RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9036
         (143 letters)



>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
           OXA-1 [TaxId: 562]}
          Length = 251

 Score = 24.0 bits (51), Expect = 7.5
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 11  APDGTSIADATGGAGSNTHGVKLGWIVG 38
             + T +   TG   +    ++ GW  G
Sbjct: 181 LDNSTKLYGKTGAGFTANRTLQNGWFEG 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,982
Number of extensions: 20607
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 4
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)