RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9036
         (143 letters)



>3isg_A Penicillinase, beta-lactamase OXA-1; hydrolase, lysine
           carboxylation, antibiotic resistance; HET: KCX DRW;
           1.40A {Escherichia coli} PDB: 1m6k_A*
          Length = 251

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 8   IQRAPDGTSIADATGGAGSNTHGVKLGWIVG 38
           +Q   + T +   TG   +    ++ GW  G
Sbjct: 178 LQDLDNSTKLYGKTGAGFTANRTLQNGWFEG 208


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,144,371
Number of extensions: 115888
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 4
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)