BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9039
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 144 RYRKQIGADNVLVFTDIKKKHSSH----AITADVDITETAKAASFFLSDGLIITGNATGD 199
++ ++G TD+K +H+ A+ ++ D E+ +A F+L G A D
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG------AALD 114
Query: 200 PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT 233
P V +L+ ++ + +++ + SD EH +T
Sbjct: 115 PMPVPELLEIEEYSETAVVLHWSLASDADEHLIT 148
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 144 RYRKQIGADNVLVFTDIKKKHSSH----AITADVDITETAKAASFFLSDGLIITGNATGD 199
++ ++G TD+K +H+ A+ ++ D E+ +A F+L G A D
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG------AALD 114
Query: 200 PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT 233
P V +L+ ++ + +++ + SD EH +T
Sbjct: 115 PMPVPELLEIEEYSETAVVLHWSLASDADEHLIT 148
>pdb|1BUI|C Chain C, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 128
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 182 ASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
AS+F G + N TG + ++L+S + V+ PI G+ +T + +E+Y+
Sbjct: 7 ASYFEPTGPYLMVNVTGVDSKGNELLS-PHYVEFPIKPGTTLTKEKIEYYV 56
>pdb|1SSN|A Chain A, Staphylokinase, Sakstar Variant, Nmr, 20 Structures
Length = 136
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 182 ASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
AS+F G + N TG + ++L+S + V+ PI G+ +T + +E+Y+
Sbjct: 15 ASYFEPTGPYLMVNVTGVDSKGNELLS-PHYVEFPIKPGTTLTKEKIEYYV 64
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 17 YVLEAESGPEITANMTRLCAEIRKVLPP 44
+V E ESG + A+M R AE+RKV P
Sbjct: 363 WVREQESGDGMPASMFRAMAEVRKVQRP 390
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 64 YVLEAESGPEITANMTRLCAEIRKVLPP 91
+V E ESG + A+M R AE+RKV P
Sbjct: 363 WVREQESGDGMPASMFRAMAEVRKVQRP 390
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGP 72
D L ++G +T ++ R+CAE ++ ++P G + HDV V+
Sbjct: 49 QDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS 108
Query: 73 EITANMTRLCAE-IRKVLPPSVPVGVQI 99
E R E I V ++ VGV +
Sbjct: 109 EPQKAQLRAAGEKIALVFSANMSVGVNV 136
>pdb|1C76|A Chain A, Staphylokinase (Sak) Monomer
pdb|1C77|A Chain A, Staphylokinase (Sak) Dimer
pdb|1C77|B Chain B, Staphylokinase (Sak) Dimer
pdb|1C78|A Chain A, Staphylokinase (Sak) Dimer
pdb|1C78|B Chain B, Staphylokinase (Sak) Dimer
pdb|1C79|A Chain A, Staphylokinase (Sak) Dimer
pdb|1C79|B Chain B, Staphylokinase (Sak) Dimer
Length = 136
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 182 ASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
AS+F G + N TG ++L+S + V+ PI G+ +T + +E+Y+
Sbjct: 15 ASYFEPTGPYLMVNVTGVDGKGNELLS-PHYVEFPIKPGTTLTKEKIEYYV 64
>pdb|3F4M|A Chain A, Crystal Structure Of Tipe2
Length = 161
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 2 PQKHGVI--VENMHDVPYVLEAESGPEITANMTRLCAEIRKVL 42
P+ HG I V + P +L A GP+ T ++ ++C +RK+L
Sbjct: 114 PKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLL 156
>pdb|2SAK|A Chain A, Staphylokinase (sakstar Variant)
Length = 121
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 183 SFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232
S+F G + N TG + ++L+S + V+ PI G+ +T + +E+Y+
Sbjct: 1 SYFEPTGPYLMVNVTGVDSKGNELLS-PHYVEFPIKPGTTLTKEKIEYYV 49
>pdb|1WV2|A Chain A, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
pdb|1WV2|B Chain B, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
Length = 265
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPI--LIGSGV 223
++ ET KAA + DG + + DP QL + +P+ LIGSG+
Sbjct: 120 NVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGL 171
>pdb|1Y9U|A Chain A, Bordetella Ferric Binding Protein
pdb|2OWS|A Chain A, Crystal Structure Of Bordetella Pertussis Holo Ferric
Binding Protein Bound With Two Synergistic Oxalate
Anions
pdb|2OWT|A Chain A, Crystal Structure Of Bordetella Pertussis Holo Ferric
Binding Protein With Bound Synergistic Carbonate Anion
Length = 323
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 180 KAASFFLSDGLIITGNATGD--PADVSQLMSVKNAVDLPILIGSGVT 224
K + F+ DGL+ A GD PADV + + N +D L+ GVT
Sbjct: 33 KVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLID---LVNGGVT 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,818,604
Number of Sequences: 62578
Number of extensions: 250417
Number of successful extensions: 603
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 15
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)