+++++|+|+++.++.-..-++.|.-.|.=.+-+...+ .......+++.++..+.+++...+++ ..-+.||.|...++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~GG~y~~~~~ 84 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PAAILAWLIAGIIILFLALSYAELSS-AIPSAGGAYAYAKR 84 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeeehhh
Confidence 3456799999988888888888844444444444443 12222246666666667999999999 68888999999998
Q ss_pred hhh
Q psy9036 107 SQI 109 (143)
Q Consensus 107 swi 109 (143)
+.+
T Consensus 85 ~~g 87 (466)
T COG0531 85 ALG 87 (466)
T ss_pred hcC
Confidence 765
No 13
>PRK11387 S-methylmethionine transporter; Provisional
Probab=91.30 E-value=0.38 Score=42.05 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=61.2
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
++++|.++.+.+ .+=++.|.=+|.-.|-+...+|-...++..+++.++.++..+|+..+++. ..+.||.|...++..
T Consensus 13 ~r~L~~~~~~~l-~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aGG~y~y~~~~~ 89 (471)
T PRK11387 13 KRTMKVRHLVML-SLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETGAFHVYAARYL 89 (471)
T ss_pred hhcCcHHHHHHH-HHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHhc
Confidence 457887766544 44577888899999999999996556777888888999999999999997 456789998877653
No 14
>TIGR00909 2A0306 amino acid transporter.
Probab=90.32 E-value=0.41 Score=40.72 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=57.5
Q ss_pred ceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 31 ~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
+|+|.++.+.+-. -+++|.-.|...+.+.+.+|-. .....+++.+..+..+++...+++. ..+.||.|...++.++
T Consensus 3 r~l~~~~~~~~~i-~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 3 RELGLFDLTMLGI-GAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAM-LPVAGSPYTYAYEAMG 78 (429)
T ss_pred ccccHHHHHHHHH-hhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcceeeHHHHhC
Confidence 5778877765543 4567877888888888888864 4455666777788899999999987 4467999999888654
No 15
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=88.51 E-value=0.58 Score=42.56 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=58.6
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHh-hhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVV-GEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiV-G~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
-++++|.++-+.+- +-.+.|.-+|.-.|.+. .++|-. ..+-.+++.+..++.+++.+.+++. ..++||.|...++.
T Consensus 26 L~r~L~~~~l~~l~-ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 26 MKRCLTTWDLMALG-IGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAGSAYLYSYVT 102 (557)
T ss_pred hhhcCCHHHHHHHH-hhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcceeeHHHH
Confidence 35689998776553 34467777888888876 457765 5555677888899999999999997 55789999998875
Q ss_pred h
Q psy9036 108 Q 108 (143)
Q Consensus 108 w 108 (143)
.
T Consensus 103 ~ 103 (557)
T TIGR00906 103 V 103 (557)
T ss_pred h
Confidence 4
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=87.29 E-value=0.9 Score=39.29 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=55.9
Q ss_pred CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
++++|+|.++.+.+ .+=+++|.=+|.=-+.+....| ..+.-.+++.+..+..+++..++++. ..+.||.|...++.
T Consensus 5 ~~~~~lg~~~~~~l-~vg~~iGsGif~~~~~~a~~g~--~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG~y~~~~~~ 80 (445)
T PRK10644 5 ADAHKVGLIPVTLM-VAGNIMGSGVFLLPANLASTGG--IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGGSYAYARRC 80 (445)
T ss_pred ccCCCcCHHHHHHH-HHhhHhhhHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHHH
Confidence 35679999988877 6677888866654566554432 34455566677788999999999987 55789999988875
Q ss_pred h
Q psy9036 108 Q 108 (143)
Q Consensus 108 w 108 (143)
+
T Consensus 81 ~ 81 (445)
T PRK10644 81 F 81 (445)
T ss_pred c
Confidence 4
No 17
>PRK10580 proY putative proline-specific permease; Provisional
Probab=86.42 E-value=1.5 Score=38.23 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=60.9
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
+++++.++- +.=.+=++.|.=+|.-.+.....+|-. .++-.+++.++.++.++++..+++. ....||.|...++.++
T Consensus 8 ~r~L~~~~~-~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 8 KRGLSTRHI-RFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVH-NPAASSFSRYAQENLG 84 (457)
T ss_pred cccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHcC
Confidence 346777654 444566778888999999999999964 5777888888999999999999997 5567999998887544
No 18
>PF08403 AA_permease_N: Amino acid permease N-terminal; InterPro: IPR013612 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins appear to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found to the N terminus of the amino acid permease domain (IPR004841 from INTERPRO) in metazoan Na-K-Cl cotransporters.
Probab=85.65 E-value=0.42 Score=33.90 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=13.4
Q ss_pred CCCCCCChhhhhCCCCC
Q psy9036 10 RAPDGTSIADATGGAGS 26 (143)
Q Consensus 10 ~~~~Rpsl~~l~~~~~~ 26 (143)
.+..||||+|||+..++
T Consensus 36 ~k~~RPSL~~Lh~~~~~ 52 (74)
T PF08403_consen 36 QKKSRPSLDELHSQLEK 52 (74)
T ss_pred cccCCCCHHHHHHHhhc
Confidence 44589999999997543
No 19
>PRK10836 lysine transporter; Provisional
Probab=85.10 E-value=1.3 Score=39.05 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=59.7
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCcccee
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSY 103 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyl 103 (143)
-++++|.++.+.+ .+=+++|.=+|.-.|-+..++|-...+.-.+++.++.++.++|...+++. ..+.||.|..
T Consensus 13 l~r~L~~~~~~~l-~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~sGg~y~y 85 (489)
T PRK10836 13 LRRELKARHLTMI-AIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPVSGSFATY 85 (489)
T ss_pred ccccCcHHHHHHH-HHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHH
Confidence 3567888776543 45568899999999999999997667788888889999999999999999 4568999853
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=85.02 E-value=0.78 Score=39.68 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=60.5
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
.++++++++.+++ .+-+++|.=+|.-.+-...++|- .+++..+++.++.+..+++++.+++. ..+.||.|...++.+
T Consensus 10 ~~~~L~~~~~~~i-~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 10 LPNGLKTRHVTML-SIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPDTGSFSTYADDAI 86 (452)
T ss_pred HhCcCcHHHHHHH-HHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHh
Confidence 4557887766444 45567888899999999999996 46667778888889999999999986 445789998877754
Q ss_pred h
Q psy9036 109 I 109 (143)
Q Consensus 109 i 109 (143)
+
T Consensus 87 g 87 (452)
T TIGR01773 87 G 87 (452)
T ss_pred C
Confidence 4
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=84.48 E-value=1.8 Score=37.85 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=60.4
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
+++++.++-+. =.+=+++|.=+|+-.|-...++|- .+++..+++.++.++..+|+.++++. ....||.|...++.++
T Consensus 20 ~r~l~~~~~~~-i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~Gg~~~y~~~~~g 96 (458)
T PRK10249 20 HRGLHNRHIQL-IALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSGSFAHFAYKYWG 96 (458)
T ss_pred hccCcHhHhhh-hhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhC
Confidence 45677755433 344557899999999999999997 47777888889999999999999998 5557899988887543
No 22
>PRK10655 potE putrescine transporter; Provisional
Probab=83.67 E-value=1.4 Score=37.78 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=56.7
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
+++|+|.++.+.+ .+=+|+|.-.|.=-+. +.++|- .+++..+++.++.++.+++...+++. ..+.||.|...++.+
T Consensus 4 ~~~~l~~~~~~~l-~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~GG~y~y~~~~~ 79 (438)
T PRK10655 4 KSNKMGVVQLTIL-TAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSGGMGGYAEYAF 79 (438)
T ss_pred ccCcccHHHHHHH-HHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCchHHHHHHHc
Confidence 4568888776655 3467777766553444 456675 56677778888889999999999876 667899999998865
Q ss_pred hh
Q psy9036 109 IY 110 (143)
Q Consensus 109 i~ 110 (143)
+-
T Consensus 80 G~ 81 (438)
T PRK10655 80 GK 81 (438)
T ss_pred Cc
Confidence 53
No 23
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=82.37 E-value=2.9 Score=36.65 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=55.6
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
+++||.++=+.+.--.-..+.-+|.=++-...++|- ..+.-.+++.+..++.++|++.+++- ....||.|+..++.
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aGG~Y~~~~~~ 87 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISGAIYQWSRRM 87 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHH
Confidence 347888776555544322345667777888888887 45666677788899999999999997 55789999888764
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=81.67 E-value=1.3 Score=38.69 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=59.9
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
+++++.++.+++ .+=+++|.=+|+-.|-++.++|- ..+.-.+++.++.++.++|+..+++.- ..+||.|+..++.
T Consensus 11 ~r~L~~~~~~~i-~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aGg~y~~~~~~ 85 (456)
T PRK10238 11 KRGLKNRHIQLI-ALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-PVAGSFSHFAYKY 85 (456)
T ss_pred hccCcHHHHHHH-HhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 457777777554 45567888899999999999997 566777888889999999999999984 4578888776664
No 25
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=81.13 E-value=1.6 Score=37.67 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=57.5
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccch-hhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIG-HSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~-~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
++++|.++.+.+-.-. +.|.=+|.-.+.+..++|-. ..++..+++.+..+..+++.+.+++- ..+.||.|...++.+
T Consensus 7 ~r~l~~~~~~~l~vg~-~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~-~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 7 QRKLGFWAVLAIAVGT-TVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTA-YPENGADYVYLKNAG 84 (445)
T ss_pred cccccHHHHHHHHHHh-heechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCceeeHHHhc
Confidence 4588888776655432 34555677788887777733 35556677888899999999999997 456799999998775
Q ss_pred h
Q psy9036 109 I 109 (143)
Q Consensus 109 i 109 (143)
.
T Consensus 85 g 85 (445)
T PRK11357 85 S 85 (445)
T ss_pred C
Confidence 4
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=80.80 E-value=2.3 Score=37.29 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=58.7
Q ss_pred CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
-++++|.++.+.+- +=.++|.=+|+-.|-...++|- ..+...+++.++.+...+|++++++.+.. .|+.|...++.+
T Consensus 18 l~r~l~~~~~~~i~-vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~~ 94 (469)
T PRK11049 18 LRRNLTNRHIQLIA-IGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDLL 94 (469)
T ss_pred hhccCcHHHHHHHH-HhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHh
Confidence 35578888776554 6779999999999999999997 45555667777889999999999997555 445666666654
No 27
>PRK15049 L-asparagine permease; Provisional
Probab=79.88 E-value=2.1 Score=38.26 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
+++++.++.+.+ .+=.++|.=+|+-.|-+..++|- ..++-.+++.++.++..+|+..+++. ....||.|...++..
T Consensus 27 ~r~L~~~~~~~i-~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 27 HKAMGNRQVQMI-AIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPSSGSFVSYAREFL 102 (499)
T ss_pred hccCCHhHhHHH-hhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHh
Confidence 567888776654 55678899999999999999997 45667777888899999999999998 556899998887754
No 28
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=79.74 E-value=1.8 Score=37.27 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=52.4
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
++++|.++.+.+..- .+.| -.|.-.+....++|-...+...++..++.+..+++.+.+++. ..++||.|...++.++
T Consensus 6 ~r~l~~~~~~~l~~~-~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 6 KKTLATWQLWGIGVG-YVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPTAGGGYGFARRAFG 82 (442)
T ss_pred hccCCHHHHHHhHHH-HHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHhC
Confidence 347888777666442 3444 344455666667776554555566666778889999999997 5567999998877654
No 29
>PRK11021 putative transporter; Provisional
Probab=77.50 E-value=6.6 Score=33.54 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 43 CLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 43 ~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
++=+|+|.=.|.-.|-+..++|- .++.-.+++.+..+..+++.+..++. ..+.||.|...++.++
T Consensus 10 ~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~aGG~y~y~~~~~G 74 (410)
T PRK11021 10 LSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPHAGGPAHFVGMAFG 74 (410)
T ss_pred HHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHhHHHHhC
Confidence 55678999999999999999995 66777888888999999999999997 4567999999888654
No 30
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=75.08 E-value=6.3 Score=34.41 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 46 NIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 46 nI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
+++|.=+|+--|-...++|- ..++-..++.++.++.+++...+++. ..+.||.|...++.++
T Consensus 6 ~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~~Gg~y~y~~~~~G 67 (446)
T PRK10197 6 GVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPDTGSFSTYADKAIG 67 (446)
T ss_pred chhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHcC
Confidence 47888899999999999996 47777778888889999999999998 5568999999988755
No 31
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=74.65 E-value=6.4 Score=34.35 Aligned_cols=74 Identities=14% Similarity=-0.006 Sum_probs=50.2
Q ss_pred cceeeeEEeeehhhhHHHHH--HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWG--VMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQK 106 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~G--VilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~ 106 (143)
++++|.++-+.+-.- +.| .-+|.=.+-...++|-...+.-.+++.++.+..++++.++++. ..+.||.|...++
T Consensus 11 ~r~l~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~Gg~y~~~~~ 86 (482)
T TIGR00907 11 KREFSLWSIFGFAFS--ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSGGQYFWSAK 86 (482)
T ss_pred ecccchhHHHHHHHH--HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCccHHHHHHH
Confidence 357888764433322 222 2344444555667777666666777888899999999999997 5578999986665
No 32
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=74.00 E-value=4.8 Score=34.87 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechh
Q psy9036 28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQK 106 (143)
Q Consensus 28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~ 106 (143)
++++|+|.++.+.+= +=+|+|.=.|.--+- +.++|-. .+.-.+++.+..++.+++...+++. ..+.||.|...++
T Consensus 2 ~~~~~lg~~~~~~l~-vg~~IGsGif~lp~~-~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~GG~y~y~~~ 76 (435)
T PRK10435 2 SSAKKIGLFACTGVV-AGNMMGSGIALLPAN-LASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQGGPIAYAGE 76 (435)
T ss_pred CCCCcCCHHHHHHHH-HhhHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHH
Confidence 356789988776554 778889877755443 4566643 4555566677788999999999998 4567899988876
No 33
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=73.83 E-value=10 Score=33.17 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=56.6
Q ss_pred eeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 32 KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 32 k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
|+|.++.+ .=.+=+|+|.=+|.--+.+...+|-...+.-.+++.+..+..+++.+.+++.-.-.+||.|...++.++
T Consensus 2 ~lgl~~~~-~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG 78 (468)
T TIGR03810 2 KLGLGALT-ALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFG 78 (468)
T ss_pred CCCHHHHH-HHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcC
Confidence 55555443 234566778878888888998998655566667778888889999999999843335799999888644
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=65.62 E-value=7.3 Score=33.89 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechh
Q psy9036 45 LNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQK 106 (143)
Q Consensus 45 lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~ 106 (143)
=+++|.=+|.-.+....++|-...+.-.+++.++.+..++++..+++.-...+||.|...++
T Consensus 15 g~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~ 76 (478)
T TIGR00913 15 GGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASR 76 (478)
T ss_pred hccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 34667778888999999999655566677778889999999999999733344444424444
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=65.25 E-value=15 Score=32.45 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=56.8
Q ss_pred eeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036 32 KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS 107 (143)
Q Consensus 32 k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s 107 (143)
+++.++ ++.=.+=+++|.=+|+--+-...++|- ..++-.+++.++.++..+++.++++. ..+.||.|...+|.
T Consensus 11 ~L~~~~-~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~sGg~~~y~~~~ 83 (461)
T PRK10746 11 GLEARH-IELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPVTGSFAVYAHRY 83 (461)
T ss_pred cCcHHH-HHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 455543 333456678899999999999999997 46666677788889999999999998 45688899888664
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=60.88 E-value=13 Score=32.82 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=42.4
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHH-HHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLR-MAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLR-lgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
++|+|+++=+.+ .+-+++| +| ++--..++|...-+..++.+....+..+++...+++.-.-+.||.|...++..
T Consensus 6 ~~~l~~~~l~~~-~~~~vig----~~~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 6 KKKLSLIGLILM-IFTSVFG----FANSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred cCeeeHHHHHHH-HHHHHHh----CCchHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 568888765433 2334444 23 12123355654333333333344567889999999962223699999887754
No 37
>KOG1287|consensus
Probab=53.90 E-value=12 Score=34.72 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=64.6
Q ss_pred CCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhcc-chhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceech
Q psy9036 27 NTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAG-IGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQ 105 (143)
Q Consensus 27 ~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aG-l~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~ 105 (143)
.+.++|+|.+.||++=.- ||.|-=.|.==.=|.-++| ++.++++...|.++++.-++.-....|- --++||.|..+.
T Consensus 8 ~~~~kkigll~~v~livg-~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksGgd~ayi~ 85 (479)
T KOG1287|consen 8 VQLKKKIGLLSGVSLIVG-NIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSGGDYAYIS 85 (479)
T ss_pred ccccceeeeecceeEEEE-eeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcchhhHH
Confidence 445789999999998544 6888888887777888884 6677777788899999999999999998 567899998877
Q ss_pred hhh
Q psy9036 106 KSQ 108 (143)
Q Consensus 106 ~sw 108 (143)
+..
T Consensus 86 ~af 88 (479)
T KOG1287|consen 86 EAF 88 (479)
T ss_pred HHh
Confidence 653
No 38
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=45.05 E-value=43 Score=30.09 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=43.3
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH-HHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYV-VCIITTLSLSAITTNGEVKGGECMSYSQKSQ 108 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~-it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw 108 (143)
++|++.|+-+++- .+.+.=+|-==...+.|+ .++...+++.+ ..+..+++...+++.-.-+.||.|.-.++..
T Consensus 3 ~~~l~~~~~~~~~-----~~~v~~~~~~~~~a~~G~-~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~ 76 (507)
T TIGR00910 3 AKKLSLFGFFAIT-----ASMVLAVYEYPTFATSGF-HLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTL 76 (507)
T ss_pred CcEeeHHHHHHHH-----HHHHHHHHhhHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhcc
Confidence 4567776655442 233334441113567773 33333333333 3566899999999973225799999988875
Q ss_pred h
Q psy9036 109 I 109 (143)
Q Consensus 109 i 109 (143)
+
T Consensus 77 G 77 (507)
T TIGR00910 77 G 77 (507)
T ss_pred C
Confidence 4
No 39
>PF02323 ELH: Egg-laying hormone precursor ; InterPro: IPR003424 This family consists of egg-laying hormone (ELH) precursor and atrial gland peptides from the little (Aplysia parvula) and california (Aplysia californica) sea hares. The family also includes ovulation prohormone precursor from the great pond snail (Lymnaea stagnalis). This family thus represents a conserved gastropoda ovulation and egg production prohormone. Note that many of the proteins present are further cleaved to give individual peptides []. Neuropeptidergic bag cells of the marine mollusc A. californica synthesize an egg-laying hormone (ELH) precursor protein which is cleaved to generate several bioacitve peptides including ELH, bag cell peptides (BCP) and acidic peptide (AP) [].; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=43.85 E-value=24 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH------hHhcCcccCCccceechh
Q psy9036 66 GHSLVIIGISYVVCIITTLSLSA------ITTNGEVKGGECMSYSQK 106 (143)
Q Consensus 66 ~~~l~ii~ls~~it~lT~lSlsA------IaTNg~v~~GG~Yyli~~ 106 (143)
..++. +++|+++..+++-|.|+ .+||..+++-|+|.+++-
T Consensus 9 a~~mf-vi~Cl~lSslc~ss~S~sv~Gk~f~~~Ravk~ss~~vv~s~ 54 (255)
T PF02323_consen 9 ANTMF-VILCLWLSSLCVSSQSISVHGKDFYTNRAVKSSSPEVVLSP 54 (255)
T ss_pred hhhhH-HHHHHHHhhhhhhhhhhhccccccccccccccCCceEEeCc
Confidence 34444 67788888888888887 579999998888887653
No 40
>PHA02764 hypothetical protein; Provisional
Probab=38.07 E-value=1e+02 Score=28.13 Aligned_cols=42 Identities=24% Similarity=0.079 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhhh
Q psy9036 68 SLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIY 110 (143)
Q Consensus 68 ~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi~ 110 (143)
.+...+++.++++..+++-+.+++- ..+.||.|..++|.++-
T Consensus 48 lLLAWLLGGLlALPgAL~YAELGSA-mPrAGGdYVYISRAFGP 89 (399)
T PHA02764 48 LLFAILIGAVFEIPLLLMYYKLTTK-FPLNGGDYAYIRTAFSS 89 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCceEEEhHHhhCc
Confidence 4455566777788888888888887 67889999999998765
No 41
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=34.39 E-value=16 Score=28.76 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=17.1
Q ss_pred hcC-cccCCccceechhhhhhhh
Q psy9036 91 TNG-EVKGGECMSYSQKSQIYIN 112 (143)
Q Consensus 91 TNg-~v~~GG~Yyli~~swi~g~ 112 (143)
||| +++.|+.||++...|..|.
T Consensus 5 ~~G~~l~~g~~YyI~p~~~~~GG 27 (176)
T PF00197_consen 5 TDGNPLRNGGEYYILPAIRGAGG 27 (176)
T ss_dssp TTSCB-BTTSEEEEEESSTGCSE
T ss_pred CCCCCCcCCCCEEEEeCccCCCC
Confidence 565 6889999999999888754
No 42
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=33.89 E-value=78 Score=26.59 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 47 IWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 47 I~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
+.|.=+|. ++......|...++.+.+++..++..+++.+..++++- -++||.|-+.++..+
T Consensus 10 ~IGaGIl~-lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-p~~~~~~~~~~~~~G 70 (381)
T TIGR00837 10 TIGAGMLA-LPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-PGGASFNTIAKDLLG 70 (381)
T ss_pred hHhHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCHHHHHHHHhC
Confidence 44543332 34455566777788888888899999999999998873 346778777777544
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=31.29 E-value=77 Score=26.72 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=35.9
Q ss_pred HhhhccchhhHHHHHHHHHHH-HHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036 59 VVGEAGIGHSLVIIGISYVVC-IITTLSLSAITTNGEVKGGECMSYSQKSQI 109 (143)
Q Consensus 59 iVG~aGl~~~l~ii~ls~~it-~lT~lSlsAIaTNg~v~~GG~Yyli~~swi 109 (143)
..+++|.. +.+..+++..+. +..+++...+++- ..+.||.|...++.+.
T Consensus 24 ~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~GG~y~~~~~~~g 73 (426)
T PF13520_consen 24 AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAGGIYVWVSRAFG 73 (426)
T ss_dssp HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSTTHHHHHHHHH-
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcCeeeehhhhccc
Confidence 56777776 444444555555 8999999999665 7889999999998764
No 44
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=29.07 E-value=22 Score=28.10 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.7
Q ss_pred hcC-cccCCccceechhhhhh
Q psy9036 91 TNG-EVKGGECMSYSQKSQIY 110 (143)
Q Consensus 91 TNg-~v~~GG~Yyli~~swi~ 110 (143)
||| +++.|+.||++...|.-
T Consensus 4 t~G~~l~~G~~YyI~p~~~g~ 24 (172)
T smart00452 4 TDGNPLRNGGTYYILPAIRGH 24 (172)
T ss_pred CCCCCCcCCCcEEEEEccccC
Confidence 454 78999999999999873
No 45
>KOG1303|consensus
Probab=27.93 E-value=2.3e+02 Score=25.76 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=46.0
Q ss_pred cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCC
Q psy9036 30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGG 98 (143)
Q Consensus 30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~G 98 (143)
++.-+|+..+|- ..|-..-.-.|=++|.+.+.|++.+++++++..++++.|+.=|+-.-...+-..|
T Consensus 35 ~~~~s~~~a~~~--~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 35 SRGGSWWQAAFH--IINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred CCCCcceehhhh--eehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 344556665542 1122222356789999999999999999999999999998666665555444443
No 46
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=27.88 E-value=72 Score=28.63 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCChhhhhCCCCCCCCcceeeeEEeeehhhhH-HHHHHHHHHHHH----------HHhhhccchhhHHHHHHHHHHHHHH
Q psy9036 14 GTSIADATGGAGSNTHGVKLGWIVGVLIPCLL-NIWGVMLFLRMA----------WVVGEAGIGHSLVIIGISYVVCIIT 82 (143)
Q Consensus 14 Rpsl~~l~~~~~~~~~~~k~Gtf~GVfiP~~l-nI~GVilFLRlg----------wiVG~aGl~~~l~ii~ls~~it~lT 82 (143)
.|.++||-+.|+++..+ ..+.|..+|.+. .+|+.+.|.+-| |++=+.++..-...+..++-.+.+|
T Consensus 222 ~~~~~~L~~~p~~~~~~---~k~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~W~l~ng~laalg~~lA~~hplsil~ 298 (380)
T TIGR00261 222 IINLEELEKVKKKHFSF---SKVLSYLIAISIILLFVMISFYLNGFEFLYKNLKLWILSNGILSAIGSILARGHPLTILT 298 (380)
T ss_pred CCChHHHhcCCCCCccH---HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhHHHHHHHHHHcCCHHHHHH
Confidence 34567776555322111 135666677654 344435566655 9999999888888899999999999
Q ss_pred HHHHHHhHh
Q psy9036 83 TLSLSAITT 91 (143)
Q Consensus 83 ~lSlsAIaT 91 (143)
++-.+-+.+
T Consensus 299 a~~~Aplts 307 (380)
T TIGR00261 299 AFLGAPITS 307 (380)
T ss_pred HHHHhhHhh
Confidence 988877766
No 47
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=22.34 E-value=36 Score=26.83 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.2
Q ss_pred hcC-cccCCccceechhhhh
Q psy9036 91 TNG-EVKGGECMSYSQKSQI 109 (143)
Q Consensus 91 TNg-~v~~GG~Yyli~~swi 109 (143)
||| +++.|+.||++.-.|.
T Consensus 5 ~~G~~l~~g~~YyI~p~~~g 24 (172)
T cd00178 5 TDGNPLRNGGRYYILPAIRG 24 (172)
T ss_pred CCCCCCcCCCeEEEEEceeC
Confidence 454 7899999999999987
No 48
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=21.70 E-value=31 Score=20.04 Aligned_cols=14 Identities=0% Similarity=0.017 Sum_probs=11.3
Q ss_pred CCCCCCChhhhhCC
Q psy9036 10 RAPDGTSIADATGG 23 (143)
Q Consensus 10 ~~~~Rpsl~~l~~~ 23 (143)
+.+.||+.+||-+.
T Consensus 6 kl~~RP~~eeLv~r 19 (26)
T smart00707 6 KLSQRPTREELEER 19 (26)
T ss_pred HHHcCCCHHHHHHc
Confidence 55689999999764
No 49
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=20.70 E-value=2.5e+02 Score=20.08 Aligned_cols=46 Identities=33% Similarity=0.609 Sum_probs=31.6
Q ss_pred eeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHH--------HHHHHHHHHHHHH
Q psy9036 38 GVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGIS--------YVVCIITTLSLSA 88 (143)
Q Consensus 38 GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls--------~~it~lT~lSlsA 88 (143)
..|.||+| |++|-|..+-- -.|...++.++..| ..+..+-+.|+.|
T Consensus 6 Al~~P~lL----VvlFtrVT~n~-~vg~~lt~~Li~ASvykGyt~~~~ii~iD~~Sl~a 59 (74)
T PF09964_consen 6 ALFFPCLL----VVLFTRVTYNH-YVGTILTVALIAASVYKGYTHTWWIIFIDAVSLTA 59 (74)
T ss_pred HHHHHHHH----HHHhhhhhHHH-HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 35789988 78898887631 24567777777777 3456667777765
Done!