Query psy9039
Match_columns 251
No_of_seqs 184 out of 1161
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:23:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0434 SgcQ Predicted TIM-bar 100.0 3.4E-61 7.3E-66 412.6 20.1 232 7-250 9-242 (263)
2 PF03437 BtpA: BtpA family; I 100.0 1.1E-60 2.4E-65 420.8 21.5 232 7-250 4-237 (254)
3 TIGR00259 thylakoid_BtpA membr 100.0 3.4E-58 7.4E-63 405.3 20.2 232 7-250 3-237 (257)
4 COG0159 TrpA Tryptophan syntha 100.0 1.5E-40 3.3E-45 292.8 11.2 199 12-245 17-238 (265)
5 PLN02591 tryptophan synthase 100.0 4.7E-39 1E-43 283.9 10.5 197 13-245 3-223 (250)
6 PF00290 Trp_syntA: Tryptophan 100.0 4.7E-39 1E-43 284.8 4.2 198 12-245 10-231 (259)
7 CHL00200 trpA tryptophan synth 100.0 3.5E-38 7.6E-43 280.5 9.8 196 13-244 16-235 (263)
8 PRK13111 trpA tryptophan synth 100.0 9E-37 2E-41 270.8 10.4 197 13-245 13-233 (258)
9 KOG4175|consensus 100.0 1.8E-35 3.9E-40 248.4 7.0 197 13-245 19-240 (268)
10 TIGR00262 trpA tryptophan synt 100.0 3.3E-34 7.1E-39 254.4 11.2 197 13-245 11-232 (256)
11 cd04724 Tryptophan_synthase_al 100.0 3.5E-30 7.5E-35 227.0 10.9 196 14-245 2-220 (242)
12 PRK13125 trpA tryptophan synth 99.9 2.5E-24 5.5E-29 189.9 7.2 192 14-245 6-219 (244)
13 TIGR03151 enACPred_II putative 99.2 7.5E-11 1.6E-15 107.6 11.0 140 75-245 47-195 (307)
14 PRK04169 geranylgeranylglycery 99.2 1.3E-10 2.8E-15 101.9 11.0 65 184-248 152-221 (232)
15 cd00429 RPE Ribulose-5-phospha 99.2 2.2E-10 4.8E-15 97.7 11.2 172 43-246 19-200 (211)
16 cd00331 IGPS Indole-3-glycerol 99.2 4.6E-10 1E-14 97.0 13.2 166 43-248 38-209 (217)
17 PF03060 NMO: Nitronate monoox 99.2 3E-11 6.5E-16 111.1 6.0 151 76-245 48-224 (330)
18 TIGR01163 rpe ribulose-phospha 99.1 6.7E-10 1.4E-14 94.9 11.7 169 43-246 18-199 (210)
19 PRK01130 N-acetylmannosamine-6 99.1 1.4E-09 3.1E-14 94.2 13.3 173 21-246 14-208 (221)
20 cd04726 KGPDC_HPS 3-Keto-L-gul 99.1 2.7E-09 6E-14 90.7 13.1 168 43-248 20-194 (202)
21 PRK05581 ribulose-phosphate 3- 99.1 4.8E-10 1E-14 96.6 8.5 175 43-248 23-206 (220)
22 cd04743 NPD_PKS 2-Nitropropane 99.0 2E-09 4.4E-14 98.4 10.4 139 75-245 39-207 (320)
23 TIGR00007 phosphoribosylformim 99.0 9.1E-09 2E-13 89.5 12.7 182 43-248 35-226 (230)
24 cd04730 NPD_like 2-Nitropropan 99.0 1.4E-08 3.1E-13 88.4 13.5 143 74-247 37-192 (236)
25 TIGR02814 pfaD_fam PfaD family 98.9 2E-08 4.3E-13 95.4 14.7 158 73-245 53-258 (444)
26 cd04742 NPD_FabD 2-Nitropropan 98.9 2.3E-08 4.9E-13 94.5 15.0 153 73-245 48-253 (418)
27 cd04731 HisF The cyclase subun 98.9 2.7E-08 5.8E-13 87.4 13.0 179 43-247 34-230 (243)
28 cd04729 NanE N-acetylmannosami 98.9 3.3E-08 7.1E-13 85.7 13.2 146 81-248 51-214 (219)
29 COG0352 ThiE Thiamine monophos 98.9 2.7E-08 5.9E-13 86.1 11.6 157 43-246 28-192 (211)
30 TIGR01769 GGGP geranylgeranylg 98.8 3.3E-08 7.2E-13 85.2 11.5 69 172-240 130-205 (205)
31 cd04732 HisA HisA. Phosphorib 98.8 3.2E-08 7E-13 86.1 11.6 181 43-247 36-226 (234)
32 cd00564 TMP_TenI Thiamine mono 98.8 2.9E-08 6.3E-13 83.1 10.9 158 43-247 19-185 (196)
33 PRK09140 2-dehydro-3-deoxy-6-p 98.8 1E-07 2.2E-12 82.3 14.0 153 42-245 28-184 (206)
34 TIGR01768 GGGP-family geranylg 98.8 4.1E-08 8.8E-13 85.6 11.5 63 184-246 147-214 (223)
35 PRK13585 1-(5-phosphoribosyl)- 98.8 4.6E-08 9.9E-13 85.7 11.8 182 43-248 39-230 (241)
36 PRK07455 keto-hydroxyglutarate 98.8 2E-07 4.3E-12 79.3 15.1 152 43-245 31-185 (187)
37 TIGR01037 pyrD_sub1_fam dihydr 98.8 8.4E-08 1.8E-12 86.9 13.2 76 174-249 170-272 (300)
38 TIGR03128 RuMP_HxlA 3-hexulose 98.8 1.5E-07 3.2E-12 80.5 13.7 169 41-246 17-192 (206)
39 PRK06552 keto-hydroxyglutarate 98.8 1.3E-07 2.8E-12 82.1 13.5 156 40-246 29-189 (213)
40 COG2070 Dioxygenases related t 98.8 2.2E-08 4.7E-13 92.5 8.5 72 174-245 135-218 (336)
41 cd00452 KDPG_aldolase KDPG and 98.8 2.1E-07 4.5E-12 79.1 13.6 152 42-245 22-176 (190)
42 cd04722 TIM_phosphate_binding 98.8 1.4E-07 2.9E-12 78.1 12.0 167 43-241 19-200 (200)
43 TIGR03572 WbuZ glycosyl amidat 98.8 1.7E-07 3.8E-12 81.7 13.2 178 43-244 37-231 (232)
44 cd02812 PcrB_like PcrB_like pr 98.8 2.3E-07 5E-12 80.7 13.8 71 174-246 136-210 (219)
45 PRK00278 trpC indole-3-glycero 98.7 9.9E-08 2.1E-12 85.2 11.6 165 43-247 77-247 (260)
46 cd00405 PRAI Phosphoribosylant 98.7 4.8E-08 1E-12 83.7 9.2 166 43-248 13-190 (203)
47 PRK00748 1-(5-phosphoribosyl)- 98.7 1.7E-07 3.6E-12 81.6 12.7 180 43-247 37-227 (233)
48 PRK02083 imidazole glycerol ph 98.7 1.9E-07 4.1E-12 82.7 12.8 181 43-246 37-233 (253)
49 PRK00043 thiE thiamine-phospha 98.7 4.1E-07 8.8E-12 77.7 14.1 68 179-246 117-194 (212)
50 TIGR00735 hisF imidazoleglycer 98.7 3.2E-07 7E-12 81.4 13.2 180 43-246 37-235 (254)
51 cd02810 DHOD_DHPD_FMN Dihydroo 98.7 4.3E-07 9.3E-12 81.7 12.8 146 93-248 99-280 (289)
52 cd04740 DHOD_1B_like Dihydroor 98.6 9.3E-07 2E-11 79.9 14.8 153 82-246 81-266 (296)
53 PLN02334 ribulose-phosphate 3- 98.6 2.6E-07 5.7E-12 80.7 9.6 174 41-246 25-208 (229)
54 PRK06512 thiamine-phosphate py 98.6 5.8E-07 1.3E-11 78.4 11.3 157 43-245 33-197 (221)
55 cd04727 pdxS PdxS is a subunit 98.6 2.7E-07 5.8E-12 82.5 9.3 170 43-245 22-230 (283)
56 PRK08883 ribulose-phosphate 3- 98.6 1.1E-06 2.4E-11 76.6 12.7 173 39-246 15-201 (220)
57 TIGR00343 pyridoxal 5'-phospha 98.5 4E-07 8.8E-12 81.5 9.5 172 43-247 24-235 (287)
58 TIGR00693 thiE thiamine-phosph 98.5 1.1E-06 2.4E-11 74.4 11.5 72 174-246 105-186 (196)
59 COG1646 Predicted phosphate-bi 98.5 1.3E-06 2.7E-11 76.1 11.8 189 24-247 23-227 (240)
60 PRK01033 imidazole glycerol ph 98.5 2.5E-06 5.4E-11 76.0 14.0 180 43-247 37-233 (258)
61 PRK05718 keto-hydroxyglutarate 98.5 3.4E-06 7.3E-11 73.2 14.1 156 39-245 30-188 (212)
62 PRK13587 1-(5-phosphoribosyl)- 98.5 1.2E-06 2.5E-11 77.1 11.0 177 43-245 38-226 (234)
63 cd04739 DHOD_like Dihydroorota 98.5 2.7E-06 5.8E-11 78.3 13.8 74 174-247 176-273 (325)
64 PRK07028 bifunctional hexulose 98.5 3E-06 6.5E-11 80.7 14.5 168 43-248 23-198 (430)
65 PRK04180 pyridoxal biosynthesi 98.5 3.1E-07 6.8E-12 82.4 6.8 172 43-247 31-241 (293)
66 COG0269 SgbH 3-hexulose-6-phos 98.5 7.4E-06 1.6E-10 70.7 14.6 172 38-246 18-198 (217)
67 TIGR00736 nifR3_rel_arch TIM-b 98.5 3.5E-06 7.7E-11 74.0 13.0 164 77-250 56-230 (231)
68 PF02581 TMP-TENI: Thiamine mo 98.4 3.9E-06 8.4E-11 70.6 12.4 154 43-243 19-180 (180)
69 TIGR01182 eda Entner-Doudoroff 98.4 6.1E-06 1.3E-10 71.2 13.2 155 40-245 24-181 (204)
70 cd04723 HisA_HisF Phosphoribos 98.4 6.2E-06 1.4E-10 72.4 13.5 177 43-247 42-225 (233)
71 cd02809 alpha_hydroxyacid_oxid 98.4 2.6E-06 5.6E-11 77.4 11.3 141 83-245 108-261 (299)
72 PRK07259 dihydroorotate dehydr 98.4 1E-05 2.2E-10 73.4 14.6 74 174-247 170-270 (301)
73 PRK07565 dihydroorotate dehydr 98.4 7.5E-06 1.6E-10 75.5 13.4 154 80-247 91-275 (334)
74 PRK02615 thiamine-phosphate py 98.3 3.9E-06 8.4E-11 77.9 10.7 156 43-245 164-327 (347)
75 PRK07695 transcriptional regul 98.3 1.1E-05 2.3E-10 69.0 12.4 152 45-245 23-182 (201)
76 PRK04302 triosephosphate isome 98.3 3.7E-06 8E-11 73.2 9.6 45 204-248 162-210 (223)
77 PRK06015 keto-hydroxyglutarate 98.3 1.4E-05 3E-10 68.8 12.9 155 40-245 20-177 (201)
78 cd04728 ThiG Thiazole synthase 98.3 2.4E-06 5.2E-11 75.2 8.2 115 114-246 89-210 (248)
79 cd02801 DUS_like_FMN Dihydrour 98.3 5.8E-06 1.3E-10 71.6 10.7 72 178-249 143-222 (231)
80 cd04738 DHOD_2_like Dihydrooro 98.3 5.1E-06 1.1E-10 76.4 10.6 75 174-248 217-317 (327)
81 PLN02826 dihydroorotate dehydr 98.3 9.6E-06 2.1E-10 76.8 12.4 75 173-247 276-377 (409)
82 PRK14024 phosphoribosyl isomer 98.3 1E-05 2.2E-10 71.3 11.7 178 43-247 39-229 (241)
83 PF01884 PcrB: PcrB family; I 98.3 1.8E-06 4E-11 75.5 6.8 65 184-248 151-219 (230)
84 PF00977 His_biosynth: Histidi 98.3 2.7E-06 5.8E-11 74.5 7.8 180 43-249 36-228 (229)
85 PRK08999 hypothetical protein; 98.3 2.8E-05 6.1E-10 70.6 14.3 69 174-243 235-311 (312)
86 PF01081 Aldolase: KDPG and KH 98.2 3E-06 6.5E-11 72.7 6.8 153 43-246 27-182 (196)
87 PRK05286 dihydroorotate dehydr 98.2 3.1E-06 6.7E-11 78.5 7.3 75 174-248 226-326 (344)
88 PRK00208 thiG thiazole synthas 98.2 5.3E-06 1.2E-10 73.1 8.1 115 114-246 89-210 (250)
89 cd02940 DHPD_FMN Dihydropyrimi 98.2 3.6E-05 7.8E-10 69.9 12.8 74 174-247 181-288 (299)
90 PRK07114 keto-hydroxyglutarate 98.1 4.8E-05 1E-09 66.4 12.7 161 37-245 28-193 (222)
91 PRK10415 tRNA-dihydrouridine s 98.1 2E-05 4.3E-10 72.4 10.6 74 174-247 150-231 (321)
92 cd02803 OYE_like_FMN_family Ol 98.1 3E-06 6.5E-11 77.4 5.1 73 177-249 232-320 (327)
93 COG0800 Eda 2-keto-3-deoxy-6-p 98.1 4.5E-05 9.7E-10 65.8 11.8 158 36-246 25-187 (211)
94 PRK13307 bifunctional formalde 98.1 0.00014 2.9E-09 68.6 15.2 167 43-246 192-364 (391)
95 PRK12290 thiE thiamine-phospha 98.1 9.5E-06 2.1E-10 76.9 7.1 157 43-246 224-398 (437)
96 PRK10550 tRNA-dihydrouridine s 98.0 3.8E-05 8.3E-10 70.3 10.7 148 93-247 63-231 (312)
97 PRK11815 tRNA-dihydrouridine s 98.0 2.1E-05 4.5E-10 72.7 9.0 72 175-246 153-239 (333)
98 cd02911 arch_FMN Archeal FMN-b 98.0 0.00012 2.6E-09 64.4 13.0 68 173-242 152-222 (233)
99 PTZ00170 D-ribulose-5-phosphat 98.0 6.4E-05 1.4E-09 65.9 11.1 176 39-246 22-207 (228)
100 TIGR00737 nifR3_yhdG putative 98.0 4.9E-05 1.1E-09 69.6 10.6 74 174-247 148-229 (319)
101 PRK03512 thiamine-phosphate py 98.0 0.00017 3.8E-09 62.4 13.2 72 174-246 111-192 (211)
102 COG3010 NanE Putative N-acetyl 98.0 0.00014 3.1E-09 62.4 12.3 71 174-245 135-214 (229)
103 cd04741 DHOD_1A_like Dihydroor 98.0 0.00013 2.8E-09 66.2 12.8 44 204-247 231-279 (294)
104 PRK08745 ribulose-phosphate 3- 98.0 0.00023 5E-09 62.3 13.4 173 39-246 19-205 (223)
105 cd02933 OYE_like_FMN Old yello 97.9 0.00015 3.3E-09 67.1 12.7 73 177-249 245-323 (338)
106 cd02932 OYE_YqiM_FMN Old yello 97.9 9.4E-05 2E-09 68.2 11.3 158 30-249 148-329 (336)
107 COG0036 Rpe Pentose-5-phosphat 97.9 0.00028 6E-09 61.3 13.3 174 40-248 20-205 (220)
108 PLN02898 HMP-P kinase/thiamin- 97.9 0.0001 2.3E-09 71.5 11.9 156 43-245 314-480 (502)
109 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00032 6.9E-09 61.7 13.5 180 43-249 37-226 (232)
110 CHL00162 thiG thiamin biosynth 97.9 9.4E-05 2E-09 65.4 9.9 116 116-248 105-226 (267)
111 TIGR01036 pyrD_sub2 dihydrooro 97.9 3.8E-05 8.3E-10 71.0 8.0 74 174-247 225-324 (335)
112 PF04131 NanE: Putative N-acet 97.9 1.3E-05 2.8E-10 68.0 4.4 69 175-244 101-177 (192)
113 PRK13957 indole-3-glycerol-pho 97.9 0.00012 2.6E-09 64.9 10.5 165 43-248 68-238 (247)
114 TIGR00734 hisAF_rel hisA/hisF 97.9 3.7E-05 8.1E-10 67.0 7.2 72 174-246 142-219 (221)
115 PRK08005 epimerase; Validated 97.9 0.00029 6.3E-09 61.1 12.7 173 39-246 16-197 (210)
116 TIGR00735 hisF imidazoleglycer 97.9 3.6E-05 7.8E-10 68.3 6.9 74 174-247 31-110 (254)
117 PRK05437 isopentenyl pyrophosp 97.9 0.00015 3.3E-09 67.5 11.1 151 80-246 109-296 (352)
118 PF00218 IGPS: Indole-3-glycer 97.8 4.6E-05 1E-09 67.9 7.1 165 43-248 75-246 (254)
119 cd04733 OYE_like_2_FMN Old yel 97.8 2.7E-05 5.9E-10 71.9 5.6 46 204-249 282-331 (338)
120 cd00945 Aldolase_Class_I Class 97.8 0.00018 3.9E-09 60.0 10.0 66 175-240 131-201 (201)
121 PRK08318 dihydropyrimidine deh 97.8 0.00034 7.4E-09 66.4 12.6 154 83-247 91-289 (420)
122 cd04731 HisF The cyclase subun 97.8 7.3E-05 1.6E-09 65.6 7.1 75 174-248 28-108 (243)
123 cd02931 ER_like_FMN Enoate red 97.8 0.00035 7.5E-09 65.7 11.9 171 30-248 144-343 (382)
124 PRK02083 imidazole glycerol ph 97.7 7.7E-05 1.7E-09 66.0 6.9 73 175-247 32-110 (253)
125 PRK00748 1-(5-phosphoribosyl)- 97.7 9.4E-05 2E-09 64.3 7.1 72 175-246 32-109 (233)
126 cd04734 OYE_like_3_FMN Old yel 97.7 0.00048 1E-08 63.9 12.1 46 203-248 274-323 (343)
127 COG0106 HisA Phosphoribosylfor 97.7 0.00076 1.6E-08 59.4 12.5 180 43-247 38-228 (241)
128 PRK09517 multifunctional thiam 97.7 0.0003 6.5E-09 71.6 11.5 60 186-245 128-199 (755)
129 PLN02446 (5-phosphoribosyl)-5- 97.7 0.00052 1.1E-08 61.3 11.3 182 43-249 50-248 (262)
130 PRK08649 inosine 5-monophospha 97.7 0.00042 9.1E-09 64.9 11.2 121 105-245 144-290 (368)
131 TIGR00742 yjbN tRNA dihydrouri 97.7 0.00048 1E-08 63.3 11.4 71 176-246 144-229 (318)
132 PRK13523 NADPH dehydrogenase N 97.7 0.00034 7.4E-09 64.8 10.4 154 30-249 136-314 (337)
133 COG0134 TrpC Indole-3-glycerol 97.7 0.00039 8.5E-09 61.7 10.2 165 43-248 73-244 (254)
134 cd02930 DCR_FMN 2,4-dienoyl-Co 97.7 0.00032 6.9E-09 65.2 9.9 70 179-248 230-314 (353)
135 cd04732 HisA HisA. Phosphorib 97.7 0.00015 3.3E-09 63.0 7.3 71 176-246 32-108 (234)
136 cd02811 IDI-2_FMN Isopentenyl- 97.6 0.00037 8E-09 64.2 9.7 70 176-245 192-289 (326)
137 cd04737 LOX_like_FMN L-Lactate 97.6 0.0008 1.7E-08 62.7 11.8 70 176-245 232-310 (351)
138 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00017 3.7E-09 63.7 6.9 178 43-249 37-231 (241)
139 TIGR01919 hisA-trpF 1-(5-phosp 97.6 0.00021 4.5E-09 63.2 7.1 176 44-245 39-230 (243)
140 PRK01222 N-(5'-phosphoribosyl) 97.6 0.00072 1.6E-08 58.5 10.2 165 43-248 17-192 (210)
141 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00026 5.7E-09 62.0 7.5 52 193-244 52-106 (228)
142 cd00381 IMPDH IMPDH: The catal 97.5 0.00048 1E-08 63.5 9.4 70 176-245 146-231 (325)
143 PLN02274 inosine-5'-monophosph 97.5 0.00022 4.8E-09 69.4 7.3 73 173-245 297-385 (505)
144 PRK08255 salicylyl-CoA 5-hydro 97.5 0.0011 2.5E-08 67.5 12.3 158 30-249 545-726 (765)
145 TIGR03572 WbuZ glycosyl amidat 97.5 0.0004 8.7E-09 60.5 7.8 72 175-246 32-109 (232)
146 COG0167 PyrD Dihydroorotate de 97.5 0.00056 1.2E-08 62.6 8.7 77 172-248 172-278 (310)
147 TIGR00007 phosphoribosylformim 97.5 0.0004 8.6E-09 60.3 7.4 71 176-246 31-107 (230)
148 cd04735 OYE_like_4_FMN Old yel 97.4 5.5E-05 1.2E-09 70.4 1.8 72 177-248 239-321 (353)
149 cd02922 FCB2_FMN Flavocytochro 97.4 0.0015 3.2E-08 60.7 11.2 70 175-245 223-305 (344)
150 COG0107 HisF Imidazoleglycerol 97.4 0.0016 3.6E-08 56.9 10.3 201 5-246 14-235 (256)
151 PF01207 Dus: Dihydrouridine s 97.4 0.00045 9.7E-09 63.2 6.9 74 173-246 138-219 (309)
152 PF00834 Ribul_P_3_epim: Ribul 97.4 0.00032 6.9E-09 60.4 5.5 167 43-245 19-199 (201)
153 PLN02617 imidazole glycerol ph 97.4 0.0026 5.7E-08 62.4 12.5 191 43-246 274-518 (538)
154 PLN02460 indole-3-glycerol-pho 97.3 0.0021 4.5E-08 59.4 10.8 165 43-248 146-325 (338)
155 TIGR02151 IPP_isom_2 isopenten 97.3 0.00032 7E-09 64.8 5.6 69 176-245 193-288 (333)
156 TIGR02129 hisA_euk phosphoribo 97.3 0.0028 6.1E-08 56.4 11.3 175 43-245 45-237 (253)
157 PRK13585 1-(5-phosphoribosyl)- 97.3 0.00057 1.2E-08 59.8 6.8 71 176-246 35-111 (241)
158 PRK04128 1-(5-phosphoribosyl)- 97.3 0.0025 5.4E-08 55.8 10.8 148 78-246 61-217 (228)
159 PRK01033 imidazole glycerol ph 97.3 0.00074 1.6E-08 60.1 7.5 71 176-246 33-109 (258)
160 PRK13958 N-(5'-phosphoribosyl) 97.3 0.00047 1E-08 59.6 5.9 48 197-247 138-189 (207)
161 PRK13802 bifunctional indole-3 97.3 0.0019 4E-08 65.1 10.9 165 43-248 77-248 (695)
162 PRK09427 bifunctional indole-3 97.3 0.0017 3.7E-08 62.5 10.2 164 43-248 77-246 (454)
163 PRK13587 1-(5-phosphoribosyl)- 97.3 0.00078 1.7E-08 59.3 7.3 69 178-246 36-111 (234)
164 PRK10605 N-ethylmaleimide redu 97.3 0.00026 5.6E-09 66.2 4.3 70 179-248 255-329 (362)
165 COG0042 tRNA-dihydrouridine sy 97.3 0.0024 5.3E-08 58.8 10.6 71 175-245 154-233 (323)
166 COG0135 TrpF Phosphoribosylant 97.3 0.0011 2.5E-08 57.3 7.6 164 43-246 16-189 (208)
167 PRK09722 allulose-6-phosphate 97.3 0.0088 1.9E-07 52.6 13.3 165 43-242 22-199 (229)
168 PF05690 ThiG: Thiazole biosyn 97.2 0.00047 1E-08 60.4 5.2 121 108-245 82-209 (247)
169 PRK14024 phosphoribosyl isomer 97.2 0.0011 2.3E-08 58.5 7.5 61 185-246 44-110 (241)
170 PF04481 DUF561: Protein of un 97.2 0.0014 3.1E-08 56.7 7.1 151 78-245 49-219 (242)
171 PRK11840 bifunctional sulfur c 97.1 0.003 6.4E-08 58.0 9.4 116 114-247 163-285 (326)
172 cd04736 MDH_FMN Mandelate dehy 97.1 0.0011 2.4E-08 61.9 6.7 69 176-244 247-322 (361)
173 cd00331 IGPS Indole-3-glycerol 97.1 0.0016 3.5E-08 56.1 7.4 93 153-245 10-106 (217)
174 PRK05458 guanosine 5'-monophos 97.1 0.0013 2.9E-08 60.6 7.2 69 176-244 151-234 (326)
175 PRK06843 inosine 5-monophospha 97.1 0.0013 2.9E-08 62.2 7.3 71 174-245 203-290 (404)
176 PLN02495 oxidoreductase, actin 97.1 0.0073 1.6E-07 57.0 11.9 158 80-248 102-307 (385)
177 cd03332 LMO_FMN L-Lactate 2-mo 97.1 0.00096 2.1E-08 62.8 6.0 69 176-244 264-341 (383)
178 cd04723 HisA_HisF Phosphoribos 97.1 0.0025 5.4E-08 55.9 8.1 61 185-246 47-113 (233)
179 PRK14057 epimerase; Provisiona 97.0 0.011 2.3E-07 52.8 11.8 179 39-246 35-227 (254)
180 cd02929 TMADH_HD_FMN Trimethyl 97.0 0.0093 2E-07 55.9 11.9 46 203-248 278-327 (370)
181 PF03437 BtpA: BtpA family; I 97.0 0.0045 9.7E-08 55.2 9.2 47 3-54 42-88 (254)
182 PLN02535 glycolate oxidase 97.0 0.0018 3.8E-08 60.6 6.7 70 176-245 234-312 (364)
183 cd00958 DhnA Class I fructose- 97.0 0.0021 4.5E-08 56.1 6.7 65 179-248 149-222 (235)
184 PRK08091 ribulose-phosphate 3- 97.0 0.015 3.1E-07 51.2 11.9 173 39-246 28-213 (228)
185 PRK02506 dihydroorotate dehydr 96.9 0.014 3E-07 53.4 11.9 44 204-247 229-277 (310)
186 cd04747 OYE_like_5_FMN Old yel 96.9 0.011 2.4E-07 55.3 10.9 64 185-248 247-336 (361)
187 TIGR02129 hisA_euk phosphoribo 96.8 0.0013 2.8E-08 58.6 4.3 48 198-246 61-110 (253)
188 COG0214 SNZ1 Pyridoxine biosyn 96.8 0.0066 1.4E-07 53.3 8.4 48 201-248 193-245 (296)
189 PRK14114 1-(5-phosphoribosyl)- 96.8 0.0044 9.6E-08 54.8 7.4 62 185-247 42-109 (241)
190 PF03932 CutC: CutC family; I 96.8 0.01 2.3E-07 51.1 9.4 54 180-233 134-189 (201)
191 TIGR01949 AroFGH_arch predicte 96.8 0.0031 6.8E-08 56.0 6.5 63 180-247 163-234 (258)
192 COG1902 NemA NADH:flavin oxido 96.8 0.02 4.3E-07 53.7 12.0 72 178-249 242-327 (363)
193 TIGR01304 IMP_DH_rel_2 IMP deh 96.8 0.0022 4.7E-08 60.2 5.3 32 214-245 255-289 (369)
194 PRK11197 lldD L-lactate dehydr 96.7 0.0024 5.3E-08 60.1 5.2 71 175-245 255-334 (381)
195 PRK08072 nicotinate-nucleotide 96.7 0.0059 1.3E-07 55.1 7.4 63 174-243 197-263 (277)
196 PLN02363 phosphoribosylanthran 96.7 0.011 2.3E-07 52.9 9.0 63 186-248 169-237 (256)
197 PRK07807 inosine 5-monophospha 96.7 0.0038 8.2E-08 60.5 6.6 73 172-244 275-363 (479)
198 PF00977 His_biosynth: Histidi 96.7 0.00077 1.7E-08 59.0 1.5 64 185-248 41-110 (229)
199 PLN02446 (5-phosphoribosyl)-5- 96.6 0.0062 1.3E-07 54.5 6.9 50 198-248 68-119 (262)
200 PRK11572 copper homeostasis pr 96.6 0.026 5.6E-07 50.2 10.7 54 180-233 135-189 (248)
201 PRK06806 fructose-bisphosphate 96.6 0.0082 1.8E-07 54.3 7.4 155 83-245 67-235 (281)
202 PLN02979 glycolate oxidase 96.5 0.0047 1E-07 57.7 5.7 69 176-244 234-311 (366)
203 COG2022 ThiG Uncharacterized e 96.5 0.021 4.6E-07 50.1 9.3 136 94-246 67-217 (262)
204 COG0106 HisA Phosphoribosylfor 96.5 0.0062 1.3E-07 53.7 6.0 58 189-246 50-110 (241)
205 TIGR01302 IMP_dehydrog inosine 96.5 0.0066 1.4E-07 58.4 6.7 72 173-244 273-360 (450)
206 cd01572 QPRTase Quinolinate ph 96.5 0.011 2.3E-07 53.2 7.5 64 174-244 191-258 (268)
207 TIGR02708 L_lactate_ox L-lacta 96.4 0.011 2.4E-07 55.4 7.8 70 176-245 239-317 (367)
208 KOG3111|consensus 96.4 0.089 1.9E-06 45.0 12.4 170 40-247 21-204 (224)
209 PF00724 Oxidored_FMN: NADH:fl 96.4 0.014 3.1E-07 54.0 8.1 46 203-248 280-329 (341)
210 TIGR01919 hisA-trpF 1-(5-phosp 96.4 0.0058 1.3E-07 54.1 5.2 54 193-247 54-110 (243)
211 PRK05567 inosine 5'-monophosph 96.3 0.011 2.3E-07 57.5 7.3 72 174-245 278-365 (486)
212 PRK07315 fructose-bisphosphate 96.3 0.077 1.7E-06 48.3 12.4 67 179-245 159-237 (293)
213 TIGR00078 nadC nicotinate-nucl 96.3 0.012 2.7E-07 52.7 7.2 64 174-245 187-254 (265)
214 cd02808 GltS_FMN Glutamate syn 96.3 0.0074 1.6E-07 57.0 6.0 71 174-244 226-318 (392)
215 COG0107 HisF Imidazoleglycerol 96.3 0.01 2.2E-07 52.0 6.2 62 185-246 42-109 (256)
216 PTZ00314 inosine-5'-monophosph 96.3 0.01 2.2E-07 57.8 6.9 72 174-245 291-378 (495)
217 PRK09427 bifunctional indole-3 96.3 0.019 4.1E-07 55.3 8.6 57 186-245 374-434 (454)
218 PRK13813 orotidine 5'-phosphat 96.3 0.025 5.5E-07 48.6 8.6 165 49-247 28-199 (215)
219 cd01568 QPRTase_NadC Quinolina 96.2 0.014 3E-07 52.5 6.9 63 174-243 190-258 (269)
220 PLN02617 imidazole glycerol ph 96.2 0.012 2.5E-07 57.9 6.8 62 185-246 279-360 (538)
221 PF00697 PRAI: N-(5'phosphorib 96.2 0.0035 7.6E-08 53.6 2.8 61 188-248 118-185 (197)
222 PLN02493 probable peroxisomal 96.2 0.0092 2E-07 55.9 5.8 69 176-244 235-312 (367)
223 PRK13586 1-(5-phosphoribosyl)- 96.2 0.021 4.5E-07 50.2 7.7 62 185-247 42-109 (232)
224 COG4981 Enoyl reductase domain 96.2 0.013 2.9E-07 56.9 6.8 159 71-245 68-258 (717)
225 PRK07226 fructose-bisphosphate 96.1 0.0097 2.1E-07 53.2 5.4 63 180-247 167-238 (267)
226 PRK06801 hypothetical protein; 96.1 0.18 3.8E-06 45.8 13.2 154 78-244 62-237 (286)
227 TIGR01859 fruc_bis_ald_ fructo 96.0 0.022 4.7E-07 51.6 7.3 67 179-245 158-235 (282)
228 TIGR01306 GMP_reduct_2 guanosi 96.0 0.02 4.4E-07 52.7 7.1 69 176-244 148-231 (321)
229 PRK05742 nicotinate-nucleotide 96.0 0.024 5.2E-07 51.2 7.3 63 174-243 198-264 (277)
230 PLN02411 12-oxophytodienoate r 95.9 0.0063 1.4E-07 57.5 3.1 45 205-249 304-351 (391)
231 PRK13306 ulaD 3-keto-L-gulonat 95.8 0.17 3.7E-06 43.9 11.4 165 43-245 23-196 (216)
232 TIGR00640 acid_CoA_mut_C methy 95.8 0.036 7.8E-07 44.5 6.7 69 170-238 37-110 (132)
233 TIGR00259 thylakoid_BtpA membr 95.7 0.0071 1.5E-07 54.0 2.7 47 3-54 41-87 (257)
234 KOG1606|consensus 95.7 0.016 3.5E-07 50.2 4.6 48 201-248 194-246 (296)
235 COG1411 Uncharacterized protei 95.7 0.015 3.3E-07 49.9 4.4 70 175-246 139-216 (229)
236 PRK07107 inosine 5-monophospha 95.6 0.066 1.4E-06 52.3 9.0 31 214-244 352-385 (502)
237 PRK13803 bifunctional phosphor 95.5 0.025 5.5E-07 56.4 6.1 49 197-247 144-198 (610)
238 KOG2335|consensus 95.5 0.12 2.7E-06 47.9 9.9 73 174-246 156-239 (358)
239 PRK07428 nicotinate-nucleotide 95.5 0.046 9.9E-07 49.7 7.0 65 177-244 207-275 (288)
240 TIGR01304 IMP_DH_rel_2 IMP deh 95.4 0.077 1.7E-06 49.9 8.5 67 174-241 143-217 (369)
241 COG3142 CutC Uncharacterized p 95.3 0.23 4.9E-06 43.6 10.2 53 180-232 135-189 (241)
242 TIGR00734 hisAF_rel hisA/hisF 95.2 0.07 1.5E-06 46.5 7.0 59 185-246 48-114 (221)
243 PF01180 DHO_dh: Dihydroorotat 95.1 0.011 2.5E-07 53.3 2.0 45 203-247 231-280 (295)
244 PRK11613 folP dihydropteroate 95.1 0.21 4.6E-06 45.2 10.0 88 24-121 26-116 (282)
245 PRK08649 inosine 5-monophospha 95.1 0.11 2.3E-06 48.9 8.3 66 174-240 142-215 (368)
246 cd01573 modD_like ModD; Quinol 95.0 0.058 1.3E-06 48.6 6.2 65 174-242 192-260 (272)
247 TIGR01303 IMP_DH_rel_1 IMP deh 94.9 0.054 1.2E-06 52.5 6.1 68 175-243 276-360 (475)
248 COG0113 HemB Delta-aminolevuli 94.9 0.7 1.5E-05 42.2 12.6 159 35-219 60-275 (330)
249 cd00311 TIM Triosephosphate is 94.8 0.023 4.9E-07 50.4 3.0 32 214-245 199-233 (242)
250 cd06557 KPHMT-like Ketopantoat 94.8 0.065 1.4E-06 47.8 5.8 154 45-223 28-203 (254)
251 PF00478 IMPDH: IMP dehydrogen 94.8 0.015 3.3E-07 54.1 1.8 69 176-244 160-244 (352)
252 PRK14565 triosephosphate isome 94.7 0.031 6.8E-07 49.3 3.6 40 206-245 180-223 (237)
253 TIGR01303 IMP_DH_rel_1 IMP deh 94.7 0.089 1.9E-06 51.0 7.0 63 177-240 228-294 (475)
254 cd00739 DHPS DHPS subgroup of 94.7 0.92 2E-05 40.4 13.0 98 36-151 24-121 (257)
255 PRK05848 nicotinate-nucleotide 94.7 0.092 2E-06 47.3 6.6 64 175-244 191-261 (273)
256 PF01070 FMN_dh: FMN-dependent 94.6 0.039 8.5E-07 51.5 4.1 68 177-244 237-313 (356)
257 PRK05096 guanosine 5'-monophos 94.5 0.045 9.8E-07 50.6 4.3 69 176-244 162-246 (346)
258 PLN02979 glycolate oxidase 94.5 0.68 1.5E-05 43.4 12.1 169 58-242 62-253 (366)
259 cd02071 MM_CoA_mut_B12_BD meth 94.5 0.15 3.3E-06 40.0 6.7 71 170-240 34-109 (122)
260 TIGR01302 IMP_dehydrog inosine 94.5 0.095 2.1E-06 50.4 6.6 60 180-240 230-293 (450)
261 PRK05567 inosine 5'-monophosph 94.5 0.1 2.3E-06 50.6 6.9 61 179-240 233-297 (486)
262 PRK00278 trpC indole-3-glycero 94.5 0.23 5E-06 44.3 8.6 92 153-244 49-144 (260)
263 PRK13957 indole-3-glycerol-pho 94.4 0.24 5.2E-06 44.0 8.5 72 173-244 61-135 (247)
264 PRK00507 deoxyribose-phosphate 94.2 0.21 4.6E-06 43.6 7.6 139 93-242 66-208 (221)
265 PLN02493 probable peroxisomal 94.2 0.94 2E-05 42.6 12.3 169 59-242 64-254 (367)
266 COG0149 TpiA Triosephosphate i 94.1 0.059 1.3E-06 48.0 4.0 32 214-245 202-236 (251)
267 TIGR01305 GMP_reduct_1 guanosi 94.1 0.11 2.3E-06 48.2 5.8 68 176-243 161-244 (343)
268 TIGR02708 L_lactate_ox L-lacta 94.1 1.2 2.6E-05 41.9 12.8 163 59-241 74-257 (367)
269 TIGR01769 GGGP geranylgeranylg 94.1 0.11 2.3E-06 45.0 5.4 65 175-244 13-80 (205)
270 cd03332 LMO_FMN L-Lactate 2-mo 94.1 1.5 3.2E-05 41.5 13.4 40 201-240 240-281 (383)
271 KOG0538|consensus 93.9 0.14 3E-06 46.9 5.9 67 178-244 236-311 (363)
272 cd02072 Glm_B12_BD B12 binding 93.9 0.35 7.7E-06 38.7 7.7 54 170-223 34-90 (128)
273 TIGR00419 tim triosephosphate 93.9 0.12 2.6E-06 44.6 5.3 32 214-245 169-203 (205)
274 PTZ00333 triosephosphate isome 93.7 0.073 1.6E-06 47.5 3.8 32 214-245 207-241 (255)
275 TIGR03217 4OH_2_O_val_ald 4-hy 93.7 0.55 1.2E-05 43.5 9.8 158 43-223 31-195 (333)
276 TIGR00222 panB 3-methyl-2-oxob 93.6 0.32 7E-06 43.6 7.7 157 45-223 31-205 (263)
277 PRK00042 tpiA triosephosphate 93.6 0.075 1.6E-06 47.3 3.7 32 214-245 203-237 (250)
278 PTZ00314 inosine-5'-monophosph 93.6 0.19 4.2E-06 48.9 6.8 61 179-240 246-310 (495)
279 PRK14567 triosephosphate isome 93.6 0.083 1.8E-06 47.1 3.9 32 214-245 202-236 (253)
280 cd02070 corrinoid_protein_B12- 93.6 0.25 5.4E-06 42.2 6.8 83 155-238 100-189 (201)
281 PLN02561 triosephosphate isome 93.5 0.091 2E-06 46.9 4.0 30 214-243 204-236 (253)
282 TIGR01496 DHPS dihydropteroate 93.4 2.1 4.5E-05 38.2 12.7 96 36-151 23-119 (257)
283 cd02067 B12-binding B12 bindin 93.4 0.33 7.1E-06 37.5 6.7 84 155-238 17-107 (119)
284 TIGR01305 GMP_reduct_1 guanosi 93.4 0.22 4.7E-06 46.2 6.3 55 185-240 120-178 (343)
285 COG0434 SgcQ Predicted TIM-bar 93.3 0.065 1.4E-06 47.3 2.7 40 3-44 47-86 (263)
286 cd00377 ICL_PEPM Members of th 93.2 0.63 1.4E-05 41.1 8.9 180 46-243 26-229 (243)
287 PLN02535 glycolate oxidase 93.2 2.2 4.7E-05 40.1 12.8 164 58-241 65-252 (364)
288 PF04309 G3P_antiterm: Glycero 92.9 0.14 3E-06 43.2 4.1 129 78-240 33-169 (175)
289 cd06556 ICL_KPHMT Members of t 92.9 0.25 5.4E-06 43.7 5.8 152 45-219 28-196 (240)
290 PRK13384 delta-aminolevulinic 92.9 2 4.3E-05 39.5 11.6 159 37-219 62-271 (322)
291 KOG4202|consensus 92.9 0.94 2E-05 38.5 8.8 126 93-249 92-225 (227)
292 PRK09283 delta-aminolevulinic 92.8 2.1 4.6E-05 39.4 11.8 31 185-219 240-270 (323)
293 cd00384 ALAD_PBGS Porphobilino 92.8 2.1 4.6E-05 39.2 11.7 160 36-219 51-262 (314)
294 PRK08195 4-hyroxy-2-oxovalerat 92.8 0.91 2E-05 42.1 9.7 158 43-223 32-196 (337)
295 TIGR01306 GMP_reduct_2 guanosi 92.7 0.3 6.5E-06 45.1 6.3 54 186-240 108-165 (321)
296 cd00381 IMPDH IMPDH: The catal 92.2 0.4 8.6E-06 44.2 6.5 61 179-240 99-163 (325)
297 PLN02429 triosephosphate isome 92.2 0.22 4.8E-06 45.8 4.7 32 214-245 263-297 (315)
298 PRK06843 inosine 5-monophospha 92.1 0.47 1E-05 45.2 6.9 61 179-240 158-222 (404)
299 COG1830 FbaB DhnA-type fructos 91.9 1.1 2.3E-05 40.3 8.5 98 139-243 132-240 (265)
300 PF09370 TIM-br_sig_trns: TIM- 91.8 0.2 4.3E-06 44.9 3.8 180 45-245 31-251 (268)
301 TIGR01501 MthylAspMutase methy 91.8 0.87 1.9E-05 36.7 7.2 54 170-223 36-92 (134)
302 PRK06096 molybdenum transport 91.8 0.61 1.3E-05 42.3 7.0 61 176-242 199-266 (284)
303 cd07944 DRE_TIM_HOA_like 4-hyd 91.7 1 2.3E-05 40.2 8.4 158 43-223 27-190 (266)
304 PRK00311 panB 3-methyl-2-oxobu 91.6 0.53 1.1E-05 42.3 6.4 153 45-223 31-206 (264)
305 PRK11320 prpB 2-methylisocitra 91.4 1.4 3.1E-05 40.1 9.1 64 175-243 165-237 (292)
306 TIGR02319 CPEP_Pphonmut carbox 91.4 0.77 1.7E-05 41.9 7.3 178 46-243 33-236 (294)
307 cd04824 eu_ALAD_PBGS_cysteine_ 91.3 3.4 7.5E-05 37.9 11.3 41 175-219 224-268 (320)
308 COG0646 MetH Methionine syntha 91.3 0.67 1.4E-05 42.2 6.6 69 24-103 131-199 (311)
309 PF02310 B12-binding: B12 bind 91.2 0.27 5.9E-06 37.7 3.7 67 175-241 40-112 (121)
310 PF00121 TIM: Triosephosphate 91.2 0.087 1.9E-06 46.7 0.9 31 214-244 202-235 (244)
311 PRK15492 triosephosphate isome 91.1 0.28 6E-06 44.0 4.1 29 214-242 212-243 (260)
312 cd00959 DeoC 2-deoxyribose-5-p 91.0 6.2 0.00013 33.6 12.3 58 175-233 133-194 (203)
313 PRK07535 methyltetrahydrofolat 91.0 1.7 3.7E-05 38.8 9.1 159 38-223 27-203 (261)
314 cd02922 FCB2_FMN Flavocytochro 91.0 1.1 2.4E-05 41.7 8.0 40 201-241 200-242 (344)
315 PRK07107 inosine 5-monophospha 90.9 0.6 1.3E-05 45.6 6.6 57 183-240 251-312 (502)
316 TIGR02317 prpB methylisocitrat 90.5 0.83 1.8E-05 41.5 6.6 178 46-243 30-232 (285)
317 TIGR02370 pyl_corrinoid methyl 90.5 0.86 1.9E-05 38.9 6.4 82 155-237 102-190 (197)
318 cd08205 RuBisCO_IV_RLP Ribulos 90.4 7 0.00015 36.7 13.0 55 43-102 153-208 (367)
319 PF00809 Pterin_bind: Pterin b 90.4 3 6.5E-05 35.9 9.7 101 36-154 19-120 (210)
320 PF00478 IMPDH: IMP dehydrogen 90.2 0.59 1.3E-05 43.7 5.5 56 184-240 118-177 (352)
321 cd02068 radical_SAM_B12_BD B12 90.2 0.95 2.1E-05 35.4 6.0 66 174-240 26-97 (127)
322 PRK08385 nicotinate-nucleotide 90.1 0.82 1.8E-05 41.4 6.2 66 176-244 192-263 (278)
323 PRK05096 guanosine 5'-monophos 89.8 0.81 1.8E-05 42.5 6.0 54 185-240 121-179 (346)
324 COG2185 Sbm Methylmalonyl-CoA 89.8 0.86 1.9E-05 37.2 5.5 65 173-238 50-120 (143)
325 cd02069 methionine_synthase_B1 89.5 1 2.3E-05 39.0 6.2 75 155-229 106-185 (213)
326 PRK14905 triosephosphate isome 89.5 0.37 8E-06 45.1 3.6 32 214-245 213-247 (355)
327 PLN02424 ketopantoate hydroxym 89.4 2 4.4E-05 39.8 8.2 158 43-223 49-227 (332)
328 PRK02261 methylaspartate mutas 89.2 1.7 3.7E-05 35.0 6.9 54 170-223 38-94 (137)
329 TIGR01740 pyrF orotidine 5'-ph 89.1 3.7 8E-05 35.3 9.3 161 50-246 24-202 (213)
330 PF01729 QRPTase_C: Quinolinat 89.1 0.55 1.2E-05 39.3 4.0 64 177-243 91-158 (169)
331 KOG3055|consensus 89.0 0.34 7.3E-06 41.6 2.7 38 214-251 82-121 (263)
332 PLN02274 inosine-5'-monophosph 89.0 1.1 2.3E-05 44.0 6.5 60 179-240 253-317 (505)
333 COG0329 DapA Dihydrodipicolina 88.9 5.6 0.00012 36.2 10.8 169 43-242 32-211 (299)
334 TIGR01334 modD putative molybd 88.9 0.82 1.8E-05 41.4 5.3 64 176-242 198-265 (277)
335 TIGR02313 HpaI-NOT-DapA 2,4-di 88.6 3.4 7.3E-05 37.4 9.2 188 15-242 10-208 (294)
336 cd04823 ALAD_PBGS_aspartate_ri 88.1 9.4 0.0002 35.2 11.5 40 176-219 225-267 (320)
337 cd02811 IDI-2_FMN Isopentenyl- 87.7 2.6 5.6E-05 38.8 7.9 68 174-241 128-210 (326)
338 cd08210 RLP_RrRLP Ribulose bis 87.6 15 0.00033 34.5 13.1 54 43-101 148-202 (364)
339 cd03174 DRE_TIM_metallolyase D 87.4 5.4 0.00012 34.8 9.5 160 43-221 26-197 (265)
340 TIGR02660 nifV_homocitr homoci 87.4 6.3 0.00014 36.8 10.4 146 43-217 30-188 (365)
341 cd00408 DHDPS-like Dihydrodipi 87.2 11 0.00025 33.3 11.6 172 43-242 25-203 (281)
342 PRK12738 kbaY tagatose-bisphos 87.1 15 0.00033 33.4 12.3 61 183-243 165-235 (286)
343 PRK09195 gatY tagatose-bisphos 86.6 14 0.00031 33.5 11.9 60 184-243 166-235 (284)
344 PRK14566 triosephosphate isome 86.3 0.77 1.7E-05 41.1 3.5 29 214-242 212-243 (260)
345 PRK07896 nicotinate-nucleotide 86.2 1.6 3.5E-05 39.7 5.5 67 174-244 208-278 (289)
346 PRK00366 ispG 4-hydroxy-3-meth 86.0 5.2 0.00011 37.4 8.8 156 35-220 41-207 (360)
347 TIGR00284 dihydropteroate synt 85.9 3.1 6.7E-05 40.8 7.7 151 36-222 165-319 (499)
348 PRK06106 nicotinate-nucleotide 85.9 2.8 6.1E-05 38.0 6.9 61 177-243 205-269 (281)
349 TIGR03249 KdgD 5-dehydro-4-deo 85.6 8.5 0.00018 34.7 10.0 168 43-242 33-211 (296)
350 PRK07188 nicotinate phosphorib 85.5 3.6 7.9E-05 38.5 7.7 44 202-245 262-315 (352)
351 cd00423 Pterin_binding Pterin 85.5 1.9 4.1E-05 38.3 5.6 97 37-151 25-121 (258)
352 cd00945 Aldolase_Class_I Class 85.2 2.4 5.2E-05 34.9 5.9 60 173-241 13-86 (201)
353 PRK06559 nicotinate-nucleotide 85.0 3.1 6.6E-05 37.9 6.7 63 174-243 206-272 (290)
354 PRK08185 hypothetical protein; 85.0 21 0.00045 32.4 12.1 59 185-243 161-231 (283)
355 PLN02716 nicotinate-nucleotide 84.9 3.7 8.1E-05 37.7 7.3 59 185-243 228-293 (308)
356 KOG0538|consensus 84.7 3.4 7.3E-05 38.0 6.8 40 202-241 211-252 (363)
357 PRK09426 methylmalonyl-CoA mut 84.6 1.8 3.8E-05 44.3 5.5 66 173-238 620-690 (714)
358 PF00490 ALAD: Delta-aminolevu 84.6 6 0.00013 36.5 8.4 41 175-219 229-272 (324)
359 cd02809 alpha_hydroxyacid_oxid 84.6 5.1 0.00011 36.3 8.1 67 175-241 131-201 (299)
360 PRK00230 orotidine 5'-phosphat 84.6 2 4.3E-05 37.6 5.2 59 179-246 141-213 (230)
361 KOG1436|consensus 84.4 0.68 1.5E-05 42.7 2.2 75 173-247 266-367 (398)
362 COG0167 PyrD Dihydroorotate de 84.1 2 4.3E-05 39.5 5.2 77 43-122 180-270 (310)
363 cd04736 MDH_FMN Mandelate dehy 84.1 1.8 3.9E-05 40.6 5.0 38 202-240 224-264 (361)
364 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.9 9.6 0.00021 34.1 9.5 174 35-237 20-221 (275)
365 COG0821 gcpE 1-hydroxy-2-methy 83.8 7.7 0.00017 36.1 8.7 154 37-220 37-200 (361)
366 PF04481 DUF561: Protein of un 83.8 3.5 7.7E-05 36.1 6.2 70 172-249 26-99 (242)
367 cd07939 DRE_TIM_NifV Streptomy 83.7 14 0.00031 32.6 10.4 150 43-223 27-189 (259)
368 PF01645 Glu_synthase: Conserv 83.6 1.7 3.6E-05 40.9 4.6 70 175-244 216-307 (368)
369 PRK09016 quinolinate phosphori 83.6 3.5 7.7E-05 37.6 6.5 62 176-243 218-283 (296)
370 cd07943 DRE_TIM_HOA 4-hydroxy- 83.5 7.5 0.00016 34.4 8.6 153 43-223 29-192 (263)
371 cd00951 KDGDH 5-dehydro-4-deox 83.5 5 0.00011 36.2 7.5 65 176-241 24-102 (289)
372 COG0329 DapA Dihydrodipicolina 83.3 4.6 9.9E-05 36.8 7.2 66 175-241 27-107 (299)
373 COG1646 Predicted phosphate-bi 83.3 2.4 5.1E-05 37.4 5.0 67 174-245 29-98 (240)
374 cd04740 DHOD_1B_like Dihydroor 83.3 3 6.5E-05 37.5 6.0 77 42-122 172-260 (296)
375 PRK06543 nicotinate-nucleotide 83.2 4.1 8.9E-05 36.9 6.8 62 176-243 203-268 (281)
376 PRK06978 nicotinate-nucleotide 83.2 4.2 9.1E-05 37.1 6.8 62 176-243 215-280 (294)
377 COG4126 Hydantoin racemase [Am 82.9 11 0.00024 33.0 9.0 58 37-120 57-114 (230)
378 PF04131 NanE: Putative N-acet 82.8 3.8 8.2E-05 35.1 6.0 131 22-195 44-175 (192)
379 TIGR00612 ispG_gcpE 1-hydroxy- 82.8 12 0.00026 34.8 9.6 155 35-220 33-198 (346)
380 PRK12737 gatY tagatose-bisphos 82.5 31 0.00066 31.3 12.1 61 183-243 165-235 (284)
381 PRK04169 geranylgeranylglycery 82.3 2.1 4.6E-05 37.7 4.5 56 183-244 29-87 (232)
382 PRK05437 isopentenyl pyrophosp 81.9 2.2 4.7E-05 39.8 4.6 67 175-241 137-218 (352)
383 cd00958 DhnA Class I fructose- 81.9 18 0.00039 31.2 10.2 68 43-121 83-162 (235)
384 TIGR02026 BchE magnesium-proto 81.8 3.1 6.7E-05 40.5 5.8 68 174-241 51-123 (497)
385 PRK05458 guanosine 5'-monophos 81.7 3.8 8.2E-05 38.0 6.0 53 186-240 111-168 (326)
386 cd07948 DRE_TIM_HCS Saccharomy 81.6 18 0.0004 32.2 10.3 146 43-217 29-187 (262)
387 cd02065 B12-binding_like B12 b 81.4 3.1 6.7E-05 31.8 4.7 64 173-241 37-106 (125)
388 TIGR02321 Pphn_pyruv_hyd phosp 81.1 17 0.00038 33.0 10.1 64 176-243 166-238 (290)
389 COG1954 GlpP Glycerol-3-phosph 81.0 2.5 5.5E-05 35.6 4.2 96 128-242 74-173 (181)
390 TIGR01858 tag_bisphos_ald clas 80.9 35 0.00075 31.0 11.9 60 184-243 164-233 (282)
391 PRK05692 hydroxymethylglutaryl 80.7 23 0.00049 32.0 10.7 159 35-219 25-204 (287)
392 PRK12858 tagatose 1,6-diphosph 80.6 2.1 4.6E-05 39.8 4.0 44 204-247 231-283 (340)
393 cd02810 DHOD_DHPD_FMN Dihydroo 80.5 4.5 9.7E-05 36.1 6.1 76 42-122 117-196 (289)
394 PRK03620 5-dehydro-4-deoxygluc 80.3 7.6 0.00016 35.2 7.5 57 184-241 39-109 (303)
395 PF00682 HMGL-like: HMGL-like 80.2 4.3 9.3E-05 35.1 5.7 150 35-217 13-184 (237)
396 PRK07998 gatY putative fructos 80.2 5 0.00011 36.4 6.2 64 182-245 162-234 (283)
397 TIGR02151 IPP_isom_2 isopenten 79.9 2.9 6.2E-05 38.6 4.7 39 204-242 169-212 (333)
398 TIGR00343 pyridoxal 5'-phospha 79.8 12 0.00026 34.0 8.5 133 39-195 79-230 (287)
399 KOG0623|consensus 79.8 2.8 6E-05 39.1 4.4 43 201-243 472-518 (541)
400 PRK11858 aksA trans-homoaconit 79.6 20 0.00043 33.7 10.3 146 43-217 33-191 (378)
401 cd00952 CHBPH_aldolase Trans-o 79.1 7.8 0.00017 35.3 7.2 66 175-241 31-111 (309)
402 cd00947 TBP_aldolase_IIB Tagat 79.1 29 0.00062 31.4 10.7 60 184-243 159-229 (276)
403 PRK14040 oxaloacetate decarbox 79.0 12 0.00026 37.5 9.0 155 35-217 26-201 (593)
404 PLN02826 dihydroorotate dehydr 78.9 4.2 9.1E-05 38.8 5.6 97 14-122 262-370 (409)
405 PRK08227 autoinducer 2 aldolas 78.8 6.2 0.00014 35.4 6.3 124 108-245 100-231 (264)
406 COG1304 idi Isopentenyl diphos 78.7 3.1 6.6E-05 39.1 4.5 61 184-244 237-306 (360)
407 cd03319 L-Ala-DL-Glu_epimerase 78.6 9.3 0.0002 34.6 7.6 91 139-241 165-259 (316)
408 TIGR02090 LEU1_arch isopropylm 78.6 9 0.0002 35.8 7.6 153 43-223 29-191 (363)
409 TIGR02313 HpaI-NOT-DapA 2,4-di 78.6 8.4 0.00018 34.8 7.2 66 175-241 23-103 (294)
410 TIGR03249 KdgD 5-dehydro-4-deo 78.4 9 0.0002 34.6 7.4 67 175-241 28-107 (296)
411 cd00408 DHDPS-like Dihydrodipi 78.3 9.1 0.0002 34.0 7.3 67 174-241 19-100 (281)
412 PRK07259 dihydroorotate dehydr 78.2 4.3 9.4E-05 36.6 5.2 76 43-122 176-263 (301)
413 PRK01130 N-acetylmannosamine-6 78.1 9.7 0.00021 32.6 7.2 64 172-243 22-98 (221)
414 TIGR01037 pyrD_sub1_fam dihydr 78.0 8.9 0.00019 34.5 7.2 75 43-121 176-262 (300)
415 cd04724 Tryptophan_synthase_al 76.4 12 0.00027 32.8 7.5 60 43-120 98-157 (242)
416 PRK11197 lldD L-lactate dehydr 76.4 4.8 0.0001 38.1 5.1 41 201-241 232-274 (381)
417 PF00701 DHDPS: Dihydrodipicol 76.4 18 0.00039 32.3 8.7 187 16-242 12-207 (289)
418 PRK13753 dihydropteroate synth 76.3 6.1 0.00013 35.8 5.5 77 36-121 25-102 (279)
419 COG5564 Predicted TIM-barrel e 76.1 20 0.00043 31.7 8.3 90 153-244 145-256 (276)
420 KOG4201|consensus 76.1 7.7 0.00017 34.1 5.8 75 172-246 192-272 (289)
421 PRK07807 inosine 5-monophospha 76.0 7.8 0.00017 37.8 6.6 62 178-240 231-296 (479)
422 PRK12331 oxaloacetate decarbox 75.8 30 0.00064 33.5 10.4 169 43-237 33-226 (448)
423 KOG4013|consensus 75.6 2.9 6.3E-05 36.1 3.0 48 186-233 150-199 (255)
424 cd03315 MLE_like Muconate lact 75.3 9.9 0.00022 33.5 6.7 92 138-240 115-210 (265)
425 PRK14041 oxaloacetate decarbox 74.8 8.6 0.00019 37.4 6.5 101 30-151 151-253 (467)
426 cd00946 FBP_aldolase_IIA Class 74.7 15 0.00034 34.2 7.9 48 186-233 200-266 (345)
427 PRK03620 5-dehydro-4-deoxygluc 74.7 39 0.00084 30.6 10.5 41 202-242 169-213 (303)
428 cd04739 DHOD_like Dihydroorota 74.7 9.7 0.00021 35.0 6.6 76 43-122 182-266 (325)
429 COG3010 NanE Putative N-acetyl 74.7 32 0.0007 30.0 9.2 136 20-197 76-213 (229)
430 KOG2550|consensus 74.7 8.3 0.00018 36.9 6.1 56 184-240 261-320 (503)
431 PF02548 Pantoate_transf: Keto 74.6 2.8 6.1E-05 37.6 2.9 158 45-218 32-201 (261)
432 PRK10481 hypothetical protein; 74.4 14 0.00031 32.4 7.2 34 30-64 71-104 (224)
433 TIGR00262 trpA tryptophan synt 74.3 24 0.00053 31.3 8.9 31 43-88 109-139 (256)
434 TIGR00167 cbbA ketose-bisphosp 74.3 11 0.00023 34.3 6.7 60 184-243 169-239 (288)
435 PRK12857 fructose-1,6-bisphosp 74.2 11 0.00023 34.3 6.6 60 184-243 166-235 (284)
436 PRK13962 bifunctional phosphog 74.0 2.8 6E-05 42.3 3.0 29 214-242 599-630 (645)
437 PRK09140 2-dehydro-3-deoxy-6-p 73.8 11 0.00023 32.5 6.2 65 174-241 23-91 (206)
438 cd00954 NAL N-Acetylneuraminic 73.6 14 0.0003 33.2 7.2 66 175-241 23-104 (288)
439 cd04727 pdxS PdxS is a subunit 73.4 20 0.00044 32.5 8.1 63 39-122 77-139 (283)
440 TIGR00683 nanA N-acetylneurami 73.4 68 0.0015 28.8 11.7 170 43-242 28-207 (290)
441 PRK07565 dihydroorotate dehydr 73.2 11 0.00024 34.7 6.6 74 43-121 121-196 (334)
442 TIGR00683 nanA N-acetylneurami 73.0 16 0.00035 32.9 7.5 66 175-241 23-104 (290)
443 cd00950 DHDPS Dihydrodipicolin 73.0 68 0.0015 28.5 11.8 169 43-242 28-206 (284)
444 PRK07709 fructose-bisphosphate 72.9 12 0.00027 33.9 6.7 61 183-243 166-236 (285)
445 TIGR01232 lacD tagatose 1,6-di 72.9 18 0.00039 33.5 7.7 116 48-168 198-321 (325)
446 TIGR01768 GGGP-family geranylg 72.7 6 0.00013 34.7 4.4 61 177-243 18-81 (223)
447 PRK04147 N-acetylneuraminate l 72.6 17 0.00036 32.8 7.5 68 174-242 25-108 (293)
448 TIGR02317 prpB methylisocitrat 72.4 6.3 0.00014 35.8 4.7 48 35-102 160-207 (285)
449 PRK05286 dihydroorotate dehydr 72.2 4.9 0.00011 37.3 4.0 77 43-121 232-317 (344)
450 PRK14042 pyruvate carboxylase 71.9 14 0.00031 37.0 7.4 153 35-217 25-200 (596)
451 TIGR00126 deoC deoxyribose-pho 71.9 12 0.00027 32.3 6.2 58 175-233 134-195 (211)
452 PRK12399 tagatose 1,6-diphosph 71.8 26 0.00057 32.4 8.5 125 37-167 187-319 (324)
453 PLN02591 tryptophan synthase 71.7 22 0.00048 31.6 7.9 60 43-120 100-159 (250)
454 PRK03094 hypothetical protein; 71.5 6 0.00013 29.1 3.5 42 185-232 34-75 (80)
455 TIGR00674 dapA dihydrodipicoli 71.3 35 0.00076 30.5 9.3 170 43-242 26-204 (285)
456 PRK04147 N-acetylneuraminate l 71.1 67 0.0015 28.8 11.1 171 43-242 31-209 (293)
457 COG0134 TrpC Indole-3-glycerol 71.1 14 0.0003 33.1 6.4 67 172-238 65-134 (254)
458 TIGR01093 aroD 3-dehydroquinat 70.7 53 0.0012 28.4 10.0 68 152-223 117-187 (228)
459 PF04551 GcpE: GcpE protein; 70.5 3.3 7.1E-05 38.7 2.4 157 40-220 35-207 (359)
460 PRK02048 4-hydroxy-3-methylbut 70.5 34 0.00074 34.3 9.5 70 36-122 41-111 (611)
461 cd00954 NAL N-Acetylneuraminic 70.5 78 0.0017 28.3 11.4 39 202-242 167-208 (288)
462 PLN02417 dihydrodipicolinate s 70.1 23 0.00051 31.7 7.9 90 43-149 29-122 (280)
463 COG0407 HemE Uroporphyrinogen- 70.1 59 0.0013 30.5 10.6 128 31-182 184-311 (352)
464 cd00951 KDGDH 5-dehydro-4-deox 70.0 81 0.0018 28.3 11.4 41 202-242 162-206 (289)
465 PLN02417 dihydrodipicolinate s 69.9 19 0.00041 32.3 7.2 57 184-241 33-104 (280)
466 TIGR03471 HpnJ hopanoid biosyn 69.2 7.4 0.00016 37.5 4.7 56 186-241 68-128 (472)
467 PRK13397 3-deoxy-7-phosphohept 69.0 85 0.0018 28.0 15.6 179 25-243 22-222 (250)
468 PRK12581 oxaloacetate decarbox 69.0 29 0.00063 33.8 8.6 154 42-219 41-211 (468)
469 PRK12581 oxaloacetate decarbox 68.9 16 0.00034 35.6 6.8 67 43-122 170-238 (468)
470 TIGR02082 metH 5-methyltetrahy 68.9 12 0.00026 40.6 6.4 62 169-230 766-830 (1178)
471 PLN02925 4-hydroxy-3-methylbut 68.8 34 0.00074 34.9 9.2 71 35-122 109-180 (733)
472 cd04738 DHOD_2_like Dihydrooro 68.6 11 0.00024 34.6 5.5 77 43-121 223-308 (327)
473 PRK06852 aldolase; Validated 68.5 25 0.00055 32.2 7.7 101 139-244 156-269 (304)
474 PF01116 F_bP_aldolase: Fructo 68.4 12 0.00027 33.9 5.7 52 182-233 164-226 (287)
475 PRK11572 copper homeostasis pr 68.0 25 0.00053 31.4 7.3 70 179-249 14-101 (248)
476 PF00218 IGPS: Indole-3-glycer 68.0 14 0.00031 32.9 5.9 90 152-244 46-142 (254)
477 COG0826 Collagenase and relate 67.9 12 0.00026 34.9 5.6 152 29-223 14-172 (347)
478 TIGR03326 rubisco_III ribulose 67.7 47 0.001 31.8 9.6 62 177-242 228-307 (412)
479 cd08213 RuBisCO_large_III Ribu 67.7 37 0.0008 32.5 8.9 65 174-242 212-294 (412)
480 cd00950 DHDPS Dihydrodipicolin 67.6 21 0.00046 31.7 7.1 59 183-241 31-103 (284)
481 PRK15452 putative protease; Pr 67.6 23 0.0005 34.2 7.6 144 29-212 11-155 (443)
482 PRK03170 dihydrodipicolinate s 67.5 92 0.002 27.8 12.3 41 202-242 166-207 (292)
483 PRK08610 fructose-bisphosphate 67.4 19 0.00041 32.7 6.6 61 183-243 166-236 (286)
484 TIGR03151 enACPred_II putative 67.2 12 0.00027 34.1 5.5 69 40-122 120-190 (307)
485 TIGR01520 FruBisAldo_II_A fruc 67.0 62 0.0014 30.4 10.1 57 186-242 212-289 (357)
486 PRK09250 fructose-bisphosphate 66.6 9.4 0.0002 35.7 4.6 41 203-243 267-321 (348)
487 cd04737 LOX_like_FMN L-Lactate 66.4 11 0.00024 35.2 5.1 38 202-240 209-249 (351)
488 cd00740 MeTr MeTr subgroup of 66.2 13 0.00028 33.0 5.3 73 36-121 26-98 (252)
489 TIGR01361 DAHP_synth_Bsub phos 66.2 97 0.0021 27.6 15.2 140 78-246 77-235 (260)
490 PRK13802 bifunctional indole-3 65.8 20 0.00043 36.6 7.1 89 154-244 50-144 (695)
491 PRK13398 3-deoxy-7-phosphohept 65.8 1E+02 0.0022 27.6 12.6 182 25-246 34-237 (266)
492 PRK12331 oxaloacetate decarbox 65.6 11 0.00024 36.4 5.1 67 43-122 161-229 (448)
493 KOG2794|consensus 65.5 89 0.0019 28.4 10.2 70 8-92 47-125 (340)
494 PRK04161 tagatose 1,6-diphosph 65.5 20 0.00044 33.2 6.5 116 47-168 198-322 (329)
495 PRK04180 pyridoxal biosynthesi 65.1 22 0.00048 32.4 6.5 63 39-122 86-148 (293)
496 PF03932 CutC: CutC family; I 65.0 18 0.00039 31.2 5.7 70 179-249 13-100 (201)
497 PRK13305 sgbH 3-keto-L-gulonat 64.9 6.6 0.00014 34.2 3.1 44 203-246 150-197 (218)
498 PRK09282 pyruvate carboxylase 64.7 13 0.00029 37.1 5.6 66 43-121 161-228 (592)
499 PRK12330 oxaloacetate decarbox 64.7 68 0.0015 31.6 10.3 174 35-237 26-229 (499)
500 TIGR02319 CPEP_Pphonmut carbox 64.6 8.4 0.00018 35.1 3.8 48 35-102 164-211 (294)
No 1
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=100.00 E-value=3.4e-61 Score=412.60 Aligned_cols=232 Identities=34% Similarity=0.582 Sum_probs=222.4
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
-+|+-+||.|+ ||+|.+.+++++|+++|++||.+|+++|+ |+|++|||+|.||++. .||++.++|++++++++
T Consensus 9 ~vIGvvHL~PL----PGsp~~~~~~~~vid~A~~dA~~leegG~-DavivEN~gD~Pf~k~--v~~~tvaaMa~iv~~v~ 81 (263)
T COG0434 9 PVIGVVHLLPL----PGSPYDAGSLEAVIDRAVRDAAALEEGGV-DAVIVENYGDAPFLKD--VGPETVAAMAVIVREVV 81 (263)
T ss_pred ceEEEEecCCC----CCCccccCCHHHHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC--CChHHHHHHHHHHHHHH
Confidence 57899999998 99996668999999999999999999999 9999999999999994 79999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+..+ +|+|+|+++|+++.++++|++.|++|+|+|+|++++++++|+|+++++|++|||++++ .+|++|+|+++||+.
T Consensus 82 r~v~--iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-~~v~vlADv~VKHa~ 158 (263)
T COG0434 82 REVS--IPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-SRVKVLADVHVKHAV 158 (263)
T ss_pred Hhcc--ccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-CCcEEEeecchhccc
Confidence 9999 8999999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred CCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 167 HAITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
|+ .+.++++.++.+. +.++|++|+||.+||.+++.+.|+.+|+.+++||++|+|++++|+.++|+ |||+||||+||
T Consensus 159 ~l--~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK 236 (263)
T COG0434 159 HL--GNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLK 236 (263)
T ss_pred cc--CCcCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEc
Confidence 96 4558999999875 67899999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecCeec
Q psy9039 245 QGGRTF 250 (251)
Q Consensus 245 ~~g~~~ 250 (251)
+||+||
T Consensus 237 ~~G~~~ 242 (263)
T COG0434 237 KGGVTW 242 (263)
T ss_pred cCCEec
Confidence 999987
No 2
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=100.00 E-value=1.1e-60 Score=420.84 Aligned_cols=232 Identities=44% Similarity=0.670 Sum_probs=222.6
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
.||+-+|+.|+ ||+|.|+++++.|+++|++|+++|+++|+ |+|+||||+|.||..+ .+|++.++|+++++++|
T Consensus 4 piIGmvHL~pL----PGsp~~~~~~~~iie~A~~ea~~l~~~Gv-DgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~ 76 (254)
T PF03437_consen 4 PIIGMVHLPPL----PGSPRYDGSMEEIIERAVREAEALEEGGV-DGIIVENMGDVPYPKR--VGPETVAAMARIAREVR 76 (254)
T ss_pred CEEEEEcCCCC----CcCCCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHH
Confidence 47889999887 99999999999999999999999999999 9999999999999987 79999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+.++ +|+|+|+++|++.+++++|.++|++|+|++.|+|++++++|++++++.+++|||++++++ +++|+||++||+.
T Consensus 77 ~~~~--~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~ 153 (254)
T PF03437_consen 77 REVS--VPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSS 153 (254)
T ss_pred HhCC--CCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcc
Confidence 9998 899999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred CCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 167 HAITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
|+ .++++++.++.+. +.++|+++|||.+||.++++++++++|+.+++||++|+|+|++|+.++++ |||+||||+||
T Consensus 154 ~l--~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K 231 (254)
T PF03437_consen 154 PL--ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSYADGAIVGSYFK 231 (254)
T ss_pred cC--CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHhCCEEEEeeeee
Confidence 96 5678889988884 68999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ecCeec
Q psy9039 245 QGGRTF 250 (251)
Q Consensus 245 ~~g~~~ 250 (251)
+||+|+
T Consensus 232 ~~G~~~ 237 (254)
T PF03437_consen 232 KDGKWE 237 (254)
T ss_pred eCCEeC
Confidence 999986
No 3
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=100.00 E-value=3.4e-58 Score=405.29 Aligned_cols=232 Identities=31% Similarity=0.517 Sum_probs=221.3
Q ss_pred EEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHH
Q psy9039 7 VIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIR 86 (251)
Q Consensus 7 ~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr 86 (251)
.+|+-+|+.|. ||+|.|.+++++|+++|++|+++|+++|+ |+|+||||+|+||.. ..+|+|.++|+++++++|
T Consensus 3 pvIGmvHl~pL----PGsP~~~~~~~~i~e~A~~ea~~l~~~Gv-D~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~ 75 (257)
T TIGR00259 3 PVIGMVHLLPL----PGSPSFDDNLNAVIDKAWKDAMALEEGGV-DAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLK 75 (257)
T ss_pred CEEEEEcCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHhCCC-CEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHH
Confidence 47889999887 99999998999999999999999999999 999999999999987 489999999999999999
Q ss_pred HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC
Q psy9039 87 KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS 166 (251)
Q Consensus 87 ~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~ 166 (251)
+.++ +|+|+|+++|++.+++++|.++|++|+|++.|+|++++++|++++++.|++|||++++ .++++|+||++||+.
T Consensus 76 ~~~~--~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-~~v~i~adV~~kh~~ 152 (257)
T TIGR00259 76 SDVS--IPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-SEVKILADIVVKHAV 152 (257)
T ss_pred HhcC--CCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-CCcEEEeceeecccC
Confidence 9999 8999999999999999999999999999999999999999999999999999999999 699999999999998
Q ss_pred CCCCCcccHHHHHHHhhhc-cccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc-CCEEEEeceE
Q psy9039 167 HAITADVDITETAKAASFF-LSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT-ADALIIGSHF 243 (251)
Q Consensus 167 ~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~ 243 (251)
| +.++++++.++++.|. ++|++||||..||.+.+++.++++|+.. ++|+++|||+|++|++++++ |||+||||+|
T Consensus 153 ~--l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 153 H--LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred c--CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCc
Confidence 7 5789999999999875 5999999999999999999999999865 79999999999999999999 9999999999
Q ss_pred eecCeec
Q psy9039 244 KQGGRTF 250 (251)
Q Consensus 244 ~~~g~~~ 250 (251)
|++|+|+
T Consensus 231 K~~G~~~ 237 (257)
T TIGR00259 231 KKDGVFN 237 (257)
T ss_pred ccCCccC
Confidence 9999875
No 4
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-40 Score=292.79 Aligned_cols=199 Identities=25% Similarity=0.401 Sum_probs=175.7
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH-----------
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR----------- 80 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~----------- 80 (251)
+-++||+|+ |||+++.|.+.+ ++|+++|+ |+|| +|+|||||++|||+||+|..|
T Consensus 17 ~a~i~yit~--GdP~~e~s~e~i--------~~L~~~Ga-D~iE----LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~ 81 (265)
T COG0159 17 GALIPYVTA--GDPDLETSLEII--------KTLVEAGA-DILE----LGVPFSDPVADGPTIQAAHLRALAAGVTLEDT 81 (265)
T ss_pred CCeEEEEeC--CCCCHHHHHHHH--------HHHHhCCC-CEEE----ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHH
Confidence 358999999 999999999999 99999999 9996 699999999999999999998
Q ss_pred --HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 81 --LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 81 --~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
+++++|+.... +|+++|.|+|+ +.++++ .+|++.+ ...|.+|+++|| +.++..+.++++.+.
T Consensus 82 lel~~~~r~~~~~-~Pivlm~Y~Np-i~~~Gi-----e~F~~~~----~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 82 LELVEEIRAKGVK-VPIVLMTYYNP-IFNYGI-----EKFLRRA----KEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHHHHHHHhcCCC-CCEEEEEeccH-HHHhhH-----HHHHHHH----HHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 45778866332 69999999998 999999 4899985 667799999999 667778888888888
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
|.+++ | +|+++|++++++.++ | |+++..+|||.+....... ++++++|+++++||++|||| ++++++
T Consensus 151 I~lva--------P-tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~ 221 (265)
T COG0159 151 IFLVA--------P-TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAA 221 (265)
T ss_pred EEEeC--------C-CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHH
Confidence 88862 4 478899999999996 8 8999999999998755544 78999999999999999999 699999
Q ss_pred Hhhc-CCEEEEeceEee
Q psy9039 230 HYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~-ADGvIVGS~~~~ 245 (251)
++.+ ||||||||+|++
T Consensus 222 ~v~~~ADGVIVGSAiV~ 238 (265)
T COG0159 222 QVAEAADGVIVGSAIVK 238 (265)
T ss_pred HHHHhCCeEEEcHHHHH
Confidence 9999 999999999976
No 5
>PLN02591 tryptophan synthase
Probab=100.00 E-value=4.7e-39 Score=283.92 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=172.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH------------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR------------ 80 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~------------ 80 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|
T Consensus 3 ~li~yi~a--G~P~~e~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 67 (250)
T PLN02591 3 AFIPYITA--GDPDLDTTAEAL--------RLLDACGA-DVIE----LGVPYSDPLADGPVIQAAATRALEKGTTLDSVI 67 (250)
T ss_pred ceEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH
Confidence 37999999 999999999999 89999999 9997 599999999999999999998
Q ss_pred -HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 81 -LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 81 -~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
+++++|+..+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|+|.|| ..++....++++.+.|
T Consensus 68 ~~~~~~r~~~~--~p~ilm~Y~N~-i~~~G~-----~~F~~~~----~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 68 SMLKEVAPQLS--CPIVLFTYYNP-ILKRGI-----DKFMATI----KEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHhcCCC--CCEEEEecccH-HHHhHH-----HHHHHHH----HHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence 4577886666 79999999998 899999 5999975 667799999999 5566777788888777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +++++|+.++++.+. | |+++..+|||.+++.+... +.++++|+++++||++|||| |++|+++
T Consensus 136 ~lv~--------P-tt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~ 206 (250)
T PLN02591 136 LLTT--------P-TTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ 206 (250)
T ss_pred EEeC--------C-CCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH
Confidence 7752 4 366789999999987 7 8899999999998877776 55999999999999999999 5999999
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+++ |||+||||+|++
T Consensus 207 ~~~~GADGvIVGSalVk 223 (250)
T PLN02591 207 IAGWGADGVIVGSAMVK 223 (250)
T ss_pred HHhcCCCEEEECHHHHH
Confidence 986 999999999954
No 6
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=100.00 E-value=4.7e-39 Score=284.81 Aligned_cols=198 Identities=24% Similarity=0.399 Sum_probs=163.4
Q ss_pred eecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH-----------
Q psy9039 12 MHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR----------- 80 (251)
Q Consensus 12 ~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~----------- 80 (251)
.-++||+++ |+|+.+.+.+.+ +.|.++|+ |.||| |+|||||.+|||+||.|+.+
T Consensus 10 ~~li~yita--G~P~~~~~~~~~--------~~l~~~Ga-D~iEi----GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~ 74 (259)
T PF00290_consen 10 KALIPYITA--GYPDLETTLEIL--------KALEEAGA-DIIEI----GIPFSDPVADGPVIQKASQRALKNGFTLEKI 74 (259)
T ss_dssp TEEEEEEET--TSSSHHHHHHHH--------HHHHHTTB-SSEEE----E--SSSCTTSSHHHHHHHHHHHHTT--HHHH
T ss_pred CeEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEEE----CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
Confidence 458999999 999999999999 89999999 99975 99999999999999999997
Q ss_pred --HHHHHH-HhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCC
Q psy9039 81 --LCAEIR-KVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGAD 152 (251)
Q Consensus 81 --~i~~vr-~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~ 152 (251)
+++++| +... +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|+|+|| ..++....++.|.+
T Consensus 75 ~~~~~~ir~~~~~--~pivlm~Y~N~-i~~~G~-----e~F~~~~----~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~ 142 (259)
T PF00290_consen 75 FELVKEIRKKEPD--IPIVLMTYYNP-IFQYGI-----ERFFKEA----KEAGVDGLIIPDLPPEESEELREAAKKHGLD 142 (259)
T ss_dssp HHHHHHHHHHCTS--SEEEEEE-HHH-HHHH-H-----HHHHHHH----HHHTEEEEEETTSBGGGHHHHHHHHHHTT-E
T ss_pred HHHHHHHhccCCC--CCEEEEeeccH-Hhccch-----HHHHHHH----HHcCCCEEEEcCCChHHHHHHHHHHHHcCCe
Confidence 468899 4445 69999999998 899998 4899875 566799999999 44555556677777
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
.|.+++ | +|+++|++++++.+. | |+++..++||.++..+..+ +.++++|+.+++||++|||| |++++
T Consensus 143 ~I~lv~--------p-~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~ 213 (259)
T PF00290_consen 143 LIPLVA--------P-TTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQA 213 (259)
T ss_dssp EEEEEE--------T-TS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHH
T ss_pred EEEEEC--------C-CCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHH
Confidence 777752 3 378899999999887 8 8899999999998665554 77999999999999999999 69999
Q ss_pred HHhhc-CCEEEEeceEee
Q psy9039 229 EHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~-ADGvIVGS~~~~ 245 (251)
+++.. |||+||||+|++
T Consensus 214 ~~~~~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 214 KKLAAGADGVIVGSAFVK 231 (259)
T ss_dssp HHHHTTSSEEEESHHHHH
T ss_pred HHHHccCCEEEECHHHHH
Confidence 99998 999999999975
No 7
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=100.00 E-value=3.5e-38 Score=280.48 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=171.4
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|.
T Consensus 16 ali~yi~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~ 80 (263)
T CHL00200 16 ALIPFITA--GDPDIVITKKAL--------KILDKKGA-DIIE----LGIPYSDPLADGPIIQEASNRALKQGINLNKIL 80 (263)
T ss_pred cEEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 89999999 9997 5999999999999999999984
Q ss_pred --HHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcc
Q psy9039 82 --CAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNV 154 (251)
Q Consensus 82 --i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i 154 (251)
++++|+..+ +|+.+|.|+|+ ++++++ .+|++.+ ..+|.+|++.|| ..++.+..++.|.+.|
T Consensus 81 ~~~~~~r~~~~--~p~vlm~Y~N~-i~~~G~-----e~F~~~~----~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 81 SILSEVNGEIK--APIVIFTYYNP-VLHYGI-----NKFIKKI----SQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHHHHhcCCC--CCEEEEecccH-HHHhCH-----HHHHHHH----HHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 577886655 79999999998 899999 5999975 667799999999 5666677788888777
Q ss_pred hhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 155 LVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 155 ~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+++ | +|+++|++.+++.+. | |+++..++||.++...... +.++++|+++++|+++|||| +++++++
T Consensus 149 ~lv~--------P-tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~ 219 (263)
T CHL00200 149 LLIA--------P-TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ 219 (263)
T ss_pred EEEC--------C-CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH
Confidence 7762 4 367789999999998 8 8899999999986666555 67889999999999999999 5999999
Q ss_pred hhc--CCEEEEeceEe
Q psy9039 231 YMT--ADALIIGSHFK 244 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~ 244 (251)
+.. |||+||||+|+
T Consensus 220 ~~~~GADGvVVGSalv 235 (263)
T CHL00200 220 IKGWNINGIVIGSACV 235 (263)
T ss_pred HHhcCCCEEEECHHHH
Confidence 885 99999999995
No 8
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=100.00 E-value=9e-37 Score=270.84 Aligned_cols=197 Identities=23% Similarity=0.378 Sum_probs=170.2
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+++.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..+.
T Consensus 13 ~li~yi~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~ 77 (258)
T PRK13111 13 ALIPYITA--GDPDLETSLEII--------KALVEAGA-DIIE----LGIPFSDPVADGPVIQAASLRALAAGVTLADVF 77 (258)
T ss_pred cEEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 88999999 9997 5999999999999999998874
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
++++|+. .+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|++.|| ..++....+++|.+.
T Consensus 78 ~~~~~~r~~~~~--~p~vlm~Y~N~-i~~~G~-----e~f~~~~----~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~ 145 (258)
T PRK13111 78 ELVREIREKDPT--IPIVLMTYYNP-IFQYGV-----ERFAADA----AEAGVDGLIIPDLPPEEAEELRAAAKKHGLDL 145 (258)
T ss_pred HHHHHHHhcCCC--CCEEEEecccH-HhhcCH-----HHHHHHH----HHcCCcEEEECCCCHHHHHHHHHHHHHcCCcE
Confidence 5778844 44 69999999998 899999 5899975 667799999999 556666677788777
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
|.+++ | +++++|++.+++.+. | |+++..++||.+++.+... +.++++|+.+++||++|||| +++++.
T Consensus 146 I~lva--------p-~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~ 216 (258)
T PRK13111 146 IFLVA--------P-TTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAA 216 (258)
T ss_pred EEEeC--------C-CCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHH
Confidence 77652 3 366789999998887 7 7889999999988887776 68999999999999999999 799999
Q ss_pred Hhhc-CCEEEEeceEee
Q psy9039 230 HYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~-ADGvIVGS~~~~ 245 (251)
+++. |||+||||+|++
T Consensus 217 ~~~~~ADGviVGSaiv~ 233 (258)
T PRK13111 217 AIAAVADGVIVGSALVK 233 (258)
T ss_pred HHHHhCCEEEEcHHHHH
Confidence 9999 999999999965
No 9
>KOG4175|consensus
Probab=100.00 E-value=1.8e-35 Score=248.40 Aligned_cols=197 Identities=21% Similarity=0.306 Sum_probs=166.9
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+|+ |+|+.+.+.+.+ +-|+++|. |.|+ +|+|||||++|||.||++..+.
T Consensus 19 aLvtfiTa--G~P~v~~T~kil--------kglq~gG~-dIIE----LGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~ 83 (268)
T KOG4175|consen 19 ALVTFITA--GDPDVSTTAKIL--------KGLQSGGS-DIIE----LGVPFSDPLADGPTIQAANRRALLNGTTLNSII 83 (268)
T ss_pred eEEEEEec--CCCcHHHHHHHH--------HHHhcCCc-CeEE----ecCccCccccCCchhhhhHHHHHHcCCcHHHHH
Confidence 58999999 999999999999 99999999 9996 6999999999999999999973
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
+++.|.+ .. +|+.+|.|||+ +..++. ++|+++. ..+|..|+|++| +..+..++++.+.+.
T Consensus 84 emvk~ar~~gvt--~PIiLmgYYNP-Il~yG~-----e~~iq~a----k~aGanGfiivDlPpEEa~~~Rne~~k~gisl 151 (268)
T KOG4175|consen 84 EMVKEARPQGVT--CPIILMGYYNP-ILRYGV-----ENYIQVA----KNAGANGFIIVDLPPEEAETLRNEARKHGISL 151 (268)
T ss_pred HHHHHhcccCcc--cceeeeecccH-HHhhhH-----HHHHHHH----HhcCCCceEeccCChHHHHHHHHHHHhcCceE
Confidence 3455544 44 79999999998 999999 5999974 667799999999 344445556666666
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNV 228 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v 228 (251)
+.+++ | .|+++|++.++..|. | |.++.+++||.+......+ ++++|+|+.+ +.|+.+|||| ++|++
T Consensus 152 vpLva--------P-sTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf 222 (268)
T KOG4175|consen 152 VPLVA--------P-STTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHF 222 (268)
T ss_pred EEeeC--------C-CChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHH
Confidence 66542 4 378899999999987 7 8899999999987766655 7899999998 9999999999 69999
Q ss_pred HHhhc-CCEEEEeceEee
Q psy9039 229 EHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 229 ~~~~~-ADGvIVGS~~~~ 245 (251)
.++-. |||++|||.+++
T Consensus 223 ~qVgsvaDGVvvGSkiv~ 240 (268)
T KOG4175|consen 223 KQVGSVADGVVVGSKIVK 240 (268)
T ss_pred HhhhhhccceEecHHHHH
Confidence 99998 999999999864
No 10
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=100.00 E-value=3.3e-34 Score=254.44 Aligned_cols=197 Identities=19% Similarity=0.355 Sum_probs=166.8
Q ss_pred ecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHH-----------
Q psy9039 13 HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRL----------- 81 (251)
Q Consensus 13 ~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~----------- 81 (251)
-++||+++ |+|+.+.+.+.+ ++|+++|+ |.|| +|+|||||++|||+||+|..|.
T Consensus 11 ~li~y~~a--G~P~~~~~~~~~--------~~l~~~Ga-d~iE----lGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~ 75 (256)
T TIGR00262 11 AFIPFVTA--GDPTLETSLEII--------KTLIEAGA-DALE----LGVPFSDPLADGPTIQAADLRALRAGMTPEKCF 75 (256)
T ss_pred eEEEEEeC--CCCCHHHHHHHH--------HHHHHcCC-CEEE----ECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH
Confidence 58999999 999999999999 89999999 9997 5999999999999999999985
Q ss_pred --HHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCc
Q psy9039 82 --CAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADN 153 (251)
Q Consensus 82 --i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~ 153 (251)
++++|+. .+ +|+.+|.|+|+ +.++++ .+|++.+ ..+|.+|++.+| ..++....++.+.+.
T Consensus 76 ~~v~~ir~~~~~--~plv~m~Y~Np-i~~~G~-----e~f~~~~----~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 76 ELLKKVRQKHPN--IPIGLLTYYNL-IFRKGV-----EEFYAKC----KEVGVDGVLVADLPLEESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHHHHHhcCCC--CCEEEEEeccH-HhhhhH-----HHHHHHH----HHcCCCEEEECCCChHHHHHHHHHHHHCCCcE
Confidence 6788876 56 79889999997 899999 4888874 567799999999 445556667777666
Q ss_pred chhhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+.+++ | +|+.+++..+++.+. | |.++..++||.++...++ .++++++|+.+++||++|||| |+++++
T Consensus 144 i~lv~--------P-~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~ 214 (256)
T TIGR00262 144 IFLVA--------P-NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVK 214 (256)
T ss_pred EEEEC--------C-CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHH
Confidence 65652 3 256678889998887 7 777877999998666555 488999999999999999999 599999
Q ss_pred Hhhc--CCEEEEeceEee
Q psy9039 230 HYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~ 245 (251)
++.. |||+||||+|++
T Consensus 215 ~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 215 QAIDAGADGVIVGSAIVK 232 (256)
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 9886 999999999975
No 11
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.96 E-value=3.5e-30 Score=226.98 Aligned_cols=196 Identities=24% Similarity=0.392 Sum_probs=159.9
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHH-------------H
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMT-------------R 80 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~-------------~ 80 (251)
++||+++ |+|+++.+.+.+ +.|+++|+ |.|+ +|+|||||.+|||.+|.+.. .
T Consensus 2 li~y~~~--G~P~~~~~~~~~--------~~l~~~Ga-d~ie----l~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~ 66 (242)
T cd04724 2 LIPYITA--GDPDLETTLEIL--------KALVEAGA-DIIE----LGIPFSDPVADGPVIQAASERALANGVTLKDVLE 66 (242)
T ss_pred cEEEEeC--CCCCHHHHHHHH--------HHHHHCCC-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 6899999 999999888888 88999999 9997 59999999999999998773 4
Q ss_pred HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC-----cchhHHHHHhcCCCcch
Q psy9039 81 LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ-----AGPLLRYRKQIGADNVL 155 (251)
Q Consensus 81 ~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d-----a~e~~~~r~~l~~~~i~ 155 (251)
+++++|+..+ +|+.+|+|+|+ ..++|+ .+|++.+ ..+|.+|++.|| ..++.+..++++.+.+.
T Consensus 67 ~~~~vr~~~~--~pv~lm~y~n~-~~~~G~-----~~fi~~~----~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 67 LVKEIRKKNT--IPIVLMGYYNP-ILQYGL-----ERFLRDA----KEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHhhcCC--CCEEEEEecCH-HHHhCH-----HHHHHHH----HHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 7788988776 79999999998 888888 4888875 556789999988 22444555666655555
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhh-h-ccccEEEecCCCCCCCCCH-HHHHHHHhcCCCCEEEecCCC-hHhHHHh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAAS-F-FLSDGLIITGNATGDPADV-SQLMSVKNAVDLPILIGSGVT-SDNVEHY 231 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~-~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~~~PV~vG~GI~-~~~v~~~ 231 (251)
+++ | .|+.++++.+++.+. | |.++..++||.+++...+. +.++++|+.+++||++||||+ ++|++++
T Consensus 135 ~i~--------P-~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~ 205 (242)
T cd04724 135 LVA--------P-TTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEV 205 (242)
T ss_pred EeC--------C-CCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHH
Confidence 442 3 356678888877454 6 6778788999887665554 889999999999999999995 8899999
Q ss_pred hc-CCEEEEeceEee
Q psy9039 232 MT-ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~~-ADGvIVGS~~~~ 245 (251)
.. |||+||||+|.+
T Consensus 206 ~~~ADgvVvGSaiv~ 220 (242)
T cd04724 206 AKYADGVIVGSALVK 220 (242)
T ss_pred HccCCEEEECHHHHH
Confidence 98 999999999864
No 12
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.90 E-value=2.5e-24 Score=189.86 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=145.0
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH--------HHHHH
Q psy9039 14 DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR--------LCAEI 85 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~--------~i~~v 85 (251)
++||+++ |+|+.+.+.+.+ +.|+++ + |+|| +|+|||||.+|||++|++..+ +++++
T Consensus 6 ~i~y~~~--G~p~~~~~~~~~--------~~l~~~-a-d~iE----lgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~v 69 (244)
T PRK13125 6 LVVYLTA--GYPNVESFKEFI--------IGLVEL-V-DILE----LGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEV 69 (244)
T ss_pred eEEEEeC--CCCCHHHHHHHH--------HHHHhh-C-CEEE----ECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 7999999 999999988877 777777 9 9997 599999999999999999998 67888
Q ss_pred HHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC--------cchhHHHHHhcCCCcchhh
Q psy9039 86 RKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ--------AGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 86 r~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d--------a~e~~~~r~~l~~~~i~i~ 157 (251)
|+.++ +|+.+|+|+|+ . ..+. .+|++.. ...|.+|++.+| ..++.++.+++|.+.+..+
T Consensus 70 r~~~~--~Pl~lM~y~n~-~-~~~~-----~~~i~~~----~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 70 RKDVS--VPIILMTYLED-Y-VDSL-----DNFLNMA----RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred hccCC--CCEEEEEecch-h-hhCH-----HHHHHHH----HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 87777 79999999997 2 4444 2565543 345688888875 2345556677776544443
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAAS-FFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+ | .|+.++++.+++.+. +-+.+....||.+ ..++. +.++++|+.. +.|+++|||| |++++++++.
T Consensus 137 ---~-----p-~T~~e~l~~~~~~~~~~l~msv~~~~g~~--~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~ 205 (244)
T PRK13125 137 ---S-----P-KFPDLLIHRLSKLSPLFIYYGLRPATGVP--LPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS 205 (244)
T ss_pred ---C-----C-CCCHHHHHHHHHhCCCEEEEEeCCCCCCC--chHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH
Confidence 2 2 245567777776665 3233444566652 34444 6788999988 5899999999 8999999764
Q ss_pred --CCEEEEeceEee
Q psy9039 234 --ADALIIGSHFKQ 245 (251)
Q Consensus 234 --ADGvIVGS~~~~ 245 (251)
|||++|||+|++
T Consensus 206 ~gaD~vvvGSai~~ 219 (244)
T PRK13125 206 AGADGVVVGTAFIE 219 (244)
T ss_pred cCCCEEEECHHHHH
Confidence 999999999975
No 13
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.22 E-value=7.5e-11 Score=107.56 Aligned_cols=140 Identities=18% Similarity=0.292 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 75 TANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 75 ~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
.+.+.+.++++|+.++ .|||+|+....+ ...+.++...+.+++... .| ...++.+.-++.+
T Consensus 47 ~~~l~~~i~~~~~~t~--~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~---------~g----~p~~~i~~lk~~g-- 109 (307)
T TIGR03151 47 PDVVRKEIRKVKELTD--KPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG---------AG----NPGKYIPRLKENG-- 109 (307)
T ss_pred HHHHHHHHHHHHHhcC--CCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc---------CC----CcHHHHHHHHHcC--
Confidence 4567888999998887 799999987432 233566666777776531 11 1123444444443
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC----CCHHHHHHHHhcCCCCEEEecCC-ChHh
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP----ADVSQLMSVKNAVDLPILIGSGV-TSDN 227 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~----~~~~~l~~vr~~~~~PV~vG~GI-~~~~ 227 (251)
++++.++ +..+.++.+...|+|.++++|...|.. ++..+++++++.+++||++.||| ++++
T Consensus 110 -~~v~~~v-------------~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 110 -VKVIPVV-------------ASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRG 175 (307)
T ss_pred -CEEEEEc-------------CCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHH
Confidence 4554321 223456777777999999999755543 35788999999999999999999 7898
Q ss_pred HHHhhc--CCEEEEeceEee
Q psy9039 228 VEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~ 245 (251)
+++++. ||||.+||.|.-
T Consensus 176 ~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHHHcCCCEeecchHHhc
Confidence 988886 999999999864
No 14
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=99.20 E-value=1.3e-10 Score=101.88 Aligned_cols=65 Identities=23% Similarity=0.544 Sum_probs=56.7
Q ss_pred hcc-ccEEEecCCCCCCCCCHHHHHHHHhcCCC-CEEEecCC-ChHhHHHhh-c-CCEEEEeceEeecCe
Q psy9039 184 FFL-SDGLIITGNATGDPADVSQLMSVKNAVDL-PILIGSGV-TSDNVEHYM-T-ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~-~D~v~VTG~~~g~~~~~~~l~~vr~~~~~-PV~vG~GI-~~~~v~~~~-~-ADGvIVGS~~~~~g~ 248 (251)
++| .+...-.|+.++.+.+.+.++++|+.++. |+++|||| +++++++++ . ||++||||+|++|+.
T Consensus 152 ~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 152 YLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK 221 (232)
T ss_pred HcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence 455 77778888888888889999999999987 99999999 689999966 4 999999999998864
No 15
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.18 E-value=2.2e-10 Score=97.67 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=92.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+- .-|.+|......+ ..+++++|+.++ .|+.+.++.|++...+..+...|++.+.+.
T Consensus 19 ~~~~~~G~-~~i~l~-~~d~~~~~~~~~~-------~~~~~~i~~~~~--~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 19 KRLEEAGA-DWIHID-VMDGHFVPNLTFG-------PPVVKALRKHTD--LPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHcCC-CEEEEe-cccCCCCCccccC-------HHHHHHHHhhCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 66778999 999863 2233554332222 246677877664 588877777764333444444555554321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA- 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~- 201 (251)
+.......+..+..++.+. .+.-.+. + .++.+++.++...+.+.+.+. +....++...
T Consensus 88 ----------~~~~~~~~~~~~~~~~~~~---~~g~~~~-----~-~~~~~~~~~~~~~~d~i~~~~--~~~g~tg~~~~ 146 (211)
T cd00429 88 ----------AEATDHLHRTIQLIKELGM---KAGVALN-----P-GTPVEVLEPYLDEVDLVLVMS--VNPGFGGQKFI 146 (211)
T ss_pred ----------ccchhhHHHHHHHHHHCCC---eEEEEec-----C-CCCHHHHHHHHhhCCEEEEEE--ECCCCCCcccC
Confidence 1011112233444444443 2211111 1 122233333322222222222 2211122221
Q ss_pred --CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 202 --DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 202 --~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+.++++|+.. ++|++++|||+++|++++.+ +||++|||+|.+.
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~ 200 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCC
Confidence 235677777665 48999999999999999995 9999999998764
No 16
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.18 E-value=4.6e-10 Score=97.03 Aligned_cols=166 Identities=18% Similarity=0.184 Sum_probs=108.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+...- .... ..+ +.++.+|+.++ +|+.+.-+..+ ...+..+...|++++...
T Consensus 38 ~~~~~~GA-~~l~v~~~~---~~~~--g~~-------~~~~~i~~~v~--iPi~~~~~i~~-~~~v~~~~~~Gad~v~l~ 101 (217)
T cd00331 38 KAYEKAGA-AAISVLTEP---KYFQ--GSL-------EDLRAVREAVS--LPVLRKDFIID-PYQIYEARAAGADAVLLI 101 (217)
T ss_pred HHHHHcCC-CEEEEEeCc---cccC--CCH-------HHHHHHHHhcC--CCEEECCeecC-HHHHHHHHHcCCCEEEEe
Confidence 66789999 999874332 2221 122 45666777666 79998877665 456777888888887742
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC-CCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA-TGDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~g~~~ 201 (251)
. ..+-.....++.++...++.+-+..+ + +.++ ++.+...++|.+++|+.. +...+
T Consensus 102 ----~----~~~~~~~~~~~~~~~~~~g~~~~v~v---------~------~~~e-~~~~~~~g~~~i~~t~~~~~~~~~ 157 (217)
T cd00331 102 ----V----AALDDEQLKELYELARELGMEVLVEV---------H------DEEE-LERALALGAKIIGINNRDLKTFEV 157 (217)
T ss_pred ----e----ccCCHHHHHHHHHHHHHcCCeEEEEE---------C------CHHH-HHHHHHcCCCEEEEeCCCccccCc
Confidence 1 00001223445555555554221111 1 2222 344444689999999754 22345
Q ss_pred CHHHHHHHHhc--CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 202 DVSQLMSVKNA--VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 202 ~~~~l~~vr~~--~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.+.+.++++. .++|++++||| +++++.+++. |||++|||+|.+..+
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~ 209 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCC
Confidence 67888888887 47899999999 6899999997 999999999987654
No 17
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.17 E-value=3e-11 Score=111.10 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEEeeCChHHH--------------HHHHHHcCccceecccccccccCCCceeec--Cc
Q psy9039 76 ANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA--------------LATAQAAGLDFIRAESFVFGHMADEGLMNA--QA 139 (251)
Q Consensus 76 aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~--------------~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~--da 139 (251)
+.+.+.++++|+.++ .|+|+|++....... ..++...+..|...-..+ .....+-++.. ..
T Consensus 48 ~~l~~~i~~~~~~t~--~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~G~p 124 (330)
T PF03060_consen 48 EQLREEIRKIRALTD--KPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVA-LEAKPDVVSFGFGLP 124 (330)
T ss_dssp HHHHHHHHHHHHH-S--S-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHH-HHS--SEEEEESSSC
T ss_pred HHHHHHHHHHHhhcc--ccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccc-cccceEEEEeecccc
Confidence 668889999999998 699999998753111 122222332311100000 00112222221 12
Q ss_pred -chhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC-----C-CHHHHHHHHhc
Q psy9039 140 -GPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-----A-DVSQLMSVKNA 212 (251)
Q Consensus 140 -~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-----~-~~~~l~~vr~~ 212 (251)
.++.+..+..| ++++. ..+..+.|+.+...|+|+++++|...|.. . ...++.++++.
T Consensus 125 ~~~~i~~l~~~g---i~v~~-------------~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~ 188 (330)
T PF03060_consen 125 PPEVIERLHAAG---IKVIP-------------QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA 188 (330)
T ss_dssp -HHHHHHHHHTT----EEEE-------------EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---Ccccc-------------ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhh
Confidence 33444444443 45542 12334456666667999999999866542 1 24778899999
Q ss_pred CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 213 VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 213 ~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+++||+++||| +.+.++.++. ||||.+||+|.-
T Consensus 189 ~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 189 VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp -SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 99999999999 7899998886 999999999863
No 18
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.12 E-value=6.7e-10 Score=94.87 Aligned_cols=169 Identities=21% Similarity=0.284 Sum_probs=88.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ |.|++- ..|-||......+ -.+++++|+.++ .|+-+-++.++....+..+...|++.+...
T Consensus 18 ~~~~~~g~-d~i~~~-~~Dg~~~~~~~~~-------~~~v~~i~~~~~--~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 18 KAVEEAGA-DWIHVD-VMDGHFVPNLTFG-------PPVLEALRKYTD--LPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred HHHHHcCC-CEEEEc-CCCCCCCCCcccC-------HHHHHHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 88899999 999863 2233443332222 245667776655 575443444443333444444444443321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC---CCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG---NATGD 199 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG---~~~g~ 199 (251)
+....+..+..+..++++...+-.+ . ..++.+++.++. .++|.+.+-+ ..+|.
T Consensus 87 ----------~~~~~~~~~~~~~~~~~g~~~~~~~---~------~~t~~e~~~~~~-----~~~d~i~~~~~~~g~tg~ 142 (210)
T TIGR01163 87 ----------PEASEHIHRLLQLIKDLGAKAGIVL---N------PATPLEFLEYVL-----PDVDLVLLMSVNPGFGGQ 142 (210)
T ss_pred ----------cCCchhHHHHHHHHHHcCCcEEEEE---C------CCCCHHHHHHHH-----hhCCEEEEEEEcCCCCcc
Confidence 0001112233344445554211111 0 112223333332 2355543311 11222
Q ss_pred ---CCCHHHHHHHHhcCC-----CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 200 ---PADVSQLMSVKNAVD-----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 200 ---~~~~~~l~~vr~~~~-----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
....+.++++|+..+ +|++++||||++|++++++ ||+++|||+|...
T Consensus 143 ~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~ 199 (210)
T TIGR01163 143 KFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGA 199 (210)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 122356667776543 7999999999999999885 9999999999754
No 19
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.11 E-value=1.4e-09 Score=94.23 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=108.0
Q ss_pred CCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE
Q psy9039 21 AESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI 99 (251)
Q Consensus 21 ~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~ 99 (251)
.||+|-++. +...+. +++.++|+ .++.+- + ...++++|+.++ +|+..++
T Consensus 14 ~~~~~~~~~~~~~~~a-------~a~~~~G~-~~~~~~-------------~-------~~~i~~i~~~~~--~Pil~~~ 63 (221)
T PRK01130 14 LPGEPLHSPEIMAAMA-------LAAVQGGA-VGIRAN-------------G-------VEDIKAIRAVVD--VPIIGII 63 (221)
T ss_pred CCCCCCCCHHHHHHHH-------HHHHHCCC-eEEEcC-------------C-------HHHHHHHHHhCC--CCEEEEE
Confidence 479998874 444442 67788999 888641 1 246678888877 7998776
Q ss_pred e---eCCh------HHHHHHHHHcCccceecccccccccCCCceeec---CcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 100 L---SGCN------KAALATAQAAGLDFIRAESFVFGHMADEGLMNA---QAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 100 ~---~N~~------~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~---da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
+ +|.+ ......+...|++|+-.. .... -.| ...++.+..++. ..+.++.++
T Consensus 64 ~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d----~~~~----~~p~~~~~~~~i~~~~~~--~~i~vi~~v------- 126 (221)
T PRK01130 64 KRDYPDSEVYITPTLKEVDALAAAGADIIALD----ATLR----PRPDGETLAELVKRIKEY--PGQLLMADC------- 126 (221)
T ss_pred ecCCCCCCceECCCHHHHHHHHHcCCCEEEEe----CCCC----CCCCCCCHHHHHHHHHhC--CCCeEEEeC-------
Confidence 6 3311 224566666777776531 0000 001 122344444442 344554211
Q ss_pred CCCCcccHHHHHHHhhhccccEEEecC-----CCC-CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 168 AITADVDITETAKAASFFLSDGLIITG-----NAT-GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+.++ ++.+...|+|.++++. ... ......+.++++++.+++||+++||| +++++.+++. |||++
T Consensus 127 -----~t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~ 200 (221)
T PRK01130 127 -----STLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVV 200 (221)
T ss_pred -----CCHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 12233 3555556899887642 111 12234688999999999999999999 7999999986 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
+||+|.+.
T Consensus 201 iGsai~~~ 208 (221)
T PRK01130 201 VGGAITRP 208 (221)
T ss_pred EchHhcCC
Confidence 99999763
No 20
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.07 E-value=2.7e-09 Score=90.72 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=106.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH-HHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK-AALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~-~~~~ia~a~g~~Fir~ 121 (251)
++|.++ + +.+++ |.||..+ .| ...++++|+..++ .|+.+.+..+++. .....+...|++|+-.
T Consensus 20 ~~l~~~-i-~~iei----g~~~~~~--~g-------~~~i~~i~~~~~~-~~i~~~~~v~~~~~~~~~~~~~aGad~i~~ 83 (202)
T cd04726 20 KKVPDG-V-DIIEA----GTPLIKS--EG-------MEAVRALREAFPD-KIIVADLKTADAGALEAEMAFKAGADIVTV 83 (202)
T ss_pred HHhhhc-C-CEEEc----CCHHHHH--hC-------HHHHHHHHHHCCC-CEEEEEEEeccccHHHHHHHHhcCCCEEEE
Confidence 778888 9 99964 8888543 33 3466777776443 6999987777632 2234456677888775
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CC---CC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GN---AT 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~---~~ 197 (251)
..... .....++.++.++.+. ++..++ + ++ .+..+..+ +...++|.+.+. +. ..
T Consensus 84 h~~~~---------~~~~~~~i~~~~~~g~---~~~v~~------~--~~-~t~~e~~~-~~~~~~d~v~~~~~~~~~~~ 141 (202)
T cd04726 84 LGAAP---------LSTIKKAVKAAKKYGK---EVQVDL------I--GV-EDPEKRAK-LLKLGVDIVILHRGIDAQAA 141 (202)
T ss_pred EeeCC---------HHHHHHHHHHHHHcCC---eEEEEE------e--CC-CCHHHHHH-HHHCCCCEEEEcCccccccc
Confidence 31110 0013456666676664 222100 0 11 12233322 334588988762 32 22
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.....+.++++++..++|+++.|||+++|+.++++ ||++++||+|.+..+
T Consensus 142 ~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d 194 (202)
T cd04726 142 GGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAAD 194 (202)
T ss_pred CCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCC
Confidence 223456888888887789999999999999999996 999999999986543
No 21
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.07 E-value=4.8e-10 Score=96.63 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=93.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ |.|.+- .-|-+|...... ....++++++.++ .|+.+.++.|++...+..+...|++.+.+.
T Consensus 23 ~~~~~~G~-~~i~l~-~~d~~~~~~~~~-------~~~~~~~i~~~~~--~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 23 KAVEAAGA-DWIHVD-VMDGHFVPNLTI-------GPPVVEAIRKVTK--LPLDVHLMVENPDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHcCC-CEEEEe-CccCCcCCCcCc-------CHHHHHHHHhcCC--CcEEEEeeeCCHHHHHHHHHHcCCCEEEEe
Confidence 78889999 999862 112234221111 2356678887666 477777777875444555555555554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEE--EecCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGL--IITGNATGDP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v--~VTG~~~g~~ 200 (251)
+.......+..+..+..+. .+.-.+. + .+..++++++...+.+.+.+.+ +.||. +-..
T Consensus 92 ----------~~~~~~~~~~~~~~~~~~~---~~g~~~~-----~-~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-~~~~ 151 (220)
T PRK05581 92 ----------VEASEHIHRLLQLIKSAGI---KAGLVLN-----P-ATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-KFIP 151 (220)
T ss_pred ----------eccchhHHHHHHHHHHcCC---EEEEEEC-----C-CCCHHHHHHHHhhCCEEEEEEECCCCCcc-cccH
Confidence 1111112223333344443 2210010 1 1233344443333333233332 22332 1111
Q ss_pred CCHHHHHHHHhcCC-----CCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVD-----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~-----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+.++++|+..+ .+|+++||||++|++++.+ +|+++|||+|.++-+
T Consensus 152 ~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d 206 (220)
T PRK05581 152 EVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPD 206 (220)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence 12356666666543 3477999999999999984 999999999987543
No 22
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.01 E-value=2e-09 Score=98.35 Aligned_cols=139 Identities=18% Similarity=0.167 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHh-CCCCccEEEEEee---CC-hHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 75 TANMTRLCAEIRKV-LPPSVPVGVQILS---GC-NKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 75 ~aa~~~~i~~vr~~-~~~~~P~Gvn~~~---N~-~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
...+.+.++++|+. ++ .|||||++. |+ ....+.++...+.+++-.. + | .| .++ +..+.
T Consensus 39 ~e~l~~~i~~~~~l~td--kPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~---~------G--~P--~~~-~~lk~- 101 (320)
T cd04743 39 GEQVKALLEETAELLGD--KPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA---G------G--RP--DQA-RALEA- 101 (320)
T ss_pred HHHHHHHHHHHHHhccC--CCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc---C------C--Ch--HHH-HHHHH-
Confidence 35578888999986 56 699999954 21 1356777777777776532 1 1 11 222 22223
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC----CHHHHHHHHhc----------CCC
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA----DVSQLMSVKNA----------VDL 215 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~----~~~~l~~vr~~----------~~~ 215 (251)
..++++. ..+....++.+...|+|+++++|...|... +..++.++.+. .++
T Consensus 102 --~Gi~v~~-------------~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~i 166 (320)
T cd04743 102 --IGISTYL-------------HVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKI 166 (320)
T ss_pred --CCCEEEE-------------EeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCc
Confidence 3556652 122234467777789999999998776542 33444444332 279
Q ss_pred CEEEecCC-ChHhHHHhhc--C--------CEEEEeceEee
Q psy9039 216 PILIGSGV-TSDNVEHYMT--A--------DALIIGSHFKQ 245 (251)
Q Consensus 216 PV~vG~GI-~~~~v~~~~~--A--------DGvIVGS~~~~ 245 (251)
||++.||| +...++.++. | +||.+||+|.-
T Consensus 167 PViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~ 207 (320)
T cd04743 167 HLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLF 207 (320)
T ss_pred cEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhc
Confidence 99999999 7888777775 7 89999999964
No 23
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.97 E-value=9.1e-09 Score=89.54 Aligned_cols=182 Identities=17% Similarity=0.168 Sum_probs=115.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.|-+..+.--.. + .....++++++.++ .|+.+..-... .+.+..+...|++.+-..
T Consensus 35 ~~~~~~g~-~~l~v~dl~~~~~g~-----~----~~~~~i~~i~~~~~--~pi~~ggGI~~-~ed~~~~~~~Ga~~vvlg 101 (230)
T TIGR00007 35 KKWEEEGA-ERIHVVDLDGAKEGG-----P----VNLPVIKKIVRETG--VPVQVGGGIRS-LEDVEKLLDLGVDRVIIG 101 (230)
T ss_pred HHHHHcCC-CEEEEEeCCccccCC-----C----CcHHHHHHHHHhcC--CCEEEeCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56788999 999874443321011 1 13456778888777 79988876665 566666666777765432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----ccCCCCCCcccHHHHHHHhhhccccEEEecCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----HSSHAITADVDITETAKAASFFLSDGLIITGN--- 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~--- 195 (251)
.. ...+...+.+..++++.+.+.+--|+... ++..- ..+.+..+.++.....|+|.+++|..
T Consensus 102 ----s~------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~g~~~ii~~~~~~~ 170 (230)
T TIGR00007 102 ----TA------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLE-KSEVSLEELAKRLEELGLEGIIYTDISRD 170 (230)
T ss_pred ----hH------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcc-cCCCCHHHHHHHHHhCCCCEEEEEeecCC
Confidence 11 11234556677777765433221111100 12110 11234455556666679999987753
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+....+.+.++++++.+++|++++||| +.+++.+++. |||+++||+|.++..
T Consensus 171 g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~~ 226 (230)
T TIGR00007 171 GTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGKI 226 (230)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCCC
Confidence 2223456889999999999999999999 7899999886 999999999987643
No 24
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.96 E-value=1.4e-08 Score=88.36 Aligned_cols=143 Identities=22% Similarity=0.381 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhCCCCccEEEEEeeCC---h-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 74 ITANMTRLCAEIRKVLPPSVPVGVQILSGC---N-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 74 i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~---~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
..+...++++++++..+ .|+++|++.|+ . ...+..+...|++++..+. + ...++.+..++.
T Consensus 37 ~~~~~~~~~~~i~~~~~--~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~---------~----~~~~~~~~~~~~ 101 (236)
T cd04730 37 TPEALRAEIRKIRALTD--KPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSF---------G----PPAEVVERLKAA 101 (236)
T ss_pred CHHHHHHHHHHHHHhcC--CCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcC---------C----CCHHHHHHHHHc
Confidence 45556678888887765 59999999985 1 2235555566667766421 1 123344444443
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC------CCHHHHHHHHhcCCCCEEEecCC
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP------ADVSQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~------~~~~~l~~vr~~~~~PV~vG~GI 223 (251)
+ +.++.. .+ +. +.++.+...++|++.+.|..++.. ...+.++++|+.+++||+++|||
T Consensus 102 ~---i~~i~~------v~------~~-~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 102 G---IKVIPT------VT------SV-EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred C---CEEEEe------CC------CH-HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 3 233211 11 11 223334335788887755432221 23578999999889999999999
Q ss_pred C-hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 224 T-SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 224 ~-~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+ ++|+.+++. |||++|||+|.+.-
T Consensus 166 ~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 166 ADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred CCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 5 699999886 99999999998653
No 25
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.94 E-value=2e-08 Score=95.43 Aligned_cols=158 Identities=18% Similarity=0.266 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCcc-EEEEEeeCChH-----HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHH
Q psy9039 73 EITANMTRLCAEIRKVLPPSVP-VGVQILSGCNK-----AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYR 146 (251)
Q Consensus 73 ~i~aa~~~~i~~vr~~~~~~~P-~Gvn~~~N~~~-----~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r 146 (251)
.+.+.+...|+++|+.++.. | ||+|++.++.. ..+.+....+.+++....+.+. .|. +.+||
T Consensus 53 l~~e~l~~~I~~ir~~~~~~-p~fGVNL~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~--------~p~---~v~~r 120 (444)
T TIGR02814 53 LPLEEVEQAIHRIQQALPGG-PAYGVNLIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQL--------TPA---LVRYR 120 (444)
T ss_pred CCHHHHHHHHHHHHHhcCCC-CceEEEecccCCCcccHHHHHHHHHHcCCCEEEeccccCC--------Ccc---hhhhh
Confidence 34566888999999987742 7 99999986521 2345555667777664322110 111 12222
Q ss_pred Hh---cCC-----Ccchhhhhh-Hhh----ccCCCCCCcc----------cHHHHHHHhhhcc-ccEEEecCCCCCCC--
Q psy9039 147 KQ---IGA-----DNVLVFTDI-KKK----HSSHAITADV----------DITETAKAASFFL-SDGLIITGNATGDP-- 200 (251)
Q Consensus 147 ~~---l~~-----~~i~i~a~v-~~k----~~~~~~~~~~----------~i~~~a~~a~~~~-~D~v~VTG~~~g~~-- 200 (251)
.. .+. ...++++.| .++ +-.|. +.. -..+.|+.++..+ +|.+++. ...|..
T Consensus 121 ~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~--p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg 197 (444)
T TIGR02814 121 AKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPA--PAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTD 197 (444)
T ss_pred hccccccccccccccceEEEecCCHHHHHHhcCCC--cHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCC
Confidence 21 000 011233221 111 00010 000 0133445555555 6999886 444433
Q ss_pred --CCHHHHHHH---HhcC--------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 201 --ADVSQLMSV---KNAV--------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 201 --~~~~~l~~v---r~~~--------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+...++..+ |+.+ ++||+++||| |++.++.++. ||||.+||.|.-
T Consensus 198 ~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fla 258 (444)
T TIGR02814 198 NRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQC 258 (444)
T ss_pred CCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHh
Confidence 234555544 4444 6899999999 8999999886 999999999853
No 26
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.94 E-value=2.3e-08 Score=94.46 Aligned_cols=153 Identities=16% Similarity=0.286 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhCC-CCccEEEEEeeCCh-----HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHH
Q psy9039 73 EITANMTRLCAEIRKVLP-PSVPVGVQILSGCN-----KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYR 146 (251)
Q Consensus 73 ~i~aa~~~~i~~vr~~~~-~~~P~Gvn~~~N~~-----~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r 146 (251)
...+.+...|+++|+... + .|||+|++.++. ...+.+....|.+++....|.+ +.|. +.++|
T Consensus 48 l~~e~l~~~I~~ir~~lt~~-~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~--------~~p~---~~~~r 115 (418)
T cd04742 48 LPLDEVEQAIERIQAALGNG-EPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQ--------LTPA---LVRYR 115 (418)
T ss_pred CCHHHHHHHHHHHHHhccCC-CCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccC--------CCcc---hhhHH
Confidence 345568889999998633 3 599999998642 2335666666667665432211 1111 22333
Q ss_pred Hh---cCCC-----cchhhhhhH-h-------------------hccCCCCCCcccHHHHHHHhhhcc-ccEEEecCCCC
Q psy9039 147 KQ---IGAD-----NVLVFTDIK-K-------------------KHSSHAITADVDITETAKAASFFL-SDGLIITGNAT 197 (251)
Q Consensus 147 ~~---l~~~-----~i~i~a~v~-~-------------------k~~~~~~~~~~~i~~~a~~a~~~~-~D~v~VTG~~~ 197 (251)
.. .+.. ..++++.|. + +.|+ .+ .+.|+.+...+ +|.++++ ..+
T Consensus 116 ~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~------it-~~eA~~A~~~g~aD~Ivvq-~EA 187 (418)
T cd04742 116 AKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK------IT-EEQAELARRVPVADDITVE-ADS 187 (418)
T ss_pred hcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC------CC-HHHHHHHHhCCCCCEEEEc-ccC
Confidence 21 0000 122333221 1 1111 12 23345555556 6999997 444
Q ss_pred CCC----CCHHH---HHHHHhcC--------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDP----ADVSQ---LMSVKNAV--------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~----~~~~~---l~~vr~~~--------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.. +...+ +.++++.. ++||+++||| |++.++.++. ||||.+||.|.-
T Consensus 188 GGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fla 253 (418)
T cd04742 188 GGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQC 253 (418)
T ss_pred CCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHh
Confidence 433 22334 44444433 6999999999 8999998886 999999999864
No 27
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.90 E-value=2.7e-08 Score=87.43 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=113.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+.+-|...-.... ++ ...+++++++.++ +|+.++.=... .....-....|++.+-.+
T Consensus 34 ~~~~~~G~-~~i~i~d~~~~~~~~----~~-----~~~~i~~i~~~~~--~pv~~~GGI~s-~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 34 KRYNEQGA-DELVFLDITASSEGR----ET-----MLDVVERVAEEVF--IPLTVGGGIRS-LEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHCCC-CEEEEEcCCcccccC----cc-----cHHHHHHHHHhCC--CCEEEeCCCCC-HHHHHHHHHcCCceEEEC
Confidence 66778899 999887666422222 11 4467788888877 79887765554 333333333455554432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhcc-----------CCCCCCcccHHHHHHHhhhccccEEE
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHS-----------SHAITADVDITETAKAASFFLSDGLI 191 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~-----------~~~~~~~~~i~~~a~~a~~~~~D~v~ 191 (251)
.+ ...+...+.+..++++.+.+.+- +..|++ ... ..+.+..+.++.+...|+|.++
T Consensus 101 ---------~~-~~~~p~~~~~i~~~~~~~~i~~~--ld~k~~~~~~~~v~~~~~~~-~~~~~~~~~~~~l~~~G~d~i~ 167 (243)
T cd04731 101 ---------SA-AVENPELIREIAKRFGSQCVVVS--IDAKRRGDGGYEVYTHGGRK-PTGLDAVEWAKEVEELGAGEIL 167 (243)
T ss_pred ---------ch-hhhChHHHHHHHHHcCCCCEEEE--EEeeecCCCceEEEEcCCce-ecCCCHHHHHHHHHHCCCCEEE
Confidence 11 11234445566666654333322 222211 111 1234555666666667999999
Q ss_pred ecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 192 ITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 192 VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
+|+.... ...+.+.++++++.+++||++.||| +++++.+++. |||++|||+|..+.
T Consensus 168 v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 168 LTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred EeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 9986432 2345788999999999999999999 6899998774 99999999997654
No 28
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.89 E-value=3.3e-08 Score=85.67 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCCccEEE-EE--e------eCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 81 LCAEIRKVLPPSVPVGV-QI--L------SGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 81 ~i~~vr~~~~~~~P~Gv-n~--~------~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
.++++|+.++ +|+.. +- + ..........+...|++|+-....... ..++ ....++.+..++.+
T Consensus 51 ~~~~i~~~~~--iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~--~p~~---~~~~~~i~~~~~~g- 122 (219)
T cd04729 51 DIRAIRARVD--LPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP--RPDG---ETLAELIKRIHEEY- 122 (219)
T ss_pred HHHHHHHhCC--CCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC--CCCC---cCHHHHHHHHHHHh-
Confidence 4566777666 79753 11 1 111123567777788888764210000 0000 02344555555554
Q ss_pred CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec--CC---CC-CCCCCHHHHHHHHhcCCCCEEEecCC-C
Q psy9039 152 DNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT--GN---AT-GDPADVSQLMSVKNAVDLPILIGSGV-T 224 (251)
Q Consensus 152 ~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT--G~---~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~ 224 (251)
++.++.. . .+.+ .+..+...|+|.+.++ |. .. ....+.+.++++|+.+++||+++||| +
T Consensus 123 -~~~iiv~------v------~t~~-ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~ 188 (219)
T cd04729 123 -NCLLMAD------I------STLE-EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINS 188 (219)
T ss_pred -CCeEEEE------C------CCHH-HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCC
Confidence 2333321 1 1222 2345555689988764 21 11 12345688999999889999999999 7
Q ss_pred hHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 225 SDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 225 ~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++++.+++. |||+++||+|.+..+
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhChHh
Confidence 999999886 999999999988654
No 29
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.87 E-value=2.7e-08 Score=86.12 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=99.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
....++|+ +.+.+ .+........ .+..+.++++.+... +|+ +.|+. ..+|.+.+++.++..
T Consensus 28 e~al~~Gv-~~vQl--------R~K~~~~~~~-~~~a~~~~~lc~~~~--v~l----iINd~---~dlA~~~~AdGVHlG 88 (211)
T COG0352 28 EAALKGGV-TAVQL--------REKDLSDEEY-LALAEKLRALCQKYG--VPL----IINDR---VDLALAVGADGVHLG 88 (211)
T ss_pred HHHHhCCC-eEEEE--------ecCCCChHHH-HHHHHHHHHHHHHhC--CeE----EecCc---HHHHHhCCCCEEEcC
Confidence 56678999 99974 3332122222 344445555555555 454 45563 677788889998853
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
-+. ......|+.++. . .++ |. +.-+++ .+..|...++|++++ |-++.
T Consensus 89 --------q~D------~~~~~ar~~~~~-~-~iI-------G~----S~h~~e-ea~~A~~~g~DYv~~GpifpT~tK~ 140 (211)
T COG0352 89 --------QDD------MPLAEARELLGP-G-LII-------GL----STHDLE-EALEAEELGADYVGLGPIFPTSTKP 140 (211)
T ss_pred --------Ccc------cchHHHHHhcCC-C-CEE-------Ee----ecCCHH-HHHHHHhcCCCEEEECCcCCCCCCC
Confidence 221 122333444443 1 121 11 112333 456666667999977 33444
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+.++ .++.++.+++...+|+++-|||+++|+.+++. |||+.|-|+|...
T Consensus 141 ~~~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 141 DAPPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred CCCccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEehhHhhcC
Confidence 4433 46888899998899999999999999999997 9999999998764
No 30
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.85 E-value=3.3e-08 Score=85.24 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=52.3
Q ss_pred cccHHHHH---HHhhhccccEEEec-CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c-CCEEEEe
Q psy9039 172 DVDITETA---KAASFFLSDGLIIT-GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T-ADALIIG 240 (251)
Q Consensus 172 ~~~i~~~a---~~a~~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~-ADGvIVG 240 (251)
+.+.++.+ ..++++|.+.+-+. ++.+....+.+.++++|+.+++|+++|||| +++++++++ . ||++|||
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 34444444 44456788877552 233344567899999999999999999999 799999997 4 9999998
No 31
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.85 E-value=3.2e-08 Score=86.10 Aligned_cols=181 Identities=17% Similarity=0.187 Sum_probs=113.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+.|-+.... |.. . .....+++++++.++ +|+-+..-.+. .+...-....|++++-.+
T Consensus 36 ~~~~~~g~-d~l~v~dl~~~-~~~----~----~~~~~~i~~i~~~~~--~pv~~~GgI~~-~e~~~~~~~~Gad~vvig 102 (234)
T cd04732 36 KKWEEAGA-KWLHVVDLDGA-KGG----E----PVNLELIEEIVKAVG--IPVQVGGGIRS-LEDIERLLDLGVSRVIIG 102 (234)
T ss_pred HHHHHcCC-CEEEEECCCcc-ccC----C----CCCHHHHHHHHHhcC--CCEEEeCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 55677899 99988544322 110 1 113456777888777 79888877776 444444456777776542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCC-C
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNA-T 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~ 197 (251)
. . ...+...+.+..++++.+.+.+--|+.. ..+.. .....+..+.++.....|+|.+++++.. .
T Consensus 103 s---------~-~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ga~~iii~~~~~~ 171 (234)
T cd04732 103 T---------A-AVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL-ETSEVSLEELAKRFEELGVKAIIYTDISRD 171 (234)
T ss_pred c---------h-HHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe-eecCCCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 1 1 1123445666677776433322111110 00100 0112344555555555789999988742 2
Q ss_pred C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 198 G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
| ...+.+.++++++.+++||+++||| +.+++.+++. |||+++||+|..+.
T Consensus 172 g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 172 GTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred CccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 2 2356789999999999999999999 6888999886 99999999997764
No 32
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.85 E-value=2.9e-08 Score=83.11 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=95.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ +.+ +. .+ ..+...++++++.+. ++++.++.|.. ..++...|++++...
T Consensus 19 ~~l~~~g~-~~i~l----r~~--~~---~~---~~~~~~~~~i~~~~~---~~~~~l~~~~~---~~~a~~~g~~~vh~~ 79 (196)
T cd00564 19 EAALKGGV-TLVQL----REK--DL---SA---RELLELARALRELCR---KYGVPLIINDR---VDLALAVGADGVHLG 79 (196)
T ss_pred HHHHhcCC-CEEEE----eCC--CC---CH---HHHHHHHHHHHHHHH---HhCCeEEEeCh---HHHHHHcCCCEEecC
Confidence 66778899 99975 222 11 11 113345566665543 56777777762 556677788877642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-----CCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-----GNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-----G~~~ 197 (251)
.. + ......++..+. ...+ |... .+.. .++.+...|+|++.+. +.+.
T Consensus 80 --------~~-----~-~~~~~~~~~~~~-~~~~--------g~~~----~t~~-~~~~~~~~g~d~i~~~~~~~~~~~~ 131 (196)
T cd00564 80 --------QD-----D-LPVAEARALLGP-DLII--------GVST----HSLE-EALRAEELGADYVGFGPVFPTPTKP 131 (196)
T ss_pred --------cc-----c-CCHHHHHHHcCC-CCEE--------EeeC----CCHH-HHHHHhhcCCCEEEECCccCCCCCC
Confidence 10 0 011222222221 1111 1111 1222 2344445689999874 3343
Q ss_pred C--CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 198 G--DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 198 g--~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+ .+...+.++++++..++||++.|||+++|+.+++. +||+++||+|.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~ 185 (196)
T cd00564 132 GAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVISAITGAD 185 (196)
T ss_pred CCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCC
Confidence 4 23457889999888899999999999999999996 99999999997654
No 33
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.83 E-value=1e-07 Score=82.35 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
++++.++|+ ..++| .++.|. -.+.++++++..++...+|.=+..+ .++...|...|++|+..
T Consensus 28 ~~a~~~gGi-~~iEv------t~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~--~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 28 VGALIEAGF-RAIEI------PLNSPD---------PFDSIAALVKALGDRALIGAGTVLS--PEQVDRLADAGGRLIVT 89 (206)
T ss_pred HHHHHHCCC-CEEEE------eCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCC--HHHHHHHHHcCCCEEEC
Confidence 377899999 99987 444441 1236777777765324788888876 46788889999999885
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~ 201 (251)
.. ...++.+++...+. .++- |. .+..+ +..|..+|+|++.+ ..+ ..-
T Consensus 90 p~--------------~~~~v~~~~~~~~~---~~~~------G~------~t~~E-~~~A~~~Gad~vk~--Fpa-~~~ 136 (206)
T PRK09140 90 PN--------------TDPEVIRRAVALGM---VVMP------GV------ATPTE-AFAALRAGAQALKL--FPA-SQL 136 (206)
T ss_pred CC--------------CCHHHHHHHHHCCC---cEEc------cc------CCHHH-HHHHHHcCCCEEEE--CCC-CCC
Confidence 21 23456777776654 2210 11 23333 45666679999987 111 123
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.++.++++++.. ++|+++-||||++|+.++++ ||++.+||++.+
T Consensus 137 G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 137 GPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcc
Confidence 478899998877 49999999999999999997 999999999875
No 34
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.83 E-value=4.1e-08 Score=85.60 Aligned_cols=63 Identities=14% Similarity=0.376 Sum_probs=51.6
Q ss_pred hccccEEEec-CCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 184 FFLSDGLIIT-GNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++|--.+-+- |+..+.+.+.+.++++|+.+ ++|+++|||| ++++++++++ ||+++|||.+.+|
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 4565544443 44456666788999999998 9999999999 7999999997 9999999999887
No 35
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.82 E-value=4.6e-08 Score=85.71 Aligned_cols=182 Identities=16% Similarity=0.224 Sum_probs=114.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+.... .. + .......++++.+.++ +|+-++.=.|+ .+....+...|++.+..+
T Consensus 39 ~~~~~~G~-~~l~i~dl~~~-~~-----~---~~~~~~~i~~i~~~~~--~~l~v~GGi~~-~~~~~~~~~~Ga~~v~iG 105 (241)
T PRK13585 39 KRWVDAGA-ETLHLVDLDGA-FE-----G---ERKNAEAIEKIIEAVG--VPVQLGGGIRS-AEDAASLLDLGVDRVILG 105 (241)
T ss_pred HHHHHcCC-CEEEEEechhh-hc-----C---CcccHHHHHHHHHHcC--CcEEEcCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 44567899 99986443321 11 1 1124556777777777 78888765565 455566667788877653
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
... ..+...+.+.++.++.+.+-+=-|+.. ..+... ..+....+.++.....|++.+.+|+....
T Consensus 106 ----s~~------~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~G~~~i~~~~~~~~ 174 (241)
T PRK13585 106 ----TAA------VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTE-KTGYTPVEAAKRFEELGAGSILFTNVDVE 174 (241)
T ss_pred ----hHH------hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcc-cCCCCHHHHHHHHHHcCCCEEEEEeecCC
Confidence 111 123344566667766433321101100 011110 11224556666666679999999885322
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+.+.++++++.+++||+++||| +++++.++.. |||++|||+|.++..
T Consensus 175 g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~ 230 (241)
T PRK13585 175 GLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKF 230 (241)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCc
Confidence 2346788999999999999999999 5899999875 999999999987653
No 36
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.82 E-value=2e-07 Score=79.28 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=101.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++.++|+ ..+++ .+..+. -..+++.+++..+. +-.|.....+ ......|.+.|++|+...
T Consensus 31 ~~~~~~Gv-~~vql------r~k~~~---------~~e~~~~~~~~~~~-~~~g~gtvl~--~d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 31 EAVAAGGM-RLIEI------TWNSDQ---------PAELISQLREKLPE-CIIGTGTILT--LEDLEEAIAAGAQFCFTP 91 (187)
T ss_pred HHHHHCCC-CEEEE------eCCCCC---------HHHHHHHHHHhCCC-cEEeEEEEEc--HHHHHHHHHcCCCEEECC
Confidence 67789999 99986 344331 12344445544442 2455555554 367888899999998642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
. ...+..++++..+.+ .++ |. -+..+ +..|...|+|++.+ ..|.....
T Consensus 92 ~--------------~~~~~~~~~~~~~~~--~i~-------G~------~t~~e-~~~A~~~Gadyv~~--Fpt~~~~G 139 (187)
T PRK07455 92 H--------------VDPELIEAAVAQDIP--IIP-------GA------LTPTE-IVTAWQAGASCVKV--FPVQAVGG 139 (187)
T ss_pred C--------------CCHHHHHHHHHcCCC--EEc-------Cc------CCHHH-HHHHHHCCCCEEEE--CcCCcccC
Confidence 0 123466677776542 122 11 23344 34555579999988 33332335
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++++++.. ++|+++-||||++|+.++++ |+|+.|||++..
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCCCeEEEEehhccc
Confidence 78899999888 69999999999999999997 999999999865
No 37
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.80 E-value=8.4e-08 Score=86.88 Aligned_cols=76 Identities=29% Similarity=0.395 Sum_probs=58.4
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------------------CC-C-----CHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------------------DP-A-----DVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------------------~~-~-----~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
...++++.++..|+|++.+++.-.+ .. + .++.+.++++.+++||+..||| |++++
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da 249 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDA 249 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHH
Confidence 4556666666789999998743111 01 0 1356788999999999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeecCee
Q psy9039 229 EHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
.+++. ||+|.+|+++..++.+
T Consensus 250 ~~~l~~GAd~V~igr~~l~~p~~ 272 (300)
T TIGR01037 250 LEFLMAGASAVQVGTAVYYRGFA 272 (300)
T ss_pred HHHHHcCCCceeecHHHhcCchH
Confidence 99985 9999999999998843
No 38
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.79 E-value=1.5e-07 Score=80.53 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=103.4
Q ss_pred hCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE-eeCChHHHHHHHHHcCccce
Q psy9039 41 VLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI-LSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 41 ~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~-~~N~~~~~~~ia~a~g~~Fi 119 (251)
-++.| ++|+ |.|++ +.|+..+ .|+ ..++++|+..++ ..+++-+ +.|+.......+...|++|+
T Consensus 17 ~~~~l-~~~v-~~iev----~~~l~~~--~g~-------~~i~~l~~~~~~-~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 17 LAEKV-ADYV-DIIEI----GTPLIKN--EGI-------EAVKEMKEAFPD-RKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred HHHHc-ccCe-eEEEe----CCHHHHH--hCH-------HHHHHHHHHCCC-CEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 33777 8999 99975 6666554 232 456677766432 3555444 23543334566677899998
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CCC--
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GNA-- 196 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~~-- 196 (251)
-...+.. .....++.++.+++|. +++.++ + ++ .+..+.++.+...++|.+.+. |..
T Consensus 81 ~vh~~~~---------~~~~~~~i~~~~~~g~---~~~~~~------~--~~-~t~~~~~~~~~~~g~d~v~~~pg~~~~ 139 (206)
T TIGR03128 81 TVLGVAD---------DATIKGAVKAAKKHGK---EVQVDL------I--NV-KDKVKRAKELKELGADYIGVHTGLDEQ 139 (206)
T ss_pred EEeccCC---------HHHHHHHHHHHHHcCC---EEEEEe------c--CC-CChHHHHHHHHHcCCCEEEEcCCcCcc
Confidence 7542111 0123456777777764 332111 0 11 223344455554599998774 221
Q ss_pred CCCCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 197 TGDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+-.+...+.++++++..+ .++.+-|||+++|+.++++ ||++++||+|.+.
T Consensus 140 ~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 140 AKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred cCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 111234577888887664 5666689999999999996 9999999999864
No 39
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.79 E-value=1.3e-07 Score=82.07 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=109.8
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--CccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP--SVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~--~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
+-+++|.++|+ ..+|| +|+.|. -...++++++.+++ ..-+|.=+..+ ..+..-|...|++
T Consensus 29 ~~~~al~~~Gi-~~iEi------t~~~~~---------a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA~ 90 (213)
T PRK06552 29 KISLAVIKGGI-KAIEV------TYTNPF---------ASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGAQ 90 (213)
T ss_pred HHHHHHHHCCC-CEEEE------ECCCcc---------HHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCCC
Confidence 33488999999 99987 666652 33466777776631 14789988886 4677888889999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
|+=... -..++.+++++.+. .++ | ...+.. .+..|..+|+|.+.+= -
T Consensus 91 FivsP~--------------~~~~v~~~~~~~~i---~~i---------P---G~~T~~-E~~~A~~~Gad~vklF--P- 137 (213)
T PRK06552 91 FIVSPS--------------FNRETAKICNLYQI---PYL---------P---GCMTVT-EIVTALEAGSEIVKLF--P- 137 (213)
T ss_pred EEECCC--------------CCHHHHHHHHHcCC---CEE---------C---CcCCHH-HHHHHHHcCCCEEEEC--C-
Confidence 966320 13457777777654 222 1 122333 3456666899999881 1
Q ss_pred CCCCCHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPADVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
......+.++.++...+ +|++.-|||+.+|+.++++ ++++.+||++...
T Consensus 138 a~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 138 GSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred cccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCc
Confidence 11223678998888874 9999999999999999997 9999999998653
No 40
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=92.47 Aligned_cols=72 Identities=22% Similarity=0.366 Sum_probs=60.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC--------CHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA--------DVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~--------~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
...+.|+.++..|+|++++.|...|... ...++.++++.++ +||++.||| +.+.+..++. ||||.+||
T Consensus 135 ~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT 214 (336)
T COG2070 135 ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGT 214 (336)
T ss_pred CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhh
Confidence 4456677777789999999998665432 2578999999999 899999999 8999988886 99999999
Q ss_pred eEee
Q psy9039 242 HFKQ 245 (251)
Q Consensus 242 ~~~~ 245 (251)
+|.-
T Consensus 215 ~Fl~ 218 (336)
T COG2070 215 RFLA 218 (336)
T ss_pred hhhc
Confidence 9974
No 41
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.76 E-value=2.1e-07 Score=79.09 Aligned_cols=152 Identities=15% Similarity=0.187 Sum_probs=105.9
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
++++.++|+ +.|++ .++.+. ....++.+++..++ ..+|.-...+ ...+..+...|++|+..
T Consensus 22 ~~~l~~~G~-~~vev------~~~~~~---------~~~~i~~l~~~~~~-~~iGag~v~~--~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 22 AEALIEGGI-RAIEI------TLRTPG---------ALEAIRALRKEFPE-ALIGAGTVLT--PEQADAAIAAGAQFIVS 82 (190)
T ss_pred HHHHHHCCC-CEEEE------eCCChh---------HHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEEEc
Confidence 367889999 99986 344331 23377788887764 4778766653 35678888899999874
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPA 201 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~ 201 (251)
. + ...++.+++++++. .++- |. .+. +.+..|...|+|++.+.-.. ..
T Consensus 83 p----------~----~~~~~~~~~~~~~~---~~i~------gv------~t~-~e~~~A~~~Gad~i~~~p~~---~~ 129 (190)
T cd00452 83 P----------G----LDPEVVKAANRAGI---PLLP------GV------ATP-TEIMQALELGADIVKLFPAE---AV 129 (190)
T ss_pred C----------C----CCHHHHHHHHHcCC---cEEC------Cc------CCH-HHHHHHHHCCCCEEEEcCCc---cc
Confidence 2 0 12457777777754 2221 11 133 34566666799999985321 12
Q ss_pred CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+.++.+++.. ++|+++-||||++|+.++++ +|++.+||.+.+
T Consensus 130 g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 130 GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred CHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 567888888776 59999999999999999997 999999999864
No 42
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.76 E-value=1.4e-07 Score=78.13 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=95.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH----HHHHcCccc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA----TAQAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~----ia~a~g~~F 118 (251)
+.+.++|+ |.+.+.+....|..... .++ +.+..+++..+ .|++++++.|++..... .+...|++.
T Consensus 19 ~~~~~~G~-~~v~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~ 87 (200)
T cd04722 19 KAAAEAGA-DAIIVGTRSSDPEEAET-DDK-------EVLKEVAAETD--LPLGVQLAINDAAAAVDIAAAAARAAGADG 87 (200)
T ss_pred HHHHcCCC-CEEEEeeEEECcccCCC-ccc-------cHHHHHHhhcC--CcEEEEEccCCchhhhhHHHHHHHHcCCCE
Confidence 66778999 99998776655554431 121 44556666666 79999999987433332 445556666
Q ss_pred eecccccccccCCCceeecC-cchh-HHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQ-AGPL-LRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~d-a~e~-~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+..+...... +. ..+. ...++.+ .++.+...+... .... .. . ....++|.+.+++..
T Consensus 88 v~l~~~~~~~--------~~~~~~~~~~i~~~~--~~~~v~~~~~~~------~~~~---~~-~-~~~~g~d~i~~~~~~ 146 (200)
T cd04722 88 VEIHGAVGYL--------AREDLELIRELREAV--PDVKVVVKLSPT------GELA---AA-A-AEEAGVDEVGLGNGG 146 (200)
T ss_pred EEEeccCCcH--------HHHHHHHHHHHHHhc--CCceEEEEECCC------Cccc---hh-h-HHHcCCCEEEEcCCc
Confidence 6553111100 00 1112 2233333 133443222211 1111 11 0 233589999886643
Q ss_pred CCCC---CC---HHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEec
Q psy9039 197 TGDP---AD---VSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 197 ~g~~---~~---~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS 241 (251)
.+.. .. ...++++++..++||+++|||+ ++++.+++. ||+++|||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 147 GGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 2221 11 2446667777899999999995 599999986 99999997
No 43
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.76 E-value=1.7e-07 Score=81.73 Aligned_cols=178 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+..+.=... | ....+++++++.++ .|+-+..=... .....-....|++++-.+
T Consensus 37 ~~~~~~g~-~~i~i~dl~~~~~~~----~-----~n~~~~~~i~~~~~--~pv~~~ggi~~-~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 37 RIYNAKGA-DELIVLDIDASKRGR----E-----PLFELISNLAEECF--MPLTVGGGIRS-LEDAKKLLSLGADKVSIN 103 (232)
T ss_pred HHHHHcCC-CEEEEEeCCCcccCC----C-----CCHHHHHHHHHhCC--CCEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 66778999 999875554321111 1 13456677777777 68766532222 223222334455555432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----------ccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----------HSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----------~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. . ...+.+.+.+..++++...+.+--|+... .+.. ........+.++.....|+|.+++
T Consensus 104 ~---------~-~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 104 T---------A-ALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR-RATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred h---------h-HhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc-ccCCCCHHHHHHHHHHcCCCEEEE
Confidence 1 0 11233445556666654322211122110 0000 011234456666666679999999
Q ss_pred cCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH-hhc--CCEEEEeceEe
Q psy9039 193 TGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH-YMT--ADALIIGSHFK 244 (251)
Q Consensus 193 TG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~-~~~--ADGvIVGS~~~ 244 (251)
|+... ....+.+.++++++.+++||+++||| +.+++.+ +.. |||+++||+|.
T Consensus 173 ~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 173 NSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred eCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 99422 23346789999999999999999999 6899998 544 99999999983
No 44
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.76 E-value=2.3e-07 Score=80.73 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.....|..+++.|.-.+-.-++ |...+.+.++++|+.+ ++|+++|||| |+++++++++ ||+++|||++.++
T Consensus 136 ~~~ayA~aae~~g~~ivyLe~S--G~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 136 DAAAYALAAEYLGMPIVYLEYS--GAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHHHHHHHHcCCeEEEeCCC--CCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 3444455566555555555533 3346788999999998 9999999999 7999999997 9999999999886
No 45
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.75 E-value=9.9e-08 Score=85.15 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=112.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-+..+-. |... ....++++|+.++ +|+...=|..+ .++...+...|++.+-..
T Consensus 77 ~~~~~~GA-~aisvlte~~--~f~g----------~~~~l~~v~~~v~--iPvl~kdfi~~-~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 77 KAYEAGGA-ACLSVLTDER--FFQG----------SLEYLRAARAAVS--LPVLRKDFIID-PYQIYEARAAGADAILLI 140 (260)
T ss_pred HHHHhCCC-eEEEEecccc--cCCC----------CHHHHHHHHHhcC--CCEEeeeecCC-HHHHHHHHHcCCCEEEEE
Confidence 66788999 9998743332 2221 2456677888888 79888777777 568888899999998863
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~ 201 (251)
. ..+. .....++.++.+.+|. ..+.+++ +.++ ++.+...|+|.+++++.... ..+
T Consensus 141 ~---~~l~-----~~~l~~li~~a~~lGl---~~lvevh------------~~~E-~~~A~~~gadiIgin~rdl~~~~~ 196 (260)
T PRK00278 141 V---AALD-----DEQLKELLDYAHSLGL---DVLVEVH------------DEEE-LERALKLGAPLIGINNRNLKTFEV 196 (260)
T ss_pred e---ccCC-----HHHHHHHHHHHHHcCC---eEEEEeC------------CHHH-HHHHHHcCCCEEEECCCCcccccC
Confidence 1 0011 1246777888888875 2222222 2233 34455569999999864322 244
Q ss_pred CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...++.+.. +.|++..||| |++++.+++. |||++|||+|.+.-
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~ 247 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRAD 247 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCC
Confidence 566777776654 3699999999 7999999996 99999999998754
No 46
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.75 E-value=4.8e-08 Score=83.72 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=98.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHH-HHHHHHHHHhCCCCccEEEEEeeCChH-HHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANM-TRLCAEIRKVLPPSVPVGVQILSGCNK-AALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~-~~~i~~vr~~~~~~~P~Gvn~~~N~~~-~~~~ia~a~g~~Fir 120 (251)
+...++|+ |.+-+ =|... .|-- . ...++++++..+.. +..+-++.|+.. .-..++...+.++++
T Consensus 13 ~~a~~~Gv-d~ig~------i~~~~---s~R~---v~~~~a~~l~~~~~~~-~~~V~v~vn~~~~~i~~ia~~~~~d~Vq 78 (203)
T cd00405 13 LAAAEAGA-DAIGF------IFAPK---SPRY---VSPEQAREIVAALPPF-VKRVGVFVNEDLEEILEIAEELGLDVVQ 78 (203)
T ss_pred HHHHHcCC-CEEEE------ecCCC---CCCC---CCHHHHHHHHHhCCCC-CcEEEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 66778999 99954 33221 1111 2 33445566555521 245666778743 235677778889998
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-C---
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-A--- 196 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~--- 196 (251)
.+ + .+ +...+...|+.++..-++.+. .. . ....+ ...+...++|++.+-.. .
T Consensus 79 lh---g----~e-----~~~~~~~l~~~~~~~~i~~i~-------~~---~-~~~~~-~~~~~~~~aD~il~dt~~~~~~ 134 (203)
T cd00405 79 LH---G----DE-----SPEYCAQLRARLGLPVIKAIR-------VK---D-EEDLE-KAAAYAGEVDAILLDSKSGGGG 134 (203)
T ss_pred EC---C----CC-----CHHHHHHHHhhcCCcEEEEEe-------cC---C-hhhHH-HhhhccccCCEEEEcCCCCCCC
Confidence 64 1 10 123344555555543333331 11 1 11111 11222357888866332 2
Q ss_pred --CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeec-Ce
Q psy9039 197 --TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQG-GR 248 (251)
Q Consensus 197 --~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~-g~ 248 (251)
+|...+++.+++++ .++|++++||||++|+.++++ ++|+.|+|.|... |.
T Consensus 135 Gg~g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 135 GGTGKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred CCCcceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 23344677777766 579999999999999999996 7999999999976 64
No 47
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.74 E-value=1.7e-07 Score=81.61 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=110.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+.+..+. +.. .+ .....++++++.++ .|+-+..-..+ .+...-+...|++.+-..
T Consensus 37 ~~~~~~g~-~~i~v~dld~~-~~g----~~----~~~~~i~~i~~~~~--~pv~~~GGI~~-~ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 37 KAWEDQGA-KWLHLVDLDGA-KAG----KP----VNLELIEAIVKAVD--IPVQVGGGIRS-LETVEALLDAGVSRVIIG 103 (233)
T ss_pred HHHHHcCC-CEEEEEeCCcc-ccC----Cc----ccHHHHHHHHHHCC--CCEEEcCCcCC-HHHHHHHHHcCCCEEEEC
Confidence 56778999 99998766433 111 00 13567778888777 78777655555 455555556677665542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh----hccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----KHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
... ..+...+.+..++++. .+.+--|+.. .++.. ..+..+..+.++.....|++.+++|+....
T Consensus 104 ----~~~------l~~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~-~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~ 171 (233)
T PRK00748 104 ----TAA------VKNPELVKEACKKFPG-KIVVGLDARDGKVATDGWL-ETSGVTAEDLAKRFEDAGVKAIIYTDISRD 171 (233)
T ss_pred ----chH------HhCHHHHHHHHHHhCC-CceeeeeccCCEEEEccCe-ecCCCCHHHHHHHHHhcCCCEEEEeeecCc
Confidence 111 1122234444444432 2211102110 02211 012345566666666679999999865322
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
...+.+.++++++.+++|++++||| +.+++.++++ ||||++||+|..+.
T Consensus 172 g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 172 GTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred CCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence 2356899999999999999999999 7899999885 99999999997764
No 48
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.73 E-value=1.9e-07 Score=82.71 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.|-+....-.. . ......++++++.+. +|+-+..=... .....-....|++.+-.+
T Consensus 37 ~~~~~~G~-~~i~i~dl~~~~~~-----~----~~~~~~i~~i~~~~~--ipv~~~GGi~s-~~~~~~~l~~Ga~~Viig 103 (253)
T PRK02083 37 KRYNEEGA-DELVFLDITASSEG-----R----DTMLDVVERVAEQVF--IPLTVGGGIRS-VEDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHcCC-CEEEEEeCCccccc-----C----cchHHHHHHHHHhCC--CCEEeeCCCCC-HHHHHHHHHcCCCEEEEC
Confidence 55668899 99988655431111 1 124567788888877 78777754433 333333344566655432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh---------hccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK---------KHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~---------k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
. + ...+...+.+..+.++.+.+.+--|+.. +........+.+..+.++.+...|+|.+++|
T Consensus 104 t---------~-~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~ 173 (253)
T PRK02083 104 S---------A-AVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT 173 (253)
T ss_pred h---------h-HhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEc
Confidence 1 1 1123455667777776444433223221 1000001123355566666666799999997
Q ss_pred CCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 194 GNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
+-. +....+++.++++++.+++||+++||| +.+++.++++ |||+++||+|-.+
T Consensus 174 ~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 174 SMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 743 223346889999999999999999999 6899988773 9999999998654
No 49
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.72 E-value=4.1e-07 Score=77.74 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=53.1
Q ss_pred HHHhhhccccEEEecC-----CCCCCCC--CHHHHHHHHhcCC-CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 179 AKAASFFLSDGLIITG-----NATGDPA--DVSQLMSVKNAVD-LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG-----~~~g~~~--~~~~l~~vr~~~~-~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+..+...|+|+++++. .+.+..+ .++.++++++..+ +||++.|||+++|+.+++. |||+++||+|.+.
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcC
Confidence 3455556899998743 3333222 2688999988876 9999999999999999986 9999999998764
No 50
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.70 E-value=3.2e-07 Score=81.39 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=113.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-|.....-. ++ ....+++++++.++ +|+-+..=... ...+.-....|++.+-++
T Consensus 37 ~~~~~~G~-~~l~v~Dl~~~~~~-----~~----~n~~~i~~i~~~~~--~pv~~~GGi~s-~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 37 QRYDEEGA-DELVFLDITASSEG-----RT----TMIDVVERTAETVF--IPLTVGGGIKS-IEDVDKLLRAGADKVSIN 103 (254)
T ss_pred HHHHHcCC-CEEEEEcCCccccc-----Ch----hhHHHHHHHHHhcC--CCEEEECCCCC-HHHHHHHHHcCCCEEEEC
Confidence 56678999 99998776644211 11 24567788888877 78777654433 333333344566665432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh------------ccCCCCCCcccHHHHHHHhhhccccEE
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK------------HSSHAITADVDITETAKAASFFLSDGL 190 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k------------~~~~~~~~~~~i~~~a~~a~~~~~D~v 190 (251)
.. ...+...+.+..++++.+.+.+--|+... ++.. ........+.++.....|+|.+
T Consensus 104 ----t~------~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~-~~~~~~~~~~~~~l~~~G~~~i 172 (254)
T TIGR00735 104 ----TA------AVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGR-ESTGLDAVEWAKEVEKLGAGEI 172 (254)
T ss_pred ----hh------HhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCc-ccCCCCHHHHHHHHHHcCCCEE
Confidence 11 11234455566677764444332222111 0100 1123455566666666799999
Q ss_pred EecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeec
Q psy9039 191 IITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 191 ~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~ 246 (251)
++|+.... ...+.+.++++++.+++||++.||| +++++.+++. +||+++||+|-.+
T Consensus 173 ivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 173 LLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred EEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 99886442 2346788999999999999999999 6899998885 9999999998554
No 51
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.65 E-value=4.3e-07 Score=81.65 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=87.2
Q ss_pred ccEEEEEeeCChH---HHHHHHHHcCccceecccccccccCCCceeecCcch---hH-HHHHhcCCCcchhhhhhHhhcc
Q psy9039 93 VPVGVQILSGCNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGP---LL-RYRKQIGADNVLVFTDIKKKHS 165 (251)
Q Consensus 93 ~P~Gvn~~~N~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e---~~-~~r~~l~~~~i~i~a~v~~k~~ 165 (251)
.|+++++..++.. .....+...|++++..+..|-......++. -+... ++ ..|+.. ++.++. |-+
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~-~~~~~~~eiv~~vr~~~---~~pv~v----Kl~ 170 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLG-QDPEAVANLLKAVKAAV---DIPLLV----KLS 170 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccc-cCHHHHHHHHHHHHHcc---CCCEEE----EeC
Confidence 6999999887531 223333345778888764333211111111 12122 22 222222 122221 221
Q ss_pred CCCCCCcccHHHHHHHhhhccccEEEecCCCCCC------------------C------CCHHHHHHHHhcC--CCCEEE
Q psy9039 166 SHAITADVDITETAKAASFFLSDGLIITGNATGD------------------P------ADVSQLMSVKNAV--DLPILI 219 (251)
Q Consensus 166 ~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~------------------~------~~~~~l~~vr~~~--~~PV~v 219 (251)
.. .+.+.+.++++.+...|+|++.+++...+. . ..++.++++|+.+ ++||+.
T Consensus 171 ~~--~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia 248 (289)
T cd02810 171 PY--FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIG 248 (289)
T ss_pred CC--CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 11 222345666676666799999998642110 0 0245688899888 899999
Q ss_pred ecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 220 GSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 220 G~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.||| |++++.+++. ||+|.+||++..+|-
T Consensus 249 ~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP 280 (289)
T cd02810 249 VGGIDSGEDVLEMLMAGASAVQVATALMWDGP 280 (289)
T ss_pred ECCCCCHHHHHHHHHcCccHheEcHHHHhcCc
Confidence 9999 6899999996 999999999998864
No 52
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.64 E-value=9.3e-07 Score=79.85 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=88.0
Q ss_pred HHHHHHhCCCCccEEEEEeeCChH---HHHHHHHHcCccceecccccccccCCCceeecCcc---hhHHHHHhcCCCcch
Q psy9039 82 CAEIRKVLPPSVPVGVQILSGCNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAG---PLLRYRKQIGADNVL 155 (251)
Q Consensus 82 i~~vr~~~~~~~P~Gvn~~~N~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~---e~~~~r~~l~~~~i~ 155 (251)
+++.++..+ .|+++++.-+... .....+...|++++..+..|-..-.-..-+..+.+ ++++.-++.- ++.
T Consensus 81 ~~~~~~~~~--~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~P 156 (296)
T cd04740 81 LLPWLREFG--TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVP 156 (296)
T ss_pred HHHHhhcCC--CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCC
Confidence 333333344 6999999877631 12223334577888887443321110011111212 2222222210 223
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-----------------CC---C----CCHHHHHHHHh
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-----------------GD---P----ADVSQLMSVKN 211 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-----------------g~---~----~~~~~l~~vr~ 211 (251)
++. |-+ + ....+.++++.+...|+|++.+++.-. +. + ..++.++++|+
T Consensus 157 v~v----Kl~-~---~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~ 228 (296)
T cd04740 157 VIV----KLT-P---NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYK 228 (296)
T ss_pred EEE----EeC-C---CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHH
Confidence 322 211 1 112356677777778999987753211 10 0 02367889999
Q ss_pred cCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 212 AVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 212 ~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+++||+..||| +++++.+++. ||+|.+||++..|
T Consensus 229 ~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 229 AVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred hcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC
Confidence 899999999999 7999999996 9999999999885
No 53
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.60 E-value=2.6e-07 Score=80.73 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=102.5
Q ss_pred hCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcccee
Q psy9039 41 VLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 41 ~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+++.+.++|+ +.+.+ ..-|.-|.....-|| ..++++|+.+. .|+.+-++.|++......+...|++.+-
T Consensus 25 ~l~~~~~~g~-~~ihl-d~~d~~f~~~~~~g~-------~~~~~l~~~~~--~~~~vhlmv~~p~d~~~~~~~~gad~v~ 93 (229)
T PLN02334 25 EAKRVLDAGA-DWLHV-DVMDGHFVPNLTIGP-------PVVKALRKHTD--APLDCHLMVTNPEDYVPDFAKAGASIFT 93 (229)
T ss_pred HHHHHHHcCC-CEEEE-ecccCCcCCccccCH-------HHHHHHHhcCC--CcEEEEeccCCHHHHHHHHHHcCCCEEE
Confidence 3467788999 99987 333333444332233 45667777766 6889999998765667777788888773
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCC---C
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLIITGN---A 196 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~---~ 196 (251)
.. .+. . . .....+..+..+..+. .+-+. .+. .+..+..+..... ++|.+++-.. .
T Consensus 94 vH--~~q-~-~----~d~~~~~~~~i~~~g~-~iGls--------~~~----~t~~~~~~~~~~~~~~Dyi~~~~v~pg~ 152 (229)
T PLN02334 94 FH--IEQ-A-S----TIHLHRLIQQIKSAGM-KAGVV--------LNP----GTPVEAVEPVVEKGLVDMVLVMSVEPGF 152 (229)
T ss_pred Ee--ecc-c-c----chhHHHHHHHHHHCCC-eEEEE--------ECC----CCCHHHHHHHHhccCCCEEEEEEEecCC
Confidence 22 110 0 0 0112233444444443 11111 110 0112222222222 2888755221 1
Q ss_pred CCC--CC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 197 TGD--PA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 197 ~g~--~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
++. .+ ..+.++++|+.. +.|+.+-||||++|+.++.+ ||+++|||++.+.
T Consensus 153 ~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 153 GGQSFIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred CccccCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 222 11 246788888774 68999999999999999996 9999999998753
No 54
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.59 E-value=5.8e-07 Score=78.43 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCCcCCC-CccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVPVG-VQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~G-v~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.+.++| + +.|++ ..+.. ... ....++++++.... ..|+.++.|+. ..+|.+.|++.++.
T Consensus 33 ~~al~~G~v-~~vQl--------R~K~l-~~~---~~~~~a~~l~~l~~---~~gv~liINd~---~dlA~~~~adGVHL 93 (221)
T PRK06512 33 RAALQGGDV-ASVIL--------PQYGL-DEA---TFQKQAEKLVPVIQ---EAGAAALIAGD---SRIAGRVKADGLHI 93 (221)
T ss_pred HHHHcCCCc-cEEEE--------eCCCC-CHH---HHHHHHHHHHHHHH---HhCCEEEEeCH---HHHHHHhCCCEEEE
Confidence 5567889 9 99974 22211 222 23344444444332 33455556663 67777777777664
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC----CCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG----NAT 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG----~~~ 197 (251)
. .+ ...+...|+.++.. +++. .. ..-+. +.+..|...|+|++++.- +++
T Consensus 94 g--------~~------d~~~~~~r~~~~~~--~iiG-------~s---~~~s~-~~a~~A~~~gaDYv~~Gpv~t~tK~ 146 (221)
T PRK06512 94 E--------GN------LAALAEAIEKHAPK--MIVG-------FG---NLRDR-HGAMEIGELRPDYLFFGKLGADNKP 146 (221)
T ss_pred C--------cc------ccCHHHHHHhcCCC--CEEE-------ec---CCCCH-HHHHHhhhcCCCEEEECCCCCCCCC
Confidence 2 11 12355667777632 2331 10 00122 223445456899987733 333
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+.++ .++.++++++.+++||++-|||+++|+.++.. |||+.|-|+|.+
T Consensus 147 ~~~p~gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 147 EAHPRNLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred CCCCCChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhC
Confidence 3222 46788888888899999999999999999996 999999999875
No 55
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.58 E-value=2.7e-07 Score=82.54 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=104.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..+++|+ =++++ .--+|.. +-..|-+-.+.-.+-|+++|+.++ +|+-=-.=. ..........+.|++.+. +
T Consensus 22 ~~ae~aga-~~v~~--~~~~~~~-~~~~~~v~R~~~~~~I~~Ik~~V~--iPVIGi~K~-~~~~Ea~~L~eaGvDiID-a 93 (283)
T cd04727 22 RIAEEAGA-VAVMA--LERVPAD-IRAAGGVARMADPKMIKEIMDAVS--IPVMAKVRI-GHFVEAQILEALGVDMID-E 93 (283)
T ss_pred HHHHHcCc-eEEee--eccCchh-hhhcCCeeecCCHHHHHHHHHhCC--CCeEEeeeh-hHHHHHHHHHHcCCCEEe-c
Confidence 66788999 88875 2233443 333455555555678999999988 784322211 112223333456677763 1
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-CC----
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-AT---- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~---- 197 (251)
. ....|....+...++++ ++.+++|+ .++ +.+..+...|+|.+..|+. -|
T Consensus 94 T---------~r~rP~~~~~~~iK~~~---~~l~MAD~------------stl-eEal~a~~~Gad~I~TTl~gyT~~~~ 148 (283)
T cd04727 94 S---------EVLTPADEEHHIDKHKF---KVPFVCGA------------RNL-GEALRRISEGAAMIRTKGEAGTGNVV 148 (283)
T ss_pred c---------CCCCcHHHHHHHHHHHc---CCcEEccC------------CCH-HHHHHHHHCCCCEEEecCCCCCCcHH
Confidence 1 01112111222333333 23333322 233 3456666679999999982 11
Q ss_pred -----------------------------CCCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 198 -----------------------------GDPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 198 -----------------------------g~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
...++++.|+++++..++||+ +-||| |++|+.+++. |||+.|||+|
T Consensus 149 ~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI 228 (283)
T cd04727 149 EAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGI 228 (283)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHh
Confidence 123567899999999899997 99999 9999999997 9999999999
Q ss_pred ee
Q psy9039 244 KQ 245 (251)
Q Consensus 244 ~~ 245 (251)
.+
T Consensus 229 ~~ 230 (283)
T cd04727 229 FK 230 (283)
T ss_pred hc
Confidence 75
No 56
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.57 E-value=1.1e-06 Score=76.62 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=105.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+ ++++|+. ++ .|+=+-++...|..-+..-...|++
T Consensus 15 ~~~i~~l~~~g~-~~lH~DvmDG-~Fvpn~tfg~~~-------i~~i~~~~~~--~~~dvHLMv~~p~~~i~~~~~~gad 83 (220)
T PRK08883 15 GEDVEKVLAAGA-DVVHFDVMDN-HYVPNLTFGAPI-------CKALRDYGIT--APIDVHLMVKPVDRIIPDFAKAGAS 83 (220)
T ss_pred HHHHHHHHHcCC-CEEEEecccC-cccCccccCHHH-------HHHHHHhCCC--CCEEEEeccCCHHHHHHHHHHhCCC
Confidence 445577888999 9987532222 255555556655 4566665 45 6888888877654444444456777
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+-..... ..+..+.+++-++.|.. .-+. ++ | .|+-+.+..+. ..+|.+.+-+...
T Consensus 84 ~i~~H~Ea----------~~~~~~~l~~ik~~g~k-~Gla--ln-----P-~Tp~~~i~~~l-----~~~D~vlvMtV~P 139 (220)
T PRK08883 84 MITFHVEA----------SEHVDRTLQLIKEHGCQ-AGVV--LN-----P-ATPLHHLEYIM-----DKVDLILLMSVNP 139 (220)
T ss_pred EEEEcccC----------cccHHHHHHHHHHcCCc-EEEE--eC-----C-CCCHHHHHHHH-----HhCCeEEEEEecC
Confidence 76654211 12345666777777752 1111 11 1 12222222221 2467776644333
Q ss_pred CC------CCCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GD------PADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~------~~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|. +...++++++|+.. ++|+.+.|||+++|+.++.+ ||++++||++.+.
T Consensus 140 GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~ 201 (220)
T PRK08883 140 GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQ 201 (220)
T ss_pred CCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 32 23457788887765 38999999999999999996 9999999998653
No 57
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.55 E-value=4e-07 Score=81.47 Aligned_cols=172 Identities=22% Similarity=0.264 Sum_probs=108.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..+++|+ -+|+. .--+|..- -+.|-+...+--+.|+++++.++ +|+---+=. .......+..+.|++++. +
T Consensus 24 ~iae~aga-~avm~--le~~p~d~-r~~ggv~R~~~p~~I~~I~~~V~--iPVig~~ki-gh~~Ea~~L~~~GvDiID-e 95 (287)
T TIGR00343 24 KIAEEAGA-VAVMA--LERVPADI-RASGGVARMSDPKMIKEIMDAVS--IPVMAKVRI-GHFVEAQILEALGVDYID-E 95 (287)
T ss_pred HHHHHcCc-eEEEe--eccCchhh-HhcCCeeecCCHHHHHHHHHhCC--CCEEEEeec-cHHHHHHHHHHcCCCEEE-c
Confidence 66788899 88874 22345432 24555555556678999999988 784333222 223333444567888884 2
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC-CCC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN-ATG--- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~-~~g--- 198 (251)
. -...|..+.+...++++ ++.++||+ .++.+ +..+..-|+|.+..||. -||
T Consensus 96 T---------e~lrPade~~~~~K~~f---~vpfmad~------------~~l~E-Alrai~~GadmI~Tt~e~gTg~v~ 150 (287)
T TIGR00343 96 S---------EVLTPADWTFHIDKKKF---KVPFVCGA------------RDLGE-ALRRINEGAAMIRTKGEAGTGNIV 150 (287)
T ss_pred c---------CCCCcHHHHHHHHHHHc---CCCEEccC------------CCHHH-HHHHHHCCCCEEeccccCCCccHH
Confidence 1 11223222223333333 23444322 34444 34444569999999973 122
Q ss_pred -------------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEece
Q psy9039 199 -------------------------------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 199 -------------------------------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~ 242 (251)
..++.++|+++++..++||+ +-||| ||++++.+++ |||+.|||+
T Consensus 151 ~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa 230 (287)
T TIGR00343 151 EAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 230 (287)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence 13467889999998899998 99999 9999999997 999999999
Q ss_pred EeecC
Q psy9039 243 FKQGG 247 (251)
Q Consensus 243 ~~~~g 247 (251)
|.+..
T Consensus 231 I~ks~ 235 (287)
T TIGR00343 231 IFKSS 235 (287)
T ss_pred hhcCC
Confidence 97643
No 58
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=98.53 E-value=1.1e-06 Score=74.42 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=53.1
Q ss_pred cHHHHHHHhhhccccEEEe-----cCCCCCC--CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLII-----TGNATGD--PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~V-----TG~~~g~--~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++. ..+...|+|++++ |+.+.+. ...++.++++++.. ++||++.|||+++|+.+++. +||+.+||++
T Consensus 105 ~~~e~-~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i 183 (196)
T TIGR00693 105 NLEEL-AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAGADGVAVVSAI 183 (196)
T ss_pred CHHHH-HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEhHHh
Confidence 33443 3344468888764 4554442 22578888887765 69999999999999999986 9999999998
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
.+.
T Consensus 184 ~~~ 186 (196)
T TIGR00693 184 MQA 186 (196)
T ss_pred hCC
Confidence 764
No 59
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=98.53 E-value=1.3e-06 Score=76.10 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCCC-cchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 24 GPEI-TANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 24 ~P~~-~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
||+- +...+.. +.++++|- |+|+| +|. + -++-..+.+.++++|..++ +|+.+.-.-
T Consensus 23 DP~k~~~~~ei~--------~~~~~~GT-DaImI---GGS---~-----gvt~~~~~~~v~~ik~~~~--lPvilfP~~- 79 (240)
T COG1646 23 DPDKTEEADEIA--------EAAAEAGT-DAIMI---GGS---D-----GVTEENVDNVVEAIKERTD--LPVILFPGS- 79 (240)
T ss_pred CcccccccHHHH--------HHHHHcCC-CEEEE---CCc---c-----cccHHHHHHHHHHHHhhcC--CCEEEecCC-
Confidence 6766 3344444 77889999 99997 332 2 2345568888999998777 787766321
Q ss_pred ChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh---h-------hhhHhhccCCCCCCc
Q psy9039 103 CNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV---F-------TDIKKKHSSHAITAD 172 (251)
Q Consensus 103 ~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i---~-------a~v~~k~~~~~~~~~ 172 (251)
. -.+.. +++++-..+. ....+.-+++.-..+..+.-.+++.+.+.. + +.+....-+|. ..
T Consensus 80 ~----~~is~--~aDavff~sv--LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~--~~ 149 (240)
T COG1646 80 P----SGISP--YADAVFFPSV--LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPL--DK 149 (240)
T ss_pred h----hccCc--cCCeEEEEEE--ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCC--Cc
Confidence 1 11111 1232222110 011122233332222223333333222211 1 00110000221 22
Q ss_pred ccHHHHHHHhh-hccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 173 VDITETAKAAS-FFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 173 ~~i~~~a~~a~-~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...+..|+ ++|--.+-+ -|+..+.+...+.++++++.+ |+++|||| ++|+++++.. ||.+++|+.+.++.
T Consensus 150 ~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 150 EDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 33344444444 455444333 244456666778888877765 99999999 7999999996 99999999998875
No 60
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.53 E-value=2.5e-06 Score=76.00 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=106.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |.+.+-+..+.=-. .+ ....+++++.+.+. +|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~g~-~~l~i~Dl~~~~~~----~~-----~n~~~i~~i~~~~~--~pv~~gGGi~s-~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 37 RIFNEKEV-DELIVLDIDASKRG----SE-----PNYELIENLASECF--MPLCYGGGIKT-LEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred HHHHHcCC-CEEEEEECCCCcCC----Cc-----ccHHHHHHHHHhCC--CCEEECCCCCC-HHHHHHHHHCCCCEEEEC
Confidence 66788999 99987655432000 11 14567778877766 68644321112 222222223344443332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC--------C-C-CCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS--------H-A-ITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~--------~-~-~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ....+...+.+..++++...+.+ .+..+.+. . + ...+....+.++.....|++.+++
T Consensus 104 ----s------~~~~~~~~~~~~~~~~~~~~i~v--siD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 171 (258)
T PRK01033 104 ----T------AALEDPDLITEAAERFGSQSVVV--SIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILL 171 (258)
T ss_pred ----h------HHhcCHHHHHHHHHHhCCCcEEE--EEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEE
Confidence 1 01123344555566665333211 12222110 0 0 012344566667666789999999
Q ss_pred cCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c--CCEEEEeceEeecC
Q psy9039 193 TGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 TG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~--ADGvIVGS~~~~~g 247 (251)
|+... ...++.+.++++++.+++||+++||| +.+++.+++ . +||+++||+|.-.|
T Consensus 172 ~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 172 NSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred EccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 97532 22357899999999999999999999 689999987 4 99999999998764
No 61
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.51 E-value=3.4e-06 Score=73.21 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=107.0
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
++-+++|.++|+ +.||| +|+.|- -.+.++++|+.+++ .-+|.-+..++ ++...|...|++|
T Consensus 30 ~~i~~al~~~Gi-~~iEi------tl~~~~---------~~~~I~~l~~~~p~-~~IGAGTVl~~--~~a~~a~~aGA~F 90 (212)
T PRK05718 30 VPLAKALVAGGL-PVLEV------TLRTPA---------ALEAIRLIAKEVPE-ALIGAGTVLNP--EQLAQAIEAGAQF 90 (212)
T ss_pred HHHHHHHHHcCC-CEEEE------ecCCcc---------HHHHHHHHHHHCCC-CEEEEeeccCH--HHHHHHHHcCCCE
Confidence 333488999999 99987 455541 34567788887775 47899888874 6777888899999
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+=.. + -..++.+++.+.+. .++ | .-.+..+ +..+..+|+|.+.+== .+
T Consensus 91 ivsP----------~----~~~~vi~~a~~~~i---~~i---------P---G~~TptE-i~~a~~~Ga~~vKlFP--a~ 138 (212)
T PRK05718 91 IVSP----------G----LTPPLLKAAQEGPI---PLI---------P---GVSTPSE-LMLGMELGLRTFKFFP--AE 138 (212)
T ss_pred EECC----------C----CCHHHHHHHHHcCC---CEe---------C---CCCCHHH-HHHHHHCCCCEEEEcc--ch
Confidence 7642 0 13367777777654 221 1 1123334 5666678999998821 11
Q ss_pred CCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 199 DPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.......++.+|.-. ++|++.-|||+.+|+.++++ +..++.||.|..
T Consensus 139 ~~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 139 ASGGVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred hccCHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCC
Confidence 111467888888765 79999999999999999998 455566777753
No 62
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.50 E-value=1.2e-06 Score=77.11 Aligned_cols=177 Identities=13% Similarity=0.149 Sum_probs=108.8
Q ss_pred CCCcC-CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVP-VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~-~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.+.+ .|+ |-+.|-...+.--. . .....+++++.+.+. .|+-+-.=... .+...-..+.|++.+-.
T Consensus 38 ~~~~~~~Ga-~~l~ivDLd~a~~~-----~----~~n~~~I~~i~~~~~--~pi~vGGGIrs-~e~v~~~l~~Ga~kvvi 104 (234)
T PRK13587 38 AYYSQFECV-NRIHIVDLIGAKAQ-----H----AREFDYIKSLRRLTT--KDIEVGGGIRT-KSQIMDYFAAGINYCIV 104 (234)
T ss_pred HHHHhccCC-CEEEEEECcccccC-----C----cchHHHHHHHHhhcC--CeEEEcCCcCC-HHHHHHHHHCCCCEEEE
Confidence 44556 699 99987554433111 1 124567778877666 57655433333 34444445566665543
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC---C-C-CCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS---H-A-ITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~---~-~-~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+ .. ...+.+.+.+..++++ +. ++-.+..+.+. + + ..++.++.+.++.....++..+++|-..
T Consensus 105 g----t~------a~~~~~~l~~~~~~fg-~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~ 171 (234)
T PRK13587 105 G----TK------GIQDTDWLKEMAHTFP-GR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIA 171 (234)
T ss_pred C----ch------HhcCHHHHHHHHHHcC-CC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 2 11 1123445566677776 33 22223333321 0 0 1123445666666555788888888753
Q ss_pred C-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 197 T-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
. | ..++.++++++++.+++||+++||| +++++.++++ +|+++|||+|.+
T Consensus 172 ~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 172 KDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred CcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 3 2 3457889999999899999999999 7899999986 999999999987
No 63
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.50 E-value=2.7e-06 Score=78.27 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC---------------------CHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA---------------------DVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~---------------------~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
.+.++++.++..|+|++++++...+... .++.+.++++.+++||+..||| |.+++.++
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHH
Confidence 4667777777789999999886422111 1355778888889999999999 79999988
Q ss_pred hc--CCEEEEeceEeecC
Q psy9039 232 MT--ADALIIGSHFKQGG 247 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~~g 247 (251)
+. ||+|.|||++..+|
T Consensus 256 l~aGA~~Vqv~ta~~~~g 273 (325)
T cd04739 256 LLAGADVVMTTSALLRHG 273 (325)
T ss_pred HHcCCCeeEEehhhhhcC
Confidence 85 99999999998876
No 64
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.50 E-value=3e-06 Score=80.67 Aligned_cols=168 Identities=16% Similarity=0.213 Sum_probs=99.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-C-hHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-C-NKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~-~~~~~~ia~a~g~~Fir 120 (251)
+.+.++|+ |.|++ |.|.. .....+.++++++..+ .++.+|-+.- + +......|...|++++.
T Consensus 23 ~~~~~~Gv-~~ie~----g~p~~---------~~~~~~~i~~l~~~~~--~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 23 KEAVAGGA-DWIEA----GTPLI---------KSEGMNAIRTLRKNFP--DHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred HHHHhcCC-cEEEe----CCHHH---------HHhhHHHHHHHHHHCC--CCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 66678999 99975 43332 2223567777877765 4554443110 0 12245666777888877
Q ss_pred cccccccccCCCceeecCcchhHHHHHhcCCCcch-hhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC--
Q psy9039 121 AESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVL-VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-- 197 (251)
Q Consensus 121 ~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-- 197 (251)
..... + .....+..++.+++|..-+. ++ +. .+..+.++.+...|+|.+.+.=..+
T Consensus 87 v~g~~-----~----~~~~~~~i~~a~~~G~~~~~g~~------------s~-~t~~e~~~~a~~~GaD~I~~~pg~~~~ 144 (430)
T PRK07028 87 ILGLA-----D----DSTIEDAVRAARKYGVRLMADLI------------NV-PDPVKRAVELEELGVDYINVHVGIDQQ 144 (430)
T ss_pred EecCC-----C----hHHHHHHHHHHHHcCCEEEEEec------------CC-CCHHHHHHHHHhcCCCEEEEEeccchh
Confidence 42000 0 00123455566666652111 11 11 1222233444446888885431111
Q ss_pred -CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 -GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 -g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
......+.++++++..++||++.|||+.+|+.+++. ||++++||+|.+..+
T Consensus 145 ~~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 145 MLGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSAD 198 (430)
T ss_pred hcCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCC
Confidence 112235789999988889999999999999999986 999999999987543
No 65
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.47 E-value=3.1e-07 Score=82.39 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=104.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+..++.|. |.|++ .-+.|-.. ...|-+-..+--..++++|+.++ +|+-.-.=. .......+..+.|++++. +
T Consensus 31 ~iae~~g~-~~v~~--~~~~psd~-~~~gg~~Rm~~p~~I~aIk~~V~--iPVigk~Ri-gh~~Ea~~L~~~GvDiID-~ 102 (293)
T PRK04180 31 KIAEEAGA-VAVMA--LERVPADI-RAAGGVARMADPKMIEEIMDAVS--IPVMAKARI-GHFVEAQILEALGVDYID-E 102 (293)
T ss_pred HHHHHhCh-HHHHH--ccCCCchH-hhcCCeeecCCHHHHHHHHHhCC--CCeEEeehh-hHHHHHHHHHHcCCCEEe-c
Confidence 55577888 88754 23566543 33443333333356778998888 785443321 112233344567888884 2
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC-CC---
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA-TG--- 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~-~g--- 198 (251)
. -...|..+.....++++ ++.+++| -.++.+ |..+...|+|.+..||.. ||
T Consensus 103 T---------e~lrpad~~~~~~K~~f---~~~fmad------------~~~l~E-Alrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 103 S---------EVLTPADEEYHIDKWDF---TVPFVCG------------ARNLGE-ALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred c---------CCCCchHHHHHHHHHHc---CCCEEcc------------CCCHHH-HHHHHHCCCCeeeccCCCCCccHH
Confidence 1 11222222233334443 3344432 234444 444445699999999641 11
Q ss_pred ------------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceE
Q psy9039 199 ------------------------------DPADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 199 ------------------------------~~~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~ 243 (251)
..++.++|+++++..++||+ +-||| ||++++.+++ |||+.|||+|
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI 237 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGI 237 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHh
Confidence 12456889999998899998 99999 9999999997 9999999999
Q ss_pred eecC
Q psy9039 244 KQGG 247 (251)
Q Consensus 244 ~~~g 247 (251)
.+..
T Consensus 238 ~ks~ 241 (293)
T PRK04180 238 FKSG 241 (293)
T ss_pred hcCC
Confidence 7543
No 66
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.46 E-value=7.4e-06 Score=70.72 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=110.1
Q ss_pred HHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCc
Q psy9039 38 IRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGL 116 (251)
Q Consensus 38 a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~ 116 (251)
|++.++...+. + |.|++ |.|.-.. --.+.++++|+.+|+. ++...+=.-+. -.-..+|...|+
T Consensus 18 Ai~~a~~v~~~-~-diiEv----GTpLik~---------eG~~aV~~lr~~~pd~-~IvAD~Kt~D~G~~e~~ma~~aGA 81 (217)
T COG0269 18 AIEIAEEVADY-V-DIIEV----GTPLIKA---------EGMRAVRALRELFPDK-IIVADLKTADAGAIEARMAFEAGA 81 (217)
T ss_pred HHHHHHHhhhc-c-eEEEe----CcHHHHH---------hhHHHHHHHHHHCCCC-eEEeeeeecchhHHHHHHHHHcCC
Confidence 34444656666 9 99975 7766543 2237889999998875 77666554442 222445566788
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TGN 195 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG~ 195 (251)
+++-+- | +++. +.-....+..++++. .+.-| + ....+..+.++.....|+|.+++ +|.
T Consensus 82 d~~tV~---g--~A~~----~TI~~~i~~A~~~~~---~v~iD--------l-~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 82 DWVTVL---G--AADD----ATIKKAIKVAKEYGK---EVQID--------L-IGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CEEEEE---e--cCCH----HHHHHHHHHHHHcCC---eEEEE--------e-ecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 887752 1 1111 113445566666664 22111 1 12234444455555578999877 442
Q ss_pred ---CCCCCCCHHHHHHHHhcCC--CCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 196 ---ATGDPADVSQLMSVKNAVD--LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 196 ---~~g~~~~~~~l~~vr~~~~--~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+|.....+.+.++|+..+ .+|.+.|||+++++..+.. +|-+|||+++.+.
T Consensus 141 D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 141 DAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred cHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCC
Confidence 2344445678888888876 7999999999999999997 9999999998653
No 67
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.46 E-value=3.5e-06 Score=73.97 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH--cCccceecccccccc-cC--CCc-eeecCcchhHHHHHhcC
Q psy9039 77 NMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA--AGLDFIRAESFVFGH-MA--DEG-LMNAQAGPLLRYRKQIG 150 (251)
Q Consensus 77 a~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a--~g~~Fir~~~~~~~~-~~--~~G-li~~da~e~~~~r~~l~ 150 (251)
.....+.+++ .. .|+.+|+-.+++.....++.. .+++++..|.-|-.. +. ..| -+.-|...+.+.-+.+.
T Consensus 56 ~i~~e~~~~~--~~--~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~ 131 (231)
T TIGR00736 56 YIIEQIKKAE--SR--ALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK 131 (231)
T ss_pred HHHHHHHHHh--hc--CCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH
Confidence 3444555554 23 599999999875333333322 456777776544221 10 112 11223222322222222
Q ss_pred CCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC-CCHHHHHHHHhcC-CCCEEEecCC-ChHh
Q psy9039 151 ADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-ADVSQLMSVKNAV-DLPILIGSGV-TSDN 227 (251)
Q Consensus 151 ~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-~~~~~l~~vr~~~-~~PV~vG~GI-~~~~ 227 (251)
...+.+. .|-... ..+....++++.++..|+|++.|-+...|.+ .+++.|+++++.+ ++||+..||| |.++
T Consensus 132 ~~~~PVs----vKiR~~--~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed 205 (231)
T TIGR00736 132 ELNKPIF----VKIRGN--CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIES 205 (231)
T ss_pred cCCCcEE----EEeCCC--CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHH
Confidence 1123332 232111 2334556777877778999999965544432 4678999999998 4999999999 7899
Q ss_pred HHHhhc--CCEEEEeceEeecCeec
Q psy9039 228 VEHYMT--ADALIIGSHFKQGGRTF 250 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g~~~ 250 (251)
+.+++. ||||.||++..++-..|
T Consensus 206 a~e~l~~GAd~VmvgR~~l~~~~~~ 230 (231)
T TIGR00736 206 AKEMLKAGADFVSVARAILKGNVEF 230 (231)
T ss_pred HHHHHHhCCCeEEEcHhhccCCcCc
Confidence 999996 99999999998765443
No 68
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.44 E-value=3.9e-06 Score=70.65 Aligned_cols=154 Identities=22% Similarity=0.286 Sum_probs=89.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
..+.++|+ +.|.+ .++..+.....+...++.+-. +... .|+.+| + ...+|.+.+++.++..
T Consensus 19 ~~~~~~gv-~~v~l--------R~k~~~~~~~~~~a~~l~~~~-~~~~--~~liin----~---~~~la~~~~~dGvHl~ 79 (180)
T PF02581_consen 19 EAALAAGV-DLVQL--------REKDLSDEELLELARRLAELC-QKYG--VPLIIN----D---RVDLALELGADGVHLG 79 (180)
T ss_dssp HHHHHTT--SEEEE--------E-SSS-HHHHHHHHHHHHHHH-HHTT--GCEEEE----S----HHHHHHCT-SEEEEB
T ss_pred HHHHHCCC-cEEEE--------cCCCCCccHHHHHHHHHHHHh-hcce--EEEEec----C---CHHHHHhcCCCEEEec
Confidence 44567799 99974 333223344444343433333 3345 577666 3 2456666777776642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC-----CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG-----NAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG-----~~~ 197 (251)
. ........|+.++.+. ++. .|.| +.++ ++.+...++|+++++= ++.
T Consensus 80 --------~------~~~~~~~~r~~~~~~~--~ig-----~S~h------~~~e-~~~a~~~g~dYv~~gpvf~T~sk~ 131 (180)
T PF02581_consen 80 --------Q------SDLPPAEARKLLGPDK--IIG-----ASCH------SLEE-AREAEELGADYVFLGPVFPTSSKP 131 (180)
T ss_dssp --------T------TSSSHHHHHHHHTTTS--EEE-----EEES------SHHH-HHHHHHCTTSEEEEETSS--SSSS
T ss_pred --------c------cccchHHhhhhcccce--EEE-----eecC------cHHH-HHHhhhcCCCEEEECCccCCCCCc
Confidence 1 1223555666665421 221 1223 3344 5666666889987743 454
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ .++.+.++++..++||++-|||+++|+.++.+ |||+.|.|++
T Consensus 132 ~~~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 132 GAPPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp S-TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred cccccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 4433 36889999999999999999999999999986 9999998864
No 69
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.42 E-value=6.1e-06 Score=71.17 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=106.9
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
+-+++|.++|+ +.+|| +|+.|. -...++++++.+++ +.+|.=+..+ .++...|...|++|+
T Consensus 24 ~~~~al~~~Gi-~~iEi------t~~t~~---------a~~~i~~l~~~~~~-~~vGAGTVl~--~~~a~~a~~aGA~Fi 84 (204)
T TIGR01182 24 PLAKALIEGGL-RVLEV------TLRTPV---------ALDAIRLLRKEVPD-ALIGAGTVLN--PEQLRQAVDAGAQFI 84 (204)
T ss_pred HHHHHHHHcCC-CEEEE------eCCCcc---------HHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEE
Confidence 33488999999 99987 666552 34456777777765 5899998886 466777788999997
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
=.. + + ..++.+++++.+. ..+ | .-.+ ...+..|..+|+|.+=+==.. .
T Consensus 85 vsP----------~-~---~~~v~~~~~~~~i---~~i---------P---G~~T-ptEi~~A~~~Ga~~vKlFPA~--~ 132 (204)
T TIGR01182 85 VSP----------G-L---TPELAKHAQDHGI---PII---------P---GVAT-PSEIMLALELGITALKLFPAE--V 132 (204)
T ss_pred ECC----------C-C---CHHHHHHHHHcCC---cEE---------C---CCCC-HHHHHHHHHCCCCEEEECCch--h
Confidence 531 1 1 2357777777654 221 1 1123 333466666788887442111 0
Q ss_pred CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.....++.+|.-. ++|++.-|||+++|+.++++ +.++.+||+|..
T Consensus 133 ~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 133 SGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred cCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcC
Confidence 11256788888765 79999999999999999997 999999999965
No 70
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.42 E-value=6.2e-06 Score=72.36 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+. ...+ ....+++++.+.+. .|+-+-.=... .+...-....|++-+-.+
T Consensus 42 ~~~~~~g~-~~l~i~DLd~~-~~~~---------~n~~~i~~i~~~~~--~~v~vgGGir~-~edv~~~l~~Ga~~viig 107 (233)
T cd04723 42 RAYKELGF-RGLYIADLDAI-MGRG---------DNDEAIRELAAAWP--LGLWVDGGIRS-LENAQEWLKRGASRVIVG 107 (233)
T ss_pred HHHHHCCC-CEEEEEeCccc-cCCC---------ccHHHHHHHHHhCC--CCEEEecCcCC-HHHHHHHHHcCCCeEEEc
Confidence 66788899 99998766544 1211 13556777777666 56555443333 344444444555443332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCC-CCCCcccHHHHHHHhhhccccEEEecCC---CCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH-AITADVDITETAKAASFFLSDGLIITGN---ATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~-~~~~~~~i~~~a~~a~~~~~D~v~VTG~---~~g 198 (251)
+. ...+ +-+.+..++++.. +++..+..+.+.- ......+..+.++....+ ++.+++|-- .++
T Consensus 108 ----t~------~~~~-~~~~~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~ 173 (233)
T cd04723 108 ----TE------TLPS-DDDEDRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG 173 (233)
T ss_pred ----ce------eccc-hHHHHHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC
Confidence 11 1112 3345666667642 2322233232200 001234566666655555 888877654 233
Q ss_pred CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 199 DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..++.+.++++.+.+++||++|||| +.+++.+++. +|+|+|||+|-.+.
T Consensus 174 ~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~ 225 (233)
T cd04723 174 QGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG 225 (233)
T ss_pred CCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence 4456788999999899999999999 7899999997 99999999986653
No 71
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.41 E-value=2.6e-06 Score=77.42 Aligned_cols=141 Identities=23% Similarity=0.269 Sum_probs=85.6
Q ss_pred HHHHHhCCCCccEEEEEeeC-ChH---HHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhh
Q psy9039 83 AEIRKVLPPSVPVGVQILSG-CNK---AALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFT 158 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N-~~~---~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a 158 (251)
+++|+..+ .|+++|+|.+ ++. .....+...|++++..+.-+- ..|.. .....+.+.++..+. .++
T Consensus 108 ~~i~~~~~--~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p----~~~~~-~~~~~i~~l~~~~~~---pvi- 176 (299)
T cd02809 108 EEVAAAAP--GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP----VLGRR-LTWDDLAWLRSQWKG---PLI- 176 (299)
T ss_pred HHHHHhcC--CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC----CCCCC-CCHHHHHHHHHhcCC---CEE-
Confidence 45666556 5999999986 321 123444456677666541111 11100 111223344444332 221
Q ss_pred hhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHh
Q psy9039 159 DIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 159 ~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~ 231 (251)
.......+.++.+...|+|+++|+|.. . +..++++.+.++++.. ++||++.||| ++.++.++
T Consensus 177 -----------vK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~ka 245 (299)
T cd02809 177 -----------LKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKA 245 (299)
T ss_pred -----------EeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHH
Confidence 011122345677777899999997742 1 1234568888888876 5999999999 79999888
Q ss_pred hc--CCEEEEeceEee
Q psy9039 232 MT--ADALIIGSHFKQ 245 (251)
Q Consensus 232 ~~--ADGvIVGS~~~~ 245 (251)
+. ||+|.+|+.|+.
T Consensus 246 l~lGAd~V~ig~~~l~ 261 (299)
T cd02809 246 LALGADAVLIGRPFLY 261 (299)
T ss_pred HHcCCCEEEEcHHHHH
Confidence 86 999999998874
No 72
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.39 E-value=1e-05 Score=73.36 Aligned_cols=74 Identities=30% Similarity=0.406 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------------------C------CCCHHHHHHHHhcCCCCEEEecCC-ChHhH
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------------------D------PADVSQLMSVKNAVDLPILIGSGV-TSDNV 228 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------------------~------~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v 228 (251)
.+.++++.++..|+|++.+++...+ . +..++.+.++|+.+++||+..||| |++++
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 4556677666779999887542111 0 113577889999999999999999 79999
Q ss_pred HHhhc--CCEEEEeceEeecC
Q psy9039 229 EHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 229 ~~~~~--ADGvIVGS~~~~~g 247 (251)
.+++. ||+|.+||++..|-
T Consensus 250 ~~~l~aGAd~V~igr~ll~~P 270 (301)
T PRK07259 250 IEFIMAGASAVQVGTANFYDP 270 (301)
T ss_pred HHHHHcCCCceeEcHHHhcCc
Confidence 99985 99999999998853
No 73
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.37 E-value=7.5e-06 Score=75.48 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=90.3
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCChHHHHHH---HHHcCccceeccccc-ccccCCCceeecC-cchhH-HHHHhcCCCc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCNKAALAT---AQAAGLDFIRAESFV-FGHMADEGLMNAQ-AGPLL-RYRKQIGADN 153 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i---a~a~g~~Fir~~~~~-~~~~~~~Gli~~d-a~e~~-~~r~~l~~~~ 153 (251)
+.++++++..+ +|+.+++..........+ +...|++++..|..| ....+..|.-.++ ..+++ ..++.. +
T Consensus 91 ~~i~~~~~~~~--~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~---~ 165 (334)
T PRK07565 91 ELIRRAKEAVD--IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV---S 165 (334)
T ss_pred HHHHHHHHhcC--CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc---C
Confidence 35556666666 799999977653222222 223567888876433 1111111110000 11111 122221 2
Q ss_pred chhhhhhHhhccCCCCCCc-ccHHHHHHHhhhccccEEEecCCCCCCCCC---------------------HHHHHHHHh
Q psy9039 154 VLVFTDIKKKHSSHAITAD-VDITETAKAASFFLSDGLIITGNATGDPAD---------------------VSQLMSVKN 211 (251)
Q Consensus 154 i~i~a~v~~k~~~~~~~~~-~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~---------------------~~~l~~vr~ 211 (251)
+.++. |- ++. ..+.++++.++..|+|++.+++...+...+ ++.+.++++
T Consensus 166 iPV~v----Kl-----~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~ 236 (334)
T PRK07565 166 IPVAV----KL-----SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSG 236 (334)
T ss_pred CcEEE----Ee-----CCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHh
Confidence 23322 21 111 135677777777899999998764222111 245677888
Q ss_pred cCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 212 AVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 212 ~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
.+++||+..||| |.+++.+++. ||+|.|||++..+|
T Consensus 237 ~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g 275 (334)
T PRK07565 237 RVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG 275 (334)
T ss_pred hcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence 889999999999 7999999886 99999999999876
No 74
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.34 E-value=3.9e-06 Score=77.86 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
..+.++|+ +.|.+ ..+. ........+.+.++++-+... +.++.|+. ..+|.+.+++.++..
T Consensus 164 ~~al~~Gv-~~VQL--------R~K~-~~~~~~~~~a~~L~~l~~~~~------~~lIIND~---vdlAl~~~aDGVHLg 224 (347)
T PRK02615 164 EAALKGGV-TLVQY--------RDKT-ADDRQRLEEAKKLKELCHRYG------ALFIVNDR---VDIALAVDADGVHLG 224 (347)
T ss_pred HHHHHcCC-CEEEE--------CCCC-CCHHHHHHHHHHHHHHHHHhC------CeEEEeCh---HHHHHHcCCCEEEeC
Confidence 44567899 99974 2221 122222333344444444334 44555563 567777777776642
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
...+ .....|+.++.. +++. .|.| +.++ +..|...|+|++++ |.++.
T Consensus 225 --------q~dl------~~~~aR~llg~~--~iIG-----~S~H------s~~e-~~~A~~~GaDYI~lGPvf~T~tKp 276 (347)
T PRK02615 225 --------QEDL------PLAVARQLLGPE--KIIG-----RSTT------NPEE-MAKAIAEGADYIGVGPVFPTPTKP 276 (347)
T ss_pred --------hhhc------CHHHHHHhcCCC--CEEE-----EecC------CHHH-HHHHHHcCCCEEEECCCcCCCCCC
Confidence 2211 123445555542 2221 1222 3333 35555568999876 44454
Q ss_pred CCC-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDP-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+.. ..++.++.+++..++||++-|||+++|+.+++. ||||.|+|+|..
T Consensus 277 ~~~~~Gle~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 277 GKAPAGLEYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhC
Confidence 433 357889998888899999999999999999986 999999999875
No 75
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.32 E-value=1.1e-05 Score=69.04 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=91.4
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESF 124 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~ 124 (251)
+.++|+ +.|.+ .++..+. +...+.++++++... + +.-++.|+. ..+|...+++.++..
T Consensus 23 ~~~~g~-~~iql--------R~k~~~~----~~~~~~~~~l~~~~~---~-~~~liin~~---~~la~~~~~~gvHl~-- 80 (201)
T PRK07695 23 QIHSEV-DYIHI--------REREKSA----KELYEGVESLLKKGV---P-ASKLIINDR---VDIALLLNIHRVQLG-- 80 (201)
T ss_pred HHhCCC-CEEEE--------cCCCCCH----HHHHHHHHHHHHhCC---C-CCeEEEECH---HHHHHHcCCCEEEeC--
Confidence 568899 99974 2322112 234456666665422 3 345666763 556666666665532
Q ss_pred cccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-----CCCCCC
Q psy9039 125 VFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-----GNATGD 199 (251)
Q Consensus 125 ~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-----G~~~g~ 199 (251)
.. .......|+.++ +..+-. +.+ ++++ ++.+...|+|+++.. .++.+.
T Consensus 81 ------~~------~~~~~~~r~~~~--~~~ig~------s~~------s~e~-a~~a~~~Gadyi~~g~v~~t~~k~~~ 133 (201)
T PRK07695 81 ------YR------SFSVRSVREKFP--YLHVGY------SVH------SLEE-AIQAEKNGADYVVYGHVFPTDCKKGV 133 (201)
T ss_pred ------cc------cCCHHHHHHhCC--CCEEEE------eCC------CHHH-HHHHHHcCCCEEEECCCCCCCCCCCC
Confidence 11 112344555543 222210 111 2333 455555689998542 222222
Q ss_pred C-CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 P-ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~-~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+ ...+.++++++.+++||++-|||+++|+.+++. +||+.|||+|..
T Consensus 134 ~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 134 PARGLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 2 246788888888899999999999999999996 999999999875
No 76
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.32 E-value=3.7e-06 Score=73.22 Aligned_cols=45 Identities=24% Similarity=0.469 Sum_probs=36.7
Q ss_pred HHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 204 SQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 204 ~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+.++.+|+.. ++||++|||| +++++..++. +||++|||++.+-.+
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~ 210 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKD 210 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcC
Confidence 3456678755 7999999999 6788888884 999999999987544
No 77
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.31 E-value=1.4e-05 Score=68.82 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=106.0
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
+-+++|.++|+ ..+|| +|+.|. -...++++++..++ .-+|.=+..+ .++...|...|++|+
T Consensus 20 ~ia~al~~gGi-~~iEi------t~~tp~---------a~~~I~~l~~~~~~-~~vGAGTVl~--~e~a~~ai~aGA~Fi 80 (201)
T PRK06015 20 PLARALAAGGL-PAIEI------TLRTPA---------ALDAIRAVAAEVEE-AIVGAGTILN--AKQFEDAAKAGSRFI 80 (201)
T ss_pred HHHHHHHHCCC-CEEEE------eCCCcc---------HHHHHHHHHHHCCC-CEEeeEeCcC--HHHHHHHHHcCCCEE
Confidence 33488999999 99987 677662 33566777777665 4799998886 467788888999997
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
=... -..++.+++++.+. ..+ | .-.+. ..+..|..+|+|.+=+==.. .
T Consensus 81 vSP~--------------~~~~vi~~a~~~~i---~~i---------P---G~~Tp-tEi~~A~~~Ga~~vK~FPa~--~ 128 (201)
T PRK06015 81 VSPG--------------TTQELLAAANDSDV---PLL---------P---GAATP-SEVMALREEGYTVLKFFPAE--Q 128 (201)
T ss_pred ECCC--------------CCHHHHHHHHHcCC---CEe---------C---CCCCH-HHHHHHHHCCCCEEEECCch--h
Confidence 6320 13457777777664 221 1 11232 33456666788887442110 0
Q ss_pred CCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 200 PADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 200 ~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
-.....++.+|.-. ++|++.-|||+.+|+.++++ +..+..||++..
T Consensus 129 ~GG~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 129 AGGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred hCCHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCC
Confidence 11256788888765 79999999999999999997 677777888854
No 78
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.31 E-value=2.4e-06 Score=75.18 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=81.9
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+-+|+... -.+++-.+.||..+.++..+.+-.++..++ |.++++ ...++.....|+|++-.=
T Consensus 89 ~~~~~iKlE-----Vi~d~~~Llpd~~~tv~aa~~L~~~Gf~vl---------pyc~dd---~~~ar~l~~~G~~~vmPl 151 (248)
T cd04728 89 LGTDWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFTVL---------PYCTDD---PVLAKRLEDAGCAAVMPL 151 (248)
T ss_pred hCCCeEEEE-----EecCccccccCHHHHHHHHHHHHHCCCEEE---------EEeCCC---HHHHHHHHHcCCCEeCCC
Confidence 345888864 355777888999999999999833333443 222232 233455555588888442
Q ss_pred C----CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 G----NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G----~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
| +..|. .+.+.|+.+++..++||++++|| |++++.++++ |||+.|||++.+.
T Consensus 152 g~pIGsg~Gi-~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a 210 (248)
T cd04728 152 GSPIGSGQGL-LNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKA 210 (248)
T ss_pred CcCCCCCCCC-CCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCC
Confidence 2 22232 24788999999889999999999 7999999997 9999999999764
No 79
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.31 E-value=5.8e-06 Score=71.58 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=54.8
Q ss_pred HHHHhhhccccEEEecCCCC----CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 178 TAKAASFFLSDGLIITGNAT----GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
.++.....|+|.+.+++... ..+.+++.++++|+.+++||++.||| +++++.+++. ||++.+|+++..|-.|
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~ 222 (231)
T cd02801 143 LAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWL 222 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHH
Confidence 33333345778887777532 12346788999999999999999999 7999998884 9999999999887543
No 80
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.30 E-value=5.1e-06 Score=76.45 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=58.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---------------CCC------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---------------GDP------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---------------g~~------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|++.+++... |.. ..++.+.++|+.+ ++||+.-||| |++++.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 466677766668999999887421 111 1147788999988 7999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||+|.|||++..+|-
T Consensus 297 e~l~aGAd~V~vg~~~~~~gP 317 (327)
T cd04738 297 EKIRAGASLVQLYTGLVYEGP 317 (327)
T ss_pred HHHHcCCCHHhccHHHHhhCc
Confidence 9995 999999999987764
No 81
>PLN02826 dihydroorotate dehydrogenase
Probab=98.29 E-value=9.6e-06 Score=76.84 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=58.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCC---------------CC-C--C----CHHHHHHHHhcC--CCCEEEecCC-ChHh
Q psy9039 173 VDITETAKAASFFLSDGLIITGNAT---------------GD-P--A----DVSQLMSVKNAV--DLPILIGSGV-TSDN 227 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~---------------g~-~--~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~ 227 (251)
+.+.++++.+...|+|++++|.+-. |. . + .++.+.++++.+ ++||+.-||| |.++
T Consensus 276 ~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~D 355 (409)
T PLN02826 276 EDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGED 355 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHH
Confidence 3577888888778999999986311 11 1 1 245677888877 7999999999 7899
Q ss_pred HHHhhc--CCEEEEeceEeecC
Q psy9039 228 VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+++. |+.|.|+|+|+..|
T Consensus 356 a~e~i~AGAs~VQv~Ta~~~~G 377 (409)
T PLN02826 356 AYKKIRAGASLVQLYTAFAYEG 377 (409)
T ss_pred HHHHHHhCCCeeeecHHHHhcC
Confidence 888885 99999999998866
No 82
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.28 E-value=1e-05 Score=71.33 Aligned_cols=178 Identities=17% Similarity=0.116 Sum_probs=105.9
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-|.|-...+.- . .+ ....+++++.+.+. .|+-+-.=... .+...-....|++-+-.+
T Consensus 39 ~~~~~~g~-~~l~ivDLd~~~-g----~~-----~n~~~i~~i~~~~~--~pv~vgGGirs-~edv~~~l~~Ga~kvviG 104 (241)
T PRK14024 39 LAWQRDGA-EWIHLVDLDAAF-G----RG-----SNRELLAEVVGKLD--VKVELSGGIRD-DESLEAALATGCARVNIG 104 (241)
T ss_pred HHHHHCCC-CEEEEEeccccC-C----CC-----ccHHHHHHHHHHcC--CCEEEcCCCCC-HHHHHHHHHCCCCEEEEC
Confidence 55778899 999875544321 1 11 13467788887776 68765543333 444555555666544321
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh---Hhh-ccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI---KKK-HSSHAITADVDITETAKAASFFLSDGLIITGNAT- 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v---~~k-~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~- 197 (251)
+ ....+.+.+.+..++++. .+-+=-|+ ..+ +|.. ....+..+.++.....|++.+++|+...
T Consensus 105 ----s------~~l~~p~l~~~i~~~~~~-~i~vsld~~~~~v~~~Gw~--~~~~~~~~~~~~l~~~G~~~iiv~~~~~~ 171 (241)
T PRK14024 105 ----T------AALENPEWCARVIAEHGD-RVAVGLDVRGHTLAARGWT--RDGGDLWEVLERLDSAGCSRYVVTDVTKD 171 (241)
T ss_pred ----c------hHhCCHHHHHHHHHHhhh-hEEEEEEEeccEeccCCee--ecCccHHHHHHHHHhcCCCEEEEEeecCC
Confidence 1 111233334444444432 21110011 011 1111 1223445556666667999999988532
Q ss_pred --CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh----c-CCEEEEeceEeecC
Q psy9039 198 --GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM----T-ADALIIGSHFKQGG 247 (251)
Q Consensus 198 --g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~----~-ADGvIVGS~~~~~g 247 (251)
...++++.++++++.+++||+++||| |.+++.++. . +|||++|++|..+.
T Consensus 172 g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~ 229 (241)
T PRK14024 172 GTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGA 229 (241)
T ss_pred CCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence 22357899999999999999999999 789988763 3 99999999997664
No 83
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=98.28 E-value=1.8e-06 Score=75.55 Aligned_cols=65 Identities=17% Similarity=0.457 Sum_probs=43.9
Q ss_pred hccccEEEec-CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 184 FFLSDGLIIT-GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++|-..+-+- |+.+-.+...+.++.+|+..+.|+++|||| |+++++++++ ||.++||++|.+|..
T Consensus 151 ~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-
T ss_pred HhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcch
Confidence 4666666552 243322222344555556679999999999 7999999996 999999999988763
No 84
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.28 E-value=2.7e-06 Score=74.48 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=111.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+.- .| ......+++++.+.++ .|+-+-.=... .+...-....|++-+-.+
T Consensus 36 ~~~~~~g~-~~l~ivDLdaa~------~g---~~~n~~~i~~i~~~~~--~~i~vgGGIrs-~ed~~~ll~~Ga~~Vvig 102 (229)
T PF00977_consen 36 KAFNEQGA-DELHIVDLDAAK------EG---RGSNLELIKEIAKETG--IPIQVGGGIRS-IEDAERLLDAGADRVVIG 102 (229)
T ss_dssp HHHHHTT--SEEEEEEHHHHC------CT---HHHHHHHHHHHHHHSS--SEEEEESSE-S-HHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCC-CEEEEEEccCcc------cC---chhHHHHHHHHHhcCC--ccEEEeCccCc-HHHHHHHHHhCCCEEEeC
Confidence 55678899 999875543220 12 2346678889988877 67766643333 344444445555543322
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhcc-------CCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHS-------SHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~-------~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
. ....+.+.+.+..+++|.+.+-+ .+..+++ .. ..++.++.+.++.....|+..+++|--
T Consensus 103 ----t------~~~~~~~~l~~~~~~~g~~~ivv--slD~~~g~~v~~~gw~-~~~~~~~~~~~~~~~~~g~~~ii~tdi 169 (229)
T PF00977_consen 103 ----T------EALEDPELLEELAERYGSQRIVV--SLDARDGYKVATNGWQ-ESSGIDLEEFAKRLEELGAGEIILTDI 169 (229)
T ss_dssp ----H------HHHHCCHHHHHHHHHHGGGGEEE--EEEEEETEEEEETTTT-EEEEEEHHHHHHHHHHTT-SEEEEEET
T ss_pred ----h------HHhhchhHHHHHHHHcCcccEEE--EEEeeeceEEEecCcc-ccCCcCHHHHHHHHHhcCCcEEEEeec
Confidence 1 11234555667777777533322 2322322 11 123467888888877789999999875
Q ss_pred CCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCee
Q psy9039 196 ATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 196 ~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
... ..++.++++++++.++.|++++||| +.+++.++.. +||++|||+| +.|++
T Consensus 170 ~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al-~~g~i 228 (229)
T PF00977_consen 170 DRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSAL-HEGKI 228 (229)
T ss_dssp TTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEESHHH-HTTSS
T ss_pred cccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHh-hCCcc
Confidence 332 3456788999999899999999999 7899999986 9999999999 55543
No 85
>PRK08999 hypothetical protein; Provisional
Probab=98.26 E-value=2.8e-05 Score=70.60 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=52.9
Q ss_pred cHHHHHHHhhhccccEEEe-----cCCCCCCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLII-----TGNATGDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~V-----TG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..|...++|++++ |.++.+.++ ..+.++++++..++||++-|||+++|+.++++ |||+.|-|+|
T Consensus 235 ~~~~-~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~ 311 (312)
T PRK08999 235 DAEE-LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHGAQGIAGIRGL 311 (312)
T ss_pred CHHH-HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhCCCEEEEEEEe
Confidence 3344 34454457888877 444544333 46888999888999999999999999999986 9999999987
No 86
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.22 E-value=3e-06 Score=72.65 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=98.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
++|.++|+ ..+|| +|+.|. ....+++++++.++ .-+|.=+..+ .++...|...|++|+=..
T Consensus 27 ~al~~gGi-~~iEi------T~~t~~---------a~~~I~~l~~~~p~-~~vGAGTV~~--~e~a~~a~~aGA~FivSP 87 (196)
T PF01081_consen 27 EALIEGGI-RAIEI------TLRTPN---------ALEAIEALRKEFPD-LLVGAGTVLT--AEQAEAAIAAGAQFIVSP 87 (196)
T ss_dssp HHHHHTT---EEEE------ETTSTT---------HHHHHHHHHHHHTT-SEEEEES--S--HHHHHHHHHHT-SEEEES
T ss_pred HHHHHCCC-CEEEE------ecCCcc---------HHHHHHHHHHHCCC-CeeEEEeccC--HHHHHHHHHcCCCEEECC
Confidence 88999999 99987 676652 23456677777675 4799998886 577888889999997632
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPAD 202 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~ 202 (251)
. -..++.+++++.+..-+. .......+..|..+|+|.+=+==.. .-..
T Consensus 88 ~--------------~~~~v~~~~~~~~i~~iP----------------G~~TptEi~~A~~~G~~~vK~FPA~--~~GG 135 (196)
T PF01081_consen 88 G--------------FDPEVIEYAREYGIPYIP----------------GVMTPTEIMQALEAGADIVKLFPAG--ALGG 135 (196)
T ss_dssp S----------------HHHHHHHHHHTSEEEE----------------EESSHHHHHHHHHTT-SEEEETTTT--TTTH
T ss_pred C--------------CCHHHHHHHHHcCCcccC----------------CcCCHHHHHHHHHCCCCEEEEecch--hcCc
Confidence 1 134577888877652221 1112233455666788887442111 1112
Q ss_pred HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 203 VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 203 ~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...++.++.-. ++|++.-|||+++|+.++++ +.++.+||++...
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPK 182 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCH
Confidence 67899888765 79999999999999999997 9999999998653
No 87
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.22 E-value=3.1e-06 Score=78.45 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---------------CCC--C----CHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---------------GDP--A----DVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---------------g~~--~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|++.+++... +.+ + .++.+.++++.+ ++||+.-||| |++++.
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~ 305 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAY 305 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 466777777778999999988531 111 1 235788898888 7999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecCe
Q psy9039 230 HYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++. ||+|.|||++..+|-
T Consensus 306 e~l~aGAd~V~v~~~~~~~gP 326 (344)
T PRK05286 306 EKIRAGASLVQIYSGLIYEGP 326 (344)
T ss_pred HHHHcCCCHHHHHHHHHHhCc
Confidence 9985 999999999987653
No 88
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.21 E-value=5.3e-06 Score=73.07 Aligned_cols=115 Identities=18% Similarity=0.281 Sum_probs=80.5
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+-+|+... -.+++-...||..+.++..+.+-.++..++ |.++++ ...++.....|+|++-.=
T Consensus 89 ~~~~~iKlE-----Vi~d~~~llpd~~~tv~aa~~L~~~Gf~vl---------pyc~~d---~~~ak~l~~~G~~~vmPl 151 (250)
T PRK00208 89 LGTNWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFVVL---------PYCTDD---PVLAKRLEEAGCAAVMPL 151 (250)
T ss_pred hCCCeEEEE-----EecCCCCCCcCHHHHHHHHHHHHHCCCEEE---------EEeCCC---HHHHHHHHHcCCCEeCCC
Confidence 345888864 355677778888899999998833333333 222332 223455554588888442
Q ss_pred ----CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 ----GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 ----G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|+..|. .+.+.++.+++..++||++++|| +++++.+.++ |||+.|||++.+.
T Consensus 152 g~pIGsg~gi-~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka 210 (250)
T PRK00208 152 GAPIGSGLGL-LNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVA 210 (250)
T ss_pred CcCCCCCCCC-CCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCC
Confidence 222232 24678999998889999999999 7999999997 9999999999763
No 89
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.16 E-value=3.6e-05 Score=69.91 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=57.4
Q ss_pred cHHHHHHHhhhccccEEEecCCC----------------------CC-C--CC----CHHHHHHHHhcC--CCCEEEecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA----------------------TG-D--PA----DVSQLMSVKNAV--DLPILIGSG 222 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~----------------------~g-~--~~----~~~~l~~vr~~~--~~PV~vG~G 222 (251)
.+.++++.+...|+|+++++.+- .+ . ++ .++.+.++++.+ ++||+.-||
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GG 260 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGG 260 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECC
Confidence 56677777777899999854311 11 1 11 257899999998 899999999
Q ss_pred C-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 223 V-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 223 I-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
| +.+++.+++. ||+|.|||++...|
T Consensus 261 I~~~~da~~~l~aGA~~V~i~ta~~~~g 288 (299)
T cd02940 261 IESWEDAAEFLLLGASVVQVCTAVMNQG 288 (299)
T ss_pred CCCHHHHHHHHHcCCChheEceeecccC
Confidence 9 7899998885 99999999998865
No 90
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.14 E-value=4.8e-05 Score=66.45 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=107.3
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.+++-+++|.++|+ ..+|| +|+.|. ...+..++.+++++..++ +-+|.=+..| .++...|...|+
T Consensus 28 ~a~~~~~al~~gGi-~~iEi------T~~tp~-----a~~~i~~l~~~~~~~~p~-~~vGaGTVl~--~e~a~~a~~aGA 92 (222)
T PRK07114 28 VAKKVIKACYDGGA-RVFEF------TNRGDF-----AHEVFAELVKYAAKELPG-MILGVGSIVD--AATAALYIQLGA 92 (222)
T ss_pred HHHHHHHHHHHCCC-CEEEE------eCCCCc-----HHHHHHHHHHHHHhhCCC-eEEeeEeCcC--HHHHHHHHHcCC
Confidence 34445588999999 99987 666552 222334444455555554 4799999887 467777888999
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+|+=... + ..++.+++++.+. .++ +..-....+..|..+|+|.+=+==..
T Consensus 93 ~FiVsP~-----------~---~~~v~~~~~~~~i---~~i-------------PG~~TpsEi~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 93 NFIVTPL-----------F---NPDIAKVCNRRKV---PYS-------------PGCGSLSEIGYAEELGCEIVKLFPGS 142 (222)
T ss_pred CEEECCC-----------C---CHHHHHHHHHcCC---CEe-------------CCCCCHHHHHHHHHCCCCEEEECccc
Confidence 9976320 1 3447777777654 221 12222333456666788887442111
Q ss_pred CCCCCCHHHHHHHHhcC-CCCEEEecCCCh--HhHHHhhc--CCEEEEeceEee
Q psy9039 197 TGDPADVSQLMSVKNAV-DLPILIGSGVTS--DNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~--~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+ ....++.++.-. ++|++.-|||++ +|+.++++ +.++-+||++..
T Consensus 143 ~~---G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 143 VY---GPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred cc---CHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 22 267788888765 799999999987 89999997 999999999853
No 91
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.13 E-value=2e-05 Score=72.41 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=60.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
...++++.++..|+|.+.++|.... ...+++.++++|+.+++||+..||| |++++.++++ ||||.+|.++..
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 4556667767789999999885321 2346789999999999999999999 7999999984 999999999887
Q ss_pred cC
Q psy9039 246 GG 247 (251)
Q Consensus 246 ~g 247 (251)
|.
T Consensus 230 nP 231 (321)
T PRK10415 230 RP 231 (321)
T ss_pred CC
Confidence 64
No 92
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.13 E-value=3e-06 Score=77.41 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=53.9
Q ss_pred HHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
++++..+.+|+|.+.+++..... ....+.++++|+.+++||++++|| +++++.+++. ||.|.+|
T Consensus 232 ~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 232 EIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred HHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 33444444578888776643211 123467888999999999999999 6999999984 9999999
Q ss_pred ceEeecCee
Q psy9039 241 SHFKQGGRT 249 (251)
Q Consensus 241 S~~~~~g~~ 249 (251)
+.|+.|-.|
T Consensus 312 R~~ladP~l 320 (327)
T cd02803 312 RALLADPDL 320 (327)
T ss_pred HHHHhCccH
Confidence 999877543
No 93
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=4.5e-05 Score=65.81 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=106.6
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
|+++.-+++|+++|+ ++||| ||+-|. -.+.|+++++++++ .-+|.=+..|+ .++..+...|
T Consensus 25 e~a~~~a~Ali~gGi-~~IEI------Tl~sp~---------a~e~I~~l~~~~p~-~lIGAGTVL~~--~q~~~a~~aG 85 (211)
T COG0800 25 EEALPLAKALIEGGI-PAIEI------TLRTPA---------ALEAIRALAKEFPE-ALIGAGTVLNP--EQARQAIAAG 85 (211)
T ss_pred HHHHHHHHHHHHcCC-CeEEE------ecCCCC---------HHHHHHHHHHhCcc-cEEccccccCH--HHHHHHHHcC
Confidence 445555689999999 99987 888874 35677888887774 47888888874 6788888999
Q ss_pred ccceecccccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEE-Eec
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGL-IIT 193 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v-~VT 193 (251)
++|+=. |. -.|+.+++...+ +|. .+..-....+..|..+|++.+ ..-
T Consensus 86 a~fiVs---------------P~~~~ev~~~a~~~~---------------ip~-~PG~~TptEi~~Ale~G~~~lK~FP 134 (211)
T COG0800 86 AQFIVS---------------PGLNPEVAKAANRYG---------------IPY-IPGVATPTEIMAALELGASALKFFP 134 (211)
T ss_pred CCEEEC---------------CCCCHHHHHHHHhCC---------------Ccc-cCCCCCHHHHHHHHHcChhheeecC
Confidence 999653 22 234555555554 343 233333344566666677776 334
Q ss_pred CCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 194 GNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 194 G~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+...|. ...++.++.-. +++++-=|||+++|+++++. +.++=+||+|...
T Consensus 135 a~~~Gg---~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~ 187 (211)
T COG0800 135 AEVVGG---PAMLKALAGPFPQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPK 187 (211)
T ss_pred ccccCc---HHHHHHHcCCCCCCeEeecCCCCHHHHHHHHhCCceEEecCccccCh
Confidence 433333 34455444333 79999999999999999997 6666668998753
No 94
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.08 E-value=0.00014 Score=68.62 Aligned_cols=167 Identities=15% Similarity=0.160 Sum_probs=99.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHH-HHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA-LATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~-~~ia~a~g~~Fir~ 121 (251)
+.|.+.++ +.+++ |.|+-.. -| ..+++++|+..++ .|+-+.+...++... ...+...|++++-+
T Consensus 192 ~~l~~~~~-~~iKv----G~~L~~~--~G-------~~iVk~Lr~~~~~-~~I~~DLK~~Di~~~vv~~~a~aGAD~vTV 256 (391)
T PRK13307 192 SQLPKSDH-IIIEA----GTPLIKK--FG-------LEVISKIREVRPD-AFIVADLKTLDTGNLEARMAADATADAVVI 256 (391)
T ss_pred Hhcccccc-eEEEE----CHHHHHH--hC-------HHHHHHHHHhCCC-CeEEEEecccChhhHHHHHHHhcCCCEEEE
Confidence 56666667 76654 5554432 23 4567788877432 588888888874333 33445577787776
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec-CCCCC-C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT-GNATG-D 199 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT-G~~~g-~ 199 (251)
....+ . ....+..+..+++|. ++.-|.. . + .+..+..+.. ..++|.+.+- |...+ .
T Consensus 257 H~ea~----~-----~ti~~ai~~akk~Gi---kvgVD~l-----n---p-~tp~e~i~~l-~~~vD~Vllht~vdp~~~ 314 (391)
T PRK13307 257 SGLAP----I-----STIEKAIHEAQKTGI---YSILDML-----N---V-EDPVKLLESL-KVKPDVVELHRGIDEEGT 314 (391)
T ss_pred eccCC----H-----HHHHHHHHHHHHcCC---EEEEEEc-----C---C-CCHHHHHHHh-hCCCCEEEEccccCCCcc
Confidence 42111 0 013445566666664 2211000 0 1 1222222221 2478887663 44333 2
Q ss_pred CCCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 200 PADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 200 ~~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+..+.++++|+. .+++|.+.|||+++++.++++ ||.+||||++.+.
T Consensus 315 ~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a 364 (391)
T PRK13307 315 EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKS 364 (391)
T ss_pred cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 3345788888885 478999999999999999886 9999999998653
No 95
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.06 E-value=9.5e-06 Score=76.94 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=92.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ ..+..+. +.+.+.++++++... .+++.++.|+. ..+|.+.|++-++.
T Consensus 224 e~aL~aGv-~~VQL--------ReK~ls~----~el~~la~~l~~l~~---~~gv~LiIND~---~dlAl~~gAdGVHL- 283 (437)
T PRK12290 224 ERLLPLGI-NTVQL--------RIKDPQQ----ADLEQQIIRAIALGR---EYNAQVFINDY---WQLAIKHQAYGVHL- 283 (437)
T ss_pred HHHHhCCC-CEEEE--------eCCCCCH----HHHHHHHHHHHHHHH---HhCCEEEEECH---HHHHHHcCCCEEEc-
Confidence 56678999 99974 2221122 234444455544433 34566666773 56676777766654
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
|-+.+- ....|+.++.. +++. .|.| +.++. ..|...++|++++ |-++.
T Consensus 284 -------GQeDL~------~~~aR~ilg~~--~iIG-----vStH------s~eEl-~~A~~~gaDYI~lGPIFpT~TK~ 336 (437)
T PRK12290 284 -------GQEDLE------EANLAQLTDAG--IRLG-----LSTH------GYYEL-LRIVQIQPSYIALGHIFPTTTKQ 336 (437)
T ss_pred -------ChHHcc------hhhhhhhcCCC--CEEE-----EecC------CHHHH-HHHhhcCCCEEEECCccCCCCCC
Confidence 333222 22234444431 1121 1222 34443 4444468888876 44443
Q ss_pred C-C-CCCHHHHHHHHhcC---------CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 G-D-PADVSQLMSVKNAV---------DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g-~-~~~~~~l~~vr~~~---------~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
. . +..++.++++++.. ++||++-|||+++|+.++++ |+|+.|=|+|.+.
T Consensus 337 ~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A 398 (437)
T PRK12290 337 MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRAITLA 398 (437)
T ss_pred CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcCCCEEEEehHhhcC
Confidence 2 2 22467777666544 69999999999999999997 9999999998753
No 96
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.05 E-value=3.8e-05 Score=70.34 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccEEEEEeeCChHHHHH----HHHHcCccceeccccccc-cc--CCCc-eeecC---cchhHH-HHHhcCCCcchhhhhh
Q psy9039 93 VPVGVQILSGCNKAALA----TAQAAGLDFIRAESFVFG-HM--ADEG-LMNAQ---AGPLLR-YRKQIGADNVLVFTDI 160 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~~~----ia~a~g~~Fir~~~~~~~-~~--~~~G-li~~d---a~e~~~-~r~~l~~~~i~i~a~v 160 (251)
.|++++++-|++ ..+. .+...|.+++..|.-|-. .+ ...| -+..+ ..++++ .++..+. ++.+
T Consensus 63 ~p~~vQl~g~~p-~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~-~~pV---- 136 (312)
T PRK10550 63 TLVRIQLLGQYP-QWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPA-HLPV---- 136 (312)
T ss_pred CcEEEEeccCCH-HHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCC-Ccce----
Confidence 599999999985 3322 334466778877643321 01 1111 12223 222222 2333321 2222
Q ss_pred HhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC----C-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc-
Q psy9039 161 KKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD----P-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 161 ~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~----~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~- 233 (251)
..|...-+ .......++++.++.+|+|.+.|.|..... + .+++.++++|+.+++||+..||| |++++.+++.
T Consensus 137 svKiR~g~-~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 137 TVKVRLGW-DSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred EEEEECCC-CCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 22322211 111224566666666899999998753222 2 26788999999999999999999 7999999883
Q ss_pred --CCEEEEeceEeecC
Q psy9039 234 --ADALIIGSHFKQGG 247 (251)
Q Consensus 234 --ADGvIVGS~~~~~g 247 (251)
||||.+|..+..|-
T Consensus 216 ~g~DgVmiGRg~l~nP 231 (312)
T PRK10550 216 TGCDAVMIGRGALNIP 231 (312)
T ss_pred cCCCEEEEcHHhHhCc
Confidence 99999999887653
No 97
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.05 E-value=2.1e-05 Score=72.65 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=56.3
Q ss_pred HHHHHHHhhhccccEEEecCCC---CCCC---------CCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNA---TGDP---------ADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~---~g~~---------~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIV 239 (251)
+.++++..+..|+|++.|+|.. .|.. ..++.+.++++.+ ++||+..||| |++++.+++. ||||.|
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmI 232 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMI 232 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 3444555555799999998742 1211 2467889999885 8999999999 7999999998 999999
Q ss_pred eceEeec
Q psy9039 240 GSHFKQG 246 (251)
Q Consensus 240 GS~~~~~ 246 (251)
|.++..|
T Consensus 233 GRa~l~n 239 (333)
T PRK11815 233 GRAAYHN 239 (333)
T ss_pred cHHHHhC
Confidence 9988765
No 98
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.02 E-value=0.00012 Score=64.40 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=55.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEece
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~ 242 (251)
....++++..+..|+|++-+.+...+...+++.+++++ +++||+..||| |.+++.+++. ||+|.||.+
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 34566777777789999877665555455778888887 68999999999 7999999985 999999998
No 99
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.02 E-value=6.4e-05 Score=65.85 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=103.0
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.+.|+ |.+-+==+ |-=|.....-|| +.++++|+.+++ +|+=+-++.+.+......+...|++.
T Consensus 22 ~~~~~~l~~~~~-~~~H~Dim-Dg~fvpn~~~G~-------~~v~~lr~~~~~-~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 22 ADEAQDVLSGGA-DWLHVDVM-DGHFVPNLSFGP-------PVVKSLRKHLPN-TFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred HHHHHHHHHcCC-CEEEEecc-cCccCCCcCcCH-------HHHHHHHhcCCC-CCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 344478889999 99865222 223544444554 456677777633 68888888776555555556677787
Q ss_pred eecccccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+-.....+ .. ..+.++..++.|. .+- +.+++.+ +.+++........+|.+.+-..+.
T Consensus 92 itvH~ea~----------~~~~~~~l~~ik~~G~-~~g----------val~p~t-~~e~l~~~l~~~~vD~Vl~m~v~p 149 (228)
T PTZ00170 92 FTFHIEAT----------EDDPKAVARKIREAGM-KVG----------VAIKPKT-PVEVLFPLIDTDLVDMVLVMTVEP 149 (228)
T ss_pred EEEeccCC----------chHHHHHHHHHHHCCC-eEE----------EEECCCC-CHHHHHHHHccchhhhHHhhhccc
Confidence 76542111 11 2345555555553 111 1111111 333332221112366653333333
Q ss_pred CC---C---CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GD---P---ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~---~---~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|. . ...++++++|+.. +..+.+-|||+++++.++.+ ||.+||||++-+.
T Consensus 150 G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 150 GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 32 1 1246777887765 57899999999999999886 9999999998653
No 100
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.01 E-value=4.9e-05 Score=69.61 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=59.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCC-C-C--CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhh-c--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT-G-D--PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM-T--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~-g-~--~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~-~--ADGvIVGS~~~~ 245 (251)
...+.++..+..|+|.+.++|... + . +..++.++++|+.+++||++.||| +++++.+++ . ||+|.+|+++..
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 455666666667999999987422 1 1 235688999999999999999999 799999998 3 999999999887
Q ss_pred cC
Q psy9039 246 GG 247 (251)
Q Consensus 246 ~g 247 (251)
|-
T Consensus 228 ~P 229 (319)
T TIGR00737 228 NP 229 (319)
T ss_pred CC
Confidence 64
No 101
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.99 E-value=0.00017 Score=62.43 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=52.4
Q ss_pred cHHHHHHHhhhccccEEEecC-----CCCCCC--CCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITG-----NATGDP--ADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG-----~~~g~~--~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..|...|+|+++++- ++.+.. ..++.++++++. .++||++-|||+++|+.+++. ++|+.|-|+|
T Consensus 111 ~~~e-~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~Ga~GiAvisai 189 (211)
T PRK03512 111 DDME-IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATGVGSIAVVSAI 189 (211)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcCCCEEEEhhHh
Confidence 3344 3444446888887743 343322 245677777666 589999999999999999996 9999999998
Q ss_pred eec
Q psy9039 244 KQG 246 (251)
Q Consensus 244 ~~~ 246 (251)
.+.
T Consensus 190 ~~~ 192 (211)
T PRK03512 190 TQA 192 (211)
T ss_pred hCC
Confidence 753
No 102
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.00014 Score=62.36 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=55.1
Q ss_pred cHHHHHHHhhhccccEEEec-----C-CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIIT-----G-NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VT-----G-~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.-+.+..|...|+|-++.| + ......++.++++++.+ .+.||++=|.+ ||+++++.+. |++++|||++-
T Consensus 135 St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 135 STFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccC
Confidence 33445667777799998775 2 22223456788888888 78999999999 7999999997 99999999985
Q ss_pred e
Q psy9039 245 Q 245 (251)
Q Consensus 245 ~ 245 (251)
+
T Consensus 214 R 214 (229)
T COG3010 214 R 214 (229)
T ss_pred C
Confidence 4
No 103
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.98 E-value=0.00013 Score=66.21 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||+|.|||++...|
T Consensus 231 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~g 279 (294)
T cd04741 231 GNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEG 279 (294)
T ss_pred HHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcC
Confidence 5567888888 4999999999 7899998885 99999999998643
No 104
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.96 E-value=0.00023 Score=62.26 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=104.8
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+ ++++|+. ++ .|+=+-++...|...+..-...|++
T Consensus 19 ~~~i~~l~~~g~-d~lHiDimDG-~FVPN~tfg~~~-------i~~lr~~~~~--~~~dvHLMv~~P~~~i~~~~~~gad 87 (223)
T PRK08745 19 GEEVDNVLKAGA-DWVHFDVMDN-HYVPNLTIGPMV-------CQALRKHGIT--APIDVHLMVEPVDRIVPDFADAGAT 87 (223)
T ss_pred HHHHHHHHHcCC-CEEEEecccC-ccCCCcccCHHH-------HHHHHhhCCC--CCEEEEeccCCHHHHHHHHHHhCCC
Confidence 344477888999 9987532223 365555566654 5567776 46 6888888887654444444446777
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+-.... . .....+.+++-+++|. |.|+.++ +.-+++.+..-. ..+|.+.+-....
T Consensus 88 ~I~~H~E----a------~~~~~~~l~~Ir~~g~-----------k~Glaln-P~T~~~~i~~~l--~~vD~VlvMtV~P 143 (223)
T PRK08745 88 TISFHPE----A------SRHVHRTIQLIKSHGC-----------QAGLVLN-PATPVDILDWVL--PELDLVLVMSVNP 143 (223)
T ss_pred EEEEccc----C------cccHHHHHHHHHHCCC-----------ceeEEeC-CCCCHHHHHHHH--hhcCEEEEEEECC
Confidence 7665421 1 1234556677777775 1222221 112333331111 2578776654444
Q ss_pred CCC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. ...++++++|+.. +..+-+-|||+.+++.++.+ ||.+|+||++-..
T Consensus 144 Gf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~ 205 (223)
T PRK08745 144 GFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNA 205 (223)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCC
Confidence 432 2346677666642 46799999999999999986 9999999998643
No 105
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.94 E-value=0.00015 Score=67.12 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=56.0
Q ss_pred HHHHHhhhccccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
++++..+..|+|.+-||+..... ....+..+++|+++++||++.|||+++.+.++++ ||.|-+|..|+.|-.|
T Consensus 245 ~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~ 323 (338)
T cd02933 245 YLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDL 323 (338)
T ss_pred HHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCH
Confidence 44444444578999886543321 2245778899999999999999999999999984 9999999999887544
No 106
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.94 E-value=9.4e-05 Score=68.20 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCC--chH---HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAES--GPE---ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~--gp~---i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+.+.++|+ |+|+|---.| -|++..-.| |-. -..-...+++++|+.+++.+|+++
T Consensus 148 eI~~ii~~~~~aA~~a~~aGf-DgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~v 226 (336)
T cd02932 148 EIAEVVDAFVAAARRAVEAGF-DVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFV 226 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEE
Confidence 467788888889998999999 9999821112 255544333 211 122233577888887743256665
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
-+ |+ .++... |+ +.. ...+
T Consensus 227 ri--~~------------~~~~~~-----------g~---~~~---------------------------------e~~~ 245 (336)
T cd02932 227 RI--SA------------TDWVEG-----------GW---DLE---------------------------------DSVE 245 (336)
T ss_pred EE--cc------------cccCCC-----------CC---CHH---------------------------------HHHH
Confidence 43 22 012110 00 000 1112
Q ss_pred HHHHhhhccccEEEecCC-CCC-----C-C-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIITGN-ATG-----D-P-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~-~~g-----~-~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+.+++|.+-|++. .+. . + ...+..+++|+.+++||+.++|| +++++.+++. ||.|.+|.+++.
T Consensus 246 ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 246 LAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 222222345666655421 111 1 1 12467788999999999999999 7999999994 999999999988
Q ss_pred cCee
Q psy9039 246 GGRT 249 (251)
Q Consensus 246 ~g~~ 249 (251)
|-.|
T Consensus 326 dP~~ 329 (336)
T cd02932 326 NPYW 329 (336)
T ss_pred CccH
Confidence 7543
No 107
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.00028 Score=61.32 Aligned_cols=174 Identities=16% Similarity=0.265 Sum_probs=110.8
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccce
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFI 119 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fi 119 (251)
++++.+.++|+ |.+-+-=+-| =|...+.-||.+.++ +|+.++ .|+=+-++...+...+..-...|++++
T Consensus 20 ~el~~~~~aga-d~iH~DVMDg-hFVPNiTfGp~~v~~-------l~~~t~--~p~DvHLMV~~p~~~i~~fa~agad~I 88 (220)
T COG0036 20 EELKALEAAGA-DLIHIDVMDG-HFVPNITFGPPVVKA-------LRKITD--LPLDVHLMVENPDRYIEAFAKAGADII 88 (220)
T ss_pred HHHHHHHHcCC-CEEEEeccCC-CcCCCcccCHHHHHH-------HhhcCC--CceEEEEecCCHHHHHHHHHHhCCCEE
Confidence 34478889999 9997643333 477777788877554 555666 688888888775444444445678887
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
-.... -.+...+.+.+-+++|. |.|+.+ .+.-+++.+-.-. .-+|.+-+-....|.
T Consensus 89 t~H~E----------~~~~~~r~i~~Ik~~G~-----------kaGv~l-nP~Tp~~~i~~~l--~~vD~VllMsVnPGf 144 (220)
T COG0036 89 TFHAE----------ATEHIHRTIQLIKELGV-----------KAGLVL-NPATPLEALEPVL--DDVDLVLLMSVNPGF 144 (220)
T ss_pred EEEec----------cCcCHHHHHHHHHHcCC-----------eEEEEE-CCCCCHHHHHHHH--hhCCEEEEEeECCCC
Confidence 76521 12345667777777776 222222 1112332221001 247777664443333
Q ss_pred ------CCCHHHHHHHHhcCC----CCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 200 ------PADVSQLMSVKNAVD----LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 200 ------~~~~~~l~~vr~~~~----~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+..+++++++|+..+ +-+=+=|||+.+|+.++.. ||-++.||++..+.+
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d 205 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADD 205 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence 223577888887653 3577899999999999995 999999999987654
No 108
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.93 E-value=0.0001 Score=71.51 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=94.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ +.|.+ . ++..+.. .+...++++++... ..++.++.|+. ..+|...|++-++.
T Consensus 314 ~~~l~~Gv-~~vql----R----~k~~~~~----~~~~~a~~l~~~~~---~~~~~liind~---~~lA~~~~adGvHl- 373 (502)
T PLN02898 314 RAAIEGGA-TIVQL----R----EKEAETR----EFIEEAKACLAICR---SYGVPLLINDR---VDVALACDADGVHL- 373 (502)
T ss_pred HHHHHcCC-CEEEE----c----cCCCCHH----HHHHHHHHHHHHHH---HhCCEEEEcCh---HHHHHhcCCCEEEe-
Confidence 44668899 99985 2 2211222 33444455544433 23455666663 56666667666553
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~~~ 197 (251)
+...+ .....|+.++.. +++. .|.| +..+ +..|...|+|++.+ |.++.
T Consensus 374 -------~~~d~------~~~~~r~~~~~~--~~iG-----~S~h------~~~e-~~~a~~~gadyi~~gpif~t~tk~ 426 (502)
T PLN02898 374 -------GQSDM------PVRLARSLLGPG--KIIG-----VSCK------TPEQ-AEQAWKDGADYIGCGGVFPTNTKA 426 (502)
T ss_pred -------ChHhc------CHHHHHHhcCCC--CEEE-----EeCC------CHHH-HHHHhhcCCCEEEECCeecCCCCC
Confidence 22211 123445555432 2221 1222 3333 45555568888764 55554
Q ss_pred CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CC---EEEEeceEee
Q psy9039 198 GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--AD---ALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--AD---GvIVGS~~~~ 245 (251)
+.++ .++.++++++..++||++-|||+++|+.+++. +| |+.|+|++.+
T Consensus 427 ~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 427 NNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhc
Confidence 4333 57888888888899999999999999999986 77 9999999864
No 109
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.91 E-value=0.00032 Score=61.67 Aligned_cols=180 Identities=14% Similarity=0.043 Sum_probs=106.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-+..+. +..+ . ...+++++.+... .|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~ga-~~lhivDLd~a-~~~~-----~----n~~~i~~i~~~~~--~~v~vGGGIrs-~e~~~~~l~~Ga~kvvig 102 (232)
T PRK13586 37 SKLYNEGY-TRIHVVDLDAA-EGVG-----N----NEMYIKEISKIGF--DWIQVGGGIRD-IEKAKRLLSLDVNALVFS 102 (232)
T ss_pred HHHHHCCC-CEEEEEECCCc-CCCc-----c----hHHHHHHHHhhCC--CCEEEeCCcCC-HHHHHHHHHCCCCEEEEC
Confidence 56778899 99988666554 2221 1 2367777776432 25433322222 333444444566655432
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC----CCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS----HAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~----~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
.. ...+.+.+.+..+++|...+-+==|+. +.+. -+.....++.+.++..+.+|+..+++|--...
T Consensus 103 ----t~------a~~~p~~~~~~~~~~g~~~ivvslD~~-~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~d 171 (232)
T PRK13586 103 ----TI------VFTNFNLFHDIVREIGSNRVLVSIDYD-NTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNE 171 (232)
T ss_pred ----ch------hhCCHHHHHHHHHHhCCCCEEEEEEcC-CCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccc
Confidence 11 112344555667777654332211221 1110 01123345667777777778988988875332
Q ss_pred ---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCee
Q psy9039 199 ---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGRT 249 (251)
Q Consensus 199 ---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~~ 249 (251)
..++.++++++++. ..|++++||+ +.+++.++.+ +||++|||+|- .|++
T Consensus 172 Gt~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly-~g~~ 226 (232)
T PRK13586 172 GTTKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY-LGKL 226 (232)
T ss_pred ccCcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh-cCcc
Confidence 24567889888876 5679999999 6799998886 99999999986 4443
No 110
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.90 E-value=9.4e-05 Score=65.42 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=88.5
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
-+|+... -.+++-.+.||..|.++..+.|-.+...++ |.+++|. ..++..+..||.++-.=|+
T Consensus 105 ~~wIKLE-----Vi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl---------PY~~~D~---v~a~rLed~Gc~aVMPlgs 167 (267)
T CHL00162 105 NNFVKLE-----VISDPKYLLPDPIGTLKAAEFLVKKGFTVL---------PYINADP---MLAKHLEDIGCATVMPLGS 167 (267)
T ss_pred CCeEEEE-----EeCCCcccCCChHHHHHHHHHHHHCCCEEe---------ecCCCCH---HHHHHHHHcCCeEEeeccC
Confidence 5788863 355777889999999999999887777776 4333332 2456666678988877665
Q ss_pred CCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 196 ATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 196 ~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
--|. -.+...|+.+++..++||+++.|| +++++.+.++ |||+-+.|++.+-.+
T Consensus 168 PIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~d 226 (267)
T CHL00162 168 PIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKN 226 (267)
T ss_pred cccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCC
Confidence 3332 234677888999999999999999 7999999997 999999999987554
No 111
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.90 E-value=3.8e-05 Score=71.00 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=56.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC--------------CC-C------CCHHHHHHHHhcC--CCCEEEecCC-ChHhHH
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT--------------GD-P------ADVSQLMSVKNAV--DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~--------------g~-~------~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~ 229 (251)
.+.++++.+...|+|+++.+.+-. |. . ..++.+.++++.. ++|++.-||| |++++.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~ 304 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDAL 304 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 578888888778999998765321 11 0 0135677787776 6999999999 799999
Q ss_pred Hhhc--CCEEEEeceEeecC
Q psy9039 230 HYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~~g 247 (251)
+++. ||.|.|||++..+|
T Consensus 305 e~l~aGA~~Vqv~ta~~~~G 324 (335)
T TIGR01036 305 EKIRAGASLLQIYSGFIYWG 324 (335)
T ss_pred HHHHcCCcHHHhhHHHHHhC
Confidence 9985 99999999998765
No 112
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.90 E-value=1.3e-05 Score=68.01 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=50.8
Q ss_pred HHHHHHHhhhccccEEEecC-----CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITG-----NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG-----~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.-+.+..|...|+|.++.|= ...+..++.++++++++. ++||++=|+| ||+++++.++ |+.|+|||++-
T Consensus 101 t~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 34556777778999998853 333344567899999886 8999999999 7999999997 99999999874
No 113
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.89 E-value=0.00012 Score=64.93 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=110.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-|-++.. |... ...-++++|+.++ .|+--.=+.-+ .+++..|+..|++.+=.-
T Consensus 68 ~~y~~~GA-~aISVlTe~~--~F~G----------s~~~l~~v~~~v~--~PvL~KDFIid-~~QI~ea~~~GADavLLI 131 (247)
T PRK13957 68 KTYETLGA-SAISVLTDQS--YFGG----------SLEDLKSVSSELK--IPVLRKDFILD-EIQIREARAFGASAILLI 131 (247)
T ss_pred HHHHHCCC-cEEEEEcCCC--cCCC----------CHHHHHHHHHhcC--CCEEeccccCC-HHHHHHHHHcCCCEEEeE
Confidence 55889999 9998755442 2221 2355677888877 78777666655 678888888888876432
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
+ .++.+ +..++.++.+.+|.+-+-.+ ...+.++.+...+++.++|--..-. ..
T Consensus 132 ~---------~~L~~~~l~~l~~~a~~lGle~LVEV----------------h~~~El~~a~~~ga~iiGINnRdL~t~~ 186 (247)
T PRK13957 132 V---------RILTPSQIKSFLKHASSLGMDVLVEV----------------HTEDEAKLALDCGAEIIGINTRDLDTFQ 186 (247)
T ss_pred H---------hhCCHHHHHHHHHHHHHcCCceEEEE----------------CCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 1 11222 36678888888887432221 1233345555568999998765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +..++.-||| |++++..+.. +||+.||++|++..+
T Consensus 187 vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~~davLvG~~lm~~~d 238 (247)
T PRK13957 187 IHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKLVDAALIGTYFMEKKD 238 (247)
T ss_pred ECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHhCCEEEECHHHhCCCC
Confidence 4555556666554 5677888999 7999998877 999999999998643
No 114
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.88 E-value=3.7e-05 Score=67.03 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=53.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC---CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT---GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~---g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+..+..+....+++ .+++|--.. ...++.++++++++.+++||+++||| |.+++.++.. |||+++||+|..+
T Consensus 142 ~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 142 SLEEVRDFLNSFDY-GLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred cHHHHHHHHHhcCC-EEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 34444444444566 676665322 23457899999999999999999999 7899998885 9999999998553
No 115
>PRK08005 epimerase; Validated
Probab=97.88 E-value=0.00029 Score=61.06 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=104.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+ |-=|...+.-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.
T Consensus 16 ~~el~~l~~~g~-d~lHiDvM-DG~FVPN~tfG~~~-------i~~l~~~t~--~~~DvHLMv~~P~~~i~~~~~~gad~ 84 (210)
T PRK08005 16 AEALTALHDAPL-GSLHLDIE-DTSFINNITFGMKT-------IQAVAQQTR--HPLSFHLMVSSPQRWLPWLAAIRPGW 84 (210)
T ss_pred HHHHHHHHHCCC-CEEEEecc-CCCcCCccccCHHH-------HHHHHhcCC--CCeEEEeccCCHHHHHHHHHHhCCCE
Confidence 344477888999 99865322 22355555556654 556676666 68888888876544444434456777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+-.... . ..+..+.+++-++.|. . .|+.+ .+.-+++.+..-. ..+|.+.+-....|
T Consensus 85 It~H~E----a------~~~~~~~l~~Ik~~G~-k----------~GlAl-nP~Tp~~~i~~~l--~~vD~VlvMsV~PG 140 (210)
T PRK08005 85 IFIHAE----S------VQNPSEILADIRAIGA-K----------AGLAL-NPATPLLPYRYLA--LQLDALMIMTSEPD 140 (210)
T ss_pred EEEccc----C------ccCHHHHHHHHHHcCC-c----------EEEEE-CCCCCHHHHHHHH--HhcCEEEEEEecCC
Confidence 665421 1 1234456677777775 1 12221 1112333332111 25787766554444
Q ss_pred CC------CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 199 DP------ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 199 ~~------~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.. ...++++++|+.. ...+-+=|||+.+|+.++.+ ||.+++||++-.+
T Consensus 141 f~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~ 197 (210)
T PRK08005 141 GRGQQFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTT 197 (210)
T ss_pred CccceecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCC
Confidence 32 2246777777664 34799999999999999886 9999999998753
No 116
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.87 E-value=3.6e-05 Score=68.31 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=58.6
Q ss_pred cHHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...+.++....+|+|.+.++.-. ++...+.+.++++++.+++||.+|||| +.+++.+++. ||+++|||++.++-
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNP 110 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhCh
Confidence 34555665555789999887643 233446788999999999999999999 6899999996 99999999987764
No 117
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.85 E-value=0.00015 Score=67.47 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCCh----HHH-HHHHHHcCccceecccccccccC-CCceeecCc----chhHHHHHhc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILSGCN----KAA-LATAQAAGLDFIRAESFVFGHMA-DEGLMNAQA----GPLLRYRKQI 149 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~N~~----~~~-~~ia~a~g~~Fir~~~~~~~~~~-~~Gli~~da----~e~~~~r~~l 149 (251)
...+.+|+..++ .|+..|+..+.. ... .......+++.+..+..+..... ..|- .+. +.+...++.+
T Consensus 109 ~~~~~vr~~~p~-~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~--~~f~~~le~i~~i~~~~ 185 (352)
T PRK05437 109 DSFSVVRKVAPD-GLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGD--RDFRGWLDNIAEIVSAL 185 (352)
T ss_pred HHHHHHHHHCCC-ceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCc--ccHHHHHHHHHHHHHhh
Confidence 445667887755 599999988642 111 12222345666665422211111 1111 111 2233344433
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-----------------------CCCCHHHH
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-----------------------DPADVSQL 206 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-----------------------~~~~~~~l 206 (251)
+ +.++. |-. . .. ...+.++.....|+|++.|+|.. | ..+..+.|
T Consensus 186 ~---vPViv----K~~-g---~g-~s~~~a~~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l 252 (352)
T PRK05437 186 P---VPVIV----KEV-G---FG-ISKETAKRLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSL 252 (352)
T ss_pred C---CCEEE----EeC-C---CC-CcHHHHHHHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHH
Confidence 2 22321 110 0 01 12455666666799999998842 2 01223567
Q ss_pred HHHHhc-CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 207 MSVKNA-VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 207 ~~vr~~-~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++. .++||++-||| ++.++.+++. ||+|.+|+.|.+.
T Consensus 253 ~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 253 LEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 777777 58999999999 7899888885 9999999988653
No 118
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.84 E-value=4.6e-05 Score=67.87 Aligned_cols=165 Identities=17% Similarity=0.184 Sum_probs=103.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.++|+ ++|-|-.+- .|... ...-++++|+.++ +|+--.=|.-+ .+++..|++.|++-+=.-
T Consensus 75 ~~y~~~GA-~aiSVlTe~--~~F~G----------s~~dL~~v~~~~~--~PvL~KDFIid-~~QI~eA~~~GADaVLLI 138 (254)
T PF00218_consen 75 KAYEEAGA-AAISVLTEP--KFFGG----------SLEDLRAVRKAVD--LPVLRKDFIID-PYQIYEARAAGADAVLLI 138 (254)
T ss_dssp HHHHHTT--SEEEEE--S--CCCHH----------HHHHHHHHHHHSS--S-EEEES---S-HHHHHHHHHTT-SEEEEE
T ss_pred HHHHhcCC-CEEEEECCC--CCCCC----------CHHHHHHHHHHhC--CCcccccCCCC-HHHHHHHHHcCCCEeehh
Confidence 66889999 999885443 34332 4566788888888 78766555445 678888888888876542
Q ss_pred cccccccCCCceeecC-cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNAQ-AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~d-a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-.++.++ ..++..+.+.+|.+-+-.+ | ..+..+.|...+++.++|-...-. ..
T Consensus 139 ---------~~~L~~~~l~~l~~~a~~lGle~lVEV---------h-------~~~El~~al~~~a~iiGINnRdL~tf~ 193 (254)
T PF00218_consen 139 ---------AAILSDDQLEELLELAHSLGLEALVEV---------H-------NEEELERALEAGADIIGINNRDLKTFE 193 (254)
T ss_dssp ---------GGGSGHHHHHHHHHHHHHTT-EEEEEE---------S-------SHHHHHHHHHTT-SEEEEESBCTTTCC
T ss_pred ---------HHhCCHHHHHHHHHHHHHcCCCeEEEE---------C-------CHHHHHHHHHcCCCEEEEeCccccCcc
Confidence 1122223 3678888999987332221 1 233345555668999999765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+.+...++.... +..++.-+|| +++++..+.. +||+.||++|++..+
T Consensus 194 vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d 246 (254)
T PF00218_consen 194 VDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPD 246 (254)
T ss_dssp BHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSS
T ss_pred cChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 3445555666554 5889999999 7999999986 999999999988653
No 119
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.83 E-value=2.7e-05 Score=71.87 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 204 SQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
+..+++|+.+++||+++++| +++++.+++. ||.|-+|-.|+.|-.|
T Consensus 282 ~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~ 331 (338)
T cd04733 282 EFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDL 331 (338)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccH
Confidence 56678999999999999999 6999999984 9999999988877543
No 120
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.82 E-value=0.00018 Score=60.04 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCC-hHhHHHhhc--CCEEEEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVT-SDNVEHYMT--ADALIIG 240 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~-~~~v~~~~~--ADGvIVG 240 (251)
+.+.++.+...++|++-.+........+.+.++++++.. ++|+++.+|++ ++++.+.+. |+|+++|
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 333333444468999877654333334677888888776 67999999995 888888885 9999876
No 121
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.79 E-value=0.00034 Score=66.42 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=88.0
Q ss_pred HHHHHhCCCCccEEEEEeeC-ChHHH---HHHHHHcCccceecccccccccCC--Cce-eecC---cchhHHHHHhcCCC
Q psy9039 83 AEIRKVLPPSVPVGVQILSG-CNKAA---LATAQAAGLDFIRAESFVFGHMAD--EGL-MNAQ---AGPLLRYRKQIGAD 152 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N-~~~~~---~~ia~a~g~~Fir~~~~~~~~~~~--~Gl-i~~d---a~e~~~~r~~l~~~ 152 (251)
+++++..++ .|+.+++.-+ ....- .......|++++..|..|-..... .|. +.-+ ..++.+.-++. -
T Consensus 91 ~~~~~~~~~-~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~--~ 167 (420)
T PRK08318 91 RRVKRDYPD-RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG--S 167 (420)
T ss_pred HHHHhhCCC-ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc--c
Confidence 345444433 4888887765 32111 122233568899987544321111 111 1122 22233222221 1
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC--------------------CC--C-C--CC----CH
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN--------------------AT--G-D--PA----DV 203 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~--------------------~~--g-~--~~----~~ 203 (251)
.+.++. |-+ | ....+.++++.++..|+|++..+.+ ++ | . ++ .+
T Consensus 168 ~~Pv~v----Kl~-p---~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l 239 (420)
T PRK08318 168 RLPVIV----KLT-P---NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIAL 239 (420)
T ss_pred CCcEEE----EcC-C---CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHH
Confidence 233332 221 1 1124677888777789999884221 11 1 1 11 25
Q ss_pred HHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||+|.|||++..+|
T Consensus 240 ~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g 289 (420)
T PRK08318 240 NMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG 289 (420)
T ss_pred HHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCC
Confidence 7788898876 7999999999 7899888885 99999999998865
No 122
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.76 E-value=7.3e-05 Score=65.64 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=58.8
Q ss_pred cHHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
...++++.....|+|.+.++.-. ++.+.+.+.++++++.+++||+++||| +.+++.+++. ||++++||.+.++-
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p 107 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENP 107 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhCh
Confidence 34556666666789977776543 233456788999999999999999999 6899999985 99999999988764
Q ss_pred e
Q psy9039 248 R 248 (251)
Q Consensus 248 ~ 248 (251)
.
T Consensus 108 ~ 108 (243)
T cd04731 108 E 108 (243)
T ss_pred H
Confidence 3
No 123
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.76 E-value=0.00035 Score=65.75 Aligned_cols=171 Identities=13% Similarity=0.181 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecC-CC-------CccccCCCch-----HHHHHHHHHHHHHHHhCCCCccEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMH-DV-------PYVLEAESGP-----EITANMTRLCAEIRKVLPPSVPVG 96 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~-~~-------Pf~~p~~~gp-----~i~aa~~~~i~~vr~~~~~~~P~G 96 (251)
.++.+++.-.+.|+..+++|+ |+|+|---. |. |++....|.+ -...-+.++++++|+.+++..|++
T Consensus 144 eI~~ii~~f~~AA~ra~~AGf-DgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~ 222 (382)
T cd02931 144 EVETFVGKFGESAVIAKEAGF-DGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVS 222 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEE
Confidence 467778888888888899999 999984322 43 4443333321 122333468899999875335777
Q ss_pred EEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHH
Q psy9039 97 VQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDIT 176 (251)
Q Consensus 97 vn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~ 176 (251)
+=+-.. +++... ..+- .+. ++. . +.|. +. +...
T Consensus 223 vri~~~--------------~~~~~~--------~~~~-~~~-~~~-------~------------~~g~---~~-e~~~ 255 (382)
T cd02931 223 LRYSVK--------------SYIKDL--------RQGA-LPG-EEF-------Q------------EKGR---DL-EEGL 255 (382)
T ss_pred EEEech--------------hhcccc--------cccc-ccc-ccc-------c------------cCCC---CH-HHHH
Confidence 764211 121100 0000 000 000 0 0000 00 1123
Q ss_pred HHHHHhhhccccEEEecCCCCCC-----C-----CC--HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGD-----P-----AD--VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~-----~-----~~--~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
++++..+..|+|.+-||+..... + .. ....+++|+.+++||++.||| +++++.++++ ||.|-+|
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeec
Confidence 34444444588999888643211 1 11 356778999999999999999 7899999984 9999999
Q ss_pred ceEeecCe
Q psy9039 241 SHFKQGGR 248 (251)
Q Consensus 241 S~~~~~g~ 248 (251)
-.|..|-.
T Consensus 336 R~~ladP~ 343 (382)
T cd02931 336 RPLLADPD 343 (382)
T ss_pred hHhHhCcc
Confidence 99887744
No 124
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.74 E-value=7.7e-05 Score=66.01 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=58.5
Q ss_pred HHHHHHHhhhccccEEEecCCC---CCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 175 ITETAKAASFFLSDGLIITGNA---TGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~---~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
..++++....+|++.+.++.-. ++...+++.++++++.+++||+++||| +.+++.+++. ||++++||.+.++-
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p 110 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANP 110 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCc
Confidence 3455666556789998887753 234456789999999999999999999 6899999986 99999999887653
No 125
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.73 E-value=9.4e-05 Score=64.28 Aligned_cols=72 Identities=24% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..++++.-..+|+|.+.++. ...+...+.+.++++++.+++||++|+|| +.+++++++. ||++++||++..+
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~ 109 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKN 109 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 34444443336888887765 33344567889999999999999999999 6899999996 9999999998765
No 126
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.72 E-value=0.00048 Score=63.85 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+.++++|+.+++||++.||| +++.+.++++ ||+|-+|-.++.|-.
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~ 323 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCcc
Confidence 467788999999999999999 7899999985 999999998877644
No 127
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00076 Score=59.41 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=112.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+++-|+ .-+-+-...|- |. -+|. ...+++++.+.++ .|+=+-.=.++ .....-....|.+.+-..
T Consensus 38 ~~~~~~Ga-~~lHlVDLdgA-~~----g~~~----n~~~i~~i~~~~~--~~vQvGGGIRs-~~~v~~ll~~G~~rViiG 104 (241)
T COG0106 38 KKWSDQGA-EWLHLVDLDGA-KA----GGPR----NLEAIKEILEATD--VPVQVGGGIRS-LEDVEALLDAGVARVIIG 104 (241)
T ss_pred HHHHHcCC-cEEEEeecccc-cc----CCcc----cHHHHHHHHHhCC--CCEEeeCCcCC-HHHHHHHHHCCCCEEEEe
Confidence 55666777 76655322222 10 1121 3356677777777 67666544444 344444455666655542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh----ccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK----HSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k----~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+ ...-+...+.+.++++| +.|-+==|.... +|.. ..++..+.+.++.-+.+|+..++.|-....
T Consensus 105 ----t------~av~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~-e~s~~~~~~l~~~~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 105 ----T------AAVKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQ-EDSGVELEELAKRLEEVGLAHILYTDISRD 172 (241)
T ss_pred ----c------ceecCHHHHHHHHHHcC-CcEEEEEEccCCcccccccc-ccccCCHHHHHHHHHhcCCCeEEEEecccc
Confidence 1 11445677888899998 555442222221 1221 234456677766666678999999885433
Q ss_pred C---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecC
Q psy9039 199 D---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGG 247 (251)
Q Consensus 199 ~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g 247 (251)
. .++.+++.++.+.+++||++.||| +-++++.+.. .+|+|||++|-.+.
T Consensus 173 Gtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~ 228 (241)
T COG0106 173 GTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGK 228 (241)
T ss_pred cccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCC
Confidence 2 356788999999999999999999 5688887764 79999999996543
No 128
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.71 E-value=0.0003 Score=71.63 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=49.3
Q ss_pred cccEEEe-----cCCCCCCCC--CHHHHHHHHhcCC---CCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 186 LSDGLII-----TGNATGDPA--DVSQLMSVKNAVD---LPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 186 ~~D~v~V-----TG~~~g~~~--~~~~l~~vr~~~~---~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|+|++++ |.++.+..+ .++.++++++.++ +||++-|||+++|+.++.+ |||+.|.|+|.+
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhC
Confidence 4898876 445555433 5688998888887 9999999999999999996 999999999864
No 129
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.69 E-value=0.00052 Score=61.34 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=109.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ ..|.|-...+ ..+ . ...+++++++ ++ .|+-+=.=.. .+...-....|++-+-.+
T Consensus 50 ~~~~~~Ga-~~lHvVDLdg---g~~-----~----n~~~i~~i~~-~~--~~vqvGGGIR--~e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 50 EMYKRDGL-TGGHVIMLGA---DDA-----S----LAAALEALRA-YP--GGLQVGGGVN--SENAMSYLDAGASHVIVT 111 (262)
T ss_pred HHHHHCCC-CEEEEEECCC---CCc-----c----cHHHHHHHHh-CC--CCEEEeCCcc--HHHHHHHHHcCCCEEEEc
Confidence 66788999 9998765543 111 1 2556777776 66 5665543222 233444445666665543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhh--------ccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKK--------HSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k--------~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
. .+-.++-+ +..-+.+..+++|...|-+--|+..+ +|-. ..++.++.+.+......+++.+++|-
T Consensus 112 T----~Av~~~~~--~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~-~~t~~~~~e~~~~~~~~g~~eii~Td 184 (262)
T PLN02446 112 S----YVFRDGQI--DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQ-KFSDLAVDEETLEFLAAYCDEFLVHG 184 (262)
T ss_pred h----HHHhCCCC--CHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCc-ccCCCCHHHHHHHHHHhCCCEEEEEE
Confidence 1 11111212 14455667777775444332233211 1211 12344555554444445799999988
Q ss_pred CCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc----CCEEEEeceE-eecCee
Q psy9039 195 NAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT----ADALIIGSHF-KQGGRT 249 (251)
Q Consensus 195 ~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~-~~~g~~ 249 (251)
... | ..++.++++++++.+++||++.||| +.+++.++.. ..|+|||++| .-+|++
T Consensus 185 I~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~ 248 (262)
T PLN02446 185 VDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNL 248 (262)
T ss_pred EcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCc
Confidence 533 3 2457899999999999999999999 6899988875 3899999998 244443
No 130
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.69 E-value=0.00042 Score=64.91 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCccceeccccc--ccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHh
Q psy9039 105 KAALATAQAAGLDFIRAESFV--FGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAA 182 (251)
Q Consensus 105 ~~~~~ia~a~g~~Fir~~~~~--~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a 182 (251)
......+...|++++-....+ ..+.+..+ +...+.+..++. ++++++ .+....+.++.+
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~----~~~~i~~~ik~~---~ipVIa------------G~V~t~e~A~~l 204 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEG----EPLNLKEFIYEL---DVPVIV------------GGCVTYTTALHL 204 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcC----CHHHHHHHHHHC---CCCEEE------------eCCCCHHHHHHH
Confidence 344556667888888763110 00111111 233345555554 345542 112223445555
Q ss_pred hhccccEEEecCCCCCC-----------CCCHHHHHHHHhc----------CCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 183 SFFLSDGLIITGNATGD-----------PADVSQLMSVKNA----------VDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~-----------~~~~~~l~~vr~~----------~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
...|||++.+ |...|. -+.+..+.++.+. .++||++.||| ++.++.+.+. ||+|.
T Consensus 205 ~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm 283 (368)
T PRK08649 205 MRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVM 283 (368)
T ss_pred HHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeec
Confidence 5579999977 422220 1223334443321 15899999999 7899888886 99999
Q ss_pred EeceEee
Q psy9039 239 IGSHFKQ 245 (251)
Q Consensus 239 VGS~~~~ 245 (251)
+||.|..
T Consensus 284 ~Gs~fa~ 290 (368)
T PRK08649 284 LGSPLAR 290 (368)
T ss_pred ccchhcc
Confidence 9999975
No 131
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.68 E-value=0.00048 Score=63.29 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=55.4
Q ss_pred HHHHHHhhhccccEEEecCCCC---CCC---------CCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc-CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITGNAT---GDP---------ADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT-ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~---g~~---------~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~-ADGvIVG 240 (251)
.+.++.++..|+|++.|.|... |.. .+++.+.++|+.+ ++||+..||| |.+++.+.+. ||||.+|
T Consensus 144 ~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMig 223 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVG 223 (318)
T ss_pred HHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEEC
Confidence 3445555557999999988642 221 1457788999887 8999999999 7999999998 9999999
Q ss_pred ceEeec
Q psy9039 241 SHFKQG 246 (251)
Q Consensus 241 S~~~~~ 246 (251)
..+..+
T Consensus 224 Rgal~n 229 (318)
T TIGR00742 224 REAYEN 229 (318)
T ss_pred HHHHhC
Confidence 987665
No 132
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.68 E-value=0.00034 Score=64.76 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC---------CCccccCCC---ch-H-HHHHHHHHHHHHHHhCCCCccE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD---------VPYVLEAES---GP-E-ITANMTRLCAEIRKVLPPSVPV 95 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~---------~Pf~~p~~~---gp-~-i~aa~~~~i~~vr~~~~~~~P~ 95 (251)
.++.+++.-.+.|+.+.++|+ |+|+| ..+ -|++....| |. + ...=..++++++|+..+ .|+
T Consensus 136 eI~~ii~~f~~aA~~a~~aGf-DgVei--h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~--~~v 210 (337)
T PRK13523 136 QIKETVLAFKQAAVRAKEAGF-DVIEI--HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWD--GPL 210 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEE--ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcC--CCe
Confidence 467888888888898999999 99998 222 365533222 21 1 11222346777777764 466
Q ss_pred EEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccH
Q psy9039 96 GVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDI 175 (251)
Q Consensus 96 Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i 175 (251)
++=+ |. .++.. .|+ + .+..
T Consensus 211 ~vRi--s~------------~d~~~-----------~G~---~---------------------------------~~e~ 229 (337)
T PRK13523 211 FVRI--SA------------SDYHP-----------GGL---T---------------------------------VQDY 229 (337)
T ss_pred EEEe--cc------------cccCC-----------CCC---C---------------------------------HHHH
Confidence 6543 21 01211 010 0 0111
Q ss_pred HHHHHHhhhccccEEEecCCCCC----C-CC--CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----D-PA--DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----~-~~--~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
.++++..+..|+|.+-||+.... . .+ ..+..+++|+.+++||++.|+| +++.+.+++. ||.|-+|-.++
T Consensus 230 ~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~i 309 (337)
T PRK13523 230 VQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELL 309 (337)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHH
Confidence 22333333357888888775311 0 11 3567788999999999999999 7899999994 99999999888
Q ss_pred ecCee
Q psy9039 245 QGGRT 249 (251)
Q Consensus 245 ~~g~~ 249 (251)
-|-.|
T Consensus 310 adP~~ 314 (337)
T PRK13523 310 RNPYF 314 (337)
T ss_pred hCccH
Confidence 77543
No 133
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00039 Score=61.73 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=107.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|=|-. +-+|-+. .-+-++.+|+.++ .|+-.==|.-+ .++.-.|.+.|++.+-.-
T Consensus 73 ~~Ye~~GA-a~iSVLT--d~~~F~G----------s~e~L~~v~~~v~--~PvL~KDFiiD-~yQI~~Ar~~GADavLLI 136 (254)
T COG0134 73 KAYEEGGA-AAISVLT--DPKYFQG----------SFEDLRAVRAAVD--LPVLRKDFIID-PYQIYEARAAGADAVLLI 136 (254)
T ss_pred HHHHHhCC-eEEEEec--CccccCC----------CHHHHHHHHHhcC--CCeeeccCCCC-HHHHHHHHHcCcccHHHH
Confidence 67888999 9987633 3345443 3456688888888 79655444445 577888888888765541
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC-CCC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT-GDP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~ 200 (251)
. ..+.. ...++..+.+.+|.+-. + .....+.++.|...+++.++|-...- ...
T Consensus 137 ~---------~~L~~~~l~el~~~A~~LGm~~L-V---------------EVh~~eEl~rAl~~ga~iIGINnRdL~tf~ 191 (254)
T COG0134 137 V---------AALDDEQLEELVDRAHELGMEVL-V---------------EVHNEEELERALKLGAKIIGINNRDLTTLE 191 (254)
T ss_pred H---------HhcCHHHHHHHHHHHHHcCCeeE-E---------------EECCHHHHHHHHhCCCCEEEEeCCCcchhe
Confidence 1 11111 25777788888876221 1 11223344555557899988855422 123
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +.-++.-+|| |++++..+.. +||+.|||+|++..+
T Consensus 192 vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 192 VDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred ecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 4455545554443 4789999999 6999999996 999999999998754
No 134
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.66 E-value=0.00032 Score=65.20 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHhhhccccEEEecCC-C---CCC----CC---CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 179 AKAASFFLSDGLIITGN-A---TGD----PA---DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~-~---~g~----~~---~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++..+.+++|.+-||+. . +.. .+ .....+++|+.+++||++++++ +++.+.++++ +|.|.+|-.+
T Consensus 230 ~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~ 309 (353)
T cd02930 230 AKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPF 309 (353)
T ss_pred HHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHH
Confidence 33334457888877642 1 100 01 1345678999999999999999 7899999995 9999999888
Q ss_pred eecCe
Q psy9039 244 KQGGR 248 (251)
Q Consensus 244 ~~~g~ 248 (251)
+.|-.
T Consensus 310 l~dP~ 314 (353)
T cd02930 310 LADPD 314 (353)
T ss_pred HHCcc
Confidence 77644
No 135
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.65 E-value=0.00015 Score=62.96 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=55.6
Q ss_pred HHHHHHhhhccccEEEecCC---CCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIITGN---ATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~---~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-..+|+|.+.|..- ..+...+.+.++++++.+++|+.+|+|| +++++.+++. ||.+++||....+
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~d 108 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKN 108 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhC
Confidence 34455444468888888643 2334456789999999999999999999 6899999986 9999999988765
No 136
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.61 E-value=0.00037 Score=64.20 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=52.5
Q ss_pred HHHHHHhhhccccEEEecCCCC----------C-C-------------CCCHHHHHHHHhcC-CCCEEEecCC-ChHhHH
Q psy9039 176 TETAKAASFFLSDGLIITGNAT----------G-D-------------PADVSQLMSVKNAV-DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~----------g-~-------------~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~ 229 (251)
.+.++.....|+|++.|+|..- + . .+..+.+.++++.. ++||++.||| +..++.
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~ 271 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIA 271 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHH
Confidence 4556666668999999998410 0 0 01235677777777 8999999999 789988
Q ss_pred Hhhc--CCEEEEeceEee
Q psy9039 230 HYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~~ 245 (251)
+++. ||+|.+|+.|.+
T Consensus 272 kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 272 KALALGADLVGMAGPFLK 289 (326)
T ss_pred HHHHhCCCEEEEcHHHHH
Confidence 8885 999999998754
No 137
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.61 E-value=0.0008 Score=62.68 Aligned_cols=70 Identities=30% Similarity=0.456 Sum_probs=53.7
Q ss_pred HHHHHHhhhccccEEEecCC--CC--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGN--AT--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~--~~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|+++|+|. +. +.+..++.+.++++.. ++||++-||| +..++.+++. ||+|.+|+.|..
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34556666689999999764 22 1223457788888776 6999999999 7899888886 999999998864
No 138
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.60 E-value=0.00017 Score=63.75 Aligned_cols=178 Identities=10% Similarity=0.091 Sum_probs=100.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ |-+.|-...+. +. ..+ ....+++++.+.+ .|+-+-.=... .+...-....|++.+-.+
T Consensus 37 ~~~~~~ga-~~lhivDLd~a-~~----g~~----~n~~~i~~i~~~~---~~v~vGGGIrs-~e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 37 EKLIEEGF-TLIHVVDLSKA-IE----NSV----ENLPVLEKLSEFA---EHIQIGGGIRS-LDYAEKLRKLGYRRQIVS 102 (241)
T ss_pred HHHHHCCC-CEEEEEECCCc-cc----CCc----chHHHHHHHHhhc---CcEEEecCCCC-HHHHHHHHHCCCCEEEEC
Confidence 56778999 99987544322 10 111 1455666776543 14333211112 333444444566554332
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCC----C-CCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH----A-ITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~----~-~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+.+ ..+...+.+. .+++. .+ +-.+..|.+.. + ..++.+..+.++..+.+|+..+++|--..
T Consensus 103 ----T~a------~~~p~~l~~~-~~~~~-~i--vvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~r 168 (241)
T PRK14114 103 ----SKV------LEDPSFLKFL-KEIDV-EP--VFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEK 168 (241)
T ss_pred ----chh------hCCHHHHHHH-HHhCC-CE--EEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeech
Confidence 111 1122233333 34543 33 22233332210 0 12345566777777778999999985322
Q ss_pred -C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--------CCEEEEeceEeecCee
Q psy9039 198 -G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--------ADALIIGSHFKQGGRT 249 (251)
Q Consensus 198 -g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--------ADGvIVGS~~~~~g~~ 249 (251)
| ..++.++++++++.+++||+++||+ +.+++.++.. ++|+||||+|- +|++
T Consensus 169 dGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~-~g~i 231 (241)
T PRK14114 169 DGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFL-EGIL 231 (241)
T ss_pred hhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHH-CCCC
Confidence 2 2357899999999899999999999 6788876643 78999999984 4443
No 139
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.57 E-value=0.00021 Score=63.24 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=103.2
Q ss_pred CCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccc
Q psy9039 44 PSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAES 123 (251)
Q Consensus 44 ~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~ 123 (251)
.+.+.|+ ..+.|--..+.. ..+. ...+++++.+.++ .|+-+-.=... .+...-....|++.+-.+
T Consensus 39 ~~~~~g~-~~lhivDLd~a~-g~~~---------n~~~i~~i~~~~~--~~v~vgGGIrs-~e~~~~~l~~Ga~~vvig- 103 (243)
T TIGR01919 39 WWEQGGA-EWIHLVDLDAAF-GGGN---------NEMMLEEVVKLLV--VVEELSGGRRD-DSSLRAALTGGRARVNGG- 103 (243)
T ss_pred HHHhCCC-eEEEEEECCCCC-CCcc---------hHHHHHHHHHHCC--CCEEEcCCCCC-HHHHHHHHHcCCCEEEEC-
Confidence 3467788 777765444332 2221 4557788887776 57644322222 344443445566655432
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccC--C-----CCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSS--H-----AITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~--~-----~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
..+ ..+...+.+..++++. .+-+--|+.. .+. . +..+..++.+.++....+|+..+++|--.
T Consensus 104 ---T~a------~~~p~~~~~~~~~~g~-~ivvslD~k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~ 172 (243)
T TIGR01919 104 ---TAA------LENPWWAAAVIRYGGD-IVAVGLDVLE-DGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSK 172 (243)
T ss_pred ---chh------hCCHHHHHHHHHHccc-cEEEEEEEec-CCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecC
Confidence 111 1133334455555543 2222112220 110 0 11234566677777777899999998753
Q ss_pred CC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh--h-c--CCEEEEeceEee
Q psy9039 197 TG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY--M-T--ADALIIGSHFKQ 245 (251)
Q Consensus 197 ~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~--~-~--ADGvIVGS~~~~ 245 (251)
.. ..++.++++++++.+++||+++||+ +.+++.++ + . +||+|+|++|-.
T Consensus 173 ~dGt~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~ 230 (243)
T TIGR01919 173 KDGLSGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYA 230 (243)
T ss_pred CcccCCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHc
Confidence 32 2457899999999999999999999 67898876 2 2 899999999844
No 140
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.56 E-value=0.00072 Score=58.54 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=87.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~ 121 (251)
+.+.+.|+ |.+= +=|... ..-.++.+....+.+.++... .++||. .|.. ..-..++...+-++++.
T Consensus 17 ~~~~~~Ga-d~iG------fI~~~~-S~R~V~~~~a~~i~~~~~~~i---~~VgVf--~~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 17 EAAAELGA-DAIG------FVFYPK-SPRYVSPEQAAELAAALPPFV---KVVGVF--VNASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred HHHHHcCC-CEEE------EccCCC-CCCcCCHHHHHHHHHhCCCCC---CEEEEE--eCCCHHHHHHHHHhcCCCEEEE
Confidence 66788999 9984 333211 011222222333333333211 366655 4543 34456666777889986
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh-ccccEEEe-cC----C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF-FLSDGLII-TG----N 195 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~-~~~D~v~V-TG----~ 195 (251)
+ |-. +...+...|+..+..-++.+ ... ....+.. ...+ ..+|.+.+ |+ .
T Consensus 84 H----------g~e--~~~~~~~l~~~~~~~iik~i---~v~-------~~~~l~~---~~~~~~~~d~~L~Ds~~~~~G 138 (210)
T PRK01222 84 H----------GDE--TPEFCRQLKRRYGLPVIKAL---RVR-------SAGDLEA---AAAYYGDADGLLLDAYVGLPG 138 (210)
T ss_pred C----------CCC--CHHHHHHHHhhcCCcEEEEE---ecC-------CHHHHHH---HHhhhccCCEEEEcCCCCCCC
Confidence 4 211 22334445555443223332 111 1111211 1112 24676655 22 1
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
.+|..-+++.+. ++ .+.|++++|||+|+|+.+++. ..|+=|-|.+.. .|+
T Consensus 139 GtG~~~dw~~l~--~~-~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~ 192 (210)
T PRK01222 139 GTGKTFDWSLLP--AG-LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGI 192 (210)
T ss_pred CCCCccchHHhh--hc-cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCC
Confidence 234444566552 12 267999999999999999884 889999999986 564
No 141
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.56 E-value=0.00026 Score=62.01 Aligned_cols=52 Identities=19% Similarity=0.444 Sum_probs=45.6
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.|+..|.+.+.+.++++.+.+++||.+|||| |.+++.+++. +|++|+||+..
T Consensus 52 dga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 52 DGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred cchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 5666666678899999998899999999999 6899999996 99999999876
No 142
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.54 E-value=0.00048 Score=63.47 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=49.9
Q ss_pred HHHHHHhhhccccEEEecCCC-----C----C-CCCCHHHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIITGNA-----T----G-DPADVSQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~-----~----g-~~~~~~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.+...|+|++.|.+.. + + ..+.+..+..+++.. ++||++.||| ++.++.+++. ||+|.+
T Consensus 146 ~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 146 AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 445666666799999884211 1 1 123455566555543 6999999999 6899998886 999999
Q ss_pred eceEee
Q psy9039 240 GSHFKQ 245 (251)
Q Consensus 240 GS~~~~ 245 (251)
||.|..
T Consensus 226 Gt~fa~ 231 (325)
T cd00381 226 GSLLAG 231 (325)
T ss_pred cchhcc
Confidence 998854
No 143
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.53 E-value=0.00022 Score=69.39 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred ccHHHHHHHhhhccccEEEec---C----CC--C--CCC--CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 173 VDITETAKAASFFLSDGLIIT---G----NA--T--GDP--ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VT---G----~~--~--g~~--~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
....+.++.+...|+|++.|+ | .+ + |.+ +....+.++.+..++||++-||| ++.++.+++. ||+
T Consensus 297 v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~ 376 (505)
T PLN02274 297 VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGAST 376 (505)
T ss_pred CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 344556677777899999884 2 11 1 111 23456777777778999999999 7999998886 999
Q ss_pred EEEeceEee
Q psy9039 237 LIIGSHFKQ 245 (251)
Q Consensus 237 vIVGS~~~~ 245 (251)
|.+||+|..
T Consensus 377 V~vGs~~~~ 385 (505)
T PLN02274 377 VMMGSFLAG 385 (505)
T ss_pred EEEchhhcc
Confidence 999999853
No 144
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.50 E-value=0.0011 Score=67.52 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCC-------CCccccCCCch--H---HHHHHHHHHHHHHHhCCCCccEEE
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD-------VPYVLEAESGP--E---ITANMTRLCAEIRKVLPPSVPVGV 97 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~-------~Pf~~p~~~gp--~---i~aa~~~~i~~vr~~~~~~~P~Gv 97 (251)
.++.+++.-.+.|+...++|+ |+|+|---.| -|.+....|.+ . -..-..++++.+|+..++..|+++
T Consensus 545 eI~~~i~~f~~aA~~a~~aGf-Dgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ 623 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGF-DWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSV 623 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEE
Confidence 467788888888888899999 9999831111 46553322221 1 122233577778877653345554
Q ss_pred EEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 98 QILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 98 n~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
=+ +. .+|..- | + + . +...+
T Consensus 624 ri--~~------------~~~~~~-----------g-~--~--------------------------------~-~~~~~ 642 (765)
T PRK08255 624 RI--SA------------HDWVEG-----------G-N--T--------------------------------P-DDAVE 642 (765)
T ss_pred EE--cc------------ccccCC-----------C-C--C--------------------------------H-HHHHH
Confidence 43 21 122110 0 0 0 0 11123
Q ss_pred HHHHhhhccccEEEecCCCCCCC--------CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 178 TAKAASFFLSDGLIITGNATGDP--------ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~--------~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++..+..|+|.+-||+..+... ......+++|+.+++||++.|+| +++++.++++ ||.|.+|-.|+.
T Consensus 643 ~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 643 IARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 33443445788888875332211 12345678899999999999999 6899999994 999999999988
Q ss_pred cCee
Q psy9039 246 GGRT 249 (251)
Q Consensus 246 ~g~~ 249 (251)
|-.|
T Consensus 723 dP~~ 726 (765)
T PRK08255 723 DPAW 726 (765)
T ss_pred CccH
Confidence 7544
No 145
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.49 E-value=0.0004 Score=60.51 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=55.1
Q ss_pred HHHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+.++.-..+|++.+.+|- ..++...+.+.++++++.+++||++|||| +.+++.+++. +|++++||++.++
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~ 109 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALEN 109 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcC
Confidence 34444444446888777755 33344567788999999999999999999 6899998875 9999999998765
No 146
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00056 Score=62.55 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=59.1
Q ss_pred cccHHHHHHHhhhccccEEEecCCCC-CC------------------------CCCHHHHHHHHhcCC--CCEEEecCC-
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNAT-GD------------------------PADVSQLMSVKNAVD--LPILIGSGV- 223 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~-g~------------------------~~~~~~l~~vr~~~~--~PV~vG~GI- 223 (251)
...+.++|+.+..+|+|+++.|.+.. +. +..++.++++++.++ +||+-=|||
T Consensus 172 ~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~ 251 (310)
T COG0167 172 ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE 251 (310)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC
Confidence 35677888888889999998866322 11 012466888888865 999999999
Q ss_pred ChHhHHHhh-c-CCEEEEeceEeecCe
Q psy9039 224 TSDNVEHYM-T-ADALIIGSHFKQGGR 248 (251)
Q Consensus 224 ~~~~v~~~~-~-ADGvIVGS~~~~~g~ 248 (251)
|.+++.+.+ . |+.++|||++..+|-
T Consensus 252 s~~DA~E~i~aGA~~vQv~Tal~~~Gp 278 (310)
T COG0167 252 TGEDALEFILAGASAVQVGTALIYKGP 278 (310)
T ss_pred cHHHHHHHHHcCCchheeeeeeeeeCc
Confidence 788877777 4 999999999999874
No 147
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.47 E-value=0.0004 Score=60.34 Aligned_cols=71 Identities=21% Similarity=0.431 Sum_probs=53.9
Q ss_pred HHHHHHhhhccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-..+|++.+.+ .+...+...+.+.++++++.+++|+.+|+|| +.+++.+++. ||.+++||...++
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d 107 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 34444433457777755 3444455557789999999999999999999 6899999996 9999999987665
No 148
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.45 E-value=5.5e-05 Score=70.36 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=52.4
Q ss_pred HHHHHhhhccccEEEecCCCC-CC----CC-CHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 177 ETAKAASFFLSDGLIITGNAT-GD----PA-DVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~-g~----~~-~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++++..+..|+|.+.||+... .. .. ....++.+|+.+ ++||++.||| +++++.++++ ||+|-+|..|+.
T Consensus 239 ~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 239 ALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 444444556899999987421 11 11 235566777766 7999999999 7999999996 999999999877
Q ss_pred cCe
Q psy9039 246 GGR 248 (251)
Q Consensus 246 ~g~ 248 (251)
|-.
T Consensus 319 dPd 321 (353)
T cd04735 319 DPD 321 (353)
T ss_pred Ccc
Confidence 644
No 149
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.44 E-value=0.0015 Score=60.75 Aligned_cols=70 Identities=24% Similarity=0.459 Sum_probs=51.6
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC-----CCCHHHHHHHHhc---C--CCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD-----PADVSQLMSVKNA---V--DLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~-----~~~~~~l~~vr~~---~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..+.++.+...|+|+++|+|.. |. .+..+.|.++++. . ++||++.||| +..++.+++. ||+|.+|+
T Consensus 223 ~~~dA~~a~~~G~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~ 301 (344)
T cd02922 223 TVEDAVLAAEYGVDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGR 301 (344)
T ss_pred CHHHHHHHHHcCCCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 3555666667899999999853 22 2234455555552 2 5999999999 7899888886 99999999
Q ss_pred eEee
Q psy9039 242 HFKQ 245 (251)
Q Consensus 242 ~~~~ 245 (251)
.|..
T Consensus 302 ~~l~ 305 (344)
T cd02922 302 PFLY 305 (344)
T ss_pred HHHH
Confidence 8865
No 150
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0016 Score=56.89 Aligned_cols=201 Identities=18% Similarity=0.244 Sum_probs=128.3
Q ss_pred ceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHH
Q psy9039 5 HGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAE 84 (251)
Q Consensus 5 ~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~ 84 (251)
|+..|-.+.+.-.-.. ||| .+.. +.+.+.|+ |=+.+ +|+-=|. .| ..-|..++++
T Consensus 14 ~GrVVKGv~F~~lrd~--GDp-----VelA--------~~Y~e~GA-DElvF---lDItAs~---~g---r~~~~~vv~r 68 (256)
T COG0107 14 DGRVVKGVNFKNLRDA--GDP-----VELA--------KRYNEEGA-DELVF---LDITASS---EG---RETMLDVVER 68 (256)
T ss_pred CCEEEecccccchhhc--CCh-----HHHH--------HHHHHcCC-CeEEE---Eeccccc---cc---chhHHHHHHH
Confidence 6677777766555445 766 2333 55788999 98874 6664443 34 3348888899
Q ss_pred HHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhh-hhHh-
Q psy9039 85 IRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFT-DIKK- 162 (251)
Q Consensus 85 vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a-~v~~- 162 (251)
+.+... +|+-+-.=..+ ++.+.--...|++=+.+|. . . ..++.-+.+..++.|.- .-+++ |...
T Consensus 69 ~A~~vf--iPltVGGGI~s-~eD~~~ll~aGADKVSINs---a-----A--v~~p~lI~~~a~~FGsQ-ciVvaIDakr~ 134 (256)
T COG0107 69 VAEQVF--IPLTVGGGIRS-VEDARKLLRAGADKVSINS---A-----A--VKDPELITEAADRFGSQ-CIVVAIDAKRV 134 (256)
T ss_pred HHhhce--eeeEecCCcCC-HHHHHHHHHcCCCeeeeCh---h-----H--hcChHHHHHHHHHhCCc-eEEEEEEeeec
Confidence 988888 89888765555 5555555667777777652 1 1 11333455666666651 11111 1111
Q ss_pred -----------hc-cCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC-C--CCHHHHHHHHhcCCCCEEEecCC-ChH
Q psy9039 163 -----------KH-SSHAITADVDITETAKAASFFLSDGLIITGNATGD-P--ADVSQLMSVKNAVDLPILIGSGV-TSD 226 (251)
Q Consensus 163 -----------k~-~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~-~--~~~~~l~~vr~~~~~PV~vG~GI-~~~ 226 (251)
.| |.. ......-+-++..+..|+-=+.+|...... . -++++++.+++.+++|||+.||. +++
T Consensus 135 ~~g~~~~~~v~~~gGr~--~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~e 212 (256)
T COG0107 135 PDGENGWYEVFTHGGRE--DTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPE 212 (256)
T ss_pred cCCCCCcEEEEecCCCc--CCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHH
Confidence 11 111 122344555666666788888887653322 2 26899999999999999999999 899
Q ss_pred hHHHhhc---CCEEEEeceEeec
Q psy9039 227 NVEHYMT---ADALIIGSHFKQG 246 (251)
Q Consensus 227 ~v~~~~~---ADGvIVGS~~~~~ 246 (251)
++.+.+. ||++...|-|..+
T Consensus 213 hf~eaf~~~~adAaLAAsiFH~~ 235 (256)
T COG0107 213 HFVEAFTEGKADAALAASIFHFG 235 (256)
T ss_pred HHHHHHHhcCccHHHhhhhhhcC
Confidence 9999884 9999998888654
No 151
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.38 E-value=0.00045 Score=63.17 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=53.3
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEe
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
+...+.++....+|+|.+.|=|.... .+.+++.++++++.+++||++.||| |.+++.+.++ +|||.+|....
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHC
T ss_pred hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhh
Confidence 44566667666789999999774221 2457899999999999999999999 7999999985 99999998766
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
.+
T Consensus 218 ~n 219 (309)
T PF01207_consen 218 GN 219 (309)
T ss_dssp C-
T ss_pred hc
Confidence 54
No 152
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.37 E-value=0.00032 Score=60.41 Aligned_cols=167 Identities=18% Similarity=0.327 Sum_probs=98.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.+-+-=+- --|.....-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.+-..
T Consensus 19 ~~l~~~g~-d~lHiDiMD-g~fvpn~~~g~~~-------i~~i~~~~~--~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H 87 (201)
T PF00834_consen 19 KRLEEAGA-DWLHIDIMD-GHFVPNLTFGPDI-------IKAIRKITD--LPLDVHLMVENPERYIEEFAEAGADYITFH 87 (201)
T ss_dssp HHHHHTT--SEEEEEEEB-SSSSSSB-B-HHH-------HHHHHTTSS--SEEEEEEESSSGGGHHHHHHHHT-SEEEEE
T ss_pred HHHHHcCC-CEEEEeecc-cccCCcccCCHHH-------HHHHhhcCC--CcEEEEeeeccHHHHHHHHHhcCCCEEEEc
Confidence 67788999 998764333 3365555556554 566777776 799999888876544444444566665543
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh-ccccEEEecCCCCCCCC
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF-FLSDGLIITGNATGDPA 201 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~-~~~D~v~VTG~~~g~~~ 201 (251)
.. -..+..+.+++-++.|. .+-+. +++. | +++.+ ... ..+|.+-+-....|...
T Consensus 88 ~E----------~~~~~~~~i~~ik~~g~-k~Gia--lnP~------T---~~~~~---~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 88 AE----------ATEDPKETIKYIKEAGI-KAGIA--LNPE------T---PVEEL---EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp GG----------GTTTHHHHHHHHHHTTS-EEEEE--E-TT------S----GGGG---TTTGCCSSEEEEESS-TTTSS
T ss_pred cc----------chhCHHHHHHHHHHhCC-CEEEE--EECC------C---CchHH---HHHhhhcCEEEEEEecCCCCc
Confidence 11 11245567777777765 21111 1211 1 22221 112 36899877665555432
Q ss_pred ------CHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 202 ------DVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 202 ------~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..++++++|+.. ++.+.+=||||.+|+.++.+ ||.+++||++-+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFK 199 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhC
Confidence 246666666543 48999999999999999995 999999998754
No 153
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.37 E-value=0.0026 Score=62.40 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=115.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh----------HHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN----------KAALATAQ 112 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~----------~~~~~ia~ 112 (251)
+.+.+.|+ |-|.+-|.-+. . .++.-...|..+++++.+... +|+-+=.=..+- .+...-..
T Consensus 274 ~~y~~~Ga-del~~~Di~~~---~---~~~~~~~~~~~~i~~i~~~~~--ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 274 GQYYKDGA-DEVAFLNITGF---R---DFPLGDLPMLEVLRRASENVF--VPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred HHHHHcCC-CEEEEEECCCC---c---CCcccchhHHHHHHHHHhhCC--CCEEEcCCccccccccccccchHHHHHHHH
Confidence 55788999 99987555432 1 233344457788888888877 787665333220 13344445
Q ss_pred HcCccceeccccccccc---CCCceeecCcchhHHHHHhcCCCcchhhhhhHhhc-------------------------
Q psy9039 113 AAGLDFIRAESFVFGHM---ADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKH------------------------- 164 (251)
Q Consensus 113 a~g~~Fir~~~~~~~~~---~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~------------------------- 164 (251)
..|++-+-++...-... -..| -..+..-+.+..+++|...|-+ .+..|.
T Consensus 345 ~~GadkV~i~s~Av~~~~~~~~~~-~~~~p~~i~~~~~~fg~q~ivv--siD~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (538)
T PLN02617 345 RSGADKISIGSDAVYAAEEYIASG-VKTGKTSIEQISRVYGNQAVVV--SIDPRRVYVKDPSDVPFKTVKVTNPGPNGEE 421 (538)
T ss_pred HcCCCEEEEChHHHhChhhhhccc-cccCHHHHHHHHHHcCCceEEE--EEecCcCcccCccccccccccccccCcCccc
Confidence 56777666542110000 0001 0112334455666666421211 122111
Q ss_pred ---------cCCCCCCcccHHHHHHHhhhccccEEEecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 165 ---------SSHAITADVDITETAKAASFFLSDGLIITGNATG---DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 165 ---------~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
|-. ..++....+.++..+..|+.-+++|-.... ...++++++++++.+++||++.||+ +++++.++
T Consensus 422 ~~~~~v~~~gg~-~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~ 500 (538)
T PLN02617 422 YAWYQCTVKGGR-EGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDV 500 (538)
T ss_pred ceEEEEEEecCc-ccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHH
Confidence 000 012455667777777789999999876432 2347899999999999999999999 79999999
Q ss_pred hc---CCEEEEeceEeec
Q psy9039 232 MT---ADALIIGSHFKQG 246 (251)
Q Consensus 232 ~~---ADGvIVGS~~~~~ 246 (251)
+. ||++..+|-|...
T Consensus 501 ~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 501 FSKTNASAALAAGIFHRK 518 (538)
T ss_pred HhcCCccEEEEEeeeccC
Confidence 94 8999999998654
No 154
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.34 E-value=0.0021 Score=59.43 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=107.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~ 121 (251)
+.++++|+ ++|=|-.+- .|-.. ...-++++|+. ++ +|+---=|.-+ .+++..|.+.|++-+=.
T Consensus 146 ~~Ye~~GA-~aISVLTd~--~~F~G----------s~e~L~~vr~~~v~--lPvLrKDFIID-~yQI~eAr~~GADAVLL 209 (338)
T PLN02460 146 QAYEKGGA-ACLSVLTDE--KYFQG----------SFENLEAIRNAGVK--CPLLCKEFIVD-AWQIYYARSKGADAILL 209 (338)
T ss_pred HHHHhCCC-cEEEEecCc--CcCCC----------CHHHHHHHHHcCCC--CCEeeccccCC-HHHHHHHHHcCCCcHHH
Confidence 66888899 888774433 33332 23456788887 77 78766555545 67888888889887654
Q ss_pred ccccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc-cccEEEecCCCCC-
Q psy9039 122 ESFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFF-LSDGLIITGNATG- 198 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~-~~D~v~VTG~~~g- 198 (251)
- -+++.+ +..++.++.+.+|.+-+-.+ | .++..+.+... |++.++|-...-.
T Consensus 210 I---------aaiL~~~~L~~l~~~A~~LGme~LVEV---------H-------~~~ElerAl~~~ga~iIGINNRdL~T 264 (338)
T PLN02460 210 I---------AAVLPDLDIKYMLKICKSLGMAALIEV---------H-------DEREMDRVLGIEGVELIGINNRSLET 264 (338)
T ss_pred H---------HHhCCHHHHHHHHHHHHHcCCeEEEEe---------C-------CHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 1 122222 47788888999987322111 2 23344555544 8999999875332
Q ss_pred CCCCHHHHHHHHh-----c---CCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 199 DPADVSQLMSVKN-----A---VDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 199 ~~~~~~~l~~vr~-----~---~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+++.-.++.. . .++-++.-+|| |++++..+.. +||+-||++|++..+
T Consensus 265 f~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 265 FEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred ceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 2345555444444 1 13446677999 7999999986 999999999998654
No 155
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.34 E-value=0.00032 Score=64.77 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=52.2
Q ss_pred HHHHHHhhhccccEEEecCCCCCCC-----------------------CCHHHHHHHHh-cCCCCEEEecCC-ChHhHHH
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDP-----------------------ADVSQLMSVKN-AVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~-----------------------~~~~~l~~vr~-~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.++.....|+|++.|+|.. |.. +..+.+.++++ ..++||++.||| +++++.+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAK 271 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHH
Confidence 455666666799999999842 210 11245666776 568999999999 7999998
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
++. ||+|-+|+.|.+
T Consensus 272 aLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 272 AIALGADAVGMARPFLK 288 (333)
T ss_pred HHHhCCCeehhhHHHHH
Confidence 886 999999999875
No 156
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.34 E-value=0.0028 Score=56.41 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=105.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+.+.|+ +.|.|-.. |.| ...+++++.+.++ .|+-+-.=.+ .+...-....|++.+-.+
T Consensus 45 ~~~~~~Ga-~~lHvVDL-g~~--------------n~~~i~~i~~~~~--~~v~vGGGIr--~e~v~~~l~aGa~rVvIG 104 (253)
T TIGR02129 45 KLYKDDGV-KGCHVIML-GPN--------------NDDAAKEALHAYP--GGLQVGGGIN--DTNAQEWLDEGASHVIVT 104 (253)
T ss_pred HHHHHcCC-CEEEEEEC-CCC--------------cHHHHHHHHHhCC--CCEEEeCCcC--HHHHHHHHHcCCCEEEEC
Confidence 66888999 99987544 222 2356667766666 5765554333 244444455666665542
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhH---h------hccCCCCCCcccHH-HHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIK---K------KHSSHAITADVDIT-ETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~---~------k~~~~~~~~~~~i~-~~a~~a~~~~~D~v~V 192 (251)
. .+-.+..+ +.+.+.+..+++|.+.|-+--|+. . .+|-. ..++.++. +.++..+.+ +..+++
T Consensus 105 S----~av~~~~i--~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~-~~t~~~~~~e~~~~~~~~-~~~il~ 176 (253)
T TIGR02129 105 S----WLFTKGKF--DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQ-TITDLELNAETLEELSKY-CDEFLI 176 (253)
T ss_pred c----HHHhCCCC--CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCc-ccCCCChHHHHHHHHHhh-CCEEEE
Confidence 1 11011011 134566777888765444332332 0 11211 12344554 555555545 888888
Q ss_pred cCCCC-C--CCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh--hc--CCEEEEeceEee
Q psy9039 193 TGNAT-G--DPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY--MT--ADALIIGSHFKQ 245 (251)
Q Consensus 193 TG~~~-g--~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~--~~--ADGvIVGS~~~~ 245 (251)
|-... | ..++.++++++++.+++||++.||+ +.+++.++ +. ..++|+|.+|-.
T Consensus 177 TdI~rDGtl~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 177 HAADVEGLCKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred eeecccCccccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 87533 3 2457899999999999999999999 68999877 42 577999988743
No 157
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.34 E-value=0.00057 Score=59.76 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccEEEec---CCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIIT---GNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT---G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+.++....+|+|.+.+- +...+.....+.++++.+.+++|+++|||| +.+++..++. ||++++||...++
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 445555544677777553 333344556788888888889999999999 6899999986 9999999987654
No 158
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.33 E-value=0.0025 Score=55.84 Aligned_cols=148 Identities=13% Similarity=0.159 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~ 157 (251)
...+++++++.+. .|+-+-.=... .+.+.-....|++.+-. |.. - + +.+.+.+..++++. ++
T Consensus 61 n~~~i~~i~~~~~--~pv~~gGGIrs-~edv~~l~~~G~~~viv----Gta----a-~--~~~~l~~~~~~~g~----iv 122 (228)
T PRK04128 61 NLDVVKNIIRETG--LKVQVGGGLRT-YESIKDAYEIGVENVII----GTK----A-F--DLEFLEKVTSEFEG----IT 122 (228)
T ss_pred hHHHHHHHHhhCC--CCEEEcCCCCC-HHHHHHHHHCCCCEEEE----Cch----h-c--CHHHHHHHHHHcCC----EE
Confidence 3456777777766 67666533333 33333333445544332 111 1 1 23344455566652 22
Q ss_pred hhhHhhccCCC-----CCCcccHHHHHHHhhhccccEEEecCCCC-CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 158 TDIKKKHSSHA-----ITADVDITETAKAASFFLSDGLIITGNAT-GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 158 a~v~~k~~~~~-----~~~~~~i~~~a~~a~~~~~D~v~VTG~~~-g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
-.+..|.+... ...+.+..+.++....+ +..+++|--.. |.....+.+.+. ..++||+++||| +.+++.+
T Consensus 123 vslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G~d~l~~~--~~~~pviasGGv~~~~Dl~~ 199 (228)
T PRK04128 123 VSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTGIEEIERF--WGDEEFIYAGGVSSAEDVKK 199 (228)
T ss_pred EEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccCHHHHHHh--cCCCCEEEECCCCCHHHHHH
Confidence 22333333111 11334555666666545 67888887533 332333333222 258999999999 6899998
Q ss_pred hhc--CCEEEEeceEeec
Q psy9039 231 YMT--ADALIIGSHFKQG 246 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~~ 246 (251)
+.. +||+++||+|..+
T Consensus 200 l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 200 LAEIGFSGVIIGKALYEG 217 (228)
T ss_pred HHHCCCCEEEEEhhhhcC
Confidence 886 9999999998544
No 159
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.32 E-value=0.00074 Score=60.14 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=54.8
Q ss_pred HHHHHHhhhccccEEEecC---CCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 176 TETAKAASFFLSDGLIITG---NATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG---~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.++++.-...|++.+.+|= ..++..++.+.++++.+.+++||.+|||| +.+++.+++. ++++++||++.++
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 3444443345788887754 33445567899999999899999999999 7899999886 9999999987665
No 160
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.31 E-value=0.00047 Score=59.61 Aligned_cols=48 Identities=29% Similarity=0.476 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhh--c--CCEEEEeceEeecC
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM--T--ADALIIGSHFKQGG 247 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~--~--ADGvIVGS~~~~~g 247 (251)
+|..-+++.++++ .+.|++++||++|+|+++++ . ..|+=|-|.+...|
T Consensus 138 tG~~~dw~~~~~~---~~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G 189 (207)
T PRK13958 138 TGQTYDWTILKHI---KDIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNG 189 (207)
T ss_pred CCcEeChHHhhhc---cCCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCC
Confidence 3444567777655 35799999999999999865 3 78998888887655
No 161
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.31 E-value=0.0019 Score=65.15 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=109.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.++++|+ ++|-|-.+- .|-. | ...-++++|+.++ +|+---=|.-+ .+++..|+..|++.+=.-
T Consensus 77 ~~y~~~GA-~aiSVlTe~--~~F~----G------s~~~l~~vr~~v~--~PvLrKDFIid-~~QI~ea~~~GADavLLI 140 (695)
T PRK13802 77 REYEQGGA-SAISVLTEG--RRFL----G------SLDDFDKVRAAVH--IPVLRKDFIVT-DYQIWEARAHGADLVLLI 140 (695)
T ss_pred HHHHHcCC-cEEEEecCc--CcCC----C------CHHHHHHHHHhCC--CCEEeccccCC-HHHHHHHHHcCCCEeehh
Confidence 56888999 999875443 2222 2 3355677888888 78655444444 678888888999887652
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-.++.. +..++.++.+.+|.+-+-.+ ...+.++.|...+++.++|--..-. ..
T Consensus 141 ---------~~~L~~~~l~~l~~~a~~lGme~LvEv----------------h~~~el~~a~~~ga~iiGINnRdL~tf~ 195 (695)
T PRK13802 141 ---------VAALDDAQLKHLLDLAHELGMTVLVET----------------HTREEIERAIAAGAKVIGINARNLKDLK 195 (695)
T ss_pred ---------HhhcCHHHHHHHHHHHHHcCCeEEEEe----------------CCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 122222 46778888888887332221 2233445555568999988765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
.+++...++.... +..++.-+|| +++++..+.+ +||+.||++|++..+
T Consensus 196 vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~d 248 (695)
T PRK13802 196 VDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADD 248 (695)
T ss_pred eCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCC
Confidence 3555555666554 5677888999 7999999986 999999999998643
No 162
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.31 E-value=0.0017 Score=62.48 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=108.1
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.+ ++|+ ++|-+-.+- .|-.. ...-++++|+.++ .|+---=|.-+ .++...|+..|++.+-.-
T Consensus 77 ~~y-~~gA-~aiSVlTe~--~~F~G----------s~~~l~~vr~~v~--~PvLrKDFiid-~~QI~ea~~~GADavLLI 139 (454)
T PRK09427 77 RVY-KHYA-SAISVLTDE--KYFQG----------SFDFLPIVRAIVT--QPILCKDFIID-PYQIYLARYYGADAILLM 139 (454)
T ss_pred HHH-HcCC-eEEEEecCc--CcCCC----------CHHHHHHHHHhCC--CCEEeccccCC-HHHHHHHHHcCCCchhHH
Confidence 445 7778 888875543 33322 3344567888877 78765544445 678888888998876642
Q ss_pred cccccccCCCceeec-CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC-CC
Q psy9039 123 SFVFGHMADEGLMNA-QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG-DP 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~-da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~ 200 (251)
-+++.+ +..++.++.+.+|.+.+-.+ | .++.++.|...+++.++|-...-. ..
T Consensus 140 ---------~~~L~~~~l~~l~~~a~~lGl~~lvEv---------h-------~~~El~~al~~~a~iiGiNnRdL~t~~ 194 (454)
T PRK09427 140 ---------LSVLDDEQYRQLAAVAHSLNMGVLTEV---------S-------NEEELERAIALGAKVIGINNRNLRDLS 194 (454)
T ss_pred ---------HHhCCHHHHHHHHHHHHHcCCcEEEEE---------C-------CHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 122332 46778888999987433221 2 233445555568999998765322 23
Q ss_pred CCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc-CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT-ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~-ADGvIVGS~~~~~g~ 248 (251)
.+++.-.++.... +..++.-||| |++++..+.. +||+-||++|++..+
T Consensus 195 vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d 246 (454)
T PRK09427 195 IDLNRTRELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSSLMAEDD 246 (454)
T ss_pred ECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCC
Confidence 3555555555554 5777888999 7999998877 999999999998643
No 163
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.30 E-value=0.00078 Score=59.26 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHhhh-ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 178 TAKAASF-FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 178 ~a~~a~~-~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+.-.. .|+|-+-+ +|...+...+.+.++++.+.+++||.+|||| |.+++++++. ||-+|+||...++
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence 4443332 46676655 6666677777899999999889999999999 6899999997 9999999987665
No 164
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.29 E-value=0.00026 Score=66.15 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=50.6
Q ss_pred HHHhhhccccEEEecCCCC-CCCC-CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 179 AKAASFFLSDGLIITGNAT-GDPA-DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~-g~~~-~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
++..+..|+|.+=||+... +..+ .....+++|+.+++||+++++++++.+.++++ ||.|-+|-.|+-|-+
T Consensus 255 ~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd 329 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred HHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCcc
Confidence 3333334678887775321 1111 23445789999999999999999999999984 999999999887754
No 165
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0024 Score=58.81 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=57.8
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc---CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
..++++.++..|++++.|=|..... +.+++.|.++|+.++ +||+..|+| +++++.+.++ +|||.+|-....
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 4567777777899999998753322 357899999999997 999999999 7999999995 999999976544
No 166
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0011 Score=57.28 Aligned_cols=164 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHH-HHHHHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKA-ALATAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~-~~~ia~a~g~~Fir~ 121 (251)
++..+.|+ |.+ |+=|..+. .-.++.. .++++.+..+.. + -|.++.|.... -..++...+.++++.
T Consensus 16 ~~a~~~ga-d~i------G~If~~~S-pR~Vs~~----~a~~i~~~v~~~-~-~VgVf~n~~~~~i~~i~~~~~ld~VQl 81 (208)
T COG0135 16 KAAAKAGA-DYI------GFIFVPKS-PRYVSPE----QAREIASAVPKV-K-VVGVFVNESIEEILEIAEELGLDAVQL 81 (208)
T ss_pred HHHHHcCC-CEE------EEEEcCCC-CCcCCHH----HHHHHHHhCCCC-C-EEEEECCCCHHHHHHHHHhcCCCEEEE
Confidence 67788999 988 44454430 1122222 334444444311 1 45566676443 466777777889886
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC------C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG------N 195 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG------~ 195 (251)
+ | - -+.+.+.+.+.+++..-++.+ .+.. ...+ .......+-+|.+.+=. .
T Consensus 82 H---G-------~--e~~~~~~~l~~~~~~~v~kai---~v~~-------~~~~--~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 82 H---G-------D--EDPEYIDQLKEELGVPVIKAI---SVSE-------EGDL--ELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred C---C-------C--CCHHHHHHHHhhcCCceEEEE---EeCC-------ccch--hhhhhccCCccEEEEcCCCCCCCC
Confidence 4 1 1 133444455555433333332 2111 0011 11111224577766533 1
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--C-CEEEEeceEeec
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--A-DALIIGSHFKQG 246 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--A-DGvIVGS~~~~~ 246 (251)
.+|..-+++.+... ....|++++||+||+|+.++++ . .|+=|.|.+..+
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~ 189 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESS 189 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccC
Confidence 23444467777665 4578999999999999999996 5 999999988766
No 167
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.25 E-value=0.0088 Score=52.58 Aligned_cols=165 Identities=17% Similarity=0.213 Sum_probs=94.8
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+ |+ |.+-+==+ |-=|.....-||.+ ++++|+.++ .|+=+-++...|...+..-...|++.+-..
T Consensus 22 ~~l~~-g~-d~lH~DiM-DG~FVPN~tfg~~~-------i~~ir~~t~--~~~DvHLMv~~P~~~i~~~~~aGad~it~H 89 (229)
T PRK09722 22 EFLNS-KA-DYFHIDIM-DGHFVPNLTLSPFF-------VSQVKKLAS--KPLDVHLMVTDPQDYIDQLADAGADFITLH 89 (229)
T ss_pred HHHHh-CC-CEEEEecc-cCccCCCcccCHHH-------HHHHHhcCC--CCeEEEEEecCHHHHHHHHHHcCCCEEEEC
Confidence 55656 78 88865222 22355555556655 455666666 688888888775444444344577776654
Q ss_pred cccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCC--
Q psy9039 123 SFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDP-- 200 (251)
Q Consensus 123 ~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~-- 200 (251)
.. ... .+....+++-+++|. |.|+.+ .+.-+++.+..-. ..+|.+-+-....|..
T Consensus 90 ~E----a~~-----~~~~~~i~~Ik~~G~-----------kaGlal-nP~T~~~~l~~~l--~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 90 PE----TIN-----GQAFRLIDEIRRAGM-----------KVGLVL-NPETPVESIKYYI--HLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred cc----CCc-----chHHHHHHHHHHcCC-----------CEEEEe-CCCCCHHHHHHHH--HhcCEEEEEEEcCCCcch
Confidence 21 100 123345666667765 112222 1122333331111 2477776654444432
Q ss_pred ----CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 201 ----ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 201 ----~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
...++++++|+.. ++-+-+=|||+.+|+.++.+ ||.+++||+
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChH
Confidence 2246677666542 46699999999999999986 999999954
No 168
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.25 E-value=0.00047 Score=60.41 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=78.3
Q ss_pred HHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc
Q psy9039 108 LATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL 186 (251)
Q Consensus 108 ~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~ 186 (251)
.-+|.. .+-+|+... -.+++--+.||..|.++..+.|-.+...++ |.+++|. -.++..+..|
T Consensus 82 A~laRe~~~t~wIKLE-----Vi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl---------PY~~~D~---v~akrL~d~G 144 (247)
T PF05690_consen 82 ARLAREAFGTNWIKLE-----VIGDDKTLLPDPIETLKAAEILVKEGFVVL---------PYCTDDP---VLAKRLEDAG 144 (247)
T ss_dssp HHHHHHTTS-SEEEE-------BS-TTT--B-HHHHHHHHHHHHHTT-EEE---------EEE-S-H---HHHHHHHHTT
T ss_pred HHHHHHHcCCCeEEEE-----EeCCCCCcCCChhHHHHHHHHHHHCCCEEe---------ecCCCCH---HHHHHHHHCC
Confidence 334444 345888864 245666678999999999998877777776 3333332 2455566678
Q ss_pred ccEEEecCCCCCC---CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 187 SDGLIITGNATGD---PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 187 ~D~v~VTG~~~g~---~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|.++-.=|+--|. -.+...|+.+++..++||++-.|| +|.++.+.++ ||||.|-|++-+
T Consensus 145 caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp -SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 9988777753332 234677888998889999999999 8999999997 999999998754
No 169
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.24 E-value=0.0011 Score=58.50 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=48.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
+|+|-+.+ .+.. +...+.+.++++.+.+++||.+|||| |.+++..++. ||-+++||++.+|
T Consensus 44 ~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 44 DGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 45555433 3333 55566789999999999999999999 7899999996 9999999998775
No 170
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.15 E-value=0.0014 Score=56.74 Aligned_cols=151 Identities=17% Similarity=0.285 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC--Ccch
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA--DNVL 155 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~--~~i~ 155 (251)
...+++.+|+.+. +|+.|.-.- ...+--|...|++.++...|-. .-.+|..- .++|++...++... +++.
T Consensus 49 dp~LV~~~~~~s~--lPICVSaVe---p~~f~~aV~AGAdliEIGNfDs--FY~qGr~f-~a~eVL~Lt~~tR~LLP~~~ 120 (242)
T PF04481_consen 49 DPELVKLAKSLSN--LPICVSAVE---PELFVAAVKAGADLIEIGNFDS--FYAQGRRF-SAEEVLALTRETRSLLPDIT 120 (242)
T ss_pred CHHHHHHHHHhCC--CCeEeecCC---HHHHHHHHHhCCCEEEecchHH--HHhcCCee-cHHHHHHHHHHHHHhCCCCc
Confidence 3456677777777 799998653 3567777889999999743222 11334221 24455543333221 2332
Q ss_pred hhhhhHhhccCCCCCCcccHHHHHHHhh---hccccEEEecCCCCCCCC-------------CHHHHHHHHhcCCCCEEE
Q psy9039 156 VFTDIKKKHSSHAITADVDITETAKAAS---FFLSDGLIITGNATGDPA-------------DVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 156 i~a~v~~k~~~~~~~~~~~i~~~a~~a~---~~~~D~v~VTG~~~g~~~-------------~~~~l~~vr~~~~~PV~v 219 (251)
+ .|..-|= .++.+..+.|. ..|+|.+=.-|..+..+. ++.---.+.+.+++||+.
T Consensus 121 L--sVTVPHi-------L~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlc 191 (242)
T PF04481_consen 121 L--SVTVPHI-------LPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLC 191 (242)
T ss_pred e--EEecCcc-------ccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEe
Confidence 2 1222221 34555555554 469999977776544331 112222455667999999
Q ss_pred ecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 220 GSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 220 G~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+|++.-++--.+. |.|+=|||++-+
T Consensus 192 ASGlS~vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 192 ASGLSAVTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred ccCcchhhHHHHHHcCCcccchhHHhhh
Confidence 99999877776664 999999999865
No 171
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.14 E-value=0.003 Score=58.01 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=77.3
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII- 192 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V- 192 (251)
.+-+|+... -.+++=...||..+.++..+.+-.++..++ +.++++. ..++.....|+-++-.
T Consensus 163 ~~~~~iKlE-----vi~e~~~llpd~~~~v~aa~~L~~~Gf~v~---------~yc~~d~---~~a~~l~~~g~~avmPl 225 (326)
T PRK11840 163 GGWDLVKLE-----VLGDAKTLYPDMVETLKATEILVKEGFQVM---------VYCSDDP---IAAKRLEDAGAVAVMPL 225 (326)
T ss_pred cCCCeEEEE-----EcCCCCCcccCHHHHHHHHHHHHHCCCEEE---------EEeCCCH---HHHHHHHhcCCEEEeec
Confidence 345888864 245566778888899999999833333332 1122222 2344444335543322
Q ss_pred ---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 193 ---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 ---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
=|+..|.. +.+.|+.+++..++||+++.|| +++++++.++ |||+-+-|++.+-.
T Consensus 226 ~~pIGsg~gv~-~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~ 285 (326)
T PRK11840 226 GAPIGSGLGIQ-NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAK 285 (326)
T ss_pred cccccCCCCCC-CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCC
Confidence 12222322 6788888888889999999999 7999999997 99999999998643
No 172
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.13 E-value=0.0011 Score=61.93 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=54.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++||+..-.. .+..+.+.++++.+++||++-||| +..++.+.+. ||+|.+|+.|.
T Consensus 247 ~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 247 AEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 445566666899999999853111 234677888888889999999999 6888888886 99999999887
No 173
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.13 E-value=0.0016 Score=56.12 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=63.8
Q ss_pred cchhhhhhHhhccC-CCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 153 NVLVFTDIKKKHSS-HAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 153 ~i~i~a~v~~k~~~-~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.+++++.+.+-. ..........+.|+.....|++++-+.--..-.....+.++.+|+.+++||+++++| +++++.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~ 89 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYE 89 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHH
Confidence 35666655544210 001123456677777777899999775443333445788889999899999999988 5678888
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+.. |||+++|+....
T Consensus 90 ~~~~Gad~v~l~~~~~~ 106 (217)
T cd00331 90 ARAAGADAVLLIVAALD 106 (217)
T ss_pred HHHcCCCEEEEeeccCC
Confidence 886 999999987543
No 174
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.13 E-value=0.0013 Score=60.56 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=51.9
Q ss_pred HHHHHHhhhccccEEEecC---------CCCCC-CCC--HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIITG---------NATGD-PAD--VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG---------~~~g~-~~~--~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.+...|+|++.|.+ .+++. .++ +..++++++..++||++-||| ++.++.+.+. ||+|.+|
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 4456666667999976542 12222 232 345888888889999999999 7999998886 9999999
Q ss_pred ceEe
Q psy9039 241 SHFK 244 (251)
Q Consensus 241 S~~~ 244 (251)
+.|.
T Consensus 231 ~~~~ 234 (326)
T PRK05458 231 SLFA 234 (326)
T ss_pred hhhc
Confidence 9997
No 175
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.13 E-value=0.0013 Score=62.21 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=50.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCC----------CC-CCCHHHH---HHHHhcCCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT----------GD-PADVSQL---MSVKNAVDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~----------g~-~~~~~~l---~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
...+.++.+...|+|++.| |... |. .+.+..+ .++.+..++||++-||| ++.++.+.+. ||+
T Consensus 203 ~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~a 281 (404)
T PRK06843 203 VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADS 281 (404)
T ss_pred CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 3345566666679999876 4221 21 2344444 44444457999999999 7999998886 999
Q ss_pred EEEeceEee
Q psy9039 237 LIIGSHFKQ 245 (251)
Q Consensus 237 vIVGS~~~~ 245 (251)
|.+||.|..
T Consensus 282 VmvGs~~ag 290 (404)
T PRK06843 282 VMIGNLFAG 290 (404)
T ss_pred EEEcceeee
Confidence 999999965
No 176
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.10 E-value=0.0073 Score=56.97 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=86.5
Q ss_pred HHHHHHHHhCCCCccEEEEEee-CChHH---HHHHHHHcCccceecccccccccCCC--ceeec-C---cchhHHHHHhc
Q psy9039 80 RLCAEIRKVLPPSVPVGVQILS-GCNKA---ALATAQAAGLDFIRAESFVFGHMADE--GLMNA-Q---AGPLLRYRKQI 149 (251)
Q Consensus 80 ~~i~~vr~~~~~~~P~Gvn~~~-N~~~~---~~~ia~a~g~~Fir~~~~~~~~~~~~--Gli~~-d---a~e~~~~r~~l 149 (251)
+.++++++..++ +|+.+++.- ..... -.......|++++..|..|--..... |.... + ..++.+.-++.
T Consensus 102 ~~i~~~k~~~~~-~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~ 180 (385)
T PLN02495 102 AEFKQLKEEYPD-RILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK 180 (385)
T ss_pred HHHHHHHhhCCC-CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh
Confidence 345667666643 599999854 23111 12222346788888875443211111 21111 2 22222222222
Q ss_pred CCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC----------------------CC-C-CC---
Q psy9039 150 GADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT----------------------GD-P-AD--- 202 (251)
Q Consensus 150 ~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~----------------------g~-~-~~--- 202 (251)
- .+.++. |-+ |. . ..+..+++.+...|+|+++.+.+-. |. . +.
T Consensus 181 ~--~iPv~v----KLs-Pn-~--t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkp 250 (385)
T PLN02495 181 A--TVPVWA----KMT-PN-I--TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRP 250 (385)
T ss_pred h--cCceEE----EeC-CC-h--hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhH
Confidence 1 233332 221 21 1 2477788888778999987754211 00 0 00
Q ss_pred --HHHHHHHHhcC------CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 203 --VSQLMSVKNAV------DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 --~~~l~~vr~~~------~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+..+.++++.+ ++||+.-||| |.+++.+++. |+.|.|+|++..+|-
T Consensus 251 iAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp 307 (385)
T PLN02495 251 IALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGY 307 (385)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCc
Confidence 12233344443 4899999999 7899888885 999999999998863
No 177
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.09 E-value=0.00096 Score=62.79 Aligned_cols=69 Identities=28% Similarity=0.452 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccEEEecCCCC----CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNAT----GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++|+|..- +..+..+.|.++++.+ ++||++.||| +..++.+.+. ||+|.+|+.|.
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 4445666667999999998521 1223457788888776 5999999999 6888888886 99999999887
No 178
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.07 E-value=0.0025 Score=55.92 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=49.8
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+|-+.+ ++.. +...+.+.++++.+.+.+|+.+|||| +.+++.+++. |+-+|+||...++
T Consensus 47 ~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 47 LGFRGLYIADLDAIM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred CCCCEEEEEeCcccc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 36665544 4443 56667889999999889999999999 6899999997 9999999998776
No 179
>PRK14057 epimerase; Provisional
Probab=97.04 E-value=0.011 Score=52.80 Aligned_cols=179 Identities=11% Similarity=0.084 Sum_probs=101.5
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+-| =|...+.-||.+.+++ |+ + .|+=+-++...|...+..-...|++.
T Consensus 35 ~~el~~l~~~g~-d~lHiDVMDG-~FVPNitfGp~~i~~i-------~~--~--~p~DvHLMV~~P~~~i~~~~~aGad~ 101 (254)
T PRK14057 35 HRYLQQLEALNQ-PLLHLDLMDG-QFCPQFTVGPWAVGQL-------PQ--T--FIKDVHLMVADQWTAAQACVKAGAHC 101 (254)
T ss_pred HHHHHHHHHCCC-CEEEEeccCC-ccCCccccCHHHHHHh-------cc--C--CCeeEEeeeCCHHHHHHHHHHhCCCE
Confidence 455588889999 9987633333 3666666788776655 32 3 47667777766544444444467777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh-hHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD-IKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~-v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
+-..... .....+.+++-++.|.. +.+. -..+.|+.++ +.-+++.+..-. ..+|.+-+-....
T Consensus 102 It~H~Ea----------~~~~~~~l~~Ir~~G~k---~~~~~~~~kaGlAln-P~Tp~e~i~~~l--~~vD~VLvMtV~P 165 (254)
T PRK14057 102 ITLQAEG----------DIHLHHTLSWLGQQTVP---VIGGEMPVIRGISLC-PATPLDVIIPIL--SDVEVIQLLAVNP 165 (254)
T ss_pred EEEeecc----------ccCHHHHHHHHHHcCCC---cccccccceeEEEEC-CCCCHHHHHHHH--HhCCEEEEEEECC
Confidence 6654211 12334555666666641 0000 0001122221 112333331111 2478776644433
Q ss_pred CCC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. ...++++++|+.. ++-+-+=|||+.+|+.++.+ ||.+++||++-.+
T Consensus 166 GfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~ 227 (254)
T PRK14057 166 GYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRD 227 (254)
T ss_pred CCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCC
Confidence 332 2245666666542 46799999999999999886 9999999998654
No 180
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.03 E-value=0.0093 Score=55.91 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
.+..+++|+.+++||++.||| +++++.++++ ||.|-+|-.|+.|-.
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~ 327 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPF 327 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCch
Confidence 566788999999999999999 6899999995 999999999887744
No 181
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.02 E-value=0.0045 Score=55.20 Aligned_cols=47 Identities=47% Similarity=0.779 Sum_probs=35.7
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEE
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGV 54 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i 54 (251)
.+|++||||||+.||.+. =+|..-..|..++.+.+++.. + -.|+ +.+
T Consensus 42 GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~~~-~-p~GV-nvL 88 (254)
T PF03437_consen 42 GVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRREVS-V-PVGV-NVL 88 (254)
T ss_pred CCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHhCC-C-CEEe-eee
Confidence 589999999999999765 235555689999999999985 2 3455 444
No 182
>PLN02535 glycolate oxidase
Probab=96.99 E-value=0.0018 Score=60.64 Aligned_cols=70 Identities=29% Similarity=0.421 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|+++|+|..-.. .+....|.++++.+ ++||++-||| +..++.+.+. ||+|.||+.|..
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 344566666899999999863111 12356777887765 6999999999 7899888886 999999999865
No 183
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.98 E-value=0.0021 Score=56.07 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=49.8
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC---h----HhHHHhhc--CCEEEEeceEeecCe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT---S----DNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~---~----~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
++.+...|+|.+.+... .+.+.++++++.+++||++.||++ + ++++++++ |+|+.+|++|.+..+
T Consensus 149 ~~~a~~~GaD~Ik~~~~-----~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 149 ARIGAELGADIVKTKYT-----GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred HHHHHHHCCCEEEecCC-----CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC
Confidence 34444579999988532 257889999988899999978873 2 56888886 999999999986543
No 184
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.97 E-value=0.015 Score=51.16 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=99.7
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.++++.|.++|+ |.+-+==+-| =|.....-||.+.++ +|+ + .|+=+-++...|...+..-...|++.
T Consensus 28 ~~el~~l~~~g~-d~lHiDVMDG-~FVPNitfGp~~i~~-------i~~--~--~~~DvHLMv~~P~~~i~~~~~aGad~ 94 (228)
T PRK08091 28 NETLTTLSENQL-RLLHFDIADG-QFSPFFTVGAIAIKQ-------FPT--H--CFKDVHLMVRDQFEVAKACVAAGADI 94 (228)
T ss_pred HHHHHHHHHCCC-CEEEEeccCC-CcCCccccCHHHHHH-------hCC--C--CCEEEEeccCCHHHHHHHHHHhCCCE
Confidence 444578889999 9987532222 366655667766544 432 3 57777777766544444434457777
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATG 198 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g 198 (251)
+-..... .++..+.++.-++.|. .+ |.|+.+ .+.-+++.+..-. ..+|.+-+-....|
T Consensus 95 It~H~Ea----------~~~~~~~l~~Ik~~g~-~~--------kaGlal-nP~Tp~~~i~~~l--~~vD~VLiMtV~PG 152 (228)
T PRK08091 95 VTLQVEQ----------THDLALTIEWLAKQKT-TV--------LIGLCL-CPETPISLLEPYL--DQIDLIQILTLDPR 152 (228)
T ss_pred EEEcccC----------cccHHHHHHHHHHCCC-Cc--------eEEEEE-CCCCCHHHHHHHH--hhcCEEEEEEECCC
Confidence 6654211 1234456666666663 11 112111 1112333331111 24777755443333
Q ss_pred CC------CCHHHHHHHHhcC-----CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 199 DP------ADVSQLMSVKNAV-----DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 199 ~~------~~~~~l~~vr~~~-----~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.. ...++++++|+.. +.-+-+=|||+.+|+.++.+ ||.+++||++-..
T Consensus 153 fgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~ 213 (228)
T PRK08091 153 TGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQ 213 (228)
T ss_pred CCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCC
Confidence 21 2246677666542 46699999999999999886 9999999998654
No 185
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.92 E-value=0.014 Score=53.42 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 204 SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+.++++.+ ++||+.-||| |.+++.+++. ||.|.|+|++...|
T Consensus 229 ~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~g 277 (310)
T PRK02506 229 ANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEG 277 (310)
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhC
Confidence 5566777776 6999999999 7899888885 99999999988754
No 186
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.86 E-value=0.011 Score=55.30 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.8
Q ss_pred ccccEEEecCCC---CCC-CCCHHHHHHHHhcCCCCEEEecCC-------------------ChHhHHHhhc---CCEEE
Q psy9039 185 FLSDGLIITGNA---TGD-PADVSQLMSVKNAVDLPILIGSGV-------------------TSDNVEHYMT---ADALI 238 (251)
Q Consensus 185 ~~~D~v~VTG~~---~g~-~~~~~~l~~vr~~~~~PV~vG~GI-------------------~~~~v~~~~~---ADGvI 238 (251)
.|+|.+-||+.. ... .......+++|+.+++||++-||| +++.+.+++. ||.|-
T Consensus 247 ~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 247 AGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred cCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeeh
Confidence 466776555431 111 113455677899999999999998 6788888884 99999
Q ss_pred EeceEeecCe
Q psy9039 239 IGSHFKQGGR 248 (251)
Q Consensus 239 VGS~~~~~g~ 248 (251)
+|..++.|-.
T Consensus 327 ~gR~~iadP~ 336 (361)
T cd04747 327 VGRALLSDPA 336 (361)
T ss_pred hhHHHHhCcH
Confidence 9998877643
No 187
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.85 E-value=0.0013 Score=58.56 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
|.. +.+.++++.+.+++||.+||||+.+++.+++. ||.|++||++..+
T Consensus 61 g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 61 GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhC
Confidence 444 77889999999999999999997799999997 9999999988765
No 188
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.83 E-value=0.0066 Score=53.27 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhcCCCCE--EEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVDLPI--LIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV--~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...++++++++.-.+|| ++.||| ||.+++-+.. |||++|||.+-+.++
T Consensus 193 ~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~ 245 (296)
T COG0214 193 APYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSN 245 (296)
T ss_pred ChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCC
Confidence 34578888888878887 589999 9999888886 999999999877543
No 189
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.81 E-value=0.0044 Score=54.80 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=50.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+|+|-+.+ .|+..+...+.+.++++.+.+ .|+-+|||| |.+++..++. ||=+|+||...+|.
T Consensus 42 ~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p 109 (241)
T PRK14114 42 EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP 109 (241)
T ss_pred CCCCEEEEEECCCcccCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 56666654 566666677788899998887 799999999 6899999997 99999999887764
No 190
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.80 E-value=0.01 Score=51.11 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~ 233 (251)
+....+|+|.+-.+|.........+.|+++.+.. .+-|++||||+++|+.++.+
T Consensus 134 ~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 134 EQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHH
Confidence 3334469999999999877767778887765543 57899999999999998875
No 191
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.80 E-value=0.0031 Score=56.00 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC-------hHhHHHhhc--CCEEEEeceEeecC
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT-------SDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-------~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...|+|++.++. ..+.+.++++.+.+++||++.|||+ .+++.++++ |+|+.+|+.+.+..
T Consensus 163 ~~a~~~GADyikt~~-----~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 163 RLGAELGADIVKTPY-----TGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHCCCEEeccC-----CCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 334447999999763 2367889998888899999999997 677888886 99999999987643
No 192
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.79 E-value=0.02 Score=53.67 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=51.1
Q ss_pred HHHHhhhcc-ccEEEecCCCCC--CCC-------CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 178 TAKAASFFL-SDGLIITGNATG--DPA-------DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 178 ~a~~a~~~~-~D~v~VTG~~~g--~~~-------~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
+++..+..| +|.+-+++.... ... ......++|+.+.+||++-|+| +++++.++++ ||-|.+|..|
T Consensus 242 la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ 321 (363)
T COG1902 242 LAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPF 321 (363)
T ss_pred HHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhh
Confidence 333334456 688877665432 111 1144556888888999999999 6899999994 9999999999
Q ss_pred eecCee
Q psy9039 244 KQGGRT 249 (251)
Q Consensus 244 ~~~g~~ 249 (251)
+.|-+|
T Consensus 322 ladP~~ 327 (363)
T COG1902 322 LADPDL 327 (363)
T ss_pred hcCccH
Confidence 887554
No 193
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.76 E-value=0.0022 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=29.0
Q ss_pred CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 214 DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+||++.||| ++.++.+.+. ||+|.+||.|..
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~ 289 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLAR 289 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHh
Confidence 3899999999 7999988886 999999999976
No 194
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.70 E-value=0.0024 Score=60.06 Aligned_cols=71 Identities=27% Similarity=0.456 Sum_probs=52.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
..+-++.+...|+|++.|+|..--. .+..+.|.++++.. ++||++-||| +..++.+.+. ||+|.+|+.|..
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY 334 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence 3444566666799999999853111 22346677777654 6999999999 6888888886 999999998864
No 195
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.69 E-value=0.0059 Score=55.12 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCC--CCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVD--LPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~--~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ ++.|...++|++.+- .-..+.++++++..+ +|+.+-||||++|+.++.+ +|++.||+-.
T Consensus 197 tlee-a~~A~~~gaDyI~lD------~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 197 TEEQ-VREAVAAGADIIMFD------NRTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred CHHH-HHHHHHcCCCEEEEC------CCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 4444 556666799999882 245677888777654 7777999999999999997 9999999743
No 196
>PLN02363 phosphoribosylanthranilate isomerase
Probab=96.69 E-value=0.011 Score=52.89 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=41.5
Q ss_pred cccEEEecC--CCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEee-cCe
Q psy9039 186 LSDGLIITG--NATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ-GGR 248 (251)
Q Consensus 186 ~~D~v~VTG--~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~-~g~ 248 (251)
.+|.+.+=. ..+|..-+++.+....-....|++++|||+++|+++++. ..|+=|-|.+.. .|.
T Consensus 169 ~~D~~LlDs~~GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 169 LADWILVDSATGGSGKGFNWQNFKLPSVRSRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGICGPDGI 237 (256)
T ss_pred cCCEEEEeCCCCCCCCccCHHHhcccccccCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence 356655432 233445566655311101246999999999999999874 889999999874 463
No 197
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.69 E-value=0.0038 Score=60.51 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=52.7
Q ss_pred cccHHHHHHHhhhccccEEEe---------cCCCCCC-CCCHHHHHHHHh---cCCCCEEEecCC-ChHhHHHhhc--CC
Q psy9039 172 DVDITETAKAASFFLSDGLII---------TGNATGD-PADVSQLMSVKN---AVDLPILIGSGV-TSDNVEHYMT--AD 235 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~V---------TG~~~g~-~~~~~~l~~vr~---~~~~PV~vG~GI-~~~~v~~~~~--AD 235 (251)
+....+.++.+...|+|++.| |-.-+|. .+.+..+.++.+ ..++||++-||| ++.++.+.+. ||
T Consensus 275 nv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~ 354 (479)
T PRK07807 275 NVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGAS 354 (479)
T ss_pred ccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 444556667776679999853 3333332 245566666665 357999999999 7999998886 99
Q ss_pred EEEEeceEe
Q psy9039 236 ALIIGSHFK 244 (251)
Q Consensus 236 GvIVGS~~~ 244 (251)
++.+||.|-
T Consensus 355 ~v~~g~~~a 363 (479)
T PRK07807 355 NVMIGSWFA 363 (479)
T ss_pred eeeccHhhc
Confidence 999999984
No 198
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.67 E-value=0.00077 Score=58.99 Aligned_cols=64 Identities=20% Similarity=0.426 Sum_probs=49.3
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+++|-+-+ .|...+...+.+.++++.+.+.+|+-+|||| +.+++.+++. ||-+|+||...+|..
T Consensus 41 ~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~ 110 (229)
T PF00977_consen 41 QGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPE 110 (229)
T ss_dssp TT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCH
T ss_pred cCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchh
Confidence 45555544 4555555556788999999999999999999 6899999996 999999998877643
No 199
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.61 E-value=0.0062 Score=54.50 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
+...+.+.++++++ +++||-+||||+.+++++++. ||=||+||..++||.
T Consensus 68 g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 68 DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 55556788999988 889999999997799999996 999999999888744
No 200
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.61 E-value=0.026 Score=50.16 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~ 233 (251)
+.....|+|.+..+|.........+.|+++.+.. +.-|++||||+++|+.++..
T Consensus 135 ~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~ 189 (248)
T PRK11572 135 KQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLD 189 (248)
T ss_pred HHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 3344569999999998766555567777766644 32399999999999998853
No 201
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.56 E-value=0.0082 Score=54.32 Aligned_cols=155 Identities=21% Similarity=0.285 Sum_probs=87.0
Q ss_pred HHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcch-hhhhhH
Q psy9039 83 AEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVL-VFTDIK 161 (251)
Q Consensus 83 ~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~-i~a~v~ 161 (251)
+...+..+ +|+.+.+=-.........|...|.+.+... +.....+ -....+.++.++++++|.. +. -+..+-
T Consensus 67 ~~~a~~~~--vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d---~s~~~~~-eni~~t~~v~~~a~~~gv~-veaE~ghlG 139 (281)
T PRK06806 67 VAAAKQAK--VPVAVHFDHGMTFEKIKEALEIGFTSVMFD---GSHLPLE-ENIQKTKEIVELAKQYGAT-VEAEIGRVG 139 (281)
T ss_pred HHHHHHCC--CCEEEECCCCCCHHHHHHHHHcCCCEEEEc---CCCCCHH-HHHHHHHHHHHHHHHcCCe-EEEEeeeEC
Confidence 34445567 899988733222344555566676666642 1111110 0111256666777776651 10 000000
Q ss_pred -hhccCCCC-CCcccHHHHHHHh-hhccccEEEec-CC----CCCCC-CCHHHHHHHHhcCCCCEEEec--CCChHhHHH
Q psy9039 162 -KKHSSHAI-TADVDITETAKAA-SFFLSDGLIIT-GN----ATGDP-ADVSQLMSVKNAVDLPILIGS--GVTSDNVEH 230 (251)
Q Consensus 162 -~k~~~~~~-~~~~~i~~~a~~a-~~~~~D~v~VT-G~----~~g~~-~~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~ 230 (251)
...+.... .+--+.++ ++.+ +.-|+|++.++ |. ..+.+ -+.+.|+++++.+++|+++=| ||+++|+++
T Consensus 140 ~~d~~~~~~g~s~t~~ee-a~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~ 218 (281)
T PRK06806 140 GSEDGSEDIEMLLTSTTE-AKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKK 218 (281)
T ss_pred CccCCcccccceeCCHHH-HHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 00000000 00112333 3333 34589999882 32 22222 256889999999999999999 999999999
Q ss_pred hhc--CCEEEEeceEee
Q psy9039 231 YMT--ADALIIGSHFKQ 245 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~~ 245 (251)
+.+ ++++-|.|.|..
T Consensus 219 ~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 219 CIQHGIRKINVATATFN 235 (281)
T ss_pred HHHcCCcEEEEhHHHHH
Confidence 996 999999998864
No 202
>PLN02979 glycolate oxidase
Probab=96.52 E-value=0.0047 Score=57.71 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=52.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-|+.+...|+|+++|+|..... ++..+.|.++++.+ ++||++-||| +..++.+.+. ||++-+|+.|.
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 444556666799999999974322 13356777787765 5999999999 6888877775 99999999876
No 203
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.021 Score=50.10 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=92.2
Q ss_pred cEEEEEeeCCh-----HHH---HHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhc
Q psy9039 94 PVGVQILSGCN-----KAA---LATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKH 164 (251)
Q Consensus 94 P~Gvn~~~N~~-----~~~---~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~ 164 (251)
|.++.++=|.. .++ .-+|.+ .+-+|++.. ..+++--+.||.-|.++..+.+-.++..++
T Consensus 67 ~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlE-----Vi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl------- 134 (262)
T COG2022 67 PLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLE-----VIGDEKTLLPDPIETLKAAEQLVKEGFVVL------- 134 (262)
T ss_pred hcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEE-----EecCCcccCCChHHHHHHHHHHHhCCCEEe-------
Confidence 55666666652 222 333333 234787763 355677788999999999999877777775
Q ss_pred cCCCCCCcccHHHHHHHhhhccccEEEecCCCCC--C-CCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 165 SSHAITADVDITETAKAASFFLSDGLIITGNATG--D-PADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 165 ~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g--~-~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
|.+++| . -.++.-+..||.++--=|+--| . ..+...|+-+++..++||+|=-|| +|.++.+.++ ||+|.
T Consensus 135 --PY~~dD-~--v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL 209 (262)
T COG2022 135 --PYTTDD-P--VLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVL 209 (262)
T ss_pred --eccCCC-H--HHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceee
Confidence 332333 2 2345555568887755443222 2 224567888888889999999999 8999999997 99999
Q ss_pred EeceEeec
Q psy9039 239 IGSHFKQG 246 (251)
Q Consensus 239 VGS~~~~~ 246 (251)
+-|++-+-
T Consensus 210 ~NTAiA~A 217 (262)
T COG2022 210 LNTAIARA 217 (262)
T ss_pred hhhHhhcc
Confidence 99887543
No 204
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.0062 Score=53.71 Aligned_cols=58 Identities=22% Similarity=0.515 Sum_probs=50.8
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 189 GLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 189 ~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.+=.+|+..+.+.+.+.++++.+.++.||=+|||| +.+.+..++. ++-+|+||.-++|
T Consensus 50 lVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~ 110 (241)
T COG0106 50 LVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN 110 (241)
T ss_pred EeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecC
Confidence 33458888888888899999999999999999999 6788999996 9999999988776
No 205
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.47 E-value=0.0066 Score=58.36 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=50.0
Q ss_pred ccHHHHHHHhhhccccEEEec-CCC----C----C-CCCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCE
Q psy9039 173 VDITETAKAASFFLSDGLIIT-GNA----T----G-DPADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADA 236 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VT-G~~----~----g-~~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADG 236 (251)
....+.++.+...|+|++.|+ |.. + + ..+....+.++++. .++||++-||| ++.++.+.+. ||.
T Consensus 273 v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 273 VATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred CCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 334555666666799999774 221 1 1 11334555555443 57999999999 7999988886 999
Q ss_pred EEEeceEe
Q psy9039 237 LIIGSHFK 244 (251)
Q Consensus 237 vIVGS~~~ 244 (251)
|.+||.|-
T Consensus 353 V~~G~~~a 360 (450)
T TIGR01302 353 VMLGSLLA 360 (450)
T ss_pred EEECchhh
Confidence 99999884
No 206
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.45 E-value=0.011 Score=53.20 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=49.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+++ .+..+...++|++.+-- -..+.++++++.. ++|+.+.||||++|+.++.+ +|++.|||-..
T Consensus 191 s~e-ea~~A~~~gaDyI~ld~------~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 191 TLE-QLKEALEAGADIIMLDN------MSPEELREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred CHH-HHHHHHHcCCCEEEECC------cCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeec
Confidence 443 35566567999998732 2356777766655 59999999999999999997 99999999654
No 207
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.45 E-value=0.011 Score=55.37 Aligned_cols=70 Identities=29% Similarity=0.371 Sum_probs=53.1
Q ss_pred HHHHHHhhhccccEEEecCCCCC----CCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 176 TETAKAASFFLSDGLIITGNATG----DPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g----~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.++.+...|+|++.||+..-- .++.++.|.++++.+ ++||++-||| +..++.+.+. ||+|.||-.|..
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 45566666689999999985311 123457788888776 5999999999 6888888886 999999977543
No 208
>KOG3111|consensus
Probab=96.45 E-value=0.089 Score=45.04 Aligned_cols=170 Identities=13% Similarity=0.174 Sum_probs=96.9
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc--EEEEEee-CCh--HHHHHHHHHc
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP--VGVQILS-GCN--KAALATAQAA 114 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P--~Gvn~~~-N~~--~~~~~ia~a~ 114 (251)
+|.+.+.++|+ |.|-+-=+.| -|-..+.-||-++.+ +|+.+. .| |=+-++. |+. +..++.|
T Consensus 21 ~e~~~~l~~Ga-dwlHlDVMDg-~FVpNiT~G~pvV~s-------lR~~~~--~~~ffD~HmMV~~Peq~V~~~a~a--- 86 (224)
T KOG3111|consen 21 AECKKMLDAGA-DWLHLDVMDG-HFVPNITFGPPVVES-------LRKHTG--ADPFFDVHMMVENPEQWVDQMAKA--- 86 (224)
T ss_pred HHHHHHHHcCC-CeEEEeeecc-cccCCcccchHHHHH-------HHhccC--CCcceeEEEeecCHHHHHHHHHhc---
Confidence 44477889999 9998754444 477777788777555 455544 23 3333333 432 3334443
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
|++.+-.. +. +.. +..++.++-++.|. ++ |..+ .+.-+.+.+...+. -+|.+.|--
T Consensus 87 gas~~tfH--~E--~~q------~~~~lv~~ir~~Gm---k~--------G~al-kPgT~Ve~~~~~~~--~~D~vLvMt 142 (224)
T KOG3111|consen 87 GASLFTFH--YE--ATQ------KPAELVEKIREKGM---KV--------GLAL-KPGTPVEDLEPLAE--HVDMVLVMT 142 (224)
T ss_pred CcceEEEE--Ee--ecc------CHHHHHHHHHHcCC---ee--------eEEe-CCCCcHHHHHHhhc--cccEEEEEE
Confidence 34333222 11 111 23556666666654 22 1111 12223333322222 367766654
Q ss_pred CCCCCCC------CHHHHHHHHhcCCCCEE-EecCCChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 195 NATGDPA------DVSQLMSVKNAVDLPIL-IGSGVTSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 195 ~~~g~~~------~~~~l~~vr~~~~~PV~-vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
-+.|... -+.+++.+|+....+.+ +-||++++|+....+ |+.++.||+..+-+
T Consensus 143 VePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~ 204 (224)
T KOG3111|consen 143 VEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAA 204 (224)
T ss_pred ecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCcCcchHHHHHHcCCCEEEecceeecCC
Confidence 4444432 24677788866655555 999999999998885 99999999987654
No 209
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=96.39 E-value=0.014 Score=53.96 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc---CCEEEEeceEeecCe
Q psy9039 203 VSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT---ADALIIGSHFKQGGR 248 (251)
Q Consensus 203 ~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~---ADGvIVGS~~~~~g~ 248 (251)
....+.+|+.+++||++.|||+ ++.+.+++. ||.|-+|-.|+-|-+
T Consensus 280 ~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd 329 (341)
T PF00724_consen 280 LDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPD 329 (341)
T ss_dssp HHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TT
T ss_pred hhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCch
Confidence 4567788999999999999995 666888773 999999988876643
No 210
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.37 E-value=0.0058 Score=54.06 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=45.5
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
-|.. |...+.+.++++.+.+.+|+-+|||| |.+++..++. ||=+++||...++-
T Consensus 54 d~a~-g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p 110 (243)
T TIGR01919 54 DAAF-GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENP 110 (243)
T ss_pred CCCC-CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCH
Confidence 4444 55667788999999899999999999 6899999996 99999999977653
No 211
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.34 E-value=0.011 Score=57.47 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=50.8
Q ss_pred cHHHHHHHhhhccccEEEecCCC---------CCC-CCCHHHHHHHHhc---CCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 174 DITETAKAASFFLSDGLIITGNA---------TGD-PADVSQLMSVKNA---VDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~---------~g~-~~~~~~l~~vr~~---~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
...+.++.+...|+|++.|.+.. ++. .++.+.+.++++. .++||++-||| ++.++.+.+. ||.|
T Consensus 278 ~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 278 ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEE
Confidence 33555666666799999763211 111 2445666666654 36999999999 7999888886 9999
Q ss_pred EEeceEee
Q psy9039 238 IIGSHFKQ 245 (251)
Q Consensus 238 IVGS~~~~ 245 (251)
.+||+|-.
T Consensus 358 ~~G~~~a~ 365 (486)
T PRK05567 358 MLGSMLAG 365 (486)
T ss_pred EECccccc
Confidence 99999854
No 212
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.34 E-value=0.077 Score=48.31 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=51.5
Q ss_pred HHHhhhccccEEEec-CCCCCC-----C-CCHHHHHHHHhcC-CCCEEEecC--CChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAASFFLSDGLIIT-GNATGD-----P-ADVSQLMSVKNAV-DLPILIGSG--VTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~~~~~D~v~VT-G~~~g~-----~-~~~~~l~~vr~~~-~~PV~vG~G--I~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|+.+..-|+|++.++ |.-.|. + -+.+.|+++++.+ ++|+++=|| |+.++++++.+ ++++-|+|.+..
T Consensus 159 a~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~ 237 (293)
T PRK07315 159 AKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI 237 (293)
T ss_pred HHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH
Confidence 444334589999887 433121 2 3568999999998 599999888 99999999996 999999998763
No 213
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.34 E-value=0.012 Score=52.71 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=46.6
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
+++ .++.|...|+|++.+-- ...+.++++.+.. .+|+.+-||||.+|+.++.+ +|++.|| ++.+
T Consensus 187 t~e-ea~~A~~~gaDyI~ld~------~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvg-ait~ 254 (265)
T TIGR00078 187 SLE-EAEEAAEAGADIIMLDN------MKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSG-ALTH 254 (265)
T ss_pred CHH-HHHHHHHcCCCEEEECC------CCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeC-HHHc
Confidence 444 45666678999998832 2345566555443 38999999999999999997 9999994 4444
No 214
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.32 E-value=0.0074 Score=57.02 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=50.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCC------------CCCHHHHHHHHhc-------CCCCEEEecCC-ChHhHHHhhc
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGD------------PADVSQLMSVKNA-------VDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~------------~~~~~~l~~vr~~-------~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
...++++.++..++|++.|+|..-|. .+....|.++++. .++||++.||| |+.++.+++.
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 34555555555679999999975221 1223445555443 26999999999 7899888886
Q ss_pred --CCEEEEeceEe
Q psy9039 234 --ADALIIGSHFK 244 (251)
Q Consensus 234 --ADGvIVGS~~~ 244 (251)
||+|-+|+.|.
T Consensus 306 LGAd~V~ig~~~l 318 (392)
T cd02808 306 LGADAVGIGTAAL 318 (392)
T ss_pred cCCCeeeechHHH
Confidence 99999999886
No 215
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.01 Score=52.00 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=53.3
Q ss_pred ccccEEE---ecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeec
Q psy9039 185 FLSDGLI---ITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~---VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
.|+|=++ +|-++.+..+..+.++++-+.+.+|+.+|||| +.+++++++. ||=+-+.|+=++|
T Consensus 42 ~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~ 109 (256)
T COG0107 42 EGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKD 109 (256)
T ss_pred cCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcC
Confidence 4888775 47777777777899999999999999999999 6899999996 9999999886655
No 216
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.30 E-value=0.01 Score=57.76 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=48.4
Q ss_pred cHHHHHHHhhhccccEEEec-CCC---C-----CC-CCCHHHHHHHH---hcCCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 174 DITETAKAASFFLSDGLIIT-GNA---T-----GD-PADVSQLMSVK---NAVDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VT-G~~---~-----g~-~~~~~~l~~vr---~~~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
...+.++.+...|+|++.|. |.. + +. -+....+.+++ +..++||++-||| ++.++.+++. ||+|
T Consensus 291 ~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~V 370 (495)
T PTZ00314 291 VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCV 370 (495)
T ss_pred CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEE
Confidence 33455666666799999763 111 1 11 13334444443 3357999999999 7999888886 9999
Q ss_pred EEeceEee
Q psy9039 238 IIGSHFKQ 245 (251)
Q Consensus 238 IVGS~~~~ 245 (251)
.+||.|..
T Consensus 371 m~G~~~a~ 378 (495)
T PTZ00314 371 MLGSLLAG 378 (495)
T ss_pred EECchhcc
Confidence 99999854
No 217
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.28 E-value=0.019 Score=55.31 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred cccEEEec--CCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 186 LSDGLIIT--GNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 186 ~~D~v~VT--G~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+|++.+= ...+|..-+++.+... ...|++++||++|+|++++.. ..|+=|-|.+..
T Consensus 374 ~~d~~LlDs~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~ 434 (454)
T PRK09427 374 HVDRYLLDNGQGGTGQTFDWSLLPGQ---SLDNVLLAGGLNPDNCQQAAQLGCAGLDFNSGVES 434 (454)
T ss_pred CCCEEEEcCCCCCCCCccChHHhhhc---ccCCEEEECCCCHHHHHHHHhcCCCEEEeCCcccC
Confidence 46666552 1234555567766532 267999999999999999876 899999998874
No 218
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.27 E-value=0.025 Score=48.58 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=84.4
Q ss_pred CCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE--EEEEeeCChHHHHHHHHHcCccceecccccc
Q psy9039 49 GVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV--GVQILSGCNKAALATAQAAGLDFIRAESFVF 126 (251)
Q Consensus 49 Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~--Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~ 126 (251)
-+ +++.+ |.||-.. -|| ..++++|+.+. +|+ =++.+.|.+......+...|++.+-.+.+.+
T Consensus 28 ~~-~~vk~----g~~l~~~--~G~-------~~v~~ir~~~~--i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g 91 (215)
T PRK13813 28 YV-DAIKV----GWPLVLA--SGL-------GIIEELKRYAP--VIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTG 91 (215)
T ss_pred cC-CEEEE----cHHHHHh--hCH-------HHHHHHHhcCC--EEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCC
Confidence 46 77754 6776543 354 45666776655 563 3343444433222444557777777653222
Q ss_pred cccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHH
Q psy9039 127 GHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQL 206 (251)
Q Consensus 127 ~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l 206 (251)
. ....+..++.++.|. .+.+.. .+.+-.....-...+..+++-+...|.++..... ...+++
T Consensus 92 ----~-----~~l~~~i~~~~~~g~-~~~v~~--~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~------~~~~~i 153 (215)
T PRK13813 92 ----R-----DSLKAVVEAAAESGG-KVFVVV--EMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA------TRPERV 153 (215)
T ss_pred ----H-----HHHHHHHHHHHhcCC-eEEEEE--eCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC------CcchhH
Confidence 1 123345566666654 222221 1110000000001223333333335666654322 224667
Q ss_pred HHHHhcCCCC-EEEecCCChH--hHHHhhc--CCEEEEeceEeecC
Q psy9039 207 MSVKNAVDLP-ILIGSGVTSD--NVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 207 ~~vr~~~~~P-V~vG~GI~~~--~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+++|+..+.+ .++=+||+++ ++.++++ ||++++||++.+..
T Consensus 154 ~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~ 199 (215)
T PRK13813 154 RYIRSRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRSIYNAA 199 (215)
T ss_pred HHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCCC
Confidence 7777766433 2255699875 4888886 99999999987643
No 219
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.23 E-value=0.014 Score=52.45 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=44.2
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHH----HHhcCCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMS----VKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~----vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++ +..+...++|++.+-.. ..+.+++ +++..++|+.+.||||++|+.++.. +|++.+||.+
T Consensus 190 t~ee-a~~A~~~gaD~I~ld~~------~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 190 TLEE-AEEALEAGADIIMLDNM------SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred CHHH-HHHHHHcCCCEEEECCC------CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 4444 45555568999988332 2233443 3332378999999999999999996 9999997654
No 220
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.21 E-value=0.012 Score=57.95 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=49.4
Q ss_pred ccccEEEe---cCCCCCCCCC---HHHHHHHHhcCCCCEEEecCC-Ch-----------HhHHHhhc--CCEEEEeceEe
Q psy9039 185 FLSDGLII---TGNATGDPAD---VSQLMSVKNAVDLPILIGSGV-TS-----------DNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~---~~~l~~vr~~~~~PV~vG~GI-~~-----------~~v~~~~~--ADGvIVGS~~~ 244 (251)
.|+|-+.+ ||++.+.... .+.++++.+.+.+|+.+|||| +. +++++++. ||=|++||+.+
T Consensus 279 ~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av 358 (538)
T PLN02617 279 DGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAV 358 (538)
T ss_pred cCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHH
Confidence 48998865 7766544333 678889988899999999999 54 67899996 99999999766
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
++
T Consensus 359 ~~ 360 (538)
T PLN02617 359 YA 360 (538)
T ss_pred hC
Confidence 64
No 221
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=96.20 E-value=0.0035 Score=53.57 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=41.4
Q ss_pred cEEEecCCC--CCCCCCHHHHHHHHhc-CCCCEEEecCCChHhHHHhhc---CCEEEEeceEeec-Ce
Q psy9039 188 DGLIITGNA--TGDPADVSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQG-GR 248 (251)
Q Consensus 188 D~v~VTG~~--~g~~~~~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~-g~ 248 (251)
|++.+=+.. +|..-+++.++++.+. .+.|++++|||+|+|+++++. ..|+=|-|.+..+ |+
T Consensus 118 d~~LlD~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 118 DYFLLDSGSGGTGKTFDWSLLKKIVESYSPKPVILAGGLNPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp SEEEEESSSTSSSS---GGGGCCCHHT-GTSTEEEESS--TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred cEEeEccCCCcCCcccCHHHhhhhhhhcccCcEEEEcCCChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 666554322 3444466777766653 489999999999999999985 9999999998876 64
No 222
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.20 E-value=0.0092 Score=55.91 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=52.1
Q ss_pred HHHHHHhhhccccEEEecCCCCCC----CCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGD----PADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~----~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+-++.+...|+|+++|+|..-.. ++..+.|.++++.+ ++||++-||| +..++.+.+. ||++-||..|.
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 344556666799999999974222 23356777777764 5999999999 6888887776 99999998875
No 223
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.20 E-value=0.021 Score=50.22 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=46.9
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
+|+|-+.+ .+.. +...+.+.++++.+.+..|+-+|||| |.+++++++. ||=+++||...++-
T Consensus 42 ~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p 109 (232)
T PRK13586 42 EGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNF 109 (232)
T ss_pred CCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence 45555544 4443 55556788988888543599999999 6899999997 99999999887763
No 224
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=96.18 E-value=0.013 Score=56.89 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHHHHHHHHcCccceecccccccccCCCceee----cCcchhHHH
Q psy9039 71 GPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAALATAQAAGLDFIRAESFVFGHMADEGLMN----AQAGPLLRY 145 (251)
Q Consensus 71 gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~----~da~e~~~~ 145 (251)
|..+.+-|+..+.++........-+++|.++-++ ...+.+- |.+.++.....| ...+|+.+ |+.++..++
T Consensus 68 Gq~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig---~krLv~kara~G--~~I~gvvIsAGIP~le~A~El 142 (717)
T COG4981 68 GQVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIG---GKRLVQKARASG--APIDGVVISAGIPSLEEAVEL 142 (717)
T ss_pred cccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCC---hHHHHHHHHhcC--CCcceEEEecCCCcHHHHHHH
Confidence 4555556777788877665543468888766553 2222221 124444432222 33555543 456777778
Q ss_pred HHhcCCCcchhhhhhHhhccCCCCCCcccHHHH---HHHhhh--ccccEEEecCCCCCCCCCH--------HHHHHHHhc
Q psy9039 146 RKQIGADNVLVFTDIKKKHSSHAITADVDITET---AKAASF--FLSDGLIITGNATGDPADV--------SQLMSVKNA 212 (251)
Q Consensus 146 r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~---a~~a~~--~~~D~v~VTG~~~g~~~~~--------~~l~~vr~~ 212 (251)
-+.|+.+.++.++ .|-| +++++ .+-|.. ...=.+=+||.++|...+. ....++|++
T Consensus 143 I~~L~~~G~~yv~---fKPG--------tIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~ 211 (717)
T COG4981 143 IEELGDDGFPYVA---FKPG--------TIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSR 211 (717)
T ss_pred HHHHhhcCceeEE---ecCC--------cHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcC
Confidence 8888776666653 2321 33333 222322 2445567899888875432 234578888
Q ss_pred CCCCEEEecCC-ChHhHHHhhc-------------CCEEEEeceEee
Q psy9039 213 VDLPILIGSGV-TSDNVEHYMT-------------ADALIIGSHFKQ 245 (251)
Q Consensus 213 ~~~PV~vG~GI-~~~~v~~~~~-------------ADGvIVGS~~~~ 245 (251)
-++-+|+|||| +++..+.++. -||+.|||+.+-
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 89999999999 8999887762 599999998753
No 225
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.13 E-value=0.0097 Score=53.21 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHh-------HHHhhc--CCEEEEeceEeecC
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDN-------VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~-------v~~~~~--ADGvIVGS~~~~~g 247 (251)
+.+...|+|.+=++ ...+.+.++++.+.+++||.+.|||+.+| +.++++ |+|+.+|+.+.+..
T Consensus 167 ~~a~e~GAD~vKt~-----~~~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~ 238 (267)
T PRK07226 167 RVAAELGADIVKTN-----YTGDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHE 238 (267)
T ss_pred HHHHHHCCCEEeeC-----CCCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCC
Confidence 33334799998433 33457888888887889999999998543 555555 99999999987654
No 226
>PRK06801 hypothetical protein; Provisional
Probab=96.05 E-value=0.18 Score=45.83 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecC------cchhHHHHHhcCC
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQ------AGPLLRYRKQIGA 151 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~d------a~e~~~~r~~l~~ 151 (251)
+..+++++.+..+ +|+++++=-........-|...|.+-+.. +|--.+. ..++.+++++++.
T Consensus 62 ~~~~~~~~a~~~~--vpV~lHlDH~~~~e~i~~Ai~~GftSVm~----------D~S~l~~eeNi~~t~~v~~~a~~~gv 129 (286)
T PRK06801 62 LVEAVKFEAARHD--IPVVLNLDHGLHFEAVVRALRLGFSSVMF----------DGSTLEYEENVRQTREVVKMCHAVGV 129 (286)
T ss_pred HHHHHHHHHHHCC--CCEEEECCCCCCHHHHHHHHHhCCcEEEE----------cCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5556666776777 89999863222233344444444333332 1111121 5566667777765
Q ss_pred Ccc-hhhhhhHhhccC-CCC---CCcccHHHHHHHhh-hccccEEEec-CCCCC---C-C-CCHHHHHHHHhcCCCCEEE
Q psy9039 152 DNV-LVFTDIKKKHSS-HAI---TADVDITETAKAAS-FFLSDGLIIT-GNATG---D-P-ADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 152 ~~i-~i~a~v~~k~~~-~~~---~~~~~i~~~a~~a~-~~~~D~v~VT-G~~~g---~-~-~~~~~l~~vr~~~~~PV~v 219 (251)
+ + ..+..+-.+-.- ... .+.-+..+.++... ..|+|++.++ |...| . + -+.+.++++++.+++|+++
T Consensus 130 ~-VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVl 208 (286)
T PRK06801 130 S-VEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVL 208 (286)
T ss_pred e-EEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 1 2 112111100000 000 00012223333333 4689999872 22222 1 2 3578999999999999999
Q ss_pred ecC--CChHhHHHhhc--CCEEEEeceEe
Q psy9039 220 GSG--VTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 220 G~G--I~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
=|| |+.++++++.+ ++.+=|+|.|.
T Consensus 209 HGGSgi~~e~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 209 HGGSGISDADFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred ECCCCCCHHHHHHHHHcCCcEEEehhHHH
Confidence 888 99999999986 99999999874
No 227
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.05 E-value=0.022 Score=51.59 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=52.8
Q ss_pred HHHhh-hccccEEEec-CCCCCC----C-CCHHHHHHHHhcCCCCEEEec--CCChHhHHHhhc--CCEEEEeceEee
Q psy9039 179 AKAAS-FFLSDGLIIT-GNATGD----P-ADVSQLMSVKNAVDLPILIGS--GVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 179 a~~a~-~~~~D~v~VT-G~~~g~----~-~~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++.+. ..|+|++.++ |...|. + -+.+.|+++++.+++|+++=| ||+.+|++++.+ ++++=|+|.+..
T Consensus 158 a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 158 AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 44444 3699999985 653332 1 246889999999999999988 999999999996 999999998753
No 228
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.05 E-value=0.02 Score=52.73 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=51.6
Q ss_pred HHHHHHhhhccccEEEec-C--CC------C--CCC-CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 176 TETAKAASFFLSDGLIIT-G--NA------T--GDP-ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT-G--~~------~--g~~-~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+.++.+...|+|++.|+ | .. + +.. ..+..+.++++..++||++-||| +..++.+.+. ||+|.+|
T Consensus 148 ~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 148 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 445566666799999887 3 21 1 222 13457888888889999999999 6888888885 9999999
Q ss_pred ceEe
Q psy9039 241 SHFK 244 (251)
Q Consensus 241 S~~~ 244 (251)
+.|-
T Consensus 228 ~~~a 231 (321)
T TIGR01306 228 SLFA 231 (321)
T ss_pred hhhc
Confidence 9883
No 229
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.00 E-value=0.024 Score=51.21 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=47.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++++ +..|...++|++.. + ....+.++++.+.. ++|+.+-||||.+|++++.. +|++.+|+-.
T Consensus 198 tlee-a~eA~~~gaD~I~L-D-----~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt 264 (277)
T PRK05742 198 SLDE-LRQALAAGADIVML-D-----ELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred CHHH-HHHHHHcCCCEEEE-C-----CCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhh
Confidence 4444 45566678999866 2 22456666655544 79999999999999999997 9999999854
No 230
>PLN02411 12-oxophytodienoate reductase
Probab=95.86 E-value=0.0063 Score=57.49 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEeecCee
Q psy9039 205 QLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQGGRT 249 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~~g~~ 249 (251)
..+++|+.+++||++.||++++++.+++. ||.|-+|-.|+-|-+|
T Consensus 304 ~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl 351 (391)
T PLN02411 304 LMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDL 351 (391)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccH
Confidence 45789999999999999999888888884 9999999998877544
No 231
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.76 E-value=0.17 Score=43.95 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH-HHHHcCccceec
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA-TAQAAGLDFIRA 121 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~-ia~a~g~~Fir~ 121 (251)
+.|.+ .+ |.+.| |.|+-.. -| .+.++++|+.+++ .|+-+.+-..+...... .+...|++++-+
T Consensus 23 ~~l~~-~v-~~~kv----G~~l~~~--~G-------~~~i~~lk~~~~~-~~v~~DLK~~Di~~~v~~~~~~~Gad~vTv 86 (216)
T PRK13306 23 KKVAE-EV-DIIEV----GTILLLA--EG-------MKAVRVLRALYPD-KIIVADTKIADAGKILAKMAFEAGADWVTV 86 (216)
T ss_pred HHccc-cC-CEEEE----ChHHHHH--hC-------HHHHHHHHHHCCC-CEEEEEEeecCCcHHHHHHHHHCCCCEEEE
Confidence 44443 57 88864 6665542 23 3567788877443 48888777776432222 355678888776
Q ss_pred ccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhcc-ccEEEecCCC---C
Q psy9039 122 ESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFL-SDGLIITGNA---T 197 (251)
Q Consensus 122 ~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~-~D~v~VTG~~---~ 197 (251)
....+ . . -..+..+..++.+. ++. +.++++. +.+++ +.....+ .|.+...+.. .
T Consensus 87 H~~a~----~-~----~i~~~~~~~~~~g~---~~~--------V~llts~-~~~~l-~~~~~~~~~~~vl~~a~~~~~~ 144 (216)
T PRK13306 87 ICAAH----I-P----TIKAALKVAKEFNG---EIQ--------IELYGNW-TWEQA-QQWRDAGISQVIYHRSRDAQLA 144 (216)
T ss_pred eCCCC----H-H----HHHHHHHHHHHcCC---EEE--------EEECCCC-CHHHH-HHHHcCChhhhhhhhhhhhhhc
Confidence 52111 0 0 01223333333332 111 1111221 22222 1111111 2333333322 2
Q ss_pred CCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEee
Q psy9039 198 GDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
|..-....+.++|+.. +.-+.|-+||+++++....+ ||.+||||++-+
T Consensus 145 G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~ 196 (216)
T PRK13306 145 GVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRG 196 (216)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccC
Confidence 2222233344444432 34589999999999888776 999999999864
No 232
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.76 E-value=0.036 Score=44.53 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=50.0
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
..+.+.++.++.+....+|.+++|+..+...+.. +.++++|+.. +++|++||.+.+++.+++.+ .|++|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE
Confidence 3446778888888878999999999875544444 5566777753 67888888887777777765 77765
No 233
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=95.73 E-value=0.0071 Score=54.00 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=35.3
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEE
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGV 54 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i 54 (251)
.+|+|||||||++||.+. =+|.--..|..++.+.+++...- .|+ +.+
T Consensus 41 GvD~viveN~~d~P~~~~--~~p~tva~m~~i~~~v~~~~~~p--~Gv-nvL 87 (257)
T TIGR00259 41 GVDAVMFENFFDAPFLKE--VDPETVAAMAVIAGQLKSDVSIP--LGI-NVL 87 (257)
T ss_pred CCCEEEEecCCCCCCcCC--CCHHHHHHHHHHHHHHHHhcCCC--eee-eee
Confidence 589999999999999763 23555568999999999988632 455 444
No 234
>KOG1606|consensus
Probab=95.71 E-value=0.016 Score=50.23 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhcCCCCEE--EecCC-ChHhHHHhhc--CCEEEEeceEeecCe
Q psy9039 201 ADVSQLMSVKNAVDLPIL--IGSGV-TSDNVEHYMT--ADALIIGSHFKQGGR 248 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~--vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g~ 248 (251)
...+++++.++.-.+||+ +.||+ ||.+++-+++ |||+.|||.+-+.|+
T Consensus 194 aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~d 246 (296)
T KOG1606|consen 194 APYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD 246 (296)
T ss_pred CcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCC
Confidence 345778888888788884 78999 8999988887 999999999988775
No 235
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=95.70 E-value=0.015 Score=49.87 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=49.8
Q ss_pred HHHHHHHhh-hccccEEEe----cCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC-hHhHHHhhc--CCEEEEeceEeec
Q psy9039 175 ITETAKAAS-FFLSDGLII----TGNATGDPADVSQLMSVKNAVDLPILIGSGVT-SDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 175 i~~~a~~a~-~~~~D~v~V----TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~-~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
..+..+... ++-.+.++. -|++. .++.+.+..+.+.+.-||++||||. .|+..-... ++|++|||++.++
T Consensus 139 ~le~Vk~l~~~~~~~lIvLDi~aVGt~~--G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 139 FLETVKDLNYRRDPGLIVLDIGAVGTKS--GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred HHHHHHHHhccCCCCeEEEEcccccccc--CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence 334444443 344555543 34433 3468899999999999999999996 677777775 9999999998654
No 236
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.57 E-value=0.066 Score=52.26 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.5
Q ss_pred CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 214 DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
++||++-||| +..++.+.+. ||.|.+||.|-
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G~~~a 385 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLGRYFA 385 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeChhhh
Confidence 3899999999 5788777775 99999999874
No 237
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=95.54 E-value=0.025 Score=56.44 Aligned_cols=49 Identities=16% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CC--EEEEeceEee-cC
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---AD--ALIIGSHFKQ-GG 247 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---AD--GvIVGS~~~~-~g 247 (251)
+|..-+++.++.. ..+.|++++|||+++|+++++. .. |+=|-|.+.. .|
T Consensus 144 tG~~fdw~~~~~~--~~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG 198 (610)
T PRK13803 144 SGKSFDWEKFYNY--NFKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPG 198 (610)
T ss_pred CCCccChHHhhhc--ccCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCC
Confidence 3444467776543 2357999999999999999885 56 9989888873 35
No 238
>KOG2335|consensus
Probab=95.50 E-value=0.12 Score=47.92 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=56.0
Q ss_pred cHHHHHHHhhhccccEEEecCCCCC------CCCCHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc---CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATG------DPADVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g------~~~~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~ 242 (251)
...+.++-.+..|++-+.|=|.... .+.+.+.++.+|+... +||++.|+| +.+.+...++ ||||.+|-.
T Consensus 156 kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arg 235 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARG 235 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence 3444555555679999999885332 2346789999999986 999999999 6888877774 999999987
Q ss_pred Eeec
Q psy9039 243 FKQG 246 (251)
Q Consensus 243 ~~~~ 246 (251)
+..+
T Consensus 236 lL~N 239 (358)
T KOG2335|consen 236 LLYN 239 (358)
T ss_pred hhcC
Confidence 7655
No 239
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.47 E-value=0.046 Score=49.67 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=45.2
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHH-HHHHHh-cCCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQ-LMSVKN-AVDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~-l~~vr~-~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+.+..|..+|+|.+.+--.. +.++.. +..+|+ ..++|+.+.||||.+|+.++.. +|++.+||.+.
T Consensus 207 eea~eA~~~GaD~I~LDn~~---~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 207 EQVQEALEYGADIIMLDNMP---VDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred HHHHHHHHcCCCEEEECCCC---HHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 34455556799999886211 112222 333333 3478999999999999999996 99999999764
No 240
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.42 E-value=0.077 Score=49.87 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=49.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCC-----CCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT-----GDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~-----g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
...+.++.+...|+|.+++.|... ....++..+.++++..++||++ +++ |.+.+.++++ ||++++|.
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 456677777778999999987521 1123566777777778999998 556 8899988886 99999773
No 241
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.23 Score=43.59 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=41.1
Q ss_pred HHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhh
Q psy9039 180 KAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYM 232 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~ 232 (251)
+.....|+..+..+|.+.......+.++++-+.. .+-|++|+||+++|++++.
T Consensus 135 e~li~~Gv~RILTsGg~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N~~~l~ 189 (241)
T COG3142 135 EQLIELGVERILTSGGKASALEGLDLLKRLIEQAKGRIIIMAGAGVRAENIAELV 189 (241)
T ss_pred HHHHHCCCcEEecCCCcCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHH
Confidence 4444579999999998865555667777766554 5788999999999999885
No 242
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.19 E-value=0.07 Score=46.48 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.7
Q ss_pred ccccEEEe---cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh---hc-CCEEEEeceEeec
Q psy9039 185 FLSDGLII---TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY---MT-ADALIIGSHFKQG 246 (251)
Q Consensus 185 ~~~D~v~V---TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~---~~-ADGvIVGS~~~~~ 246 (251)
+|+|-+.+ .|.. +.+.+.+.++++.+. +|+-+|||| |.++++++ +. ||=+++||...++
T Consensus 48 ~g~~~l~ivDLd~~~-~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~ 114 (221)
T TIGR00734 48 IGARFIYIADLDRIV-GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI 114 (221)
T ss_pred cCCCEEEEEEccccc-CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC
Confidence 35555433 4433 555567888888876 599999999 68888888 55 9999999987665
No 243
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=95.14 E-value=0.011 Score=53.33 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCC--CCEEEecCC-ChHhHHHhhc--CCEEEEeceEeecC
Q psy9039 203 VSQLMSVKNAVD--LPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 203 ~~~l~~vr~~~~--~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~~g 247 (251)
++.+.++++.++ +||+..||| |.+++.+++. ||.|.|+|++...|
T Consensus 231 L~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~G 280 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRG 280 (295)
T ss_dssp HHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHG
T ss_pred HHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcC
Confidence 456778888887 999999999 7999999985 99999999996544
No 244
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=95.07 E-value=0.21 Score=45.23 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=52.7
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH---HHHHHHHhCCCCccEEEEEe
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR---LCAEIRKVLPPSVPVGVQIL 100 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~---~i~~vr~~~~~~~P~Gvn~~ 100 (251)
|-.|+++.-.=.+.+++.++.+++.|+ |.|-|-=+-.-|.+.++ + ...-+.| +++++++..+ +|+-+.+|
T Consensus 26 DSFsdgg~~~~~~~a~~~a~~~~~~GA-dIIDIGgeSTrPg~~~v--~--~eeE~~Rv~pvI~~l~~~~~--~~ISIDT~ 98 (282)
T PRK11613 26 DSFSDGGTHNSLIDAVKHANLMINAGA-TIIDVGGESTRPGAAEV--S--VEEELDRVIPVVEAIAQRFE--VWISVDTS 98 (282)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC-cEEEECCCCCCCCCCCC--C--HHHHHHHHHHHHHHHHhcCC--CeEEEECC
Confidence 334454322223445566667788999 99987322233555442 2 2223444 6688887666 79999998
Q ss_pred eCChHHHHHHHHHcCccceec
Q psy9039 101 SGCNKAALATAQAAGLDFIRA 121 (251)
Q Consensus 101 ~N~~~~~~~ia~a~g~~Fir~ 121 (251)
... + +..|...|++.+-+
T Consensus 99 ~~~-v--a~~AL~~GadiIND 116 (282)
T PRK11613 99 KPE-V--IRESAKAGAHIIND 116 (282)
T ss_pred CHH-H--HHHHHHcCCCEEEE
Confidence 643 3 44455568888764
No 245
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.06 E-value=0.11 Score=48.87 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred cHHHHHHHhhhccccEEEecCCCC----CCCC-CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNAT----GDPA-DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~----g~~~-~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
...+.++.+...|+|.+++.|... +... +...+.++++..++||++ ++| |++.+.++++ ||++.||
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 345666666667999999977421 1222 465666666667999988 446 8999998886 9999998
No 246
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.01 E-value=0.058 Score=48.55 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=44.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
+.++ +..|...|+|++.+--.. +.+. +.++.+++. .++|+++-||||++|+.++.+ +|++++|+-
T Consensus 192 t~ee-a~~A~~~gaD~I~ld~~~---p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai 260 (272)
T cd01573 192 SLEE-ALAAAEAGADILQLDKFS---PEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAAAGADILVTSAP 260 (272)
T ss_pred CHHH-HHHHHHcCCCEEEECCCC---HHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHHcCCcEEEEChh
Confidence 4444 444555799998775321 2233 334445554 379999999999999999997 999955553
No 247
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.91 E-value=0.054 Score=52.51 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHHhhhccccEEEecCC---------CCCC-CCCHHHHH----HHHhcCCCCEEEecCC-ChHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLIITGN---------ATGD-PADVSQLM----SVKNAVDLPILIGSGV-TSDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~---------~~g~-~~~~~~l~----~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGv 237 (251)
..+.++.+...|+|++-|.+. -++. .+...-+. ..++. ++||++-||| ++.++.+.+. ||.|
T Consensus 276 t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 276 SAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred CHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 344556665679999864331 2221 12222222 22333 7999999999 7999888886 9999
Q ss_pred EEeceE
Q psy9039 238 IIGSHF 243 (251)
Q Consensus 238 IVGS~~ 243 (251)
.+||.|
T Consensus 355 m~g~~~ 360 (475)
T TIGR01303 355 MVGSWF 360 (475)
T ss_pred eechhh
Confidence 999998
No 248
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=94.89 E-value=0.7 Score=42.21 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=83.9
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCcc---ccC------CCchHHHHHHHHHHHHHHHhCCCCccEEEEE------
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYV---LEA------ESGPEITANMTRLCAEIRKVLPPSVPVGVQI------ 99 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~---~p~------~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~------ 99 (251)
++.++++++.+.+.|+ -+|++ ||+|=. |.. .+|. ..+.++.+|+.+++. ++++
T Consensus 60 ~d~l~~~~~~~~~lGi-~av~L---Fgvp~~~~Kd~~gs~A~~~~gi-----vqravr~ik~~~p~l---~iitDvcLce 127 (330)
T COG0113 60 LDRLVEEAEELVDLGI-PAVIL---FGVPDDSKKDETGSEAYDPDGI-----VQRAVRAIKEAFPEL---VVITDVCLCE 127 (330)
T ss_pred HHHHHHHHHHHHhcCC-CEEEE---eCCCcccccCcccccccCCCCh-----HHHHHHHHHHhCCCe---EEEeeecccC
Confidence 3444666677888999 99986 888832 110 0222 235677888877632 3322
Q ss_pred ---------------eeCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh
Q psy9039 100 ---------------LSGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD 159 (251)
Q Consensus 100 ---------------~~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~ 159 (251)
..|+. ....++.+| .|++++. +++.+.+....+.+.-+..|-.++.+++.
T Consensus 128 yT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeAGAdivA----------PSdMMDGrV~aIR~aLd~ag~~~v~IMsY 197 (330)
T COG0113 128 YTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEAGADIVA----------PSDMMDGRVGAIREALDEAGFIDVPIMSY 197 (330)
T ss_pred CcCCCccccccCCCeecchHHHHHHHHHHHHHHHcCCCeec----------ccccccchHHHHHHHHHHcCCCcceeeeh
Confidence 22331 112333333 5566654 44555555444444444445455555442
Q ss_pred hHhhc------------cCCC-------CCCcccHHHHHHHhh---hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCE
Q psy9039 160 IKKKH------------SSHA-------ITADVDITETAKAAS---FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPI 217 (251)
Q Consensus 160 v~~k~------------~~~~-------~~~~~~i~~~a~~a~---~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV 217 (251)
-++-+ |.|. ..+.....+..+.++ .-|+|.+.|- .+ -+=++.++++|+.+++|+
T Consensus 198 saKyASafYGPFRdAa~Sap~~gdrktYQmDpaN~~EAlrE~~lD~~EGAD~lMVK---Pa-l~YLDIi~~vk~~~~lP~ 273 (330)
T COG0113 198 SAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREIELDIEEGADILMVK---PA-LPYLDIIRRVKEEFNLPV 273 (330)
T ss_pred hHHHhhhccccHHHHhhcccccCCcceeccCCcCHHHHHHHHHhhHhcCCcEEEEc---CC-chHHHHHHHHHHhcCCCe
Confidence 11110 1111 112223334444444 2499999883 11 122578999999999998
Q ss_pred EE
Q psy9039 218 LI 219 (251)
Q Consensus 218 ~v 219 (251)
++
T Consensus 274 ~A 275 (330)
T COG0113 274 AA 275 (330)
T ss_pred EE
Confidence 75
No 249
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=94.83 E-value=0.023 Score=50.39 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+++++. .||+-||++-.+
T Consensus 199 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 199 KVRILYGGSVNPENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred ceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhC
Confidence 48999999999999999985 899999998654
No 250
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.79 E-value=0.065 Score=47.82 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=83.2
Q ss_pred CcCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EEEEE----eeCChHHHHHHHHHc
Q psy9039 45 SVPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VGVQI----LSGCNKAALATAQAA 114 (251)
Q Consensus 45 l~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~----~~N~~~~~~~ia~a~ 114 (251)
++++|+ |+|.+- +.+|.| | -++++..-|..-++.+++..+ .| +.+.+ |.|++.....-+
T Consensus 28 ~e~aG~-d~i~vGds~~~~~lG~p--D---t~~vtl~em~~~~~~V~r~~~--~p~viaD~~fg~y~~~~~~av~~a--- 96 (254)
T cd06557 28 ADEAGV-DVILVGDSLGMVVLGYD--S---TLPVTLDEMIYHTRAVRRGAP--RALVVADMPFGSYQTSPEQALRNA--- 96 (254)
T ss_pred HHHcCC-CEEEECHHHHHHHcCCC--C---CCCcCHHHHHHHHHHHHhcCC--CCeEEEeCCCCcccCCHHHHHHHH---
Confidence 467799 999753 123332 3 368888889999999998888 68 44433 444321111111
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--HhhccCCC------CCCcccHHHHHHHhh-h-
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKHSSHA------ITADVDITETAKAAS-F- 184 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~~~~~------~~~~~~i~~~a~~a~-~- 184 (251)
.++++ ..|.+|+-..|..+..+.-+.+-...+.+++.+ ++++...+ .-++.+.+++.+.+. +
T Consensus 97 -~r~~~-------~aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~ 168 (254)
T cd06557 97 -ARLMK-------EAGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALE 168 (254)
T ss_pred -HHHHH-------HhCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHH
Confidence 12222 134555555554333333333323355554322 33321110 001233455555554 2
Q ss_pred -ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 185 -FLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 185 -~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
.|||++.+-+.. .++.+++.+.+++|+| +|.|-
T Consensus 169 ~AGA~~i~lE~v~------~~~~~~i~~~v~iP~igiGaG~ 203 (254)
T cd06557 169 EAGAFALVLECVP------AELAKEITEALSIPTIGIGAGP 203 (254)
T ss_pred HCCCCEEEEcCCC------HHHHHHHHHhCCCCEEEeccCC
Confidence 599999997662 2578888889999988 44444
No 251
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.75 E-value=0.015 Score=54.13 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=42.3
Q ss_pred HHHHHHhhhccccEEEe---------cCCCCCC-CCCHHH---HHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLII---------TGNATGD-PADVSQ---LMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~V---------TG~~~g~-~~~~~~---l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.....|+|++-| |-..+|. -+.+.. ..++++...+|||+-||| ++-++.+.+. ||.|.+
T Consensus 160 ~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMl 239 (352)
T PF00478_consen 160 YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVML 239 (352)
T ss_dssp HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceee
Confidence 44455544568999855 1112221 123333 444555558999999999 6888887775 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||.|-
T Consensus 240 G~llA 244 (352)
T PF00478_consen 240 GSLLA 244 (352)
T ss_dssp STTTT
T ss_pred chhhc
Confidence 99763
No 252
>PRK14565 triosephosphate isomerase; Provisional
Probab=94.74 E-value=0.031 Score=49.34 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=33.5
Q ss_pred HHHHHhcC-CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 206 LMSVKNAV-DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 206 l~~vr~~~-~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
.+.+|+.. ++||+.||+|+++|+.++++ .||+.||++-.+
T Consensus 180 ~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~ 223 (237)
T PRK14565 180 FEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLD 223 (237)
T ss_pred HHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhc
Confidence 44566654 68999999999999999985 999999998654
No 253
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.72 E-value=0.089 Score=51.04 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=49.4
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.++.....|+|.+++--++ |.+.. .+.++++|+.. ++||++|++.|.+.+.++.+ ||++-||
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~-g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAH-GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCC-CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEEC
Confidence 33333334689999987776 55544 47799999875 89999999999999999996 9999876
No 254
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=94.72 E-value=0.92 Score=40.44 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=55.0
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+.+.|+ |.|-|-=+-.-|..+++ +..+-..-+..+++.+++.++ +|+.+..+... .+..|...|
T Consensus 24 ~~~~~~a~~~~~~GA-diIDIG~~st~p~~~~i-~~~~E~~rl~~~v~~i~~~~~--~plSIDT~~~~---v~e~al~~G 96 (257)
T cd00739 24 DKAVAHAEKMIAEGA-DIIDIGGESTRPGADPV-SVEEELERVIPVLEALRGELD--VLISVDTFRAE---VARAALEAG 96 (257)
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCcCCCCCCCC-CHHHHHHHHHHHHHHHHhcCC--CcEEEeCCCHH---HHHHHHHhC
Confidence 344444555678899 99976111113555543 122222233346788887777 79999998643 344444557
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
++.+-. ..|. .-+ .+..+..+++++
T Consensus 97 ~~iINd---------isg~-~~~-~~~~~l~~~~~~ 121 (257)
T cd00739 97 ADIIND---------VSGG-SDD-PAMLEVAAEYGA 121 (257)
T ss_pred CCEEEe---------CCCC-CCC-hHHHHHHHHcCC
Confidence 676653 1121 112 456677777776
No 255
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.70 E-value=0.092 Score=47.35 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
..+.+..|...|+|.+-... .+.+.++++.+. .++.+.+.||||++|++++.. +|.+.+||.+.
T Consensus 191 tleea~~A~~~GaDiI~LDn------~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDN------MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CHHHHHHHHHcCCCEEEECC------CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 34445666667999887543 244555543332 245699999999999999997 99999999764
No 256
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=94.58 E-value=0.039 Score=51.54 Aligned_cols=68 Identities=31% Similarity=0.448 Sum_probs=47.9
Q ss_pred HHHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 177 ETAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+-++.+...|+|++.|+|.. . ...+..+.|.++++.+ ++||++-||| +..++.+.+. ||+|-+|-.|.
T Consensus 237 ~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 237 EDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence 33455556799999999752 1 1234467788888865 6999999999 7888888876 99999997654
No 257
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.54 E-value=0.045 Score=50.62 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHHHhhhccccEE---------EecCCCCCCCC-CHHHHHHHH---hcCCCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGL---------IITGNATGDPA-DVSQLMSVK---NAVDLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v---------~VTG~~~g~~~-~~~~l~~vr---~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.....|||++ |+|-..+|... .+..+.++. ...++|||+-||| ++-++.+.+. ||.|.+
T Consensus 162 ~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 162 GEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVML 241 (346)
T ss_pred HHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEe
Confidence 444555555688887 56666665433 344444433 3357999999999 5788777775 999999
Q ss_pred eceEe
Q psy9039 240 GSHFK 244 (251)
Q Consensus 240 GS~~~ 244 (251)
||-|-
T Consensus 242 GsllA 246 (346)
T PRK05096 242 GGMLA 246 (346)
T ss_pred Chhhc
Confidence 99873
No 258
>PLN02979 glycolate oxidase
Probab=94.53 E-value=0.68 Score=43.44 Aligned_cols=169 Identities=11% Similarity=0.193 Sum_probs=88.7
Q ss_pred ecCCCCccccCCCchHHHHHHHH------HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCC
Q psy9039 58 NMHDVPYVLEAESGPEITANMTR------LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMAD 131 (251)
Q Consensus 58 N~~~~Pf~~p~~~gp~i~aa~~~------~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~ 131 (251)
+.+|.+|+-|+-..|.-.+.+.. +++.- +... +|+.+..+.+.+.+.++-+ .-+-.|.+. ....+
T Consensus 62 ~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA-~~ag--i~~~lSt~ss~slEeIa~a-~~~~~wfQL-----Y~~~D 132 (366)
T PLN02979 62 TVLGFKISMPIMVAPTAMQKMAHPDGEYATARAA-SAAG--TIMTLSSWATSSVEEVAST-GPGIRFFQL-----YVYKN 132 (366)
T ss_pred EECCcccCccceecHHHHHhhCCCChHHHHHHHH-HHcC--CCeeeccCcCCCHHHHHhc-cCCCeEEEE-----eecCC
Confidence 35789999998778877665531 22222 2345 6999988877666555432 122345553 11112
Q ss_pred CceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHH--hhhccccEEEec---CCC
Q psy9039 132 EGLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKA--ASFFLSDGLIIT---GNA 196 (251)
Q Consensus 132 ~Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~--a~~~~~D~v~VT---G~~ 196 (251)
.++ ..++++..++.|..-+-+=-| +......|. ..+....... ........-.+. +..
T Consensus 133 r~~----~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (366)
T PLN02979 133 RNV----VEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP---NLTLKNFEGLDLGKMDEANDSGLASYVAGQ 205 (366)
T ss_pred HHH----HHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCc---ccchhhhhhccccCCCcccchhHHHHHhhc
Confidence 221 455677777777633322111 111111110 0011111000 000000000000 001
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.....+++.|+.+|+.+++||++.+=.+++++..+.+ +||++|+..
T Consensus 206 ~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 206 IDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCC
Confidence 1123357999999999999999987779999998886 999999754
No 259
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=94.52 E-value=0.15 Score=40.01 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=50.7
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-C-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-V-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
....+.+++.+.+....+|.+++++......+.. +.++++|+. . ++++++||...++...++.+ .|++|=+
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 4456778888888878999999999865444444 556778876 3 57788888776666776664 7777643
No 260
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.47 E-value=0.095 Score=50.41 Aligned_cols=60 Identities=23% Similarity=0.360 Sum_probs=47.8
Q ss_pred HHhhhccccEEEecCCCCCCCCC-HHHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 180 KAASFFLSDGLIITGNATGDPAD-VSQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
+.....|+|.+.|+-++ |.... .+.++++|+. .++||++|...|++++..+.. ||++.||
T Consensus 230 ~~L~~aG~d~I~vd~a~-g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 230 EALVKAGVDVIVIDSSH-GHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEECCC-CcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 33334699999998876 33333 4779999988 489999999999999999996 9999887
No 261
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.47 E-value=0.1 Score=50.62 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=47.5
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....++|.+.+...+ +.... .+.++.+|+.. ++||++|+++|.+++..+.+ ||++.||
T Consensus 233 a~~L~~agvdvivvD~a~-g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 233 AEALVEAGVDVLVVDTAH-GHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHhCCCEEEEECCC-CcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 344345789988887664 33333 47788999887 89999999999999999996 9999886
No 262
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.46 E-value=0.23 Score=44.32 Aligned_cols=92 Identities=23% Similarity=0.174 Sum_probs=64.4
Q ss_pred cchhhhhhHhhccC-CCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHH
Q psy9039 153 NVLVFTDIKKKHSS-HAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 153 ~i~i~a~v~~k~~~-~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~ 230 (251)
.+.+++++....-. .+......+.++|+.....|++++-|--...-...+.+.++.+|+.+++||+.=-=| .+.++.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~ 128 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYE 128 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHH
Confidence 46677766554211 111234466777777777899999775554445566899999999999999964434 5788888
Q ss_pred hhc--CCEEEEeceEe
Q psy9039 231 YMT--ADALIIGSHFK 244 (251)
Q Consensus 231 ~~~--ADGvIVGS~~~ 244 (251)
... ||++.+.-++.
T Consensus 129 a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 129 ARAAGADAILLIVAAL 144 (260)
T ss_pred HHHcCCCEEEEEeccC
Confidence 875 99999886664
No 263
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.43 E-value=0.24 Score=44.03 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=55.1
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
....++|+.-+.+|++++-|-=...-...+.+.++++|+.+++||+.=-+| ++.|+.+... ||++..=.++.
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 455666666556789998664444445667899999999999999999999 8999988875 99997654443
No 264
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=94.24 E-value=0.21 Score=43.63 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred ccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCc
Q psy9039 93 VPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITAD 172 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~ 172 (251)
+|+|.|...+- ......|...|++-+..-.-.+. --.|-+..-..|+...++..+.-.+|++- + .+. .++
T Consensus 66 FP~G~~~~~~K-~~e~~~Ai~~GA~EiD~Vin~~~--~~~g~~~~v~~ei~~v~~~~~~~~lKvIl----E--t~~-L~~ 135 (221)
T PRK00507 66 FPLGANTTAVK-AFEAKDAIANGADEIDMVINIGA--LKSGDWDAVEADIRAVVEAAGGAVLKVII----E--TCL-LTD 135 (221)
T ss_pred ccCCCChHHHH-HHHHHHHHHcCCceEeeeccHHH--hcCCCHHHHHHHHHHHHHhcCCceEEEEe----e--cCc-CCH
Confidence 46776655543 34445555566666553100110 01111211134444455543322444431 0 111 223
Q ss_pred ccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhcCCEEEEece
Q psy9039 173 VDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMTADALIIGSH 242 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~ADGvIVGS~ 242 (251)
+.+.++.+.+...|+|.+-+ ||...+ ..+.+.++.+++.. .++|.+.||| |.+++.+++.|-.--+||+
T Consensus 136 e~i~~a~~~~~~agadfIKTsTG~~~~-gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 136 EEKVKACEIAKEAGADFVKTSTGFSTG-GATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCC-CCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 33444444455679995543 444322 34567777777765 5999999999 7899999997333344543
No 265
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.20 E-value=0.94 Score=42.60 Aligned_cols=169 Identities=13% Similarity=0.201 Sum_probs=89.0
Q ss_pred cCCCCccccCCCchHHHHHHHH-----HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCc
Q psy9039 59 MHDVPYVLEAESGPEITANMTR-----LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEG 133 (251)
Q Consensus 59 ~~~~Pf~~p~~~gp~i~aa~~~-----~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~G 133 (251)
.+|.+|+-|+-..|.-.+.+.. .+.+--+... +|+.+..+.+.+++..+-+ .-+..|.+. ....+.+
T Consensus 64 ~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~g--i~~~lSt~ss~slEeva~~-~~~~~wfQl-----Y~~~Dr~ 135 (367)
T PLN02493 64 VLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG--TIMTLSSWATSSVEEVAST-GPGIRFFQL-----YVYKNRN 135 (367)
T ss_pred ECCccccccceechHHHHhhcCCchHHHHHHHHHHcC--CCeeecCcccCCHHHHHhc-CCCCcEEEE-----eecCCHH
Confidence 4788999988777877666531 2222223345 7999998888766665432 122345553 1111222
Q ss_pred eeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHH--hh--hccccEEE-ecCCCCC
Q psy9039 134 LMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKA--AS--FFLSDGLI-ITGNATG 198 (251)
Q Consensus 134 li~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~--a~--~~~~D~v~-VTG~~~g 198 (251)
...++++..++.|..-+-+=-| +......|. ..+....... .. +...+.+. ..+....
T Consensus 136 ----~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (367)
T PLN02493 136 ----VVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP---NLTLKNFEGLDLGKMDEANDSGLASYVAGQID 208 (367)
T ss_pred ----HHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCc---ccchhhhhhccccCCCcccchhHHHHHhhcCC
Confidence 1456777777777632222111 111111110 0011110000 00 00000000 0001111
Q ss_pred CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 199 DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 199 ~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
...+++.|+.+|+.+++||++-+=.+++.+..+.+ +||++|+..
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCC
Confidence 23467999999999999999987779999998886 999999754
No 266
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.14 E-value=0.059 Score=47.95 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.2
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+.||+|+++|+.+++. +||+.|||+-.+
T Consensus 202 ~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslk 236 (251)
T COG0149 202 KVRILYGGSVKPGNAAELAAQPDIDGALVGGASLK 236 (251)
T ss_pred CeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeec
Confidence 79999999999999999984 999999998665
No 267
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.11 E-value=0.11 Score=48.16 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=47.8
Q ss_pred HHHHHHhhhccccEEEec---C------CCCCCC-CCHHHHHHHHhcC---CCCEEEecCC-ChHhHHHhhc--CCEEEE
Q psy9039 176 TETAKAASFFLSDGLIIT---G------NATGDP-ADVSQLMSVKNAV---DLPILIGSGV-TSDNVEHYMT--ADALII 239 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VT---G------~~~g~~-~~~~~l~~vr~~~---~~PV~vG~GI-~~~~v~~~~~--ADGvIV 239 (251)
.+.++.+...|+|++.|. | ..+|.. +.++.+.++.+.. ++||++=||| +..++.+.+. ||.|.+
T Consensus 161 ~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 161 GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVML 240 (343)
T ss_pred HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEE
Confidence 444566666799998664 1 223333 4556666666543 6899999999 6788887775 999999
Q ss_pred eceE
Q psy9039 240 GSHF 243 (251)
Q Consensus 240 GS~~ 243 (251)
|+.|
T Consensus 241 G~ll 244 (343)
T TIGR01305 241 GGMF 244 (343)
T ss_pred CHhh
Confidence 9865
No 268
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.10 E-value=1.2 Score=41.86 Aligned_cols=163 Identities=10% Similarity=0.125 Sum_probs=85.8
Q ss_pred cCCCCccccCCCchHHHHHHH-----HHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccccccccc-CCC
Q psy9039 59 MHDVPYVLEAESGPEITANMT-----RLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHM-ADE 132 (251)
Q Consensus 59 ~~~~Pf~~p~~~gp~i~aa~~-----~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~-~~~ 132 (251)
.+|.+|+-|+-..|.-...+. ..+.+--.... +|+.+..+.+.+++..+-+..-+-.|.+. |+ .+.
T Consensus 74 llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g--~~~~lSt~ss~slEev~~~~~~~~~wfQl------Y~~~dr 145 (367)
T TIGR02708 74 FLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFG--SIYTTSSYSTADLPEISEALNGTPHWFQF------YMSKDD 145 (367)
T ss_pred eCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcC--CCeeecccccCCHHHHHhhcCCCceEEEE------eccCCH
Confidence 478899999877787766553 12222223345 79999998887666554320012345553 22 121
Q ss_pred ceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHHhhhccccE-E-EecCCCCCCC
Q psy9039 133 GLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKAASFFLSDG-L-IITGNATGDP 200 (251)
Q Consensus 133 Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~-v-~VTG~~~g~~ 200 (251)
.+ ..++++..++.|..-+-+=-| +......|. ..+... .... .+... . -+.+. ....
T Consensus 146 ~~----~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~--~~~~-~~~~~~~~~~~~~-~~~~ 214 (367)
T TIGR02708 146 GI----NRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPV---GMPIVQ--EYLP-TGAGKSMDNVYKS-AKQK 214 (367)
T ss_pred HH----HHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCC---ccchhh--hhcc-cCCccchhhhccc-cCCC
Confidence 11 345677777777633322111 111111110 000000 0000 00000 0 00111 1123
Q ss_pred CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
.+++.|+.+|+.+++||++- || +++.+..+.+ +|+++|+.
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 35788999999999999998 78 7888888886 99999874
No 269
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.07 E-value=0.11 Score=44.96 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=46.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CH-HHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DV-SQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~-~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
++++++....+|+|++.|.|+ +|... .+ +.++++|+.+++||++ | |.+...+.. ||++.+=|-+-
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~~~lPvil-f---p~~~~~i~~~aD~~~~~slln 80 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKITNLPVIL-F---PGNVNGLSRYADAVFFMSLLN 80 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhhcCCCEEE-E---CCCccccCcCCCEEEEEEeec
Confidence 333444555579999999888 45443 23 5688999999999998 5 555555556 99999887653
No 270
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.06 E-value=1.5 Score=41.54 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
.+++.|+++|+.++.||++.+=++.+.+..+.+ +||++|.
T Consensus 240 ~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 240 LTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 357899999999999999984448999888886 9999997
No 271
>KOG0538|consensus
Probab=93.90 E-value=0.14 Score=46.86 Aligned_cols=67 Identities=25% Similarity=0.393 Sum_probs=51.7
Q ss_pred HHHHhhhccccEEEecCCC--C--CCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 178 TAKAASFFLSDGLIITGNA--T--GDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~--~--g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
-|+.|..+|+++++||... . +.+.+.+.|.++.+++ .+||++-||+ +..++-+++. |-||.||--++
T Consensus 236 DA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 236 DARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred HHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 3566667899999998642 2 1244578888888877 6999999999 6777887776 99999997654
No 272
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.90 E-value=0.35 Score=38.72 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=41.4
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI 223 (251)
..+.+.+++++.|....+|.+++|.--+...... +.++.+|+.- ++||++||++
T Consensus 34 G~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 34 GVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 4557889999999888999999998665444444 4566777663 7999999996
No 273
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=93.86 E-value=0.12 Score=44.64 Aligned_cols=32 Identities=16% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+.||+|+++|+.+++. .||+-||++-.+
T Consensus 169 ~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~ 203 (205)
T TIGR00419 169 SVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLK 203 (205)
T ss_pred CceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 58999999999999999884 999999998653
No 274
>PTZ00333 triosephosphate isomerase; Provisional
Probab=93.73 E-value=0.073 Score=47.54 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=28.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+.||++-.+
T Consensus 207 ~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 207 ATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred cceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh
Confidence 58999999999999999974 999999987654
No 275
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.72 E-value=0.55 Score=43.49 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=85.7
Q ss_pred CCCcCCCCccEEEEeecCC---CCccc-cCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-ChHHHHHHHHHcCcc
Q psy9039 43 PPSVPVGVQHGVIVENMHD---VPYVL-EAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-CNKAALATAQAAGLD 117 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~---~Pf~~-p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~~~~~~~ia~a~g~~ 117 (251)
+.|.++|+ |.||+-.-.| .-|.- +....+ ...++++++..+. ..+.+++... .....+..|...|.+
T Consensus 31 ~~Ld~aGV-~~IEvg~g~gl~g~s~~~G~~~~~~------~e~i~~~~~~~~~-~~~~~ll~pg~~~~~dl~~a~~~gvd 102 (333)
T TIGR03217 31 AALDEAGV-DAIEVTHGDGLGGSSFNYGFSAHTD------LEYIEAAADVVKR-AKVAVLLLPGIGTVHDLKAAYDAGAR 102 (333)
T ss_pred HHHHHcCC-CEEEEecCCCCCCccccCCCCCCCh------HHHHHHHHHhCCC-CEEEEEeccCccCHHHHHHHHHCCCC
Confidence 66889999 9999841111 11211 000111 1234445444332 3566555321 125567888888999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+|+.. .+++. ....+..++.++.|.+ +... +... +. .+++.+.+.++.+..+|+|.+.+.=+.-
T Consensus 103 ~iri~~----~~~e~----d~~~~~i~~ak~~G~~-v~~~--l~~s---~~-~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 103 TVRVAT----HCTEA----DVSEQHIGMARELGMD-TVGF--LMMS---HM-TPPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred EEEEEe----ccchH----HHHHHHHHHHHHcCCe-EEEE--EEcc---cC-CCHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 999742 22221 1256777888888862 2221 1111 11 3445566666666668999998875532
Q ss_pred CCCC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 198 GDPA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 198 g~~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
...| +. +++..+|+..+..+-+|+=.
T Consensus 168 ~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 168 AMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 2222 33 56778888765234456654
No 276
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.59 E-value=0.32 Score=43.62 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=81.5
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCc-hHHHHHHHHHHHHHHHhCCCCccEEE-----EEeeCChHHHHHHHHHcCccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESG-PEITANMTRLCAEIRKVLPPSVPVGV-----QILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~g-p~i~aa~~~~i~~vr~~~~~~~P~Gv-----n~~~N~~~~~~~ia~a~g~~F 118 (251)
+.++|+ |+|.+-.-++++-.-. .++ +++..-|..-++.+++..+ .|+.+ +.|-+ +...+.-| .++
T Consensus 31 ~~~aG~-d~ilvGdSlgm~~lG~-~~t~~vtldem~~h~~aV~rg~~--~~~vv~DmPf~sy~~-~e~a~~na----~rl 101 (263)
T TIGR00222 31 FADAGV-DVILVGDSLGMVVLGH-DSTLPVTVADMIYHTAAVKRGAP--NCLIVTDLPFMSYAT-PEQALKNA----ARV 101 (263)
T ss_pred HHHcCC-CEEEECccHhHHhcCC-CCCCCcCHHHHHHHHHHHHhhCC--CceEEeCCCcCCCCC-HHHHHHHH----HHH
Confidence 578999 9999865555533221 122 5888889999999998844 23333 14432 22222222 133
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--Hhhc----c-CCC-CCCcccHHHHHHHhh---hccc
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKH----S-SHA-ITADVDITETAKAAS---FFLS 187 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~----~-~~~-~~~~~~i~~~a~~a~---~~~~ 187 (251)
++. .|.+++=..+..+....-+.+....|.+++-+ .|+. + .-. ..++.+..++.+.|. ..||
T Consensus 102 ~~e-------aGa~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA 174 (263)
T TIGR00222 102 MQE-------TGANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGA 174 (263)
T ss_pred HHH-------hCCeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCC
Confidence 331 22333333333333332233333345555211 1111 0 000 011233445555554 3699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
+++.+-|.. .+..+++.+..++|++ +|.|-
T Consensus 175 ~~ivlE~vp------~~~a~~It~~l~iP~iGIGaG~ 205 (263)
T TIGR00222 175 QLLVLECVP------VELAAKITEALAIPVIGIGAGN 205 (263)
T ss_pred CEEEEcCCc------HHHHHHHHHhCCCCEEeeccCC
Confidence 999997653 3667788889999986 44444
No 277
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=93.58 E-value=0.075 Score=47.32 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.9
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 203 ~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~ 237 (250)
T PRK00042 203 KVRILYGGSVKPDNAAELMAQPDIDGALVGGASLK 237 (250)
T ss_pred CceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeec
Confidence 48999999999999999884 999999998765
No 278
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.19 Score=48.95 Aligned_cols=61 Identities=26% Similarity=0.380 Sum_probs=47.4
Q ss_pred HHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+.++-.+ |... .++.++++|+.. ++||++|...|.++++.+.+ ||++.||
T Consensus 246 ~~~l~~ag~d~i~id~a~-G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 246 AAALIEAGVDVLVVDSSQ-GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHCCCCEEEEecCC-CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 344345699999988764 3333 357899999886 79999987779999999996 9999875
No 279
>PRK14567 triosephosphate isomerase; Provisional
Probab=93.56 E-value=0.083 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=28.8
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 202 ~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL~ 236 (253)
T PRK14567 202 NIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLK 236 (253)
T ss_pred cceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhhc
Confidence 58999999999999999985 999999988654
No 280
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.55 E-value=0.25 Score=42.18 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=57.6
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC---CCCEEEecCC-ChHh
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV---DLPILIGSGV-TSDN 227 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~ 227 (251)
++++.....+|... ...+.+.+++.+.+....+|.+++|...+...+.. +.++++|+.. ++||++||.. +.+
T Consensus 100 ~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~~- 178 (201)
T cd02070 100 NLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQE- 178 (201)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCHH-
Confidence 55555555555443 23557788888888778999999998765544444 5677888774 6899999988 654
Q ss_pred HHHhhcCCEEE
Q psy9039 228 VEHYMTADALI 238 (251)
Q Consensus 228 v~~~~~ADGvI 238 (251)
..+.+.||+..
T Consensus 179 ~~~~~GaD~~~ 189 (201)
T cd02070 179 FADEIGADGYA 189 (201)
T ss_pred HHHHcCCcEEE
Confidence 55555588763
No 281
>PLN02561 triosephosphate isomerase
Probab=93.46 E-value=0.091 Score=46.87 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceE
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~ 243 (251)
++||+-||+|+++|+.+++. .||+-||++=
T Consensus 204 ~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~AS 236 (253)
T PLN02561 204 TTRIIYGGSVTGANCKELAAQPDVDGFLVGGAS 236 (253)
T ss_pred cceEEEeCCcCHHHHHHHhcCCCCCeEEEehHh
Confidence 58999999999999999974 9999999863
No 282
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.44 E-value=2.1 Score=38.19 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=56.0
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchH-HHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPE-ITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~-i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+.+++.++.+.+.|+ |.|-|--+..-|..++. .+. =..-+..+++.+++.++ +|+.+..+.. ..+..|...
T Consensus 23 ~~~~~~a~~~~~~GA-~iIDIG~~st~p~~~~i--~~~~E~~rl~~~v~~~~~~~~--~plsiDT~~~---~vi~~al~~ 94 (257)
T TIGR01496 23 DKAVAHAERMLEEGA-DIIDVGGESTRPGADRV--SPEEELNRVVPVIKALRDQPD--VPISVDTYRA---EVARAALEA 94 (257)
T ss_pred HHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHHHhcCC--CeEEEeCCCH---HHHHHHHHc
Confidence 344555566678899 99987212223444432 222 22335567788887777 7999998753 344555556
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
|++.+-.- .|. . ..+..+..+++++
T Consensus 95 G~~iINsi---------s~~-~--~~~~~~l~~~~~~ 119 (257)
T TIGR01496 95 GADIINDV---------SGG-Q--DPAMLEVAAEYGV 119 (257)
T ss_pred CCCEEEEC---------CCC-C--CchhHHHHHHcCC
Confidence 88877641 111 1 2456677777776
No 283
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.40 E-value=0.33 Score=37.55 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=52.1
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~ 229 (251)
++++.....+|... .....+.+++.+.+....+|.+++|...+...... +.++++|+.. +++|++||-.-.+.-.
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~ 96 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFK 96 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHH
Confidence 44454444444332 12445667777777777899999999865544443 5677888774 5888888887322222
Q ss_pred Hhh--cCCEEE
Q psy9039 230 HYM--TADALI 238 (251)
Q Consensus 230 ~~~--~ADGvI 238 (251)
.+. .+|+++
T Consensus 97 ~~~~~G~D~~~ 107 (119)
T cd02067 97 FLKEIGVDAYF 107 (119)
T ss_pred HHHHcCCeEEE
Confidence 222 288775
No 284
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.37 E-value=0.22 Score=46.22 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.7
Q ss_pred ccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 185 FLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++|++++==++ |.... .+.++++|+..+-+.+++|-| |++.++++.. ||++.||
T Consensus 120 ~~~d~iviD~Ah-Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVAN-GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 369999885554 44433 588999999887677778878 9999999996 9999988
No 285
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.29 E-value=0.065 Score=47.27 Aligned_cols=40 Identities=33% Similarity=0.520 Sum_probs=32.4
Q ss_pred CcceEEEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCC
Q psy9039 3 QKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPP 44 (251)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~ 44 (251)
.+|++|+||+++.||.+. + +|.--..|..|..+.++++..
T Consensus 47 G~DavivEN~gD~Pf~k~-v-~~~tvaaMa~iv~~v~r~v~i 86 (263)
T COG0434 47 GVDAVIVENYGDAPFLKD-V-GPETVAAMAVIVREVVREVSI 86 (263)
T ss_pred CCcEEEEeccCCCCCCCC-C-ChHHHHHHHHHHHHHHHhccc
Confidence 589999999999999873 2 244446899999999998873
No 286
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.18 E-value=0.63 Score=41.11 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=93.5
Q ss_pred cCCCCccEEEEeecC---CCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee---CChHHH--HHHHHHcCcc
Q psy9039 46 VPVGVQHGVIVENMH---DVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---GCNKAA--LATAQAAGLD 117 (251)
Q Consensus 46 ~~~Gv~D~i~ieN~~---~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---N~~~~~--~~ia~a~g~~ 117 (251)
++.|+ |+|.+.-.. ...|.| .+..+..-|...++.+.+.++ +|+.+..=. |..... ..-....|+.
T Consensus 26 e~~G~-~ai~~s~~~~~~s~G~pD---~~~~~~~e~~~~~~~I~~~~~--~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 26 ERAGF-KAIYTSGAGVAASLGLPD---GGLLTLDEVLAAVRRIARAVD--LPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHcCC-CEEEeccHHHHHhcCCCC---CCcCCHHHHHHHHHHHHhhcc--CCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 55699 999875222 123444 356777778888888888877 798775432 321010 1111113333
Q ss_pred ceecc--cc---cccccCCCceeecC--cchhHHHHHhcCC-CcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--cc
Q psy9039 118 FIRAE--SF---VFGHMADEGLMNAQ--AGPLLRYRKQIGA-DNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--FL 186 (251)
Q Consensus 118 Fir~~--~~---~~~~~~~~Gli~~d--a~e~~~~r~~l~~-~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~~ 186 (251)
-+... .+ +| ..+...++..+ ...+...++.... .++.+++...... .....+++..+.+. + .|
T Consensus 100 gv~iED~~~~k~~g-~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~-----~~~~~~~eai~Ra~ay~~AG 173 (243)
T cd00377 100 GIHIEDQVGPKKCG-HHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL-----AGEEGLDEAIERAKAYAEAG 173 (243)
T ss_pred EEEEecCCCCcccc-CCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh-----ccCCCHHHHHHHHHHHHHcC
Confidence 33321 00 11 01111222221 2222222232222 2566655322110 11134566666655 2 69
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEec---C--CChHhHHHhhcCCEEEEeceE
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPILIGS---G--VTSDNVEHYMTADALIIGSHF 243 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~---G--I~~~~v~~~~~ADGvIVGS~~ 243 (251)
+|++.+.|.. +.+.++++.+..+.|+++-- + ++.+++.++- ..-++.|+.+
T Consensus 174 AD~v~v~~~~-----~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG-~~~v~~~~~~ 229 (243)
T cd00377 174 ADGIFVEGLK-----DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG-VRRVSYGLAL 229 (243)
T ss_pred CCEEEeCCCC-----CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC-CeEEEEChHH
Confidence 9999998876 56888898888999998863 3 3444444431 6777776643
No 287
>PLN02535 glycolate oxidase
Probab=93.18 E-value=2.2 Score=40.14 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=87.5
Q ss_pred ecCCCCccccCCCchHHHHHHHH-----HHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceeccccccccc-CC
Q psy9039 58 NMHDVPYVLEAESGPEITANMTR-----LCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHM-AD 131 (251)
Q Consensus 58 N~~~~Pf~~p~~~gp~i~aa~~~-----~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~-~~ 131 (251)
+.+|.+|+-|+-..|.-...+.. .+.+--+... +|+.+..+.+.+++..+-+ .-+..|.+. |+ .+
T Consensus 65 ~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g--~~~~lSt~s~~slEeva~~-~~~~~wfQl------Y~~~d 135 (364)
T PLN02535 65 TILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN--TIMVLSFMASCTVEEVASS-CNAVRFLQL------YVYKR 135 (364)
T ss_pred EECCccccccceechHHHhcccCcchHHHHHHHHHHcC--CCeEecCcccCCHHHHHhc-CCCCeEEEE------eccCC
Confidence 35799999998778877666532 2222233445 7999999888766654321 122345553 22 22
Q ss_pred CceeecCcchhHHHHHhcCCCcchhhhh----------hHhhccCCCCCCcccHHHHHHHhhhccccEEEecC------C
Q psy9039 132 EGLMNAQAGPLLRYRKQIGADNVLVFTD----------IKKKHSSHAITADVDITETAKAASFFLSDGLIITG------N 195 (251)
Q Consensus 132 ~Gli~~da~e~~~~r~~l~~~~i~i~a~----------v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG------~ 195 (251)
.++ ..++++..++.|..-+-+=-| +......| ........... ....-.-.+ .
T Consensus 136 r~~----~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 204 (364)
T PLN02535 136 RDI----AAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISP------QLKNFEGLLST-EVVSDKGSGLEAFASE 204 (364)
T ss_pred HHH----HHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCc------chhhHhhhhcc-CCCccccccHHHHHHh
Confidence 221 445677777777633332111 11111111 00000000000 000000000 0
Q ss_pred CCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 196 ATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.-....+++.++.+|+.+++||++.+=++++++..+.+ +|+++|.-
T Consensus 205 ~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 205 TFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred ccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeC
Confidence 01123467999999999999998876558999888886 99999863
No 288
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.90 E-value=0.14 Score=43.21 Aligned_cols=129 Identities=17% Similarity=0.293 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhCCCCccEEEEE-----eeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCC
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQI-----LSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGAD 152 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~-----~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~ 152 (251)
+..+++++++.-. .+-|++ +.++ ..++ +|+.. ....+|+|... ..+.++.+++|.-
T Consensus 33 l~~~v~~~~~~gK---~vfVHiDli~Gl~~D---~~~i------~~L~~------~~~~dGIISTk-~~~i~~Ak~~gl~ 93 (175)
T PF04309_consen 33 LKDIVKRLKAAGK---KVFVHIDLIEGLSRD---EAGI------EYLKE------YGKPDGIISTK-SNLIKRAKKLGLL 93 (175)
T ss_dssp HHHHHHHHHHTT----EEEEECCGEETB-SS---HHHH------HHHHH------TT--SEEEESS-HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHcCC---EEEEEehhcCCCCCC---HHHH------HHHHH------cCCCcEEEeCC-HHHHHHHHHcCCE
Confidence 5667788876532 333332 2222 2333 56553 34478988777 5567778888873
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHh
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHY 231 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~ 231 (251)
.|+=+ +..+...++...+..+...+|++-+- .| .-...++++++.++.|+++||=| +.+++.++
T Consensus 94 tIqRi----------FliDS~al~~~~~~i~~~~PD~vEil---Pg--~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~a 158 (175)
T PF04309_consen 94 TIQRI----------FLIDSSALETGIKQIEQSKPDAVEIL---PG--VMPKVIKKIREETNIPIIAGGLIRTKEDVEEA 158 (175)
T ss_dssp EEEEE----------E-SSHHHHHHHHHHHHHHT-SEEEEE---SC--CHHHHHCCCCCCCSS-EEEESS--SHHHHHHH
T ss_pred EEEEe----------eeecHHHHHHHHHHHhhcCCCEEEEc---hH--HHHHHHHHHHHhcCCCEEeecccCCHHHHHHH
Confidence 33211 01233444444445455689998663 22 12366888888899999988888 78999999
Q ss_pred hc--CCEEEEe
Q psy9039 232 MT--ADALIIG 240 (251)
Q Consensus 232 ~~--ADGvIVG 240 (251)
++ |+++-.+
T Consensus 159 l~aGa~aVSTS 169 (175)
T PF04309_consen 159 LKAGADAVSTS 169 (175)
T ss_dssp CCTTCEEEEE-
T ss_pred HHcCCEEEEcC
Confidence 96 8887654
No 289
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.87 E-value=0.25 Score=43.71 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=83.8
Q ss_pred CcCCCCccEEEEeecCC---CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee---CChHHHHHHHHHcCccc
Q psy9039 45 SVPVGVQHGVIVENMHD---VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---GCNKAALATAQAAGLDF 118 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~---~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---N~~~~~~~ia~a~g~~F 118 (251)
++++|+ |+|.+.-... ..|.| .+.++..-|...++++++.++. .|+.+.+=. +.+...+..+ .+|
T Consensus 28 ~e~aG~-dai~v~~s~~a~~~G~pD---~~~vtl~em~~~~~~I~r~~~~-~pviaD~~~G~g~~~~~~~~~~----~~l 98 (240)
T cd06556 28 FADAGL-NVMLVGDSQGMTVAGYDD---TLPYPVNDVPYHVRAVRRGAPL-ALIVADLPFGAYGAPTAAFELA----KTF 98 (240)
T ss_pred HHHcCC-CEEEEChHHHHHhcCCCC---CCCcCHHHHHHHHHHHHhhCCC-CCEEEeCCCCCCcCHHHHHHHH----HHH
Confidence 456799 9998762211 22333 2567878888888999887753 377776532 2211111111 244
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--HhhccCC------CCCCcccHHHHHHHhh-h--ccc
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKHSSH------AITADVDITETAKAAS-F--FLS 187 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~~~~------~~~~~~~i~~~a~~a~-~--~~~ 187 (251)
++ .|.+|+-..|..+..+.-+.+-...+.+++.+ .+++-.. ...+...+++..+.+. + .|+
T Consensus 99 ~~--------aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGA 170 (240)
T cd06556 99 MR--------AGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGA 170 (240)
T ss_pred HH--------cCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCC
Confidence 44 44666666665444433333322345555532 2221000 0001234555555554 3 699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
|++.+.+. +.+.++++.+..++|++.
T Consensus 171 d~i~~e~~------~~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 171 DLIVMECV------PVELAKQITEALAIPLAG 196 (240)
T ss_pred CEEEEcCC------CHHHHHHHHHhCCCCEEE
Confidence 99999753 467788888889999864
No 290
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=92.86 E-value=2 Score=39.50 Aligned_cols=159 Identities=15% Similarity=0.211 Sum_probs=81.0
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHH---HHHHHHHHHHHHHhCCCCccEEEEEe-------------
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEI---TANMTRLCAEIRKVLPPSVPVGVQIL------------- 100 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i---~aa~~~~i~~vr~~~~~~~P~Gvn~~------------- 100 (251)
.++++++.+.+.|+ .+|++ ||+|=.+. ..|-.. ---+.+.++.+|+.+++. +|.+=
T Consensus 62 ~l~~~~~~~~~~Gi-~~v~l---Fgv~~~Kd-~~gs~A~~~~g~v~~air~iK~~~pdl---~vi~DVcLc~YT~hGHcG 133 (322)
T PRK13384 62 ALADEIERLYALGI-RYVMP---FGISHHKD-AKGSDTWDDNGLLARMVRTIKAAVPEM---MVIPDICFCEYTDHGHCG 133 (322)
T ss_pred HHHHHHHHHHHcCC-CEEEE---eCCCCCCC-CCcccccCCCChHHHHHHHHHHHCCCe---EEEeeeecccCCCCCcee
Confidence 34555577888999 99986 77764322 111000 001246788899888753 22211
Q ss_pred -------eCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh------
Q psy9039 101 -------SGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK------ 162 (251)
Q Consensus 101 -------~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~------ 162 (251)
-|+. ....++.+| .|++++. +.+.+.+....+.+.-+..|-.++.+++.-.+
T Consensus 134 il~~g~i~ND~Tl~~L~~~Als~A~AGADiVA----------PSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fY 203 (322)
T PRK13384 134 VLHNDEVDNDATVENLVKQSVTAAKAGADMLA----------PSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFY 203 (322)
T ss_pred eccCCcCccHHHHHHHHHHHHHHHHcCCCeEe----------cccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhc
Confidence 1211 112333333 5566654 33444444333444444444445555442211
Q ss_pred --------------hccCCCCCCcccHHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 163 --------------KHSSHAITADVDITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 163 --------------k~~~~~~~~~~~i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
+.+.. .+.....+..+++.. -|+|.+.|- .+ -+-++.++++|+.+++||++
T Consensus 204 GPFRdAa~Sap~gDrksYQ--mdp~n~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~lPvaa 271 (322)
T PRK13384 204 GPFRAAVDCELSGDRKSYQ--LDYANGRQALLEALLDEAEGADILMVK---PG-TPYLDVLSRLRQETHLPLAA 271 (322)
T ss_pred chHHHHhcCCCCCCccccc--CCCCCHHHHHHHHHhhHhhCCCEEEEc---CC-chHHHHHHHHHhccCCCEEE
Confidence 11111 122223333444442 499999883 22 12368899999999999985
No 291
>KOG4202|consensus
Probab=92.85 E-value=0.94 Score=38.49 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=73.3
Q ss_pred ccEEEEEeeCChHHH-HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCC
Q psy9039 93 VPVGVQILSGCNKAA-LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITA 171 (251)
Q Consensus 93 ~P~Gvn~~~N~~~~~-~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~ 171 (251)
.|..|-+|.|++.+. +.++...+.+.++.. ..|-.....+++.+-+++| |++.
T Consensus 92 ~~~lVGVF~nqp~e~il~~~~~~~ldiVQLH----------------G~es~~~~~~L~rpvikvf---------pln~- 145 (227)
T KOG4202|consen 92 AKKLVGVFVNQPEETILRAADSSDLDIVQLH----------------GNESRAAFSRLVRPVIKVF---------PLNA- 145 (227)
T ss_pred chheEEEeecCCHHHHHHHHhhcCCceEEec----------------CcccHHHHHHhCCceEEEE---------ecCc-
Confidence 466788889986443 556555666777753 1234444555777777765 2210
Q ss_pred cccHHHHHHHhhh-ccccEEEecCCCCC---CCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 172 DVDITETAKAASF-FLSDGLIITGNATG---DPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 172 ~~~i~~~a~~a~~-~~~D~v~VTG~~~g---~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
-+..+.... ---|-..| ++++| ..-+++.+.-..-....|-+++||+||+|+.+++. -||+=|.|.+.
T Consensus 146 ----n~~~~~~~~vP~~d~~lv-dsetGG~G~~~dW~~~s~~~vr~~~~~~LAGGltP~NV~dAlsi~~p~gvDVSsGve 220 (227)
T KOG4202|consen 146 ----NEDGKLLNEVPEEDWILV-DSETGGSGKGFDWAQFSLPSVRSRNGWLLAGGLTPTNVSDALSILQPDGVDVSSGVE 220 (227)
T ss_pred ----hhhhHhhccCCchhheee-ccccCcCcCccCHHHhcCccccccCceEEecCCCccchHHhhhhcCCceeeccCcee
Confidence 111121111 12232222 22233 23345444322122347899999999999999985 99999999998
Q ss_pred ecCee
Q psy9039 245 QGGRT 249 (251)
Q Consensus 245 ~~g~~ 249 (251)
-||+-
T Consensus 221 TdGiq 225 (227)
T KOG4202|consen 221 TDGIQ 225 (227)
T ss_pred cCCcc
Confidence 88863
No 292
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=92.82 E-value=2.1 Score=39.37 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.7
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
-|+|.+.|- .+ -+-++.|+++|+.+++||++
T Consensus 240 EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~Pvaa 270 (323)
T PRK09283 240 EGADMVMVK---PA-LPYLDIIRRVKDEFNLPVAA 270 (323)
T ss_pred hCCCEEEEc---CC-chHHHHHHHHHhcCCCCEEE
Confidence 599999883 22 12368899999999999985
No 293
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=92.78 E-value=2.1 Score=39.19 Aligned_cols=160 Identities=18% Similarity=0.278 Sum_probs=82.1
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHH---HHHHHHHHHHHHHhCCCCccEEEEE-------------
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEI---TANMTRLCAEIRKVLPPSVPVGVQI------------- 99 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i---~aa~~~~i~~vr~~~~~~~P~Gvn~------------- 99 (251)
+.++++++.+.+.|+ -+|++ ||+|-.+. ..|-.. ---+.+.++.+|+.+++. +|++
T Consensus 51 d~l~~~~~~~~~~Gi-~~v~L---Fgv~~~Kd-~~gs~A~~~~g~v~~air~iK~~~p~l---~vi~DvcLc~YT~hGHc 122 (314)
T cd00384 51 DSLVEEAEELADLGI-RAVIL---FGIPEHKD-EIGSEAYDPDGIVQRAIRAIKEAVPEL---VVITDVCLCEYTDHGHC 122 (314)
T ss_pred HHHHHHHHHHHHCCC-CEEEE---ECCCCCCC-CCcccccCCCChHHHHHHHHHHhCCCc---EEEEeeeccCCCCCCcc
Confidence 334555567788999 99986 78874322 111000 001346778888888753 2222
Q ss_pred -------eeCCh----HHHHHHHHH-cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHh-----
Q psy9039 100 -------LSGCN----KAALATAQA-AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKK----- 162 (251)
Q Consensus 100 -------~~N~~----~~~~~ia~a-~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~----- 162 (251)
.-|+. ....++.++ .|++++. +++.+.+.-..+.+.-+..|-.++.+++.-.+
T Consensus 123 Gil~~~~idND~Tl~~L~k~Als~A~AGADiVA----------PSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSaf 192 (314)
T cd00384 123 GILKDDYVDNDATLELLAKIAVSHAEAGADIVA----------PSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAF 192 (314)
T ss_pred eeccCCcCccHHHHHHHHHHHHHHHHcCCCeee----------cccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhc
Confidence 11221 122344433 5566654 44444444444444444444445555442111
Q ss_pred ----------------hccCCCCCCcccHHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 163 ----------------KHSSHAITADVDITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 163 ----------------k~~~~~~~~~~~i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
|.+.. .+.....+..+.+.. -|+|.+.|- .+ -+-++.|+++|+.+++|+.+
T Consensus 193 YGPFRdAa~Sap~~gDRktYQ--mdpan~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~Pvaa 262 (314)
T cd00384 193 YGPFRDAADSAPSFGDRKTYQ--MDPANRREALREVELDIEEGADILMVK---PA-LAYLDIIRDVRERFDLPVAA 262 (314)
T ss_pred cchHHHHhhcCCCCCCccccC--CCCCCHHHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhcCCCEEE
Confidence 11111 122223333444442 499999883 22 12368899999999999875
No 294
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.77 E-value=0.91 Score=42.10 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCCcCCCCccEEEEeec---CCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC-ChHHHHHHHHHcCcc
Q psy9039 43 PPSVPVGVQHGVIVENM---HDVPYV-LEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG-CNKAALATAQAAGLD 117 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~---~~~Pf~-~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N-~~~~~~~ia~a~g~~ 117 (251)
+.|.+.|+ |.||+-.- .+.-|. .+.... -...++.+++..+. ..+..++... .....+..|...|.+
T Consensus 32 ~~L~~aGv-~~IEvg~~~g~g~~s~~~g~~~~~------~~e~i~~~~~~~~~-~~~~~ll~pg~~~~~dl~~a~~~gvd 103 (337)
T PRK08195 32 RALDAAGV-PVIEVTHGDGLGGSSFNYGFGAHT------DEEYIEAAAEVVKQ-AKIAALLLPGIGTVDDLKMAYDAGVR 103 (337)
T ss_pred HHHHHcCC-CEEEeecCCCCCCccccCCCCCCC------HHHHHHHHHHhCCC-CEEEEEeccCcccHHHHHHHHHcCCC
Confidence 66889999 99998421 111121 110111 12244555444443 3666655321 125567777888999
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
.+|+.. .++.. ....+..++.++.|. .+... +. .+ +. .+++.+.+.++.+..+|+|.+.+.=+.-
T Consensus 104 ~iri~~----~~~e~----~~~~~~i~~ak~~G~-~v~~~--l~--~a-~~-~~~e~l~~~a~~~~~~Ga~~i~i~DT~G 168 (337)
T PRK08195 104 VVRVAT----HCTEA----DVSEQHIGLARELGM-DTVGF--LM--MS-HM-APPEKLAEQAKLMESYGAQCVYVVDSAG 168 (337)
T ss_pred EEEEEE----ecchH----HHHHHHHHHHHHCCC-eEEEE--EE--ec-cC-CCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 999742 22221 125667778888876 23221 11 11 11 2345566666666668999988865532
Q ss_pred CCCC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 198 GDPA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 198 g~~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
...| +. +.++.+|+..+-.+-+|+=.
T Consensus 169 ~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 196 (337)
T PRK08195 169 ALLPEDVRDRVRALRAALKPDTQVGFHG 196 (337)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 2222 33 56778888763234456544
No 295
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.68 E-value=0.3 Score=45.07 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=43.6
Q ss_pred cccEEEecCCCCCCCC-CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 186 LSDGLIITGNATGDPA-DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.+|++++-=++ |... -.+.++++|+.++.|.++.+.| |.+.+..+.+ ||++.||
T Consensus 108 ~~d~i~~D~ah-g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 108 TPEYITIDIAH-GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCCEEEEeCcc-CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 38998886554 4433 3578999999999998888889 8899999986 9999998
No 296
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.21 E-value=0.4 Score=44.23 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=44.6
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....++|.+.++-++ |.... .+.++++|+.. ++||++|.-.|.+++.++.+ ||+++||
T Consensus 99 ~~~l~eagv~~I~vd~~~-G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 99 AEALVEAGVDVIVIDSAH-GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHhcCCCEEEEECCC-CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 333334689999886543 22232 47788999876 48999877779999999886 9999984
No 297
>PLN02429 triosephosphate isomerase
Probab=92.20 E-value=0.22 Score=45.78 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=29.1
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
+++|+.||+|+++|+.+++. .||+-||++-.+
T Consensus 263 ~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~ 297 (315)
T PLN02429 263 KTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLK 297 (315)
T ss_pred CceEEEcCccCHHHHHHHhcCCCCCEEEeecceec
Confidence 58999999999999999984 999999998765
No 298
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.10 E-value=0.47 Score=45.16 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=45.9
Q ss_pred HHHhhhccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+++--++ +.... .+.++++|+.. +++|++|.-.|.+++..+.+ ||++.||
T Consensus 158 v~~lv~aGvDvI~iD~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 158 VEELVKAHVDILVIDSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHhcCCCEEEEECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 344445699999864444 33333 47799999886 78888877779999999986 9999988
No 299
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.89 E-value=1.1 Score=40.29 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=55.5
Q ss_pred cchhHHHHHhcCCCcchhhhhh--HhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCC
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDI--KKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLP 216 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v--~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~P 216 (251)
..++...++++|.+.+....-. ..+.+.+ .....+...++.+..-|+|.+ ++..+.+.+..+++.+.+.+|
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~--~d~~~v~~aaRlaaelGADIi-----K~~ytg~~e~F~~vv~~~~vp 204 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYH--RDADLVGYAARLAAELGADII-----KTKYTGDPESFRRVVAACGVP 204 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCccccccc--ccHHHHHHHHHHHHHhcCCeE-----eecCCCChHHHHHHHHhCCCC
Confidence 4556666777776444432211 1111101 111222233333444689986 445555567888988889999
Q ss_pred EEEecCCCh---HhH----HHhhc--CCEEEEeceE
Q psy9039 217 ILIGSGVTS---DNV----EHYMT--ADALIIGSHF 243 (251)
Q Consensus 217 V~vG~GI~~---~~v----~~~~~--ADGvIVGS~~ 243 (251)
|++.||=+. +.+ .+++. |-|+++|--+
T Consensus 205 VviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 205 VVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 999999842 223 33443 8899988544
No 300
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=91.79 E-value=0.2 Score=44.91 Aligned_cols=180 Identities=20% Similarity=0.259 Sum_probs=78.6
Q ss_pred CcCCCCccEEEEeecCC------------CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHH
Q psy9039 45 SVPVGVQHGVIVENMHD------------VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~------------~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~ 112 (251)
.+++|+ |-|++=|-+- +||.+ .=.++..| .+++-...+++ |+..-+...+|...+.
T Consensus 31 ae~gGa-DlI~~ynsGrfR~~G~~Slagllpygn----aN~iv~em---~~eiLp~v~~t-PViaGv~atDP~~~~~--- 98 (268)
T PF09370_consen 31 AEKGGA-DLILIYNSGRFRMAGRGSLAGLLPYGN----ANEIVMEM---AREILPVVKDT-PVIAGVCATDPFRDMD--- 98 (268)
T ss_dssp HHHTT--SEEEE-HHHHHHHTT--GGGGGBTEEE----HHHHHHHH---HHHHGGG-SSS--EEEEE-TT-TT--HH---
T ss_pred HHhcCC-CEEEEecchhHhhCCCcchhhhhcccC----HhHHHHHH---HHhhhhhccCC-CEEEEecCcCCCCcHH---
Confidence 468999 9999876441 46654 22232222 26666665554 8777776777532221
Q ss_pred HcCccceec---cccccc-ccCCCceeecCcchhHHHHHhcCC---CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhc
Q psy9039 113 AAGLDFIRA---ESFVFG-HMADEGLMNAQAGPLLRYRKQIGA---DNVLVFTDIKKKHSSHAITADVDITETAKAASFF 185 (251)
Q Consensus 113 a~g~~Fir~---~~~~~~-~~~~~Gli~~da~e~~~~r~~l~~---~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~ 185 (251)
.|++. ..|.|. ...--|+|.+. +....++.|. .+|.++.. +.+.+.- +++-...++.|+.....
T Consensus 99 ----~fl~~lk~~Gf~GV~NfPTvgliDG~---fR~~LEe~Gmgy~~EVemi~~-A~~~gl~-T~~yvf~~e~A~~M~~A 169 (268)
T PF09370_consen 99 ----RFLDELKELGFSGVQNFPTVGLIDGQ---FRQNLEETGMGYDREVEMIRK-AHEKGLF-TTAYVFNEEQARAMAEA 169 (268)
T ss_dssp ----HHHHHHHHHT-SEEEE-S-GGG--HH---HHHHHHHTT--HHHHHHHHHH-HHHTT-E-E--EE-SHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCceEEECCcceeeccH---HHHHHHhcCCCHHHHHHHHHH-HHHCCCe-eeeeecCHHHHHHHHHc
Confidence 12221 111221 12222555433 2222223332 23333321 2222221 12223334455554457
Q ss_pred cccEEEe-----cCCCCCCCC--CH----HHHHHHHhc---C--C-CCEEEecCC-ChHhHHHhhc----CCEEEEeceE
Q psy9039 186 LSDGLII-----TGNATGDPA--DV----SQLMSVKNA---V--D-LPILIGSGV-TSDNVEHYMT----ADALIIGSHF 243 (251)
Q Consensus 186 ~~D~v~V-----TG~~~g~~~--~~----~~l~~vr~~---~--~-~PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~ 243 (251)
|+|.+|+ ||...|... ++ ++++++.++ . + +-++-||-| +|+++..+++ ++|++-||+|
T Consensus 170 GaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 170 GADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp T-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred CCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 9999976 443333321 22 334444332 1 2 456667778 7999999884 6899999987
Q ss_pred ee
Q psy9039 244 KQ 245 (251)
Q Consensus 244 ~~ 245 (251)
.+
T Consensus 250 ER 251 (268)
T PF09370_consen 250 ER 251 (268)
T ss_dssp TH
T ss_pred hh
Confidence 53
No 301
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.77 E-value=0.87 Score=36.75 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI 223 (251)
..+.+.+++++.+....+|.+++|.--+.....+ +.++++|+.- +.++++||++
T Consensus 36 G~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 36 GVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 4567889999999888999999998654333333 4566777663 5777788874
No 302
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.77 E-value=0.61 Score=42.33 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=42.4
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc-----CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA-----VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~-----~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.+.++.+...|+|.+-.- .-+.+.++++.+. .+..+-+.||||++|++++.. +|.+++|+-
T Consensus 199 leqa~ea~~agaDiI~LD------n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLD------KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred HHHHHHHHHcCCCEEEEC------CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECcc
Confidence 344566666799998872 2223333332222 357899999999999999997 999987763
No 303
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.70 E-value=1 Score=40.22 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCch-HHHHHHHHHHHHHHHhC-CCCccEEEEEeeCC-hHHHHHHHHHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGP-EITANMTRLCAEIRKVL-PPSVPVGVQILSGC-NKAALATAQAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp-~i~aa~~~~i~~vr~~~-~~~~P~Gvn~~~N~-~~~~~~ia~a~g~~Fi 119 (251)
+.|.+.|+ |.|++ |+|-+.+. ... .....-...++++++.. +. .++..++-.+- ....+..+...|.+++
T Consensus 27 ~~L~~~GV-d~IEv----G~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 27 RALAAAGI-DYVEI----GYRSSPEK-EFKGKSAFCDDEFLRRLLGDSKGN-TKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHCCC-CEEEe----ecCCCCcc-ccCCCccCCCHHHHHHHHhhhccC-CEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 56889999 99975 77765431 110 00000012333343332 12 47777764431 1345666666777888
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGD 199 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~ 199 (251)
|... ... -.....+..++.++.|. .+.+ ......- .+.+.+.+.++.+..+|+|.+.+.=+- |.
T Consensus 100 ri~~----~~~----~~~~~~~~i~~ak~~G~-~v~~----~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~-G~ 163 (266)
T cd07944 100 RVAF----HKH----EFDEALPLIKAIKEKGY-EVFF----NLMAISG--YSDEELLELLELVNEIKPDVFYIVDSF-GS 163 (266)
T ss_pred EEec----ccc----cHHHHHHHHHHHHHCCC-eEEE----EEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCC-CC
Confidence 8641 110 12235556667777765 2222 1111111 234556666666665789998775432 22
Q ss_pred -CC-CH-HHHHHHHhcCCCCEEEecCC
Q psy9039 200 -PA-DV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 200 -~~-~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
.| .. ++++.+|+..+..+-+|+=.
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 22 23 56778887765113445544
No 304
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.57 E-value=0.53 Score=42.29 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=81.0
Q ss_pred CcCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCcc-EEEEE----e-eCChHHHHHHHHH
Q psy9039 45 SVPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVP-VGVQI----L-SGCNKAALATAQA 113 (251)
Q Consensus 45 l~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~----~-~N~~~~~~~ia~a 113 (251)
++++|+ |+|.+- +.+|.| | -++++..-|..-++.+++.++ .| +.+.+ | .++ ...+.-+
T Consensus 31 ~e~aG~-d~i~vGds~~~~~lG~~--D---t~~vtl~em~~h~~~V~r~~~--~p~vvaD~pfg~y~~~~-~~av~~a-- 99 (264)
T PRK00311 31 FDEAGV-DVILVGDSLGMVVLGYD--S---TLPVTLDDMIYHTKAVARGAP--RALVVADMPFGSYQASP-EQALRNA-- 99 (264)
T ss_pred HHHcCC-CEEEECHHHHHHHcCCC--C---CCCcCHHHHHHHHHHHHhcCC--CCcEEEeCCCCCccCCH-HHHHHHH--
Confidence 467799 999864 233433 3 368888889999999988877 55 44433 2 111 1101100
Q ss_pred cCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh--hHhhccCCC------CCCcccHHHHHHHhh--
Q psy9039 114 AGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD--IKKKHSSHA------ITADVDITETAKAAS-- 183 (251)
Q Consensus 114 ~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~--v~~k~~~~~------~~~~~~i~~~a~~a~-- 183 (251)
.++++. .|.+|+-..|..+..+.-+.+-...|.+++- +++++-... ..++.+..++.+.+.
T Consensus 100 --~r~~~~-------aGa~aVkiEdg~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~ 170 (264)
T PRK00311 100 --GRLMKE-------AGAHAVKLEGGEEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKAL 170 (264)
T ss_pred --HHHHHH-------hCCeEEEEcCcHHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHH
Confidence 123221 3345555555433333222222235555431 133321000 012233455556664
Q ss_pred -hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 184 -FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 184 -~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
..|||++.+.+.. .+..+++.+.+++|+| +|.|-
T Consensus 171 ~eAGA~~i~lE~v~------~~~~~~i~~~l~iP~igiGaG~ 206 (264)
T PRK00311 171 EEAGAFALVLECVP------AELAKEITEALSIPTIGIGAGP 206 (264)
T ss_pred HHCCCCEEEEcCCC------HHHHHHHHHhCCCCEEEeccCC
Confidence 2699999997652 2577888888999986 44444
No 305
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.44 E-value=1.4 Score=40.10 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE---EecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 175 ITETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL---IGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 175 i~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~---vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
+++..+.+. + .|||++.+.|.+ +.+.++++.+..+.|++ ..+|-+| -+++++.+ ..-++.|+..
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~~-----~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~ 237 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAMT-----ELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLSA 237 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCC-----CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHH
Confidence 556666665 3 599999998754 47788888888889983 3345333 23444443 7777777543
No 306
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=91.42 E-value=0.77 Score=41.89 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=91.5
Q ss_pred cCCCCccEEEEe------ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCChHHHHHH--HHHc
Q psy9039 46 VPVGVQHGVIVE------NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCNKAALAT--AQAA 114 (251)
Q Consensus 46 ~~~Gv~D~i~ie------N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~~~~~~i--a~a~ 114 (251)
++.|+ +++.+. ..+|+| | .|-.+..-|...++++.+.++ +|+-+.. |-|..-....+ -...
T Consensus 33 e~aGf-~ai~~sg~~~~as~lG~p--D---~g~l~~~e~~~~~~~I~~~~~--lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 33 QQAGF-PAVHMTGSGTSASMLGLP--D---LGFTSVSEQAINAKNIVLAVD--VPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred HHcCC-CEEEecHHHHHHHHcCCC--C---cCCCCHHHHHHHHHHHHhccC--CCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 56799 999763 335554 2 256677777888888888888 8988864 33331111111 1112
Q ss_pred Cccceeccccc-ccccC---CCceeecC--cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--c
Q psy9039 115 GLDFIRAESFV-FGHMA---DEGLMNAQ--AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--F 185 (251)
Q Consensus 115 g~~Fir~~~~~-~~~~~---~~Gli~~d--a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~ 185 (251)
|+.-+...-.+ ....| ...++..+ ...+...++.....++.|++..... ....+++..+.+. + .
T Consensus 105 Gaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~-------~~~g~deaI~Ra~aY~eA 177 (294)
T TIGR02319 105 GIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR-------ESFGLDEAIRRSREYVAA 177 (294)
T ss_pred CCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc-------ccCCHHHHHHHHHHHHHh
Confidence 32222221000 00011 00111111 1112222222222345555432211 1124566666665 3 5
Q ss_pred cccEEEecCCCCCCCCCHHHHHHHHhcCCCCE---EEecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 186 LSDGLIITGNATGDPADVSQLMSVKNAVDLPI---LIGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV---~vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
|+|++.+.|.. +.+.++++.+.++.|+ ++.+|-+| -++.++.+ ..-++.|+.+
T Consensus 178 GAD~ifi~~~~-----~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~ 236 (294)
T TIGR02319 178 GADCIFLEAML-----DVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSG 236 (294)
T ss_pred CCCEEEecCCC-----CHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHH
Confidence 99999998643 4677888888888887 44444443 45666654 8888887654
No 307
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=91.32 E-value=3.4 Score=37.92 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEE
Q psy9039 175 ITETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILI 219 (251)
Q Consensus 175 i~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~v 219 (251)
..+..+.+.. -|+|.+.|- .+ -+-++.|+++|+.+ ++||.+
T Consensus 224 ~~eAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~~Pvaa 268 (320)
T cd04824 224 RGLALRAVERDVSEGADMIMVK---PG-TPYLDIVREAKDKHPDLPLAV 268 (320)
T ss_pred HHHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhccCCCEEE
Confidence 3344455442 599999883 21 12368899999999 999885
No 308
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=91.26 E-value=0.67 Score=42.25 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCC
Q psy9039 24 GPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGC 103 (251)
Q Consensus 24 ~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~ 103 (251)
+|++..|++++.++-++.++.|.++|+ |+++||.++|. .-..+....++++.++.....|+-+..-..+
T Consensus 131 ~~~~~v~fd~l~~ay~eq~~~Li~gG~-D~iLiET~~D~----------l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~ 199 (311)
T COG0646 131 SPDFAVTFDELVEAYREQVEGLIDGGA-DLILIETIFDT----------LNAKAAVFAAREVFEELGVRLPVMISGTITD 199 (311)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCC-cEEEEehhccH----------HHHHHHHHHHHHHHHhcCCcccEEEEEEEec
Confidence 343456899999999999999999999 99999998854 2333344445555443332258888776654
No 309
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=91.18 E-value=0.27 Score=37.71 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHh-hcCCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHY-MTADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~-~~ADGvIVGS 241 (251)
.+++.+......+|.+++|...+.... ..+.++.+|+.. +.++++||.. | ++.+.+. ..+|.++.|-
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCC
Confidence 355555555568999999984333222 245666777765 6899999887 5 5655443 3389999884
No 310
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=91.17 E-value=0.087 Score=46.71 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=26.9
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEe
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFK 244 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~ 244 (251)
++||+-||+|+++|+.+++. .||+.||++=.
T Consensus 202 ~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl 235 (244)
T PF00121_consen 202 NIRILYGGSVNPENAAELLSQPDIDGVLVGGASL 235 (244)
T ss_dssp HSEEEEESSESTTTHHHHHTSTT-SEEEESGGGG
T ss_pred ceeEEECCcCCcccHHHHhcCCCCCEEEEchhhh
Confidence 69999999999999999984 99999998643
No 311
>PRK15492 triosephosphate isomerase; Provisional
Probab=91.12 E-value=0.28 Score=43.97 Aligned_cols=29 Identities=31% Similarity=0.689 Sum_probs=26.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||+|+++|+.+++. .||+.||.+
T Consensus 212 ~irILYGGSV~~~N~~~l~~~~diDG~LvG~a 243 (260)
T PRK15492 212 DIPVFYGGSVNAENANELFGQPHIDGLFIGRS 243 (260)
T ss_pred ceeEEEcCccCHHHHHHHhcCCCCCEEEeehh
Confidence 58999999999999999974 999999965
No 312
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.04 E-value=6.2 Score=33.63 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhc--CCCCEEEecCC-ChHhHHHhhc
Q psy9039 175 ITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNA--VDLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+...++.+...|+|.+=+ ||...+ ..+++.++.+++. ..+||.+.||| |.+++.+++.
T Consensus 133 i~~a~ria~e~GaD~IKTsTG~~~~-~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~ 194 (203)
T cd00959 133 IIKACEIAIEAGADFIKTSTGFGPG-GATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE 194 (203)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCCC-CCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH
Confidence 333344444579999866 666432 3445554444444 46999999999 6888888875
No 313
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=90.98 E-value=1.7 Score=38.84 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=83.5
Q ss_pred HHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 38 IRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 38 a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
+++.++.+++.|+ |.|-| |.-. .+..-.+.|..+++.+++.++ +|+.+..+... +...++..+.|++
T Consensus 27 i~~~A~~~~~~GA-diIDV----g~~~-----~~~eE~~r~~~~v~~l~~~~~--~plsIDT~~~~-v~eaaL~~~~G~~ 93 (261)
T PRK07535 27 IQKLALKQAEAGA-DYLDV----NAGT-----AVEEEPETMEWLVETVQEVVD--VPLCIDSPNPA-AIEAGLKVAKGPP 93 (261)
T ss_pred HHHHHHHHHHCCC-CEEEE----CCCC-----CchhHHHHHHHHHHHHHHhCC--CCEEEeCCCHH-HHHHHHHhCCCCC
Confidence 3444455678999 99975 3221 122335568889999988777 79999987533 4334443333666
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHH---HHHhhhccc---cEEE
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITET---AKAASFFLS---DGLI 191 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~---a~~a~~~~~---D~v~ 191 (251)
.+-. ..|.- ....+..+..+++++.-|-+. ....|.|. +.+.+++.. ...+..+|+ +.++
T Consensus 94 iINs---------Is~~~-~~~~~~~~l~~~~g~~vv~m~---~~~~g~P~-t~~~~~~~l~~~v~~a~~~GI~~~~Iil 159 (261)
T PRK07535 94 LINS---------VSAEG-EKLEVVLPLVKKYNAPVVALT---MDDTGIPK-DAEDRLAVAKELVEKADEYGIPPEDIYI 159 (261)
T ss_pred EEEe---------CCCCC-ccCHHHHHHHHHhCCCEEEEe---cCCCCCCC-CHHHHHHHHHHHHHHHHHcCCCHhHEEE
Confidence 6553 11110 112356677777776333221 11224442 222222222 222334566 3332
Q ss_pred ecCCCC---CCCCC---HHHHHHHHhcC-CCCEEEe-----cCC
Q psy9039 192 ITGNAT---GDPAD---VSQLMSVKNAV-DLPILIG-----SGV 223 (251)
Q Consensus 192 VTG~~~---g~~~~---~~~l~~vr~~~-~~PV~vG-----~GI 223 (251)
=.|..+ +.... ++.++++|+.. ..|+++| ||+
T Consensus 160 DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfgl 203 (261)
T PRK07535 160 DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGL 203 (261)
T ss_pred eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCC
Confidence 233321 11122 45566777765 7999998 777
No 314
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.96 E-value=1.1 Score=41.75 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS 241 (251)
..++.++++|+.+++||++- || +++.+..+.+ +|+++|.-
T Consensus 200 ~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 35788999999999999999 66 7888887776 99999975
No 315
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.95 E-value=0.6 Score=45.65 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred hhccccEEEecCCCCCCCCC-HHHHHHHHhcCCCCEEEecC-C-ChHhHHHhhc--CCEEEEe
Q psy9039 183 SFFLSDGLIITGNATGDPAD-VSQLMSVKNAVDLPILIGSG-V-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~~~PV~vG~G-I-~~~~v~~~~~--ADGvIVG 240 (251)
...|+|.++|+ ...+.... .+.++++|+..+.++.++.| | |++++..++. ||++.||
T Consensus 251 v~aGvd~i~vd-~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 251 VEAGADVLCID-SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHhCCCeEeec-CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEEC
Confidence 34699999998 44344332 57899999987655544444 4 8999999996 9999994
No 316
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.49 E-value=0.83 Score=41.47 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=89.5
Q ss_pred cCCCCccEEEEe-----ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCCh-HHH-HHHHHHcC
Q psy9039 46 VPVGVQHGVIVE-----NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCN-KAA-LATAQAAG 115 (251)
Q Consensus 46 ~~~Gv~D~i~ie-----N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~-~~~-~~ia~a~g 115 (251)
++.|+ +++.+. +.+|.| | .|-.+..-|...++++.+.++ +|+-+.. |-|+. +.. ..--...|
T Consensus 30 e~aGf-~Ai~~sg~~~a~~lG~p--D---~g~lt~~e~~~~~~~I~~~~~--iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 30 ERAGF-EAIYLSGAAVAASLGLP--D---LGITTLDEVAEDARRITRVTD--LPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred HHcCC-CEEEEcHHHHHHhCCCC--C---CCCCCHHHHHHHHHHHHhccC--CCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 45688 888765 333432 2 255677777788888888888 8988864 33320 100 11111223
Q ss_pred ccceeccccc-ccccC---CCceeecC--cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhh-h--cc
Q psy9039 116 LDFIRAESFV-FGHMA---DEGLMNAQ--AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAAS-F--FL 186 (251)
Q Consensus 116 ~~Fir~~~~~-~~~~~---~~Gli~~d--a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~-~--~~ 186 (251)
+.-+...-.+ ....| ...++..+ ...+...++.....+..|++..... ....+++..+.+. + .|
T Consensus 102 ~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~-------~~~g~deAI~Ra~ay~~AG 174 (285)
T TIGR02317 102 AAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDAR-------AVEGLDAAIERAKAYVEAG 174 (285)
T ss_pred CeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcc-------cccCHHHHHHHHHHHHHcC
Confidence 3222221000 00111 01111111 2222222222222234444422211 0123556666665 3 59
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE---EecCCCh-HhHHHhhc--CCEEEEeceE
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPIL---IGSGVTS-DNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~---vG~GI~~-~~v~~~~~--ADGvIVGS~~ 243 (251)
+|.+.+.|.+ +.+.++++.+..+.|++ ..+|-+| -+++++.+ ..-++.|+.+
T Consensus 175 AD~vfi~g~~-----~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~ 232 (285)
T TIGR02317 175 ADMIFPEALT-----SLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTA 232 (285)
T ss_pred CCEEEeCCCC-----CHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHH
Confidence 9999998743 46778888888888983 4445444 34555554 7888887643
No 317
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=90.45 E-value=0.86 Score=38.87 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=56.8
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC---CCCEEEecCC-ChHh
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV---DLPILIGSGV-TSDN 227 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~---~~PV~vG~GI-~~~~ 227 (251)
.+++.+...+|... ...+.+.+++.+.+....+|.+++|-..+...+.. +.++++|+.. +++|++||.. +++
T Consensus 102 ~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~- 180 (197)
T TIGR02370 102 NIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD- 180 (197)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH-
Confidence 55555555555333 35667888888888888999999998766554444 5677888873 4899999988 665
Q ss_pred HHHhhcCCEE
Q psy9039 228 VEHYMTADAL 237 (251)
Q Consensus 228 v~~~~~ADGv 237 (251)
.++.+.||+.
T Consensus 181 ~~~~~gad~~ 190 (197)
T TIGR02370 181 WADKIGADVY 190 (197)
T ss_pred HHHHhCCcEE
Confidence 4444457765
No 318
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=90.45 E-value=7 Score=36.73 Aligned_cols=55 Identities=13% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CCCcCCCCccEE-EEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 43 PPSVPVGVQHGV-IVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 43 ~~l~~~Gv~D~i-~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
..+.++|+ |+| ..||..+.||... -+...+..+.+++..+++....++..|+-..
T Consensus 153 ~~l~~gGv-D~Ikdde~~ge~~~~~~----eER~~~v~~av~~a~~~TG~~~~y~~nit~~ 208 (367)
T cd08205 153 YELALGGI-DLIKDDELLADQPYAPF----EERVRACMEAVRRANEETGRKTLYAPNITGD 208 (367)
T ss_pred HHHHhcCC-CeeeccccccCcccCCH----HHHHHHHHHHHHHHHHhhCCcceEEEEcCCC
Confidence 55678999 999 5567778888753 4566677778888887766544677776543
No 319
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=90.36 E-value=3 Score=35.88 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=60.2
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHH-hCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRK-VLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~-~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+.+++.++.+.+.|+ |.|-|-=+---|+..+. +..+-..-+..+++++++ ..+ +|+.+..+... +...++ ..
T Consensus 19 ~~a~~~a~~~~~~GA-diIDIg~~st~p~~~~v-~~~eE~~rl~~~l~~i~~~~~~--~plSIDT~~~~-v~~~aL--~~ 91 (210)
T PF00809_consen 19 DEAVKRAREQVEAGA-DIIDIGAESTRPGATPV-SEEEEMERLVPVLQAIREENPD--VPLSIDTFNPE-VAEAAL--KA 91 (210)
T ss_dssp HHHHHHHHHHHHTT--SEEEEESSTSSTTSSSS-HHHHHHHHHHHHHHHHHHHHTT--SEEEEEESSHH-HHHHHH--HH
T ss_pred HHHHHHHHHHHHhcC-CEEEecccccCCCCCcC-CHHHHHHHHHHHHHHHhccCCC--eEEEEECCCHH-HHHHHH--Hc
Confidence 455666788889999 99987333334555442 233344445556777776 445 79999998643 444444 44
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcc
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNV 154 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i 154 (251)
|++++-.- .|+- +..+..+..+++++.-|
T Consensus 92 g~~~ind~---------~~~~--~~~~~~~l~a~~~~~vV 120 (210)
T PF00809_consen 92 GADIINDI---------SGFE--DDPEMLPLAAEYGAPVV 120 (210)
T ss_dssp TSSEEEET---------TTTS--SSTTHHHHHHHHTSEEE
T ss_pred CcceEEec---------cccc--ccchhhhhhhcCCCEEE
Confidence 78876641 1110 14567788888887333
No 320
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.24 E-value=0.59 Score=43.69 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=40.7
Q ss_pred hccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 184 FFLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
..++|.+++-.++ |.... .+.++++|+.. ++||++|-=.|.+.+..++. ||++.||
T Consensus 118 ~agvD~ivID~a~-g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 118 EAGVDVIVIDSAH-GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HTT-SEEEEE-SS-TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HcCCCEEEccccC-ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 3699999998776 44333 47788999887 58988665339999999996 9999998
No 321
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.15 E-value=0.95 Score=35.37 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=43.1
Q ss_pred cHHHHHHHhhh-ccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHhhc-CCEEEEe
Q psy9039 174 DITETAKAASF-FLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHYMT-ADALIIG 240 (251)
Q Consensus 174 ~i~~~a~~a~~-~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~~~-ADGvIVG 240 (251)
..++..+.... ...|.+++|..........+.++.+|+.. +.||++||.. | ++.+ .... +|.++.|
T Consensus 26 ~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~-~~~~~~D~vv~G 97 (127)
T cd02068 26 SADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEI-LEEPGVDFVVIG 97 (127)
T ss_pred CHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHH-hcCCCCCEEEEC
Confidence 34444454443 57899999986544333346677888876 6888888877 4 4554 1223 9999988
No 322
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.09 E-value=0.82 Score=41.38 Aligned_cols=66 Identities=21% Similarity=0.373 Sum_probs=44.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc---CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA---VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~---~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
.+.+..+..+|+|.+-.-... +.++ +.+..+++. .++.+.+.||||.+|++++.. +|.+.+|+-..
T Consensus 192 leea~~a~~agaDiI~LDn~~---~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 192 LEDALKAAKAGADIIMLDNMT---PEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred HHHHHHHHHcCcCEEEECCCC---HHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 344555556799987665442 1122 223334442 246799999999999999997 99999998553
No 323
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.84 E-value=0.81 Score=42.49 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=41.3
Q ss_pred ccccEEEecCCCCCCCCC-HHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 185 FLSDGLIITGNATGDPAD-VSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~-~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++|++++==++ |.... .+.++++|+.. +++|+ +|-| |++.+++++. ||++-||
T Consensus 121 ~g~D~iviD~Ah-Ghs~~~i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 121 PALNFICIDVAN-GYSEHFVQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcCCCEEEEc
Confidence 589999885554 44433 57899999886 67755 5566 9999999996 9999887
No 324
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.82 E-value=0.86 Score=37.21 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=45.0
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
.+-+++++.|...-+|++++|+-..+..... ..++.+|+.- ++.| ++||+ .+++..++.+ .|+++
T Consensus 50 ~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v-~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILV-VVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEE-eecCccCchhHHHHHHhCcceee
Confidence 3456777777667899999999876555443 5677788775 4554 45555 7888777774 77664
No 325
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=89.50 E-value=1 Score=38.98 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=50.7
Q ss_pred hhhhhhHhhccCCC--CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHH
Q psy9039 155 LVFTDIKKKHSSHA--ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVE 229 (251)
Q Consensus 155 ~i~a~v~~k~~~~~--~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~ 229 (251)
.+++.....+|... ...+.+.+++.+.+....+|.+++|...+...+.. +.++++++.. ++||++||.. +.+-+.
T Consensus 106 ~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~~~~~ 185 (213)
T cd02069 106 NLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSRKHTA 185 (213)
T ss_pred HHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcCHHHHh
Confidence 44444444444332 34567888888888888999999998766444444 5577777664 7999999988 444444
No 326
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=89.46 E-value=0.37 Score=45.09 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=28.7
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEeceEee
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSHFKQ 245 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~~~~ 245 (251)
++||+-||+|+++|+.+++. .||+-||++-.+
T Consensus 213 ~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~ 247 (355)
T PRK14905 213 KIPVLYGGSVNLENANELIMKPHIDGLFIGRSAWD 247 (355)
T ss_pred ceeEEEeCcCCHHHHHHHhcCCCCCEEEechhhcc
Confidence 48999999999999999884 999999998664
No 327
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=89.36 E-value=2 Score=39.76 Aligned_cols=158 Identities=12% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCCcCCCCccEEEEeecCCC---CccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE-EE----eeCChHHHHHHHHHc
Q psy9039 43 PPSVPVGVQHGVIVENMHDV---PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV-QI----LSGCNKAALATAQAA 114 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~---Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv-n~----~~N~~~~~~~ia~a~ 114 (251)
+.+.++|+ |.|.+-.-+++ =|.+ --+++.+-|..-++.|++..+ .|+.+ .+ |--++..++.-|
T Consensus 49 ~i~d~aGv-D~ILVGDSlgmv~lG~~~---T~~Vtld~mi~H~~aV~Rga~--~a~vVaDmPfgSY~~s~e~av~nA--- 119 (332)
T PLN02424 49 VHVDSAGI-DVCLVGDSAAMVVHGHDT---TLPITLDEMLVHCRAVARGAN--RPLLVGDLPFGSYESSTDQAVESA--- 119 (332)
T ss_pred HHHHHcCC-CEEEECCcHHHHhcCCCC---CCCcCHHHHHHHHHHHhccCC--CCEEEeCCCCCCCCCCHHHHHHHH---
Confidence 34578999 99998533322 1222 126788889999999998877 67776 22 211212222111
Q ss_pred CccceecccccccccCCCceeecCc-chhHHHHHhcCCCcchhhhh--hHhhccCCC-----C-CCcccHHHHHHHhh--
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQA-GPLLRYRKQIGADNVLVFTD--IKKKHSSHA-----I-TADVDITETAKAAS-- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da-~e~~~~r~~l~~~~i~i~a~--v~~k~~~~~-----~-~~~~~i~~~a~~a~-- 183 (251)
.++++. .|.+++=..+. .+....-+.+-...|.+++- +++++-..+ . .+.....++.+.|.
T Consensus 120 -~rl~~e-------aGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~al 191 (332)
T PLN02424 120 -VRMLKE-------GGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALAL 191 (332)
T ss_pred -HHHHHH-------hCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHH
Confidence 234332 12222222222 22222222222345666542 233321111 0 11123334445554
Q ss_pred -hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE-EecCC
Q psy9039 184 -FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL-IGSGV 223 (251)
Q Consensus 184 -~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~-vG~GI 223 (251)
..||+++++-|.- .++.+++.+.+++|+| +|.|-
T Consensus 192 e~AGAf~ivLE~Vp------~~la~~It~~l~IPtIGIGAG~ 227 (332)
T PLN02424 192 QEAGCFAVVLECVP------APVAAAITSALQIPTIGIGAGP 227 (332)
T ss_pred HHcCCcEEEEcCCc------HHHHHHHHHhCCCCEEeecCCC
Confidence 3699999987652 3367788888999986 44554
No 328
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.17 E-value=1.7 Score=34.99 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-C-CCCEEEecCC
Q psy9039 170 TADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-V-DLPILIGSGV 223 (251)
Q Consensus 170 ~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~-~~PV~vG~GI 223 (251)
..+.+.+++.+.+....+|.+++|-..+...... +.+.++++. . ++++++||.+
T Consensus 38 G~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 38 GVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 4557888998888888999999998765444333 567778776 3 7899999998
No 329
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=89.08 E-value=3.7 Score=35.29 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=78.9
Q ss_pred CccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChH----HHHHHHHHcCccceeccccc
Q psy9039 50 VQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNK----AALATAQAAGLDFIRAESFV 125 (251)
Q Consensus 50 v~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~----~~~~ia~a~g~~Fir~~~~~ 125 (251)
+ |.+.+ |.|+-+. -|+ +.++++|+... ++-+.+=..+-. .....+...|++++-++.+.
T Consensus 24 v-~~iKi----g~~l~~~--~G~-------~~v~~l~~~~~---~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~ 86 (213)
T TIGR01740 24 I-EVIKV----GIDLLLD--GGD-------KIIDELAKLNK---LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVA 86 (213)
T ss_pred C-cEEEE----CHHHHHh--cCH-------HHHHHHHHcCC---CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 7 77754 7777653 465 56777776533 555666444411 11222345677777765333
Q ss_pred ccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCC-CCcccHHHHHHHhhhccccEEEecCCCCCCCCCHH
Q psy9039 126 FGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAI-TADVDITETAKAASFFLSDGLIITGNATGDPADVS 204 (251)
Q Consensus 126 ~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~-~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~ 204 (251)
|. + -...+.++.++.+ ..+.+++.....-+..+. ...+...+.++.+...|.++++ | ..+
T Consensus 87 g~----~-----~l~~~~~~~~~~~-~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v-~--------~~~ 147 (213)
T TIGR01740 87 GS----E-----SVEAAKEAASEGG-RGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV-C--------SAE 147 (213)
T ss_pred CH----H-----HHHHHHHHhhcCC-CeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE-e--------CHH
Confidence 31 0 0222333333333 234444322211000000 0001222223333334666653 2 244
Q ss_pred HHHHHHhcCCCCEEEecCCChH---hH--------HHhhc--CCEEEEeceEeec
Q psy9039 205 QLMSVKNAVDLPILIGSGVTSD---NV--------EHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI~~~---~v--------~~~~~--ADGvIVGS~~~~~ 246 (251)
.+.++|+..+--+++-.||.++ .. .++.+ ||-+|+||++-+.
T Consensus 148 ~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~ 202 (213)
T TIGR01740 148 EAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAA 202 (213)
T ss_pred HHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCC
Confidence 5666666653246778889644 22 45554 9999999998653
No 330
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=89.07 E-value=0.55 Score=39.34 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=41.5
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.++.+...++|.+-.--.. +.++ +.++++++.. .+-+.+.||||++|+.++.. +|.+.+||..
T Consensus 91 ee~~ea~~~g~d~I~lD~~~---~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMS---PEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-C---HHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHH
T ss_pred HHHHHHHHhCCCEEEecCcC---HHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhh
Confidence 34566655789988664321 1122 2344444433 58889999999999999997 8999999853
No 331
>KOG3055|consensus
Probab=89.00 E-value=0.34 Score=41.56 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCEEEecCCChHhHHHhhc--CCEEEEeceEeecCeecC
Q psy9039 214 DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQGGRTFL 251 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~g~~~~ 251 (251)
+--+-+||||+.+|..+.++ |.-|||-|++-.+|.|.|
T Consensus 82 Pg~LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL 121 (263)
T KOG3055|consen 82 PGGLQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDL 121 (263)
T ss_pred CCceeecCccChHHHHHHHHhcCceEEEEEEeccCCcccH
Confidence 45578899999999999996 999999999999998864
No 332
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=89.00 E-value=1.1 Score=44.01 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=43.2
Q ss_pred HHHhhhccccEEEecCCCCCCCC-CHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPA-DVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~-~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
++.....|+|.+.+--++ |... .++.++++|+.. +.+|+ .++| |.+++..+.+ ||++.||
T Consensus 253 ~~~l~~ag~d~i~iD~~~-g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQ-GDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHcCCCEEEEeCCC-CCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEEEC
Confidence 344445699999886553 3333 247899999977 45554 6677 8999988886 9999997
No 333
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.95 E-value=5.6 Score=36.22 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=87.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+-|++.|+ |+|.+ .|. .. ..--.+.+--.++++.+++.....+|+.+-+-.|...++...+..+ +
T Consensus 32 ~~li~~Gv-~gi~~---~Gt---tG-E~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a-----~-- 96 (299)
T COG0329 32 EFLIAAGV-DGLVV---LGT---TG-ESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA-----E-- 96 (299)
T ss_pred HHHHHcCC-CEEEE---CCC---Cc-cchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH-----H--
Confidence 66889999 99986 222 10 0011223333345556665554446777777667545566654222 2
Q ss_pred cccccccCCCceee-------cCcchhHHHHHhcCC-Ccc-hhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEec
Q psy9039 123 SFVFGHMADEGLMN-------AQAGPLLRYRKQIGA-DNV-LVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIIT 193 (251)
Q Consensus 123 ~~~~~~~~~~Gli~-------~da~e~~~~r~~l~~-~~i-~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VT 193 (251)
.+|.+|++. +..+++..+.+.+-. -+. -+++++-...+ .+.+.+.+.+.++... +.
T Consensus 97 -----~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg-----~~l~~e~i~~la~~~n-----iv 161 (299)
T COG0329 97 -----KLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG-----VDLSPETIARLAEHPN-----IV 161 (299)
T ss_pred -----hcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC-----CCCCHHHHHHHhcCCC-----EE
Confidence 233444332 223444443333321 112 12232222222 2344455544444211 22
Q ss_pred CCCCCCCCCHHHHHHHHhcCCC-CEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 194 GNATGDPADVSQLMSVKNAVDL-PILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 194 G~~~g~~~~~~~l~~vr~~~~~-PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
|.+. ...++..+.++++.... ...+.+|-..-.+..+.. ++|+|-+++
T Consensus 162 giKd-~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 162 GVKD-SSGDLDRLEEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTA 211 (299)
T ss_pred EEEe-CCcCHHHHHHHHHhcCccCeeEEeCchHHHHHHHhCCCCeEEeccc
Confidence 3221 22367778877776644 678888887777777766 999998875
No 334
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=88.87 E-value=0.82 Score=41.36 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEece
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
.+.++.+...|+|.+..-+.. +.++ +.++.+++. .++.+.+.||||++|+.++.. +|.+++|+-
T Consensus 198 leea~ea~~~GaDiI~lDn~~---~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKFT---PQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHHHHHHHcCcCEEEECCCC---HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcc
Confidence 344566656799998886322 1122 334445432 367899999999999999997 999999974
No 335
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.63 E-value=3.4 Score=37.41 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=84.5
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy9039 15 VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSV 93 (251)
Q Consensus 15 ~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~ 93 (251)
-||-.. |+.+++...+.+ +.+.+.|+ |||.+- +.+..+. .+.+-=.++++.+++.....+
T Consensus 10 TPf~~d--g~iD~~~l~~lv--------~~~~~~Gv-~gi~v~GstGE~~~--------Ls~~Er~~l~~~~~~~~~g~~ 70 (294)
T TIGR02313 10 TPFKRN--GDIDEEALRELI--------EFQIEGGS-HAISVGGTSGEPGS--------LTLEERKQAIENAIDQIAGRI 70 (294)
T ss_pred CCcCCC--CCcCHHHHHHHH--------HHHHHcCC-CEEEECccCccccc--------CCHHHHHHHHHHHHHHhCCCC
Confidence 355444 555555444444 66778999 999862 1111211 111112234444444433336
Q ss_pred cEEEEEeeCChHHHHHHH---HHcCccceecccccccccCCCceeecCcchhHHHHHhcC-CC-cchhh-hhhHhhccCC
Q psy9039 94 PVGVQILSGCNKAALATA---QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIG-AD-NVLVF-TDIKKKHSSH 167 (251)
Q Consensus 94 P~Gvn~~~N~~~~~~~ia---~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~-~~-~i~i~-a~v~~k~~~~ 167 (251)
|+.+.+-.|....++..+ ...|++.+-. ...-...+..+++.+|-+.+- .. ++.++ +++-...+..
T Consensus 71 pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v--------~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~ 142 (294)
T TIGR02313 71 PFAPGTGALNHDETLELTKFAEEAGADAAMV--------IVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQE 142 (294)
T ss_pred cEEEECCcchHHHHHHHHHHHHHcCCCEEEE--------cCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcC
Confidence 887777766533444433 2234333322 111122233456666555442 11 23333 2221122222
Q ss_pred CCCCcccHHHHHHHhh-hccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 168 AITADVDITETAKAAS-FFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 168 ~~~~~~~i~~~a~~a~-~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
.+.+.+.+.++ .-.+- |-+.. ..++..+.++.+.. ++.|+.| -...-+..+.. |||.|.|.+
T Consensus 143 -----l~~~~l~~L~~~~pnv~-----giK~s-s~d~~~~~~~~~~~~~~~~v~~G--~d~~~~~~l~~Ga~G~is~~~ 208 (294)
T TIGR02313 143 -----IAPKTMARLRKDCPNIV-----GAKES-NKDFEHLNHLFLEAGRDFLLFCG--IELLCLPMLAIGAAGSIAATA 208 (294)
T ss_pred -----CCHHHHHHHHhhCCCEE-----EEEeC-CCCHHHHHHHHHhcCCCeEEEEc--chHHHHHHHHCCCCEEEecHH
Confidence 33444444442 22222 22211 22456666655444 3444444 33333444445 999998864
No 336
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=88.08 E-value=9.4 Score=35.16 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHhhh---ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 176 TETAKAASF---FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 176 ~~~a~~a~~---~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
.+..+++.. -|+|.+.|- .+ -+-++.|+++|+.+++||.+
T Consensus 225 ~eAlre~~~Di~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~lPvaa 267 (320)
T cd04823 225 REALREVALDIAEGADMVMVK---PG-MPYLDIIRRVKDEFGVPTFA 267 (320)
T ss_pred HHHHHHHHhhHHhCCCEEEEc---CC-chHHHHHHHHHHhcCCCEEE
Confidence 333455542 599999883 21 12368899999999999885
No 337
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.74 E-value=2.6 Score=38.84 Aligned_cols=68 Identities=18% Similarity=0.389 Sum_probs=45.1
Q ss_pred cHHHHHHHhhhccccEEEecCC------CCCCCCCH----HHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEE
Q psy9039 174 DITETAKAASFFLSDGLIITGN------ATGDPADV----SQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~------~~g~~~~~----~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvI 238 (251)
+.+++.+..+...+|++-+.=. ......+. +.|+.+++.+++||++ |+|.+.+.+..+.+ +|++.
T Consensus 128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAID 207 (326)
T ss_pred CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 3344444444456777755211 11112233 5688888888999999 99989888888775 99999
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
|+.
T Consensus 208 vsG 210 (326)
T cd02811 208 VAG 210 (326)
T ss_pred ECC
Confidence 965
No 338
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=87.60 E-value=15 Score=34.46 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CCCcCCCCccEE-EEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee
Q psy9039 43 PPSVPVGVQHGV-IVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS 101 (251)
Q Consensus 43 ~~l~~~Gv~D~i-~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~ 101 (251)
..+..+|+ |.| --||..+-||..- -+...+..+.+++..+++...+++-+|+-.
T Consensus 148 ~~~~~gGv-D~IKdDe~l~~~~~~p~----~eRv~~v~~av~~a~~eTG~~~~y~~Nita 202 (364)
T cd08210 148 YAFALGGI-DIIKDDHGLADQPFAPF----EERVKACQEAVAEANAETGGRTLYAPNVTG 202 (364)
T ss_pred HHHHhcCC-CeeecCccccCccCCCH----HHHHHHHHHHHHHHHhhcCCcceEEEecCC
Confidence 44567999 999 5567888888753 456667777788888777755688888754
No 339
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.41 E-value=5.4 Score=34.77 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |.|-+.+.. |.. ....++++++++..+. .++.+++ .|. ...+..+...|.+.++..
T Consensus 26 ~~L~~~GV-~~IEv----g~~~~~~~~--p~~-~~~~~~i~~l~~~~~~-~~~~~l~-~~~-~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 26 EALDEAGV-DSIEV----GSGASPKAV--PQM-EDDWEVLRAIRKLVPN-VKLQALV-RNR-EKGIERALEAGVDEVRIF 94 (265)
T ss_pred HHHHHcCC-CEEEe----ccCcCcccc--ccC-CCHHHHHHHHHhccCC-cEEEEEc-cCc-hhhHHHHHhCCcCEEEEE
Confidence 66788999 99975 665554211 222 1234567778776532 3665544 343 455666666777777753
Q ss_pred ccccc-------ccCCCceeecCcchhHHHHHhcCCCcchhhh-hhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 123 SFVFG-------HMADEGLMNAQAGPLLRYRKQIGADNVLVFT-DIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 123 ~~~~~-------~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a-~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
....- ..+.++ ......+..++.++.|. .+.+.. ++.. + ..+...+.+.++.+...|+|.+.+.-
T Consensus 95 ~~~s~~~~~~~~~~~~~~-~~~~~~~~i~~a~~~G~-~v~~~~~~~~~----~-~~~~~~l~~~~~~~~~~g~~~i~l~D 167 (265)
T cd03174 95 DSASETHSRKNLNKSREE-DLENAEEAIEAAKEAGL-EVEGSLEDAFG----C-KTDPEYVLEVAKALEEAGADEISLKD 167 (265)
T ss_pred EecCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHCCC-eEEEEEEeecC----C-CCCHHHHHHHHHHHHHcCCCEEEech
Confidence 10000 000000 11123444555566554 222211 1110 0 01223455566666667899888744
Q ss_pred CCCCC--CCCH-HHHHHHHhcCC-CCEEEec
Q psy9039 195 NATGD--PADV-SQLMSVKNAVD-LPILIGS 221 (251)
Q Consensus 195 ~~~g~--~~~~-~~l~~vr~~~~-~PV~vG~ 221 (251)
+ .|. +... ++++.+|+..+ +|+-+=+
T Consensus 168 t-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 168 T-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred h-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3 222 2233 56778888764 4444433
No 340
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=87.39 E-value=6.3 Score=36.80 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=75.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|-..+ . -...++++++..+ +.-+..+.......+..+...|.+.++..
T Consensus 30 ~~L~~~Gv-~~IEv----G~p~~~~---~------~~e~i~~i~~~~~---~~~i~~~~r~~~~di~~a~~~g~~~i~i~ 92 (365)
T TIGR02660 30 RALDEAGV-DELEV----GIPAMGE---E------ERAVIRAIVALGL---PARLMAWCRARDADIEAAARCGVDAVHIS 92 (365)
T ss_pred HHHHHcCC-CEEEE----eCCCCCH---H------HHHHHHHHHHcCC---CcEEEEEcCCCHHHHHHHHcCCcCEEEEE
Confidence 66889999 99975 7876532 1 1234555554423 11233333333455666666777877753
Q ss_pred cccccccCCC------c----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADE------G----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~------G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ..++. + -......+..++.++.|. .+.+ ....+.. ++...+.++++.+..+|+|.+.+
T Consensus 93 ~----~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~----~~ed~~r--~~~~~l~~~~~~~~~~Ga~~i~l 161 (365)
T TIGR02660 93 I----PVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSV----GGEDASR--ADPDFLVELAEVAAEAGADRFRF 161 (365)
T ss_pred E----ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEE----eecCCCC--CCHHHHHHHHHHHHHcCcCEEEE
Confidence 1 11100 0 001113456667777664 2322 1111111 23345556666665578998877
Q ss_pred cCCCCCC-CC-CH-HHHHHHHhcCCCCE
Q psy9039 193 TGNATGD-PA-DV-SQLMSVKNAVDLPI 217 (251)
Q Consensus 193 TG~~~g~-~~-~~-~~l~~vr~~~~~PV 217 (251)
.=+- |. .| .. ++++.+++..++|+
T Consensus 162 ~DT~-G~~~P~~v~~lv~~l~~~~~v~l 188 (365)
T TIGR02660 162 ADTV-GILDPFSTYELVRALRQAVDLPL 188 (365)
T ss_pred cccC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence 4332 22 22 23 66778888776664
No 341
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=87.23 E-value=11 Score=33.32 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=77.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccce
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDFI 119 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~Fi 119 (251)
+.|.+.|+ |+|.+ +|. .. .---.+.+--.++++.+++.....+|+.+.+-.+....+...+ ...|++.+
T Consensus 25 ~~l~~~Gv-~gi~~---~Gs---tG-E~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v 96 (281)
T cd00408 25 EFLIEAGV-DGLVV---LGT---TG-EAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGV 96 (281)
T ss_pred HHHHHcCC-CEEEE---CCC---Cc-ccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEE
Confidence 66777899 99976 332 00 0001222333445555655543336877777665533333332 22344333
Q ss_pred ecccccccccCCCceeecCcchhHHHHHhcCC-Ccchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCC
Q psy9039 120 RAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 120 r~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~ 197 (251)
-. ...-...+..+++.+|-+.+-. .++.++ .+.-...|. +.+.+.+.+-+.... |.|-+.
T Consensus 97 ~v--------~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~-----~l~~~~~~~L~~~~~-----v~giK~ 158 (281)
T cd00408 97 LV--------VPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGV-----DLSPETIARLAEHPN-----IVGIKD 158 (281)
T ss_pred EE--------CCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCC-----CCCHHHHHHHhcCCC-----EEEEEe
Confidence 32 1111222234556665555422 233332 221111122 234444444433212 223232
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHH-hhc-CCEEEEece
Q psy9039 198 GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEH-YMT-ADALIIGSH 242 (251)
Q Consensus 198 g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~-~~~-ADGvIVGS~ 242 (251)
. ..+...+.++++...-.+.+-.|- .+.+.. +.. ++|++.|++
T Consensus 159 s-~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 159 S-SGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred C-CCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 2 245666666666542233333444 334444 445 999998863
No 342
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.13 E-value=15 Score=33.37 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=41.7
Q ss_pred hhccccEEEec-CCCCCCC---C--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGDP---A--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~~---~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |...|.. + +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=|+|.|
T Consensus 165 ~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l 235 (286)
T PRK12738 165 ELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL 235 (286)
T ss_pred HHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 33589999774 5444432 2 468899999999999988 55666788988774 4444455544
No 343
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=86.58 E-value=14 Score=33.45 Aligned_cols=60 Identities=18% Similarity=0.413 Sum_probs=41.6
Q ss_pred hccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-|+|++-|+ |+..|. .+ +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=|+|.+
T Consensus 166 ~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 235 (284)
T PRK09195 166 ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVATEL 235 (284)
T ss_pred HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3589999764 544443 22 468899999999999988 56667788888774 4444455544
No 344
>PRK14566 triosephosphate isomerase; Provisional
Probab=86.33 E-value=0.77 Score=41.14 Aligned_cols=29 Identities=31% Similarity=0.530 Sum_probs=26.6
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+++++. -||+.||.+
T Consensus 212 ~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgA 243 (260)
T PRK14566 212 NIRILYGGSVTPSNAADLFAQPDVDGGLIGGA 243 (260)
T ss_pred cceEEecCCCCHhHHHHHhcCCCCCeEEechH
Confidence 58999999999999999985 999999965
No 345
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.21 E-value=1.6 Score=39.73 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=44.4
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhc-CCCCEEEecCCChHhHHHhhc--CCEEEEeceEe
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNA-VDLPILIGSGVTSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~-~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
+++ .+..|...|+|.+-.-... +.++ +.+..+|+. .++.+.+.||||++|++++.. +|.+.+|+-..
T Consensus 208 tl~-ea~eal~~gaDiI~LDnm~---~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 208 SLE-QLDEVLAEGAELVLLDNFP---VWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHH-HHHHHHHcCCCEEEeCCCC---HHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhc
Confidence 444 4455555789998765221 1122 223333333 257899999999999999997 99999998553
No 346
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=86.02 E-value=5.2 Score=37.41 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
++..+++++.|+++|+ |.|-+ -+ .+. . .+..++++++.++ +|+...+.+|. ..++.. ...
T Consensus 41 v~atv~Qi~~L~~aGc-eiVRv----av--~~~-----~----~a~al~~I~~~~~--iPlvADIHFd~-~lAl~a-~~~ 100 (360)
T PRK00366 41 VEATVAQIKRLARAGC-EIVRV----AV--PDM-----E----AAAALPEIKKQLP--VPLVADIHFDY-RLALAA-AEA 100 (360)
T ss_pred HHHHHHHHHHHHHcCC-CEEEE----cc--CCH-----H----HHHhHHHHHHcCC--CCEEEecCCCH-HHHHHH-HHh
Confidence 3455555599999999 99964 22 221 1 3456778888888 89999999975 333332 346
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHH-HHhh---
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETA-KAAS--- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a-~~a~--- 183 (251)
|++-+|.|. | .-|-+.....++.+.+++.+. .|.+ =.++..++|-| ++ +.+.+.| +.++
T Consensus 101 G~~~iRINP--G----Nig~~~~~v~~vv~~ak~~~i-pIRIGvN~GSL~~~~~~~yg~~--t~-eamveSAl~~~~~le 170 (360)
T PRK00366 101 GADALRINP--G----NIGKRDERVREVVEAAKDYGI-PIRIGVNAGSLEKDLLEKYGEP--TP-EALVESALRHAKILE 170 (360)
T ss_pred CCCEEEECC--C----CCCchHHHHHHHHHHHHHCCC-CEEEecCCccChHHHHHHcCCC--CH-HHHHHHHHHHHHHHH
Confidence 688899861 1 112222235666777777665 3333 13556666543 22 2233333 2222
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
..+=+=+++|=..+......+..+.+.+.++.|+=+|
T Consensus 171 ~~~f~~iviS~KsS~v~~~i~ayrlla~~~dyPLHlG 207 (360)
T PRK00366 171 ELGFDDIKISVKASDVQDLIAAYRLLAKRCDYPLHLG 207 (360)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhcCCCCceec
Confidence 2344666777665554445566667777889998775
No 347
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=85.91 E-value=3.1 Score=40.76 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=79.6
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+..++.+..+.+.|+ |.|-| |..-..| ++. -+..+++.+++.++ +|+.+..+.. ..+..|...|
T Consensus 165 ~~i~~~A~~~~~~GA-DIIDI----G~~st~p---~~~---~v~~~V~~l~~~~~--~pISIDT~~~---~v~eaAL~aG 228 (499)
T TIGR00284 165 DGIEGLAARMERDGA-DMVAL----GTGSFDD---DPD---VVKEKVKTALDALD--SPVIADTPTL---DELYEALKAG 228 (499)
T ss_pred HHHHHHHHHHHHCCC-CEEEE----CCCcCCC---cHH---HHHHHHHHHHhhCC--CcEEEeCCCH---HHHHHHHHcC
Confidence 344555566778999 99976 4433333 333 37778888887777 7999998753 3344455568
Q ss_pred ccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-cC
Q psy9039 116 LDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-TG 194 (251)
Q Consensus 116 ~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-TG 194 (251)
++++-. ..|. ...++.+..++.++.-| ++. .. .. ..-..+.+..+.+...|.+-+++ -|
T Consensus 229 AdiINs---------Vs~~---~~d~~~~l~a~~g~~vV-lm~----~~-~~--~~~~~l~~~ie~a~~~Gi~~IIlDPg 288 (499)
T TIGR00284 229 ASGVIM---------PDVE---NAVELASEKKLPEDAFV-VVP----GN-QP--TNYEELAKAVKKLRTSGYSKVAADPS 288 (499)
T ss_pred CCEEEE---------CCcc---chhHHHHHHHHcCCeEE-EEc----CC-CC--chHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 887663 1121 12345566666665222 221 00 00 00022334444444456644433 11
Q ss_pred CCC---CCCCCHHHHHHHHhcCCCCEEEecC
Q psy9039 195 NAT---GDPADVSQLMSVKNAVDLPILIGSG 222 (251)
Q Consensus 195 ~~~---g~~~~~~~l~~vr~~~~~PV~vG~G 222 (251)
-.. +....++.++++|+..+.|+++|-|
T Consensus 289 lg~~~~~l~~sL~~l~~~r~~~~~Pil~GvS 319 (499)
T TIGR00284 289 LSPPLLGLLESIIRFRRASRLLNVPLVFGAA 319 (499)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCCcEEEeec
Confidence 111 0011123444555566899999965
No 348
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.89 E-value=2.8 Score=38.01 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=42.7
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.+..+...|+|.+-.-.. +.+.+++..+. ...|+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 205 eea~ea~~~gaDiI~LDn~------s~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 205 DQLEEALELGVDAVLLDNM------TPDTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred HHHHHHHHcCCCEEEeCCC------CHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChhh
Confidence 3455555668998765322 33444443332 257899999999999999997 9999999854
No 349
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=85.62 E-value=8.5 Score=34.73 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=77.7
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.|.+.|+ |||.+- +-+-++.- +.+--.++++.+.+.....+|+.+.+-.|. ..++..+ ...|++.
T Consensus 33 ~~l~~~Gv-~gi~v~GstGE~~~L--------t~eEr~~v~~~~~~~~~g~~pvi~gv~~~t-~~ai~~a~~a~~~Gada 102 (296)
T TIGR03249 33 EWLLGYGL-EALFAAGGTGEFFSL--------TPAEYEQVVEIAVSTAKGKVPVYTGVGGNT-SDAIEIARLAEKAGADG 102 (296)
T ss_pred HHHHhcCC-CEEEECCCCcCcccC--------CHHHHHHHHHHHHHHhCCCCcEEEecCccH-HHHHHHHHHHHHhCCCE
Confidence 66778999 999862 22222222 222223344444444333357777765442 3444433 2233333
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCC-Ccchhh-hhhHhhccCCCCCCcccHHHHHHHhh-hccccEEEecCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVF-TDIKKKHSSHAITADVDITETAKAAS-FFLSDGLIITGN 195 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~-~~~~D~v~VTG~ 195 (251)
+-. ...-...+..+++.+|.+.+-. .++.++ ++ ..+. +.+.+.+.+-+. .-. |.|-
T Consensus 103 v~~--------~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~-----~l~~~~~~~La~~~~n-----vvgi 161 (296)
T TIGR03249 103 YLL--------LPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNA-----VLNADTLERLADRCPN-----LVGF 161 (296)
T ss_pred EEE--------CCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCC-----CCCHHHHHHHHhhCCC-----EEEE
Confidence 221 1111222334566666555421 122222 21 2222 234444444443 222 2232
Q ss_pred CCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHH-hhc-CCEEEEece
Q psy9039 196 ATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEH-YMT-ADALIIGSH 242 (251)
Q Consensus 196 ~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~-~~~-ADGvIVGS~ 242 (251)
+.. ..+++.+.++++.. +..|+.|++.....+-. +.. |+|+|.|.+
T Consensus 162 Kds-~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G~is~~~ 211 (296)
T TIGR03249 162 KDG-IGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIF 211 (296)
T ss_pred EeC-CCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 221 23566666665543 56777777664444444 334 999997754
No 350
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=85.50 E-value=3.6 Score=38.48 Aligned_cols=44 Identities=16% Similarity=0.413 Sum_probs=35.5
Q ss_pred CHHHHHHHHhcC------CCCEEEecCCChHhHHHhhc----CCEEEEeceEee
Q psy9039 202 DVSQLMSVKNAV------DLPILIGSGVTSDNVEHYMT----ADALIIGSHFKQ 245 (251)
Q Consensus 202 ~~~~l~~vr~~~------~~PV~vG~GI~~~~v~~~~~----ADGvIVGS~~~~ 245 (251)
..++++++|+.. ++-|++.|||++++++++.. .|+.=|||++..
T Consensus 262 ~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 262 NPELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred cHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCccccc
Confidence 356677777643 45699999999999999984 799999999976
No 351
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=85.47 E-value=1.9 Score=38.27 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.+++.++.+.+.|+ |.|-|-=+-..|.+.++ +..+=.+-+..+++.+++.++ +|+.+..+.. ..+..|...|+
T Consensus 25 ~~~~~a~~~~~~GA-diIDvG~~st~p~~~~~-~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~~---~v~~aaL~~g~ 97 (258)
T cd00423 25 KALEHARRMVEEGA-DIIDIGGESTRPGAEPV-SVEEELERVIPVLRALAGEPD--VPISVDTFNA---EVAEAALKAGA 97 (258)
T ss_pred HHHHHHHHHHHCCC-CEEEECCCcCCCCCCcC-CHHHHHHHHHHHHHHHHhcCC--CeEEEeCCcH---HHHHHHHHhCC
Confidence 33444455678899 99987333334555553 222333457888999987777 7999998753 33445555566
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
+.+-. ..|. ..+ .+..+..+++++
T Consensus 98 ~iINd---------is~~-~~~-~~~~~l~~~~~~ 121 (258)
T cd00423 98 DIIND---------VSGG-RGD-PEMAPLAAEYGA 121 (258)
T ss_pred CEEEe---------CCCC-CCC-hHHHHHHHHcCC
Confidence 66553 1111 111 456677777776
No 352
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.23 E-value=2.4 Score=34.87 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=40.2
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC---CCCEEEecCC-C----h----HhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV---DLPILIGSGV-T----S----DNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~---~~PV~vG~GI-~----~----~~v~~~~~--ADGvI 238 (251)
..+++.++.....|+|++.++| +.++.+++.. ++|+++|-|- + . +.++++.+ ||++.
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3455555555557999999998 5566665554 4899988877 3 2 33445554 99998
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
+-.
T Consensus 84 v~~ 86 (201)
T cd00945 84 VVI 86 (201)
T ss_pred Eec
Confidence 753
No 353
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.97 E-value=3.1 Score=37.94 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=43.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
++ +.+..+...|+|.+-.-.. +.+.++++.+. .++.+-+.||||.+|++++.. +|.+.+|+-.
T Consensus 206 tl-eea~~a~~agaDiImLDnm------spe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 206 SL-AAAEEAAAAGADIIMLDNM------SLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred CH-HHHHHHHHcCCCEEEECCC------CHHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 44 4456665679999866322 23333332222 157899999999999999996 9999999744
No 354
>PRK08185 hypothetical protein; Provisional
Probab=84.97 E-value=21 Score=32.42 Aligned_cols=59 Identities=17% Similarity=0.333 Sum_probs=40.1
Q ss_pred ccccEEEe-----cCC-CCCCCC--CHHHHHHHHhcCCCCEEEecCC-C-hHhHHHhhc--CCEEEEeceE
Q psy9039 185 FLSDGLII-----TGN-ATGDPA--DVSQLMSVKNAVDLPILIGSGV-T-SDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 185 ~~~D~v~V-----TG~-~~g~~~--~~~~l~~vr~~~~~PV~vG~GI-~-~~~v~~~~~--ADGvIVGS~~ 243 (251)
-|+|++.+ -|. .++..+ +++.|+++++.+++|+++=||+ . .+++++... .-=+=|+|.+
T Consensus 161 TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 161 TGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred hCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 48999988 443 222122 4688999999999999998888 3 577887764 4434444443
No 355
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=84.93 E-value=3.7 Score=37.69 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred ccccEEEecCCCC--C-CCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 185 FLSDGLIITGNAT--G-DPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 185 ~~~D~v~VTG~~~--g-~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.|+|.+-.-..+. . ...+.+.+++..+.. ..|+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCccc
Confidence 7899987755421 1 122455555444332 47899999999999999997 9999998744
No 356
>KOG0538|consensus
Probab=84.71 E-value=3.4 Score=38.02 Aligned_cols=40 Identities=13% Similarity=0.336 Sum_probs=34.4
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+++.|+-+|+.+++||++=|=+|.+++..+.+ ++|+||.-
T Consensus 211 ~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSN 252 (363)
T KOG0538|consen 211 SWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSN 252 (363)
T ss_pred ChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeC
Confidence 57899999999999999876669999888876 99999964
No 357
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=84.59 E-value=1.8 Score=44.26 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=48.8
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEE
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALI 238 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvI 238 (251)
.+.+++++.+...++|.+++++..+...... ..++.+|+.- +++|++||.+.++....+.. +|++|
T Consensus 620 ~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i 690 (714)
T PRK09426 620 QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDYDFLYEAGVAAIF 690 (714)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhHHHHHhCCCCEEE
Confidence 5677777777778999999999876554444 5677788773 57889888877766655554 88876
No 358
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=84.59 E-value=6 Score=36.50 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHhh--h-ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE
Q psy9039 175 ITETAKAAS--F-FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI 219 (251)
Q Consensus 175 i~~~a~~a~--~-~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v 219 (251)
..+..+.+. . -|+|.+.|- .+ -+-++.|+++|+.+++|+++
T Consensus 229 ~~EAlre~~~D~~EGAD~lMVK---Pa-l~YLDIi~~~k~~~~~P~~a 272 (324)
T PF00490_consen 229 RREALREAELDIEEGADILMVK---PA-LPYLDIIRRVKERFDLPVAA 272 (324)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEE---SS-GGGHHHHHHHHHHCTS-EEE
T ss_pred HHHHHHHhhhhHhhCCCEEEee---cc-hhHHHHHHHHHHhcCCCEEE
Confidence 344445554 2 599999983 21 22368899999999999986
No 359
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=84.57 E-value=5.1 Score=36.28 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHhhhccccEEEecCCCC--CCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNAT--GDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~--g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
+.+.++.+...++|++.++-.-. +.....+.++++|+.+++||++-.=.+++.+..+.+ +|+++|.-
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcC
Confidence 34444555556899988865422 112346889999999999999985447888888876 99999964
No 360
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.55 E-value=2 Score=37.56 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCCChH-----------hHHHhhc--CCEEEEeceEe
Q psy9039 179 AKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGVTSD-----------NVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~-----------~v~~~~~--ADGvIVGS~~~ 244 (251)
++.+...|+|++.++... +.++|+.. +..+.+-.||+++ +..++++ ||++|||..+-
T Consensus 141 a~~a~~~g~dgvv~~~~~---------~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~ 211 (230)
T PRK00230 141 AKLAQEAGLDGVVCSAQE---------AAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPIT 211 (230)
T ss_pred HHHHHHcCCeEEEeChHH---------HHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCccc
Confidence 344444688988666322 34555554 4556777888765 5777775 99999999886
Q ss_pred ec
Q psy9039 245 QG 246 (251)
Q Consensus 245 ~~ 246 (251)
+.
T Consensus 212 ~a 213 (230)
T PRK00230 212 QA 213 (230)
T ss_pred CC
Confidence 54
No 361
>KOG1436|consensus
Probab=84.44 E-value=0.68 Score=42.67 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=51.8
Q ss_pred ccHHHHHHHhhhccccEEEecCC---C------------CCC---CC----CHHHHHHHHhcC--CCCEEEecCC-ChHh
Q psy9039 173 VDITETAKAASFFLSDGLIITGN---A------------TGD---PA----DVSQLMSVKNAV--DLPILIGSGV-TSDN 227 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~---~------------~g~---~~----~~~~l~~vr~~~--~~PV~vG~GI-~~~~ 227 (251)
..+.+++........|++||++. + +|. ++ ..+.++++...+ ++|||==||| +.++
T Consensus 266 ~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~D 345 (398)
T KOG1436|consen 266 KELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKD 345 (398)
T ss_pred HHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHh
Confidence 34555655544468999999884 1 221 11 235566666665 7999999999 6677
Q ss_pred HHHhhc--CCEEEEeceEeecC
Q psy9039 228 VEHYMT--ADALIIGSHFKQGG 247 (251)
Q Consensus 228 v~~~~~--ADGvIVGS~~~~~g 247 (251)
+-+.+. |.-++++|+|..+|
T Consensus 346 A~EkiraGASlvQlyTal~yeG 367 (398)
T KOG1436|consen 346 AYEKIRAGASLVQLYTALVYEG 367 (398)
T ss_pred HHHHHhcCchHHHHHHHHhhcC
Confidence 666664 99999999998887
No 362
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=84.13 E-value=2 Score=39.49 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=49.2
Q ss_pred CCCcCCCCccEEEEeecCC-CCccccC------------CCchHHHHHHHHHHHHHHHhCCCCcc-EEEEEeeCChHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHD-VPYVLEA------------ESGPEITANMTRLCAEIRKVLPPSVP-VGVQILSGCNKAAL 108 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~-~Pf~~p~------------~~gp~i~aa~~~~i~~vr~~~~~~~P-~Gvn~~~N~~~~~~ 108 (251)
+++.++|+ |+|.+.|-.. -+..+.. -.||-+..-..++++++++++...+| +|+=...+. ..++
T Consensus 180 ~~~~~~g~-Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~-~DA~ 257 (310)
T COG0167 180 KAAEEAGA-DGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETG-EDAL 257 (310)
T ss_pred HHHHHcCC-cEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcH-HHHH
Confidence 56789999 9999999332 3321111 15677777778899999988654356 455444432 3444
Q ss_pred HHHHHcCccceecc
Q psy9039 109 ATAQAAGLDFIRAE 122 (251)
Q Consensus 109 ~ia~a~g~~Fir~~ 122 (251)
.. ..+||+.+++.
T Consensus 258 E~-i~aGA~~vQv~ 270 (310)
T COG0167 258 EF-ILAGASAVQVG 270 (310)
T ss_pred HH-HHcCCchheee
Confidence 44 45778888863
No 363
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=84.10 E-value=1.8 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++.|+.+|+.++.|+++. || +++++..+.+ +||++|+
T Consensus 224 ~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 4688999999999999998 58 8999998886 9999986
No 364
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.87 E-value=9.6 Score=34.13 Aligned_cols=174 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCc---------cccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee----
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPY---------VLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS---- 101 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf---------~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~---- 101 (251)
.+.-++-++.|.+.|+ |.|++ |.|- +.. -.+.++++++..++. ++....-.
T Consensus 20 ~~~~~~ia~~L~~~Gv-~~iE~----G~~a~~~~~~~~~~~~----------~~e~i~~~~~~~~~~-~l~~~~r~~~~~ 83 (275)
T cd07937 20 TEDMLPIAEALDEAGF-FSLEV----WGGATFDVCMRFLNED----------PWERLRELRKAMPNT-PLQMLLRGQNLV 83 (275)
T ss_pred HHHHHHHHHHHHHcCC-CEEEc----cCCcchhhhccccCCC----------HHHHHHHHHHhCCCC-ceehhccccccc
Q ss_pred -------CChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCccc
Q psy9039 102 -------GCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVD 174 (251)
Q Consensus 102 -------N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~ 174 (251)
|....-+..+...|.+++|+..... -.....+..++.++.|. .+...+.-..+.. .+...
T Consensus 84 ~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~--------~~~~~~~~i~~ak~~G~---~v~~~i~~~~~~~--~~~~~ 150 (275)
T cd07937 84 GYRHYPDDVVELFVEKAAKNGIDIFRIFDALN--------DVRNLEVAIKAVKKAGK---HVEGAICYTGSPV--HTLEY 150 (275)
T ss_pred CccCCCcHHHHHHHHHHHHcCCCEEEEeecCC--------hHHHHHHHHHHHHHCCC---eEEEEEEecCCCC--CCHHH
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCCCCEEE----ecCCChHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVDLPILI----GSGVTSDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~~PV~v----G~GI~~~~v~~~~~--ADGv 237 (251)
+.+.++.+..+|+|.+.+.=+--...|.. ++++++|+..++|+-+ -+|....|.-..+. |+-+
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHhCCCEE
No 365
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=83.79 E-value=7.7 Score=36.05 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=85.7
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
.-++.++.|.+.|+ |.|-+ -. | ..+ .+..+.+++++++ +|+...+.+|. ..++.. ...|.
T Consensus 37 aTv~QI~~L~~aG~-dIVRv----tv----~---~~e----~A~A~~~Ik~~~~--vPLVaDiHf~~-rla~~~-~~~g~ 96 (361)
T COG0821 37 ATVAQIKALERAGC-DIVRV----TV----P---DME----AAEALKEIKQRLN--VPLVADIHFDY-RLALEA-AECGV 96 (361)
T ss_pred HHHHHHHHHHHcCC-CEEEE----ec----C---CHH----HHHHHHHHHHhCC--CCEEEEeeccH-HHHHHh-hhcCc
Confidence 33444489999999 99964 22 2 222 2345667788878 89999999984 333332 23446
Q ss_pred cceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHHHHhh---hcc
Q psy9039 117 DFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETAKAAS---FFL 186 (251)
Q Consensus 117 ~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a~~a~---~~~ 186 (251)
+=+|.|. | ..+.. ....++.+.+++.+. .+.+ =.++..|++.| |++.-++...+.++ ..+
T Consensus 97 ~k~RINP--G-Nig~~----~~v~~vVe~Ak~~g~-piRIGVN~GSLek~~~~ky~~p--t~ealveSAl~~a~~~e~l~ 166 (361)
T COG0821 97 DKVRINP--G-NIGFK----DRVREVVEAAKDKGI-PIRIGVNAGSLEKRLLEKYGGP--TPEALVESALEHAELLEELG 166 (361)
T ss_pred ceEEECC--c-ccCcH----HHHHHHHHHHHHcCC-CEEEecccCchhHHHHHHhcCC--CHHHHHHHHHHHHHHHHHCC
Confidence 7788751 1 11110 025666777777665 3333 22556676655 33322222223333 123
Q ss_pred ccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 187 SDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
-+-+.+|=.........+..+.+.+.++.|+=+|
T Consensus 167 f~~i~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLG 200 (361)
T COG0821 167 FDDIKVSVKASDVQLMVAAYRLLAKRCDYPLHLG 200 (361)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHhcCCCcccc
Confidence 3455566554433333456667788889888765
No 366
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=83.76 E-value=3.5 Score=36.10 Aligned_cols=70 Identities=26% Similarity=0.262 Sum_probs=52.0
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhh-c-CCEEEEec--eEeecC
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM-T-ADALIIGS--HFKQGG 247 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~-~-ADGvIVGS--~~~~~g 247 (251)
..++..++++|+..|++.+ ....+.++++.+|+.+++|||| +++.|+.+.+.. . ||-+=+|- +|-..|
T Consensus 26 ~~~V~~i~~AA~~ggAt~v-------DIAadp~LV~~~~~~s~lPICV-SaVep~~f~~aV~AGAdliEIGNfDsFY~qG 97 (242)
T PF04481_consen 26 AESVAAIVKAAEIGGATFV-------DIAADPELVKLAKSLSNLPICV-SAVEPELFVAAVKAGADLIEIGNFDSFYAQG 97 (242)
T ss_pred HHHHHHHHHHHHccCCceE-------EecCCHHHHHHHHHhCCCCeEe-ecCCHHHHHHHHHhCCCEEEecchHHHHhcC
Confidence 3567777788877788875 3355788999999999999998 679998866555 4 99998884 344444
Q ss_pred ee
Q psy9039 248 RT 249 (251)
Q Consensus 248 ~~ 249 (251)
+.
T Consensus 98 r~ 99 (242)
T PF04481_consen 98 RR 99 (242)
T ss_pred Ce
Confidence 43
No 367
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=83.72 E-value=14 Score=32.56 Aligned_cols=150 Identities=20% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|...+ . -...++++++... +.-+..+.......+..+...|.+.++..
T Consensus 27 ~~L~~~Gv-~~iE~----g~p~~~~---~------~~e~~~~l~~~~~---~~~~~~~~r~~~~~v~~a~~~g~~~i~i~ 89 (259)
T cd07939 27 RALDEAGV-DEIEV----GIPAMGE---E------EREAIRAIVALGL---PARLIVWCRAVKEDIEAALRCGVTAVHIS 89 (259)
T ss_pred HHHHHcCC-CEEEE----ecCCCCH---H------HHHHHHHHHhcCC---CCEEEEeccCCHHHHHHHHhCCcCEEEEE
Confidence 66889999 99986 7776532 1 1234556655323 12233334333455666677788888863
Q ss_pred cccccccCCC------c----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADE------G----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~------G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ..++. + -......+..++.++.|. .+.+ ....+.. ++...+.+.++.+..+|+|.+.+
T Consensus 90 ~----~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~----~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~l 158 (259)
T cd07939 90 I----PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSV----GAEDASR--ADPDFLIEFAEVAQEAGADRLRF 158 (259)
T ss_pred E----ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEE----eeccCCC--CCHHHHHHHHHHHHHCCCCEEEe
Confidence 1 11110 0 001123345556666664 2322 1111111 22344555555555578888776
Q ss_pred cCCCCCC--CCCH-HHHHHHHhcCCCCEEEecCC
Q psy9039 193 TGNATGD--PADV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 193 TG~~~g~--~~~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
-=+- |. +... +++..+|+..++| +|+-.
T Consensus 159 ~DT~-G~~~P~~v~~lv~~l~~~~~~~--l~~H~ 189 (259)
T cd07939 159 ADTV-GILDPFTTYELIRRLRAATDLP--LEFHA 189 (259)
T ss_pred CCCC-CCCCHHHHHHHHHHHHHhcCCe--EEEEe
Confidence 4331 22 2233 5677888876655 45544
No 368
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=83.62 E-value=1.7 Score=40.94 Aligned_cols=70 Identities=24% Similarity=0.320 Sum_probs=40.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCC------------CCHHHHHHHHhc-------CCCCEEEecCC-ChHhHHHhhc-
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDP------------ADVSQLMSVKNA-------VDLPILIGSGV-TSDNVEHYMT- 233 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~------------~~~~~l~~vr~~-------~~~PV~vG~GI-~~~~v~~~~~- 233 (251)
.+.++..+...++|.+.+.|..-|.. +....+.++.+. -.+.+++.||+ |+.++...+.
T Consensus 216 ~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaL 295 (368)
T PF01645_consen 216 VEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALAL 295 (368)
T ss_dssp HHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHC
T ss_pred HHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhc
Confidence 34444434457999999988754431 111223333322 14899999999 8999888876
Q ss_pred -CCEEEEeceEe
Q psy9039 234 -ADALIIGSHFK 244 (251)
Q Consensus 234 -ADGvIVGS~~~ 244 (251)
||+|-+||+++
T Consensus 296 GAD~v~igt~~l 307 (368)
T PF01645_consen 296 GADAVYIGTAAL 307 (368)
T ss_dssp T-SEEE-SHHHH
T ss_pred CCCeeEecchhh
Confidence 99999998764
No 369
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=83.56 E-value=3.5 Score=37.63 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=42.0
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..+...|+|.+-.-.. +.+.++++.+. .++.+.+.||||.+|++++.. +|.+.+|+-.
T Consensus 218 leea~ea~~~gaDiI~LDn~------s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 218 LDELDQALKAGADIIMLDNF------TTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHHcCCCEEEeCCC------ChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 34445555578898765322 22333332222 257899999999999999997 9999999754
No 370
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=83.52 E-value=7.5 Score=34.43 Aligned_cols=153 Identities=18% Similarity=0.256 Sum_probs=77.2
Q ss_pred CCCcCCCCccEEEEeecCCCC---c--cccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE---eeCChHHHHHHHHHc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVP---Y--VLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI---LSGCNKAALATAQAA 114 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~P---f--~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~---~~N~~~~~~~ia~a~ 114 (251)
+.|.+.|+ |.||+-+-.++. | ..+..+ -...++++++..+. ..+.+++ ..| ...+..+...
T Consensus 29 ~~L~~~Gv-~~iEvg~~~~~~~~~~~~~~~~~~-------~~e~i~~~~~~~~~-~~~~~~~~~~~~~--~~~i~~a~~~ 97 (263)
T cd07943 29 RALDAAGV-PLIEVGHGDGLGGSSLNYGFAAHT-------DEEYLEAAAEALKQ-AKLGVLLLPGIGT--VDDLKMAADL 97 (263)
T ss_pred HHHHHcCC-CEEEeecCCCCCCcccccCCCCCC-------hHHHHHHHHHhccC-CEEEEEecCCccC--HHHHHHHHHc
Confidence 66889999 999874321111 1 011111 12244555554333 3665554 222 4456666777
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
|.+.+|... ...+ .....+..++.+..|. .+.+ .+ ..... .+...+.+.++.+...|+|.+.+-=
T Consensus 98 g~~~iri~~----~~s~----~~~~~~~i~~ak~~G~-~v~~--~~--~~~~~--~~~~~~~~~~~~~~~~G~d~i~l~D 162 (263)
T cd07943 98 GVDVVRVAT----HCTE----ADVSEQHIGAARKLGM-DVVG--FL--MMSHM--ASPEELAEQAKLMESYGADCVYVTD 162 (263)
T ss_pred CCCEEEEEe----chhh----HHHHHHHHHHHHHCCC-eEEE--EE--EeccC--CCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 888888631 1111 1124556666677664 2221 11 11111 2334555555665557899887733
Q ss_pred CCCCC--CCCH-HHHHHHHhcCCCCEEEecCC
Q psy9039 195 NATGD--PADV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 195 ~~~g~--~~~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
+ .|. +... ++++++|+..+. +-+|+=.
T Consensus 163 T-~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~ 192 (263)
T cd07943 163 S-AGAMLPDDVRERVRALREALDP-TPVGFHG 192 (263)
T ss_pred C-CCCcCHHHHHHHHHHHHHhCCC-ceEEEEe
Confidence 2 222 2233 567788887764 3455544
No 371
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=83.51 E-value=5 Score=36.16 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=39.1
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCCC-hHhHH---Hhhc--CCEEEEec
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGVT-SDNVE---HYMT--ADALIIGS 241 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI~-~~~v~---~~~~--ADGvIVGS 241 (251)
++..+.....|+|++.+.|+. |+.. + .+.++.+.+.+ ++||++|-|-+ .+.++ .+.+ ||++.+-.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGT-GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 333333334699999998874 4322 1 23355555554 69999999874 33333 2222 89988754
No 372
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=83.32 E-value=4.6 Score=36.78 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=41.4
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCC------HHHHHHHHhcC--CCCEEEecCC-ChHhHHHh----hc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPAD------VSQLMSVKNAV--DLPILIGSGV-TSDNVEHY----MT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~------~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~----~~--ADGvIV 239 (251)
+.++.+.....|+|++++-|+. |+.+. .+.++.+++.+ .+||++|-|- +.++..++ .+ +||+.+
T Consensus 27 ~~~lv~~li~~Gv~gi~~~Gtt-GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTT-GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILV 105 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCC-ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 3344444444699999998874 44322 23456677766 5999999999 44433322 23 999887
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
-+
T Consensus 106 v~ 107 (299)
T COG0329 106 VP 107 (299)
T ss_pred eC
Confidence 54
No 373
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=83.28 E-value=2.4 Score=37.42 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=48.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC-C-HHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEee
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA-D-VSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFKQ 245 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~-~-~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~~ 245 (251)
...++++.+...|.|++.|-|+. |... . .+.++++|+.+++||++= |.+...+.. ||++.+=|-+--
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~-gvt~~~~~~~v~~ik~~~~lPvilf----P~~~~~is~~aDavff~svLNS 98 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSD-GVTEENVDNVVEAIKERTDLPVILF----PGSPSGISPYADAVFFPSVLNS 98 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcc-cccHHHHHHHHHHHHhhcCCCEEEe----cCChhccCccCCeEEEEEEecC
Confidence 34667777777899999998874 4433 3 367889999999999862 334444445 999999887654
No 374
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.27 E-value=3 Score=37.48 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=45.8
Q ss_pred CCCCcCCCCccEEEEeecCCCCcccc------------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHH
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLE------------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALA 109 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p------------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ 109 (251)
++.++++|+ |+|.+.|-..-+..+. .-.||.+.....+.++++++.++ +|+..+.=..++ ....
T Consensus 172 a~~~~~~G~-d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~--ipii~~GGI~~~-~da~ 247 (296)
T cd04740 172 ARAAEEAGA-DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE--IPIIGVGGIASG-EDAL 247 (296)
T ss_pred HHHHHHcCC-CEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC--CCEEEECCCCCH-HHHH
Confidence 355788999 9999887542111010 01233333334567788888887 797777655442 3333
Q ss_pred HHHHcCccceecc
Q psy9039 110 TAQAAGLDFIRAE 122 (251)
Q Consensus 110 ia~a~g~~Fir~~ 122 (251)
-+...|++++..+
T Consensus 248 ~~l~~GAd~V~ig 260 (296)
T cd04740 248 EFLMAGASAVQVG 260 (296)
T ss_pred HHHHcCCCEEEEc
Confidence 3345788888863
No 375
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.23 E-value=4.1 Score=36.93 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..+...|+|.+-.-.. +.+.+++..+.. ...+.+.||||.+|++++.. .|.+.+|+-.
T Consensus 203 lee~~ea~~~gaDiImLDn~------s~e~l~~av~~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 203 LDQIEPVLAAGVDTIMLDNF------SLDDLREGVELVDGRAIVEASGNVNLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred HHHHHHHHhcCCCEEEECCC------CHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 33445555678999766322 233344332221 35799999999999999996 9999999743
No 376
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.17 E-value=4.2 Score=37.12 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=42.3
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.+.+..|...|+|.+-.-.. +.+.+++..+.. .+.+-+.||||.+|++++.. .|.+.+|+-.
T Consensus 215 leea~eA~~aGaDiImLDnm------spe~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNF------TLDMMREAVRVTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred HHHHHHHHHcCCCEEEECCC------CHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 33455665678999866322 233333322222 46789999999999999997 9999999743
No 377
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=82.93 E-value=11 Score=33.00 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCc
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGL 116 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~ 116 (251)
-.++++..-++-|+ |+++|.= |+|| .+..+|+... +| +.... .+++-.|...|.
T Consensus 57 ~~l~ei~~~~~~Gv-daiiIaC-----f~DP-------------gl~~~Re~~~--~P--viGi~---eAsv~~A~~vgr 110 (230)
T COG4126 57 GLLREIADGEEQGV-DAIIIAC-----FSDP-------------GLAAARERAA--IP--VIGIC---EASVLAALFVGR 110 (230)
T ss_pred HHHHHhhcccccCC-cEEEEEe-----cCCh-------------HHHHHHHHhC--CC--ceehh---HHHHHHHHHhcc
Confidence 34566677778899 9999844 5555 1345666666 67 22221 556677766777
Q ss_pred ccee
Q psy9039 117 DFIR 120 (251)
Q Consensus 117 ~Fir 120 (251)
+|--
T Consensus 111 rfsV 114 (230)
T COG4126 111 RFSV 114 (230)
T ss_pred eEEE
Confidence 7733
No 378
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=82.79 E-value=3.8 Score=35.09 Aligned_cols=131 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCCCc-chHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEe
Q psy9039 22 ESGPEIT-ANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQIL 100 (251)
Q Consensus 22 pG~P~~~-~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~ 100 (251)
|+++-|= -+++++ +.|.+.|+ |.|-+ |--... -| ..+..+++++|+... .+|-=
T Consensus 44 ~~~~V~ITPT~~ev--------~~l~~aGa-dIIAl----DaT~R~----Rp---~~l~~li~~i~~~~~-----l~MAD 98 (192)
T PF04131_consen 44 PDSDVYITPTLKEV--------DALAEAGA-DIIAL----DATDRP----RP---ETLEELIREIKEKYQ-----LVMAD 98 (192)
T ss_dssp TTSS--BS-SHHHH--------HHHHHCT--SEEEE----E-SSSS-----S---S-HHHHHHHHHHCTS-----EEEEE
T ss_pred CCCCeEECCCHHHH--------HHHHHcCC-CEEEE----ecCCCC----CC---cCHHHHHHHHHHhCc-----EEeee
Confidence 3444443 389999 88999999 99975 443322 23 448889999998641 24432
Q ss_pred eCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHH
Q psy9039 101 SGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAK 180 (251)
Q Consensus 101 ~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~ 180 (251)
... .+.--.|...|.+|+.. .++|..-.-.+ -.||.+.+.+.++. .++++++ | .-...+.++
T Consensus 99 ist-~ee~~~A~~~G~D~I~T-TLsGYT~~t~~-~~pD~~lv~~l~~~----~~pvIaE-----G------ri~tpe~a~ 160 (192)
T PF04131_consen 99 IST-LEEAINAAELGFDIIGT-TLSGYTPYTKG-DGPDFELVRELVQA----DVPVIAE-----G------RIHTPEQAA 160 (192)
T ss_dssp -SS-HHHHHHHHHTT-SEEE--TTTTSSTTSTT-SSHHHHHHHHHHHT----TSEEEEE-----S------S--SHHHHH
T ss_pred cCC-HHHHHHHHHcCCCEEEc-ccccCCCCCCC-CCCCHHHHHHHHhC----CCcEeec-----C------CCCCHHHHH
Confidence 222 34444456688999885 34453222333 44554444443332 3344431 1 112234455
Q ss_pred HhhhccccEEEecCC
Q psy9039 181 AASFFLSDGLIITGN 195 (251)
Q Consensus 181 ~a~~~~~D~v~VTG~ 195 (251)
.+-..|+++++|-+.
T Consensus 161 ~al~~GA~aVVVGsA 175 (192)
T PF04131_consen 161 KALELGAHAVVVGSA 175 (192)
T ss_dssp HHHHTT-SEEEE-HH
T ss_pred HHHhcCCeEEEECcc
Confidence 555578888877443
No 379
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=82.76 E-value=12 Score=34.83 Aligned_cols=155 Identities=16% Similarity=0.150 Sum_probs=89.5
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
++..+++++.|+++|+ |.|-+ -+ .+ .. .+..++++++.++ +|+...+.+|. ..++. |.+.
T Consensus 33 v~atv~QI~~L~~aGc-eiVRv----av--p~-----~~----~A~al~~I~~~~~--iPlVADIHFd~-~lAl~-a~~~ 92 (346)
T TIGR00612 33 IDSTVAQIRALEEAGC-DIVRV----TV--PD-----RE----SAAAFEAIKEGTN--VPLVADIHFDY-RLAAL-AMAK 92 (346)
T ss_pred HHHHHHHHHHHHHcCC-CEEEE----cC--CC-----HH----HHHhHHHHHhCCC--CCEEEeeCCCc-HHHHH-HHHh
Confidence 3455555599999999 99964 22 22 11 3456778888888 89999999975 33322 3456
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHH-HHhh---
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETA-KAAS--- 183 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a-~~a~--- 183 (251)
|++=+|.|. | ..+. .....++.+.+++.+. .|.+ =.++..|+|.+ ++ +.+.+.| +..+
T Consensus 93 g~dkiRINP--G-Nig~----~e~v~~vv~~ak~~~i-pIRIGVN~GSL~~~~~~kyg~~--t~-eamveSAl~~v~~le 161 (346)
T TIGR00612 93 GVAKVRINP--G-NIGF----RERVRDVVEKARDHGK-AMRIGVNHGSLERRLLEKYGDA--TA-EAMVQSALEEAAILE 161 (346)
T ss_pred ccCeEEECC--C-CCCC----HHHHHHHHHHHHHCCC-CEEEecCCCCCcHHHHHHcCCC--CH-HHHHHHHHHHHHHHH
Confidence 788899761 1 1111 1125556666666664 2322 12556676644 22 2233333 2222
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
..+=+=+++|=..+......+..+.+.+.++.|+=+|
T Consensus 162 ~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHlG 198 (346)
T TIGR00612 162 KLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHLG 198 (346)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCceec
Confidence 2344455666555544444566667777789998775
No 380
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.45 E-value=31 Score=31.34 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=42.1
Q ss_pred hhccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |+..|. .+ +.++|+++++.+++|+++ |+|+..++++++.+ .-=+=++|.+
T Consensus 165 ~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l 235 (284)
T PRK12737 165 ERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVATEL 235 (284)
T ss_pred HHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHH
Confidence 34589999764 544343 23 468899999999999988 55566788988774 4444455544
No 381
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=82.31 E-value=2.1 Score=37.68 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=41.4
Q ss_pred hhccccEEEecCCCCCCCC-CH-HHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceEe
Q psy9039 183 SFFLSDGLIITGNATGDPA-DV-SQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHFK 244 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~~~-~~-~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~~ 244 (251)
...|.|++.|-|+. |... .+ +.++++|+ +++||++ | |.+...+.. ||++.+=|-+-
T Consensus 29 ~~~gtdai~vGGS~-~vt~~~~~~~v~~ik~-~~lPvil-f---p~~~~~i~~~aDa~l~~svlN 87 (232)
T PRK04169 29 CESGTDAIIVGGSD-GVTEENVDELVKAIKE-YDLPVIL-F---PGNIEGISPGADAYLFPSVLN 87 (232)
T ss_pred HhcCCCEEEEcCCC-ccchHHHHHHHHHHhc-CCCCEEE-e---CCCccccCcCCCEEEEEEEec
Confidence 34699999998885 3333 33 56889999 8999998 5 556666666 99999877653
No 382
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=81.92 E-value=2.2 Score=39.83 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=44.8
Q ss_pred HHHHHHHhhhccccEEEecC-C-----CCCCCCCH----HHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITG-N-----ATGDPADV----SQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG-~-----~~g~~~~~----~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvIV 239 (251)
.+++.+..+...+|++-+-= . ..+...+. +.++.+++.+++||++ |+|.+.+.+..+.+ +|++.|
T Consensus 137 ~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 137 VEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDV 216 (352)
T ss_pred HHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEE
Confidence 44444444555677775421 1 11112233 5688888888999997 99999888888875 999999
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
+.
T Consensus 217 sg 218 (352)
T PRK05437 217 AG 218 (352)
T ss_pred CC
Confidence 55
No 383
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=81.85 E-value=18 Score=31.19 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee--------CC--hHHH-HHH
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS--------GC--NKAA-LAT 110 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~--------N~--~~~~-~~i 110 (251)
+...+.|+ |++.++ |+.+.+ .....+.+.++.+..+ ... +|+.++.++ .. .+.. ...
T Consensus 83 ~~a~~~Ga-~~v~~~~~~~~~~-------~~~~~~~i~~v~~~~~-~~g--~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 83 EDAVRLGA-DAVGVTVYVGSEE-------EREMLEELARVAAEAH-KYG--LPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred HHHHHCCC-CEEEEEEecCCch-------HHHHHHHHHHHHHHHH-HcC--CCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 45668899 988654 433221 1122223333333333 345 799998876 11 1222 444
Q ss_pred HHHcCccceec
Q psy9039 111 AQAAGLDFIRA 121 (251)
Q Consensus 111 a~a~g~~Fir~ 121 (251)
|...|++|+..
T Consensus 152 a~~~GaD~Ik~ 162 (235)
T cd00958 152 GAELGADIVKT 162 (235)
T ss_pred HHHHCCCEEEe
Confidence 66688999886
No 384
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=81.80 E-value=3.1 Score=40.49 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=42.8
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHhhc-CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHYMT-ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~~~-ADGvIVGS 241 (251)
+.+++.+.......|.+++|..........+.++.+|+.. ++||++||.- | ++++-+-.. +|.++.|-
T Consensus 51 ~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GE 123 (497)
T TIGR02026 51 TDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGE 123 (497)
T ss_pred CHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCC
Confidence 3444444444457999999976432222235566778764 7899988876 4 555543334 89998883
No 385
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.65 E-value=3.8 Score=37.96 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=39.7
Q ss_pred cccEEEecCCCCCCCC-CHHHHHHHHhcCC-CCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 186 LSDGLIITGNATGDPA-DVSQLMSVKNAVD-LPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~-~~~~l~~vr~~~~-~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
++|++.+--++ +... -.+.++++|+..+ +||++| -| |.+.+..+.+ +|++.||
T Consensus 111 ~~d~i~iD~a~-gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 111 TPEYITIDIAH-GHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred CCCEEEEECCC-CchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEEEC
Confidence 46999996665 3333 3477999999885 776665 35 8899988886 9999888
No 386
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=81.62 E-value=18 Score=32.19 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=70.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |-|++ |.|-. .|.- ...++.+.+.... ..+ .. ....+...+..|...|.+.++..
T Consensus 29 ~~L~~~Gv-~~IEv----G~P~~-----~~~~----~~~~~~l~~~~~~-~~v-~~-~~r~~~~di~~a~~~g~~~i~i~ 91 (262)
T cd07948 29 KALDAFGV-DYIEL----TSPAA-----SPQS----RADCEAIAKLGLK-AKI-LT-HIRCHMDDARIAVETGVDGVDLV 91 (262)
T ss_pred HHHHHcCC-CEEEE----ECCCC-----CHHH----HHHHHHHHhCCCC-CcE-EE-EecCCHHHHHHHHHcCcCEEEEE
Confidence 66899999 99986 55543 3333 3333334332221 122 22 22333556777777888887752
Q ss_pred cccccccCC------Cc----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMAD------EG----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~------~G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. .+++ .+ -......+..++.+..|. .+.+ .+..-.+ ++...+.+.++.+...|+|.+++
T Consensus 92 ~----~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~--~~eda~r----~~~~~l~~~~~~~~~~g~~~i~l 160 (262)
T cd07948 92 F----GTSPFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRF--SSEDSFR----SDLVDLLRVYRAVDKLGVNRVGI 160 (262)
T ss_pred E----ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEE--EEEeeCC----CCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 1110 00 001113333445555443 1211 1110111 22344555555555568888776
Q ss_pred cCCCCCC--CCCH-HHHHHHHhcCCCCE
Q psy9039 193 TGNATGD--PADV-SQLMSVKNAVDLPI 217 (251)
Q Consensus 193 TG~~~g~--~~~~-~~l~~vr~~~~~PV 217 (251)
-=+- |. +... +++..+|+..++|+
T Consensus 161 ~Dt~-G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 161 ADTV-GIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred CCcC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence 4332 22 2233 56778888777665
No 387
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=81.40 E-value=3.1 Score=31.79 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=43.7
Q ss_pred ccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-C--hHhHHHhhc-CCEEEEec
Q psy9039 173 VDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGV-T--SDNVEHYMT-ADALIIGS 241 (251)
Q Consensus 173 ~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~--~~~v~~~~~-ADGvIVGS 241 (251)
.+..++.+.......|.+++|...+......+.+.++|+.. ++|+++||-. + ++. . .|-+++|-
T Consensus 37 ~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~-----~~~d~~~~Ge 106 (125)
T cd02065 37 VPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEE-----PKVDAVVIGE 106 (125)
T ss_pred CCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccc-----cccceeeeCC
Confidence 34455555545568999999987665444456666776655 6999999977 4 343 4 78888873
No 388
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=81.07 E-value=17 Score=33.01 Aligned_cols=64 Identities=13% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHhh-h--ccccEEEecCCCCCCCCCHHHHHHHHhcCC--CCEEEecCC----ChHhHHHhhcCCEEEEeceE
Q psy9039 176 TETAKAAS-F--FLSDGLIITGNATGDPADVSQLMSVKNAVD--LPILIGSGV----TSDNVEHYMTADALIIGSHF 243 (251)
Q Consensus 176 ~~~a~~a~-~--~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~--~PV~vG~GI----~~~~v~~~~~ADGvIVGS~~ 243 (251)
++..+.+. + .|+|++.|.|. ..+.+.++++.+.++ +|+++-.|- +.++..++-...-++.|+..
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~~----~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~ 238 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHSR----QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHA 238 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHH
Confidence 44455554 3 59999999862 134677888777765 588653332 44556655324557777543
No 389
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=80.96 E-value=2.5 Score=35.57 Aligned_cols=96 Identities=14% Similarity=0.310 Sum_probs=59.1
Q ss_pred ccCCCceeecCcchhHHHHHhcCCC---cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHH
Q psy9039 128 HMADEGLMNAQAGPLLRYRKQIGAD---NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVS 204 (251)
Q Consensus 128 ~~~~~Gli~~da~e~~~~r~~l~~~---~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~ 204 (251)
...++|+|.....-+ ...++++.. .++++. ...++...+......+|++-|- .| --..
T Consensus 74 ~~~pdGIISTk~~~i-~~Akk~~~~aIqR~FilD-------------S~Al~~~~~~i~~~~pD~iEvL---PG--v~Pk 134 (181)
T COG1954 74 VIKPDGIISTKSNVI-KKAKKLGILAIQRLFILD-------------SIALEKGIKQIEKSEPDFIEVL---PG--VMPK 134 (181)
T ss_pred hccCCeeEEccHHHH-HHHHHcCCceeeeeeeec-------------HHHHHHHHHHHHHcCCCEEEEc---Cc--ccHH
Confidence 355778887764443 444455542 222221 1222333233333578887552 12 1247
Q ss_pred HHHHHHhcCCCCEEEecCC-ChHhHHHhhcCCEEEEece
Q psy9039 205 QLMSVKNAVDLPILIGSGV-TSDNVEHYMTADALIIGSH 242 (251)
Q Consensus 205 ~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~ADGvIVGS~ 242 (251)
.++++.+.++.||++||=| |.|++.++++|=++.|.|+
T Consensus 135 vi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 135 VIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeec
Confidence 7889999999999999988 7899999998666666654
No 390
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=80.92 E-value=35 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=41.0
Q ss_pred hccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-|+|++-|+ |...|. .+ +.++|+++++.+++|+++ |+|++.+++++... .-=+=++|.|
T Consensus 164 ~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 233 (282)
T TIGR01858 164 ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVATEL 233 (282)
T ss_pred HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3589999664 554443 22 468899999999999988 55566788888764 4444445544
No 391
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.73 E-value=23 Score=32.05 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+.-++=++.|.+.|+ |-|++-++.. |---|...+. ...++++++... ..+...+ .| ...+..|...
T Consensus 25 ~e~k~~ia~~L~~~Gv-~~IEvgsf~~-p~~~p~~~d~------~e~~~~l~~~~~--~~~~~l~-~~--~~~ie~A~~~ 91 (287)
T PRK05692 25 TADKIALIDRLSAAGL-SYIEVASFVS-PKWVPQMADA------AEVMAGIQRRPG--VTYAALT-PN--LKGLEAALAA 91 (287)
T ss_pred HHHHHHHHHHHHHcCC-CEEEeCCCcC-cccccccccH------HHHHHhhhccCC--CeEEEEe-cC--HHHHHHHHHc
Q ss_pred CccceecccccccccCCCceeecCcchhHHHHHhcCCCc----chhhhhhHhhccCCC--------------CCCcccHH
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN----VLVFTDIKKKHSSHA--------------ITADVDIT 176 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~----i~i~a~v~~k~~~~~--------------~~~~~~i~ 176 (251)
|.+.++. ..+-.+...+..-....+. +.-.-...+++|..+ .++...+.
T Consensus 92 g~~~v~i-------------~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~ 158 (287)
T PRK05692 92 GADEVAV-------------FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVA 158 (287)
T ss_pred CCCEEEE-------------EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHH
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCC-CCEEE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVD-LPILI 219 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~-~PV~v 219 (251)
+.++.+...|+|.+.+.=+---..|.. ++++++|+..+ +|+-+
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~ 204 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAG 204 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEE
No 392
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=80.58 E-value=2.1 Score=39.81 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCEEE-ecCCChHhHHH----hhc--C--CEEEEeceEeecC
Q psy9039 204 SQLMSVKNAVDLPILI-GSGVTSDNVEH----YMT--A--DALIIGSHFKQGG 247 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~v-G~GI~~~~v~~----~~~--A--DGvIVGS~~~~~g 247 (251)
+.++++.+.+++|+++ |+|.+.+.+.+ .+. | .|+.+|-++-+++
T Consensus 231 ~~f~~~~~a~~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 231 KLFREQSDATDLPFIFLSAGVSPELFRRTLEFACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHHHHcCCCccchhhhHHHHhhh
Confidence 4567777778899888 88887655443 333 7 8999997665443
No 393
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=80.49 E-value=4.5 Score=36.10 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh----HHHHHHHHHcCcc
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN----KAALATAQAAGLD 117 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~----~~~~~ia~a~g~~ 117 (251)
++.+.+.|+ |+|+| | ++-|.......--...+.+.++++++|+.++ +|+.+=+-.+.. ......+...|++
T Consensus 117 a~~~~~~G~-d~iel-N-~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~--~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 117 ARKIERAGA-KALEL-N-LSCPNVGGGRQLGQDPEAVANLLKAVKAAVD--IPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHhCC-CEEEE-E-cCCCCCCCCcccccCHHHHHHHHHHHHHccC--CCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 345567799 99987 3 3455543211101123456778899998876 788775433321 2223344557888
Q ss_pred ceecc
Q psy9039 118 FIRAE 122 (251)
Q Consensus 118 Fir~~ 122 (251)
|+...
T Consensus 192 ~i~~~ 196 (289)
T cd02810 192 GLTAI 196 (289)
T ss_pred EEEEE
Confidence 88863
No 394
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=80.32 E-value=7.6 Score=35.25 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=35.7
Q ss_pred hccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCCCh-HhHH---Hhhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGVTS-DNVE---HYMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI~~-~~v~---~~~~--ADGvIVGS 241 (251)
..|+|++++-|+. |+.. + .+.++.+++.+ ++||++|-|-+. +.++ .+.+ ||++.+-.
T Consensus 39 ~~Gv~Gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 39 PYGAAALFAAGGT-GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 3699999998874 4322 1 23355555554 599999998743 3333 2223 99998754
No 395
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=80.23 E-value=4.3 Score=35.07 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
.+..++=++.|.+.|+ |.|++ |+|+. ++.-...+.++.+.+.+ .. +......-..+....+..+...
T Consensus 13 ~~~k~~i~~~L~~~Gv-~~iEv----g~~~~-----~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 13 TEEKLEIAKALDEAGV-DYIEV----GFPFA-----SEDDFEQVRRLREALPN-AR--LQALCRANEEDIERAVEAAKEA 79 (237)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE----EHCTS-----SHHHHHHHHHHHHHHHS-SE--EEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCC-CEEEE----ccccc-----CHHHHHHhhhhhhhhcc-cc--cceeeeehHHHHHHHHHhhHhc
Q ss_pred CccceecccccccccCCCceeecCcc-------------------hhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccH
Q psy9039 115 GLDFIRAESFVFGHMADEGLMNAQAG-------------------PLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDI 175 (251)
Q Consensus 115 g~~Fir~~~~~~~~~~~~Gli~~da~-------------------e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i 175 (251)
|.++++. ..+-.+ +..++.+..+. .+ .+...+... ++...+
T Consensus 80 g~~~i~i-------------~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v----~~~~~~~~~--~~~~~~ 139 (237)
T PF00682_consen 80 GIDIIRI-------------FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY-EV----AFGCEDASR--TDPEEL 139 (237)
T ss_dssp TSSEEEE-------------EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EE----EEEETTTGG--SSHHHH
T ss_pred cCCEEEe-------------cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ce----EeCcccccc--ccHHHH
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCC-CCE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVD-LPI 217 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~-~PV 217 (251)
.+.++.+..+|+|.+.+--+--...|.. ++++.+|+..+ +|+
T Consensus 140 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l 184 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPL 184 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeE
No 396
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.20 E-value=5 Score=36.44 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=46.5
Q ss_pred hhhccccEEEec-CCCCCCC--C--CHHHHHHHHhcCCCCEEEec--CCChHhHHHhhc--CCEEEEeceEee
Q psy9039 182 ASFFLSDGLIIT-GNATGDP--A--DVSQLMSVKNAVDLPILIGS--GVTSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 182 a~~~~~D~v~VT-G~~~g~~--~--~~~~l~~vr~~~~~PV~vG~--GI~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
.+.-|+|.+-|+ |...|.. + +.+.++++++.+++|+++=| |++.+++++..+ .-.+=|||.++.
T Consensus 162 v~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 162 VERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred HHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHH
Confidence 333589998664 4433332 3 46889999999999999855 456788998885 888888887653
No 397
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=79.88 E-value=2.9 Score=38.65 Aligned_cols=39 Identities=10% Similarity=0.388 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCEEE---ecCCChHhHHHhhc--CCEEEEece
Q psy9039 204 SQLMSVKNAVDLPILI---GSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 204 ~~l~~vr~~~~~PV~v---G~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
+.++.+++.+++||++ |+|.+.+.+..+.+ +|++.|+.+
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~ 212 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGA 212 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 6688899988999998 99988888887775 999999763
No 398
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=79.83 E-value=12 Score=33.98 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=72.3
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
..|++.|++.|+ |.|- |.+- .. | .....+..|+.+. +||..-+ .|. ...--+...|++|
T Consensus 79 ~~Ea~~L~~~Gv-DiID-eTe~----lr-----P-----ade~~~~~K~~f~--vpfmad~-~~l--~EAlrai~~Gadm 137 (287)
T TIGR00343 79 FVEAQILEALGV-DYID-ESEV----LT-----P-----ADWTFHIDKKKFK--VPFVCGA-RDL--GEALRRINEGAAM 137 (287)
T ss_pred HHHHHHHHHcCC-CEEE-ccCC----CC-----c-----HHHHHHHHHHHcC--CCEEccC-CCH--HHHHHHHHCCCCE
Confidence 567789999999 9992 1111 11 2 3566777888776 6764442 232 2222234688999
Q ss_pred eecccccccccCC---------------Ccee-ecCcchhHHHHHhcCCCcchhhhhhHhhccCCCC---CCcccHHHHH
Q psy9039 119 IRAESFVFGHMAD---------------EGLM-NAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAI---TADVDITETA 179 (251)
Q Consensus 119 ir~~~~~~~~~~~---------------~Gli-~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~---~~~~~i~~~a 179 (251)
+|..-..+ -++ .++- ..+.+|+..+.+.++ .+..++..+.....+|+. .......+-+
T Consensus 138 I~Tt~e~g--Tg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~elLkei~~~~~iPVV~fAiGGI~TPedA 214 (287)
T TIGR00343 138 IRTKGEAG--TGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELR-VPVELLLEVLKLGKLPVVNFAAGGVATPADA 214 (287)
T ss_pred EeccccCC--CccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccC-CCHHHHHHHHHhCCCCEEEeccCCCCCHHHH
Confidence 99641111 111 0000 001235556666666 377777777655456652 2333223334
Q ss_pred HHhhhccccEEEecCC
Q psy9039 180 KAASFFLSDGLIITGN 195 (251)
Q Consensus 180 ~~a~~~~~D~v~VTG~ 195 (251)
..+...|+|++.|.+.
T Consensus 215 a~~melGAdGVaVGSa 230 (287)
T TIGR00343 215 ALMMQLGADGVFVGSG 230 (287)
T ss_pred HHHHHcCCCEEEEhHH
Confidence 4444579999987654
No 399
>KOG0623|consensus
Probab=79.79 E-value=2.8 Score=39.14 Aligned_cols=43 Identities=33% Similarity=0.543 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc---CCEEEEeceE
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT---ADALIIGSHF 243 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~---ADGvIVGS~~ 243 (251)
-++++++-+|..+.+||++.+|- +|++..+++. ||++.-..-|
T Consensus 472 yDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaAGiF 518 (541)
T KOG0623|consen 472 YDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAAGIF 518 (541)
T ss_pred cchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhccce
Confidence 36889999999999999999999 8999999984 8877544444
No 400
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=79.55 E-value=20 Score=33.68 Aligned_cols=146 Identities=21% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|...+ .+ ...++++++... ..-+..+.-.....+..+...|.+.++..
T Consensus 33 ~~L~~~GV-~~IE~----G~p~~~~---~~------~e~i~~i~~~~~---~~~i~~~~r~~~~di~~a~~~g~~~i~i~ 95 (378)
T PRK11858 33 RMLDEIGV-DQIEA----GFPAVSE---DE------KEAIKAIAKLGL---NASILALNRAVKSDIDASIDCGVDAVHIF 95 (378)
T ss_pred HHHHHhCC-CEEEE----eCCCcCh---HH------HHHHHHHHhcCC---CeEEEEEcccCHHHHHHHHhCCcCEEEEE
Confidence 66889999 99975 8887654 11 223445544322 22233322111344556666777777752
Q ss_pred cccccccCCC------c----eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe
Q psy9039 123 SFVFGHMADE------G----LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII 192 (251)
Q Consensus 123 ~~~~~~~~~~------G----li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V 192 (251)
. ..++. + -......+..++.+..|. .+.+- ...+.. ++...+.+.++.+...|+|.+.+
T Consensus 96 ~----~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~-~v~~~----~ed~~r--~~~~~l~~~~~~~~~~Ga~~I~l 164 (378)
T PRK11858 96 I----ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL-YVSFS----AEDASR--TDLDFLIEFAKAAEEAGADRVRF 164 (378)
T ss_pred E----cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEE----eccCCC--CCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 11110 0 001124445566666664 23321 111111 23455566666666678888877
Q ss_pred cCCCCCCC-C-CH-HHHHHHHhcCCCCE
Q psy9039 193 TGNATGDP-A-DV-SQLMSVKNAVDLPI 217 (251)
Q Consensus 193 TG~~~g~~-~-~~-~~l~~vr~~~~~PV 217 (251)
--+- |.. | .. ++++.+++..++|+
T Consensus 165 ~DT~-G~~~P~~v~~lv~~l~~~~~~~l 191 (378)
T PRK11858 165 CDTV-GILDPFTMYELVKELVEAVDIPI 191 (378)
T ss_pred eccC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence 4332 222 2 23 56778888776653
No 401
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.14 E-value=7.8 Score=35.34 Aligned_cols=66 Identities=18% Similarity=0.364 Sum_probs=39.8
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-ChHh-HH---Hhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TSDN-VE---HYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~~~-v~---~~~~--ADGvIV 239 (251)
+++..+.....|++++++-|+. |+.. +. +.++.+++.+ ++||++|-|- +.++ ++ .+.+ ||++.|
T Consensus 31 l~~lv~~li~~Gv~Gi~v~Gst-GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTF-GECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHHcCCCEEEECccc-ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3344444334699999998874 4422 11 3344555554 5999999996 5433 33 2223 999988
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
-+
T Consensus 110 ~~ 111 (309)
T cd00952 110 GR 111 (309)
T ss_pred CC
Confidence 64
No 402
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.14 E-value=29 Score=31.39 Aligned_cols=60 Identities=20% Similarity=0.453 Sum_probs=39.5
Q ss_pred hccccEEEec-CCCCCC----CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD----PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~----~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-++|.+-|+ |...|. .+ +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=++|.+
T Consensus 159 ~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 229 (276)
T cd00947 159 ETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDL 229 (276)
T ss_pred HHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence 3589999764 433232 22 468899999999999998 45556788888764 4333344443
No 403
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.03 E-value=12 Score=37.48 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCC------CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee-------
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHD------VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS------- 101 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~------~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~------- 101 (251)
.+.-++=+..|.+.|+ +.|++ -+| +||.... =-..++++|+..+.. |+...+ +
T Consensus 26 ~~d~l~ia~~ld~~G~-~siE~--~GGatf~~~~~~~~e~---------p~e~lr~l~~~~~~~-~lqml~-Rg~n~vg~ 91 (593)
T PRK14040 26 LDDMLPIAAKLDKVGY-WSLES--WGGATFDACIRFLGED---------PWERLRELKKAMPNT-PQQMLL-RGQNLLGY 91 (593)
T ss_pred HHHHHHHHHHHHHcCC-CEEEe--cCCcchhhhccccCCC---------HHHHHHHHHHhCCCC-eEEEEe-cCcceecc
Q ss_pred -----CChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhh-hHhhccCCCCCCcccH
Q psy9039 102 -----GCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTD-IKKKHSSHAITADVDI 175 (251)
Q Consensus 102 -----N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~-v~~k~~~~~~~~~~~i 175 (251)
|.-..-+..|...|.+.+|+..... .........++.++.|....--++. ..++| +....
T Consensus 92 ~~ypddvv~~~v~~a~~~Gid~~rifd~ln--------d~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~------~~~~~ 157 (593)
T PRK14040 92 RHYADDVVERFVERAVKNGMDVFRVFDAMN--------DPRNLETALKAVRKVGAHAQGTLSYTTSPVH------TLQTW 157 (593)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEeeeCC--------cHHHHHHHHHHHHHcCCeEEEEEEEeeCCcc------CHHHH
Q ss_pred HHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCCCCE
Q psy9039 176 TETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVDLPI 217 (251)
Q Consensus 176 ~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~~PV 217 (251)
.+.++.+...|+|.+++.=+.-...|.. ++++++|+..++||
T Consensus 158 ~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi 201 (593)
T PRK14040 158 VDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPL 201 (593)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeE
No 404
>PLN02826 dihydroorotate dehydrogenase
Probab=78.91 E-value=4.2 Score=38.81 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=55.2
Q ss_pred cccccccCCCCCCCcc-hHHHHHHHHHhhCCCCcCCCCccEEEEeecC-CC-------Cccc--cCCCchHHHHHHHHHH
Q psy9039 14 DVPYVLEAESGPEITA-NMTRLCAEIRKVLPPSVPVGVQHGVIVENMH-DV-------PYVL--EAESGPEITANMTRLC 82 (251)
Q Consensus 14 ~~p~~~~~pG~P~~~~-~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~-~~-------Pf~~--p~~~gp~i~aa~~~~i 82 (251)
.+|.+.- .+|+... .++.+. +.+.+.|+ |||++.|-. +. |... .--.|+-+.....+++
T Consensus 262 ~~Pv~vK--laPdl~~~di~~ia-------~~a~~~G~-dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v 331 (409)
T PLN02826 262 PPPLLVK--IAPDLSKEDLEDIA-------AVALALGI-DGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVL 331 (409)
T ss_pred CCceEEe--cCCCCCHHHHHHHH-------HHHHHcCC-CEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHH
Confidence 3666665 5676653 344442 44568999 999999932 22 2211 0114555555566788
Q ss_pred HHHHHhCCCCccE-EEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 83 AEIRKVLPPSVPV-GVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 83 ~~vr~~~~~~~P~-Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+++++.++..+|+ |+=...+. ..++.. ...||+.+++.
T Consensus 332 ~~l~~~~~~~ipIIgvGGI~sg-~Da~e~-i~AGAs~VQv~ 370 (409)
T PLN02826 332 REMYRLTRGKIPLVGCGGVSSG-EDAYKK-IRAGASLVQLY 370 (409)
T ss_pred HHHHHHhCCCCcEEEECCCCCH-HHHHHH-HHhCCCeeeec
Confidence 8888877422464 33333332 333333 45788998863
No 405
>PRK08227 autoinducer 2 aldolase; Validated
Probab=78.82 E-value=6.2 Score=35.45 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=67.5
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccc
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLS 187 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~ 187 (251)
..-|...|++-+-...+.|.. .+.-...+..++.+.++++|.+-+. +.++ |-....+..-+...++-+..-|+
T Consensus 100 VeeAvrlGAdAV~~~v~~Gs~--~E~~~l~~l~~v~~ea~~~G~Plla----~~pr-G~~~~~~~~~ia~aaRiaaELGA 172 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFIGSE--YEHQSIKNIIQLVDAGLRYGMPVMA----VTAV-GKDMVRDARYFSLATRIAAEMGA 172 (264)
T ss_pred HHHHHHCCCCEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEE----EecC-CCCcCchHHHHHHHHHHHHHHcC
Confidence 444555667766655444411 1112223466677778888774333 2233 21110111122222333334699
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCC--hHh----HHHhhc--CCEEEEeceEee
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVT--SDN----VEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~--~~~----v~~~~~--ADGvIVGS~~~~ 245 (251)
|.+=+. .+ . +.++++.+.+.+||++.||=+ .+. +.+.++ |.|+.+|--+-+
T Consensus 173 DiVK~~-----y~-~-~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 173 QIIKTY-----YV-E-EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred CEEecC-----CC-H-HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 997442 21 1 567888888999999999984 332 344454 999999965433
No 406
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=78.72 E-value=3.1 Score=39.09 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=46.7
Q ss_pred hccccEEEecCCCC----CCCCCHHHHHHHHhcCC--CCEEEecCC-ChHhHHHhhc--CCEEEEeceEe
Q psy9039 184 FFLSDGLIITGNAT----GDPADVSQLMSVKNAVD--LPILIGSGV-TSDNVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 184 ~~~~D~v~VTG~~~----g~~~~~~~l~~vr~~~~--~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~ 244 (251)
..++|++.++-..- +..++.+.|.++++.++ +||++-||| +..++.+.+. ||++-+|-.|.
T Consensus 237 ~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L 306 (360)
T COG1304 237 GTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFL 306 (360)
T ss_pred cCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHH
Confidence 35788988875421 22456788999999874 999999999 7888888886 99998875543
No 407
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.61 E-value=9.3 Score=34.60 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=56.3
Q ss_pred cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEE
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPIL 218 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~ 218 (251)
.+.+...|+.+| ++.+.-|.+.. + +.....+.++..+.++++.+ ...-...+.+.++++++.+++||+
T Consensus 165 ~~~v~~lr~~~g--~~~l~vD~n~~----~--~~~~A~~~~~~l~~~~l~~i----EeP~~~~d~~~~~~L~~~~~ipIa 232 (316)
T cd03319 165 IERIRAIREAAP--DARLRVDANQG----W--TPEEAVELLRELAELGVELI----EQPVPAGDDDGLAYLRDKSPLPIM 232 (316)
T ss_pred HHHHHHHHHhCC--CCeEEEeCCCC----c--CHHHHHHHHHHHHhcCCCEE----ECCCCCCCHHHHHHHHhcCCCCEE
Confidence 444556677776 55665454411 1 12223333444444566655 111112356789999999999999
Q ss_pred EecCC-ChHhHHHhhc---CCEEEEec
Q psy9039 219 IGSGV-TSDNVEHYMT---ADALIIGS 241 (251)
Q Consensus 219 vG~GI-~~~~v~~~~~---ADGvIVGS 241 (251)
.+.-+ +.++++++++ +|++++-.
T Consensus 233 ~~E~~~~~~~~~~~~~~~~~d~v~~~~ 259 (316)
T cd03319 233 ADESCFSAADAARLAGGGAYDGINIKL 259 (316)
T ss_pred EeCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 99988 7899988884 89888753
No 408
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=78.60 E-value=9 Score=35.79 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecc
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAE 122 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~ 122 (251)
+.|.+.|+ |.|++ |+|.+.+ .+ ...++++.+.... ..+...+ ......+..+...|.+.++..
T Consensus 29 ~~L~~~Gv-~~IEv----G~p~~~~---~~------~e~i~~i~~~~~~-~~v~~~~--r~~~~di~~a~~~g~~~i~i~ 91 (363)
T TIGR02090 29 RKLDELGV-DVIEA----GFPIASE---GE------FEAIKKISQEGLN-AEICSLA--RALKKDIDKAIDCGVDSIHTF 91 (363)
T ss_pred HHHHHcCC-CEEEE----eCCCCCh---HH------HHHHHHHHhcCCC-cEEEEEc--ccCHHHHHHHHHcCcCEEEEE
Confidence 66889999 99985 7776644 11 2345555544331 2333322 222455666677788877752
Q ss_pred cccc-c----cc--CCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCC
Q psy9039 123 SFVF-G----HM--ADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGN 195 (251)
Q Consensus 123 ~~~~-~----~~--~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~ 195 (251)
.-+. . .+ +.+. ......+..++.++.|. .+.+- ...+.. ++...+.+.++.+...|+|.+.+.=+
T Consensus 92 ~~~Sd~~~~~~~~~~~~~-~~~~~~~~i~~ak~~G~-~v~~~----~eda~r--~~~~~l~~~~~~~~~~g~~~i~l~DT 163 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDE-VLEKAVEAVEYAKEHGL-IVEFS----AEDATR--TDIDFLIKVFKRAEEAGADRINIADT 163 (363)
T ss_pred EcCCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHcCC-EEEEE----EeecCC--CCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1000 0 00 0000 01224456666677665 23221 111111 23345566666666678998877543
Q ss_pred CCCCC--CCH-HHHHHHHhcCCCCEEEecCC
Q psy9039 196 ATGDP--ADV-SQLMSVKNAVDLPILIGSGV 223 (251)
Q Consensus 196 ~~g~~--~~~-~~l~~vr~~~~~PV~vG~GI 223 (251)
- |.. ... ++++.+++..++| +++=.
T Consensus 164 ~-G~~~P~~v~~li~~l~~~~~~~--l~~H~ 191 (363)
T TIGR02090 164 V-GVLTPQKMEELIKKLKENVKLP--ISVHC 191 (363)
T ss_pred C-CccCHHHHHHHHHHHhcccCce--EEEEe
Confidence 2 322 223 5677787776544 55544
No 409
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=78.58 E-value=8.4 Score=34.84 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=39.5
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCC-Ch-HhHH---Hhhc--CCEEEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGV-TS-DNVE---HYMT--ADALII 239 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI-~~-~~v~---~~~~--ADGvIV 239 (251)
+.+..+.....|++++++.|+. |+.. + .+.++.+++.+ ++||++|-|- +. +.++ .+.+ ||++.+
T Consensus 23 l~~lv~~~~~~Gv~gi~v~Gst-GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v 101 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTS-GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMV 101 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccC-cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEE
Confidence 3333333334699999988874 4432 1 13344455544 5999999997 44 4433 2223 999988
Q ss_pred ec
Q psy9039 240 GS 241 (251)
Q Consensus 240 GS 241 (251)
..
T Consensus 102 ~p 103 (294)
T TIGR02313 102 IV 103 (294)
T ss_pred cC
Confidence 65
No 410
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=78.44 E-value=9 Score=34.57 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=39.0
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCC-CH----HHHHHHHhcC--CCCEEEecCCC-hHhHH---Hhhc--CCEEEEec
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPA-DV----SQLMSVKNAV--DLPILIGSGVT-SDNVE---HYMT--ADALIIGS 241 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~-~~----~~l~~vr~~~--~~PV~vG~GI~-~~~v~---~~~~--ADGvIVGS 241 (251)
+.+..+.....|+|++.+.|+...... +. +.++.+++.+ ++||++|-|-+ .+.++ .+.+ ||++.+-.
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECC
Confidence 333333333469999999887533322 22 3344555554 59999998864 33333 2222 89987753
No 411
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=78.33 E-value=9.1 Score=33.97 Aligned_cols=67 Identities=22% Similarity=0.402 Sum_probs=41.3
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCC-ChH-hHH---Hhhc--CCEEE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGV-TSD-NVE---HYMT--ADALI 238 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI-~~~-~v~---~~~~--ADGvI 238 (251)
.+++..+.....|++++.+.|+. |+.. + .+.++.+++.+ ++||++|-|- +.+ .++ .+.+ ||++.
T Consensus 19 ~~~~~i~~l~~~Gv~gi~~~Gst-GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~ 97 (281)
T cd00408 19 ALRRLVEFLIEAGVDGLVVLGTT-GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVL 97 (281)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC-cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEE
Confidence 33444444444699999988864 4322 2 23455666665 6999999998 443 333 2223 99998
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
+-.
T Consensus 98 v~p 100 (281)
T cd00408 98 VVP 100 (281)
T ss_pred ECC
Confidence 865
No 412
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.17 E-value=4.3 Score=36.59 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCcCCCCccEEEEeecC-CCCcc----cc-------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMH-DVPYV----LE-------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALAT 110 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~-~~Pf~----~p-------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i 110 (251)
+.|++.|+ |+|.+.|-. ++... .| .-.||.+.....+.++++++.++ +|+..+.=..++......
T Consensus 176 ~~l~~~G~-d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~--ipvi~~GGI~~~~da~~~ 252 (301)
T PRK07259 176 KAAEEAGA-DGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD--IPIIGMGGISSAEDAIEF 252 (301)
T ss_pred HHHHHcCC-CEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC--CCEEEECCCCCHHHHHHH
Confidence 55788999 999987732 21100 00 01233333335677888998887 798777655553333333
Q ss_pred HHHcCccceecc
Q psy9039 111 AQAAGLDFIRAE 122 (251)
Q Consensus 111 a~a~g~~Fir~~ 122 (251)
...|++++..+
T Consensus 253 -l~aGAd~V~ig 263 (301)
T PRK07259 253 -IMAGASAVQVG 263 (301)
T ss_pred -HHcCCCceeEc
Confidence 45788888863
No 413
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=78.10 E-value=9.7 Score=32.64 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=43.2
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEE-------e--cCC--ChHhHHHhhc--CCEEE
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILI-------G--SGV--TSDNVEHYMT--ADALI 238 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~v-------G--~GI--~~~~v~~~~~--ADGvI 238 (251)
...+.++++.....|+.++.+. +.+.++++|+.+++|++. + +=+ +.+++.++.. ||.++
T Consensus 22 ~~~~~~~a~a~~~~G~~~~~~~--------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~ 93 (221)
T PRK01130 22 PEIMAAMALAAVQGGAVGIRAN--------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIA 93 (221)
T ss_pred HHHHHHHHHHHHHCCCeEEEcC--------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEE
Confidence 3456666666666788776653 267889999988999861 1 222 3567887775 99777
Q ss_pred EeceE
Q psy9039 239 IGSHF 243 (251)
Q Consensus 239 VGS~~ 243 (251)
+....
T Consensus 94 ~d~~~ 98 (221)
T PRK01130 94 LDATL 98 (221)
T ss_pred EeCCC
Confidence 76554
No 414
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=78.00 E-value=8.9 Score=34.50 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCCcCCCCccEEEEeecC-CCCccc----c-------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMH-DVPYVL----E-------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALAT 110 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~-~~Pf~~----p-------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i 110 (251)
+.++++|+ |+|.+.|-. +..+.. | .-.||..-....+.++++++.++ +|+..+.=...+ ....-
T Consensus 176 ~~l~~~G~-d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~--ipvi~~GGI~s~-~da~~ 251 (300)
T TIGR01037 176 KAAEEAGA-DGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD--IPIIGVGGITSF-EDALE 251 (300)
T ss_pred HHHHHcCC-CEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC--CCEEEECCCCCH-HHHHH
Confidence 45788999 999998744 221110 0 01234332233467788888887 787766544332 22222
Q ss_pred HHHcCccceec
Q psy9039 111 AQAAGLDFIRA 121 (251)
Q Consensus 111 a~a~g~~Fir~ 121 (251)
....|++++..
T Consensus 252 ~l~~GAd~V~i 262 (300)
T TIGR01037 252 FLMAGASAVQV 262 (300)
T ss_pred HHHcCCCceee
Confidence 33477888775
No 415
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.45 E-value=12 Score=32.78 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=33.5
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+.+.++|+ |++++ -|.|+. ...++++.+|+. . ...++.+--+.+...+........+|+-
T Consensus 98 ~~~~~aG~-~giii---pDl~~e-----------e~~~~~~~~~~~-g--~~~i~~i~P~T~~~~i~~i~~~~~~~vy 157 (242)
T cd04724 98 RDAKEAGV-DGLII---PDLPPE-----------EAEEFREAAKEY-G--LDLIFLVAPTTPDERIKKIAELASGFIY 157 (242)
T ss_pred HHHHHCCC-cEEEE---CCCCHH-----------HHHHHHHHHHHc-C--CcEEEEeCCCCCHHHHHHHHhhCCCCEE
Confidence 55678899 99986 555542 356777777764 3 3445544333333333333332356764
No 416
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=76.43 E-value=4.8 Score=38.07 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhcCCCCEEEecCCChHhHHHhhc--CCEEEEec
Q psy9039 201 ADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 201 ~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~--ADGvIVGS 241 (251)
.+++.|+.+|+.++.||++.+=++.+++..+.+ +|+++|+-
T Consensus 232 ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 232 ISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECC
Confidence 357889999999999999876559999999886 99999974
No 417
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=76.40 E-value=18 Score=32.28 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=81.7
Q ss_pred cccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccE
Q psy9039 16 PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPV 95 (251)
Q Consensus 16 p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~ 95 (251)
||-.. |+.+++...+.+ +.|.+.|+ |++.+ +|. -.. .-..+.+--.++++.+.+..+..+|+
T Consensus 12 Pf~~d--g~id~~~~~~~i--------~~l~~~Gv-~gl~~---~Gs-tGE---~~~Lt~~Er~~l~~~~~~~~~~~~~v 73 (289)
T PF00701_consen 12 PFNAD--GSIDEDALKRLI--------DFLIEAGV-DGLVV---LGS-TGE---FYSLTDEERKELLEIVVEAAAGRVPV 73 (289)
T ss_dssp -BETT--SSB-HHHHHHHH--------HHHHHTTS-SEEEE---SST-TTT---GGGS-HHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCC--cCcCHHHHHHHH--------HHHHHcCC-CEEEE---CCC-Ccc---cccCCHHHHHHHHHHHHHHccCceEE
Confidence 55334 555555444444 66788999 99987 322 000 00122222333444444433323688
Q ss_pred EEEEeeCChHHHHHHH---HHcCccceecccccccccCCCceeecCcchhHHHHHhcCC-CcchhhhhhHh-hccCCCCC
Q psy9039 96 GVQILSGCNKAALATA---QAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVFTDIKK-KHSSHAIT 170 (251)
Q Consensus 96 Gvn~~~N~~~~~~~ia---~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~a~v~~-k~~~~~~~ 170 (251)
.+.+-.+....++..+ ...|++-+-. ...-...++.+++.+|.+.+-. .++.++-.-.| ..+..
T Consensus 74 i~gv~~~st~~~i~~a~~a~~~Gad~v~v--------~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~--- 142 (289)
T PF00701_consen 74 IAGVGANSTEEAIELARHAQDAGADAVLV--------IPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGND--- 142 (289)
T ss_dssp EEEEESSSHHHHHHHHHHHHHTT-SEEEE--------EESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSST---
T ss_pred EecCcchhHHHHHHHHHHHhhcCceEEEE--------eccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccC---
Confidence 8887776544444443 2233332211 0111111234455555444421 22233311222 22322
Q ss_pred CcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhh-c-CCEEEEece
Q psy9039 171 ADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYM-T-ADALIIGSH 242 (251)
Q Consensus 171 ~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~-~-ADGvIVGS~ 242 (251)
.+.+.+.+.+..-.+- |-+.. ..+...+.++++.. ++.++.| ..+.+...+ . +||++.|++
T Consensus 143 --ls~~~l~~L~~~~nv~-----giK~s-~~~~~~~~~~~~~~~~~~~v~~G---~d~~~~~~l~~G~~G~is~~~ 207 (289)
T PF00701_consen 143 --LSPETLARLAKIPNVV-----GIKDS-SGDLERLIQLLRAVGPDFSVFCG---DDELLLPALAAGADGFISGLA 207 (289)
T ss_dssp --SHHHHHHHHHTSTTEE-----EEEES-SSBHHHHHHHHHHSSTTSEEEES---SGGGHHHHHHTTSSEEEESGG
T ss_pred --CCHHHHHHHhcCCcEE-----EEEcC-chhHHHHHHHhhhcccCeeeecc---ccccccccccccCCEEEEccc
Confidence 3444444444421222 22211 12345555555554 4555544 444444444 4 999999875
No 418
>PRK13753 dihydropteroate synthase; Provisional
Probab=76.32 E-value=6.1 Score=35.82 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=46.7
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHH-HHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEIT-ANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~-aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+.+++.++.|.+.|+ |.|-|-=+-.-|.++++ .++.. .-+..+++.+++. . .|+-+.+|... + +..|...
T Consensus 25 d~a~~~a~~m~~~GA-dIIDIGgeSTrPga~~v--s~eeE~~Rv~pvI~~l~~~-~--~~ISIDT~~~~-v--a~~al~a 95 (279)
T PRK13753 25 AGAVTAAIEMLRVGS-DVVDVGPAASHPDARPV--SPADEIRRIAPLLDALSDQ-M--HRVSIDSFQPE-T--QRYALKR 95 (279)
T ss_pred HHHHHHHHHHHHCCC-cEEEECCCCCCCCCCcC--CHHHHHHHHHHHHHHHHhC-C--CcEEEECCCHH-H--HHHHHHc
Confidence 445555566888999 99987333334544442 22221 1233566777754 4 59999998643 3 4445567
Q ss_pred Cccceec
Q psy9039 115 GLDFIRA 121 (251)
Q Consensus 115 g~~Fir~ 121 (251)
|++++-.
T Consensus 96 GadiIND 102 (279)
T PRK13753 96 GVGYLND 102 (279)
T ss_pred CCCEEEe
Confidence 8888775
No 419
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=76.13 E-value=20 Score=31.66 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=52.7
Q ss_pred cchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEe-----cCC----CCCCCC-C-HHHHH----HHHhcCC--C
Q psy9039 153 NVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLII-----TGN----ATGDPA-D-VSQLM----SVKNAVD--L 215 (251)
Q Consensus 153 ~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~V-----TG~----~~g~~~-~-~~~l~----~vr~~~~--~ 215 (251)
++.++..-+.| +.- +++-+...+.|+.+...|+|-+.. ||. +++.+- + .++++ +.|...+ +
T Consensus 145 Evemlr~A~~k-~l~-t~~yV~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i 222 (276)
T COG5564 145 EVEMLREAHAK-DLL-TTPYVFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVI 222 (276)
T ss_pred HHHHHHHHHhc-ccc-ccceecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhcee
Confidence 45555444433 221 244466667777777779998742 332 332221 1 13333 2333333 8
Q ss_pred CEEEecCC-ChHhHHHhhc----CCEEEEeceEe
Q psy9039 216 PILIGSGV-TSDNVEHYMT----ADALIIGSHFK 244 (251)
Q Consensus 216 PV~vG~GI-~~~~v~~~~~----ADGvIVGS~~~ 244 (251)
|++.||=| +|++.+-.+. |||++=+|.+.
T Consensus 223 ~l~~GGPi~~p~da~yi~d~c~~~~gfygassme 256 (276)
T COG5564 223 PLCHGGPISMPEDARYILDRCPGCDGFYGASSME 256 (276)
T ss_pred eeccCCCcCCchhhHHHHhhCCCCCcccccchhh
Confidence 99999999 6888776553 99999888764
No 420
>KOG4201|consensus
Probab=76.07 E-value=7.7 Score=34.06 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=48.1
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCC-CCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc--CCEEEEeceEee
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATG-DPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT--ADALIIGSHFKQ 245 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g-~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~--ADGvIVGS~~~~ 245 (251)
++..++..+.+-..|+-.++|-...-. ...+++.-.++-+.. |+=++.=+|| ||++++.+.. ..++.||-++++
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk 271 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMK 271 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHh
Confidence 344455555555458888888765322 122332222222222 5667778999 7999999985 999999988877
Q ss_pred c
Q psy9039 246 G 246 (251)
Q Consensus 246 ~ 246 (251)
.
T Consensus 272 ~ 272 (289)
T KOG4201|consen 272 Q 272 (289)
T ss_pred c
Confidence 5
No 421
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.99 E-value=7.8 Score=37.75 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 178 TAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
.++.....|+|.+++--++.....-.+.++++|+.. +++|+ +|-| |.+++..+.. ||++-||
T Consensus 231 ~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 231 KARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEEC
Confidence 333333468999887554422222357899999886 67766 5566 8999999986 9999865
No 422
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=75.80 E-value=30 Score=33.49 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=88.1
Q ss_pred CCCcCCCCccEEEEeecCCC----CccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEE-------eeCCh----HHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDV----PYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQI-------LSGCN----KAA 107 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~----Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~-------~~N~~----~~~ 107 (251)
+.|.+.|+ +.|++-.--.+ .|..+ . -.+.++++++..+. .++...+ |.|-+ ..-
T Consensus 33 ~~Ld~~Gv-~~IE~~ggatf~~~~~f~~e---~------p~e~l~~l~~~~~~-~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 33 EKLDNAGY-HSLEMWGGATFDACLRFLNE---D------PWERLRKIRKAVKK-TKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred HHHHHcCC-CEEEecCCccchhhhccCCC---C------HHHHHHHHHHhCCC-CEEEEEeccccccccccCchhhHHHH
Confidence 56778899 99987211112 33333 1 13345666666443 3654322 11100 122
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchh-hhhhHhhccCCCCCCcccHHHHHHHhhhcc
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLV-FTDIKKKHSSHAITADVDITETAKAASFFL 186 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i-~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~ 186 (251)
...|...|.+.+|+.. .+.+- ....+..++.++.|. .+.. ++ -.-+ |. .+.....+.++.+...|
T Consensus 102 v~~A~~~Gvd~irif~----~lnd~----~n~~~~v~~ak~~G~-~v~~~i~---~t~~-p~-~~~~~~~~~a~~l~~~G 167 (448)
T PRK12331 102 VQKSVENGIDIIRIFD----ALNDV----RNLETAVKATKKAGG-HAQVAIS---YTTS-PV-HTIDYFVKLAKEMQEMG 167 (448)
T ss_pred HHHHHHCCCCEEEEEE----ecCcH----HHHHHHHHHHHHcCC-eEEEEEE---eecC-CC-CCHHHHHHHHHHHHHcC
Confidence 3556677888888631 11111 134556677777774 2211 11 0001 21 22344566666666679
Q ss_pred ccEEEecCCCCCCC-C-CH-HHHHHHHhcCCCCEEE----ecCCChHhHHHhh-c-CCEE
Q psy9039 187 SDGLIITGNATGDP-A-DV-SQLMSVKNAVDLPILI----GSGVTSDNVEHYM-T-ADAL 237 (251)
Q Consensus 187 ~D~v~VTG~~~g~~-~-~~-~~l~~vr~~~~~PV~v----G~GI~~~~v~~~~-~-ADGv 237 (251)
+|.+++.=+. |.. | .. ++++.+|+.+++||-+ -+|....|.-+.+ . ||.+
T Consensus 168 ad~I~i~Dt~-G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~v 226 (448)
T PRK12331 168 ADSICIKDMA-GILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADII 226 (448)
T ss_pred CCEEEEcCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEE
Confidence 9999886442 322 2 23 6788999888888765 3566445544443 3 6654
No 423
>KOG4013|consensus
Probab=75.56 E-value=2.9 Score=36.06 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=32.3
Q ss_pred cccEEEecCCCCCCCCCHHHHHHHHhc--CCCCEEEecCCChHhHHHhhc
Q psy9039 186 LSDGLIITGNATGDPADVSQLMSVKNA--VDLPILIGSGVTSDNVEHYMT 233 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~~~~~l~~vr~~--~~~PV~vG~GI~~~~v~~~~~ 233 (251)
|--.+..+|.+..-......|+++-+. -++-|+-|.||+..|+++++.
T Consensus 150 GF~rvLtSG~~psAldGv~~i~~lie~hkg~i~VmpG~Gi~~sNl~~ile 199 (255)
T KOG4013|consen 150 GFKRVLTSGQEPSALDGVYIIRELIELHKGKIDVMPGCGINSSNLANILE 199 (255)
T ss_pred hHHHHhhcCCCcccccchHHHHHHHHHhcCCEEEecCCCcchHHHHHHHh
Confidence 444555677665444445556655443 368899999999999988874
No 424
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=75.32 E-value=9.9 Score=33.49 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=55.7
Q ss_pred CcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCE
Q psy9039 138 QAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPI 217 (251)
Q Consensus 138 da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV 217 (251)
|.+.+...|+.+|. ++.+.-|.+.. + +.....+.++..+.++.+.+-- .-...+.+.++++++.+++||
T Consensus 115 d~~~v~~vr~~~g~-~~~l~vDan~~----~--~~~~a~~~~~~l~~~~i~~iEe----P~~~~d~~~~~~l~~~~~ipi 183 (265)
T cd03315 115 DVAVVAALREAVGD-DAELRVDANRG----W--TPKQAIRALRALEDLGLDYVEQ----PLPADDLEGRAALARATDTPI 183 (265)
T ss_pred HHHHHHHHHHhcCC-CCEEEEeCCCC----c--CHHHHHHHHHHHHhcCCCEEEC----CCCcccHHHHHHHHhhCCCCE
Confidence 34445566777764 55665444311 1 1122223333333456666521 111234678889999999999
Q ss_pred EEecCC-ChHhHHHhhc---CCEEEEe
Q psy9039 218 LIGSGV-TSDNVEHYMT---ADALIIG 240 (251)
Q Consensus 218 ~vG~GI-~~~~v~~~~~---ADGvIVG 240 (251)
+.+..+ ++.++.+++. +|.+.+-
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999 6888888773 8888763
No 425
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=74.79 E-value=8.6 Score=37.36 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHH
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAA 107 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~ 107 (251)
+.+.+.+.+ +.+.+.|+ |.|-|... .|-.+...+.++++++|+.++ +|+++-+--+.+ .+.
T Consensus 151 t~e~~~~~a----~~l~~~Ga-d~I~i~Dt----------~G~l~P~~v~~Lv~~lk~~~~--vpI~~H~Hnt~GlA~AN 213 (467)
T PRK14041 151 TLEYYLEFA----RELVDMGV-DSICIKDM----------AGLLTPKRAYELVKALKKKFG--VPVEVHSHCTTGLASLA 213 (467)
T ss_pred CHHHHHHHH----HHHHHcCC-CEEEECCc----------cCCcCHHHHHHHHHHHHHhcC--CceEEEecCCCCcHHHH
Confidence 445554444 45678899 99965333 455666778999999999988 799999875543 444
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCC
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA 151 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~ 151 (251)
+-.|...|++.+..+. +......| ++..+++...-+..+.
T Consensus 214 ~laAieaGad~vD~sv--~~~g~gag--N~atE~lv~~L~~~g~ 253 (467)
T PRK14041 214 YLAAVEAGADMFDTAI--SPFSMGTS--QPPFESMYYAFRENGK 253 (467)
T ss_pred HHHHHHhCCCEEEeec--cccCCCCC--ChhHHHHHHHHHhcCC
Confidence 4455678888887531 11111112 4455555555444443
No 426
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=74.73 E-value=15 Score=34.24 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=31.5
Q ss_pred cccEEEec-CCCCCCC----C--CHHHHHHH----HhcC------CCCEEE--ecCCChHhHHHhhc
Q psy9039 186 LSDGLIIT-GNATGDP----A--DVSQLMSV----KNAV------DLPILI--GSGVTSDNVEHYMT 233 (251)
Q Consensus 186 ~~D~v~VT-G~~~g~~----~--~~~~l~~v----r~~~------~~PV~v--G~GI~~~~v~~~~~ 233 (251)
++|++-|+ |+..|.. + +.++|+++ ++.+ ++|+++ |+|++.+++++..+
T Consensus 200 gvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~ 266 (345)
T cd00946 200 PNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAIS 266 (345)
T ss_pred CceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHH
Confidence 78988664 4433332 2 45778887 5444 688887 56667899988764
No 427
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=74.71 E-value=39 Score=30.61 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=22.8
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHh-hc-CCEEEEece
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHY-MT-ADALIIGSH 242 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~-~~-ADGvIVGS~ 242 (251)
+...+.++++.. +.-|+.|..-........ .. |+|.|.|++
T Consensus 169 d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~a 213 (303)
T PRK03620 169 DIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVF 213 (303)
T ss_pred CHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHH
Confidence 466666665554 455565543222333333 34 999998763
No 428
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=74.71 E-value=9.7 Score=34.98 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=45.4
Q ss_pred CCCcCCCCccEEEEeecCCCCcccc---------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLE---------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p---------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a 113 (251)
+.++++|+ |+|.+.|-.--+..+. .-.||.+-....+.++++++.++ +|+.-+.=...+..++.. ..
T Consensus 182 ~~l~~~Ga-dgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~--ipIig~GGI~s~~Da~e~-l~ 257 (325)
T cd04739 182 KQLDAAGA-DGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVK--ASLAASGGVHDAEDVVKY-LL 257 (325)
T ss_pred HHHHHcCC-CeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccC--CCEEEECCCCCHHHHHHH-HH
Confidence 45688999 9999999642222211 01244333334567888888776 787665433333444444 34
Q ss_pred cCccceecc
Q psy9039 114 AGLDFIRAE 122 (251)
Q Consensus 114 ~g~~Fir~~ 122 (251)
.|++.++++
T Consensus 258 aGA~~Vqv~ 266 (325)
T cd04739 258 AGADVVMTT 266 (325)
T ss_pred cCCCeeEEe
Confidence 788888874
No 429
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=74.69 E-value=32 Score=29.99 Aligned_cols=136 Identities=17% Similarity=0.200 Sum_probs=71.0
Q ss_pred cCCCCCCCc-chHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEE
Q psy9039 20 EAESGPEIT-ANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQ 98 (251)
Q Consensus 20 ~~pG~P~~~-~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn 98 (251)
.+|++|-|- .+++++ +.|.+.|+ |.|- +|--+... -+| . ...++++.+ .+ +..
T Consensus 76 d~~~s~v~ITptlkeV--------d~L~~~Ga-~IIA----~DaT~R~R-P~~--~---~~~~i~~~k--~~-----~~l 129 (229)
T COG3010 76 DYPDSPVRITPTLKEV--------DALAEAGA-DIIA----FDATDRPR-PDG--D---LEELIARIK--YP-----GQL 129 (229)
T ss_pred CCCCCCceecccHHHH--------HHHHHCCC-cEEE----eecccCCC-Ccc--h---HHHHHHHhh--cC-----CcE
Confidence 456666554 489999 99999999 9996 46655542 244 2 445555532 22 233
Q ss_pred EeeCCh-HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHH
Q psy9039 99 ILSGCN-KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITE 177 (251)
Q Consensus 99 ~~~N~~-~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~ 177 (251)
++.... .+.-=.|...|.+|+-. .+.|..--..-.-.||.. +++...+ .+.++++. | .-...+
T Consensus 130 ~MAD~St~ee~l~a~~~G~D~IGT-TLsGYT~~~~~~~~pDf~-lvk~l~~---~~~~vIAE-----G------r~~tP~ 193 (229)
T COG3010 130 AMADCSTFEEGLNAHKLGFDIIGT-TLSGYTGYTEKPTEPDFQ-LVKQLSD---AGCRVIAE-----G------RYNTPE 193 (229)
T ss_pred EEeccCCHHHHHHHHHcCCcEEec-ccccccCCCCCCCCCcHH-HHHHHHh---CCCeEEee-----C------CCCCHH
Confidence 334321 33333456688899874 233321101112233322 2222222 24455531 1 112345
Q ss_pred HHHHhhhccccEEEecCCCC
Q psy9039 178 TAKAASFFLSDGLIITGNAT 197 (251)
Q Consensus 178 ~a~~a~~~~~D~v~VTG~~~ 197 (251)
.|+.+...|++++.|-|+-|
T Consensus 194 ~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 194 QAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred HHHHHHHhCCeEEEECcccC
Confidence 56777778999988876644
No 430
>KOG2550|consensus
Probab=74.68 E-value=8.3 Score=36.89 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=43.9
Q ss_pred hccccEEEecCCCCCCC-CCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc--CCEEEEe
Q psy9039 184 FFLSDGLIITGNATGDP-ADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~-~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~--ADGvIVG 240 (251)
..|+|+++.--+. |.. -.++.++.+|+.. ++.|+.|=.+|.+++++++. |||.=||
T Consensus 261 ~aGvdvviLDSSq-GnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 261 QAGVDVVILDSSQ-GNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred hcCCcEEEEecCC-CcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence 3589999886543 333 3578899999876 67888777779999999996 9999887
No 431
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=74.59 E-value=2.8 Score=37.58 Aligned_cols=158 Identities=11% Similarity=0.093 Sum_probs=70.5
Q ss_pred CcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEE-EEeeCChHHHHHHHHHcCccceeccc
Q psy9039 45 SVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGV-QILSGCNKAALATAQAAGLDFIRAES 123 (251)
Q Consensus 45 l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gv-n~~~N~~~~~~~ia~a~g~~Fir~~~ 123 (251)
+.++|+ |.|+|-.-+++-..-....-|++..-|..-.+.||+-.+ .++.+ .+=+...-.+...|.....+|++.
T Consensus 32 ~d~agv-D~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~--~~~vv~DmPf~sy~~s~e~av~nA~rl~ke-- 106 (261)
T PF02548_consen 32 ADEAGV-DIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAP--NAFVVADMPFGSYQASPEQAVRNAGRLMKE-- 106 (261)
T ss_dssp HHHTT--SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-T--SSEEEEE--TTSSTSSHHHHHHHHHHHHHT--
T ss_pred HHHcCC-CEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCC--CceEEecCCcccccCCHHHHHHHHHHHHHh--
Confidence 578999 999985333221111111357888899999999999887 34433 322211101112222221355552
Q ss_pred ccccccCCCceeecCcchhHHHHHhcCCCcchhhhhh--Hhhc-----cCCCCC-CcccHHHHHHHhh---hccccEEEe
Q psy9039 124 FVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDI--KKKH-----SSHAIT-ADVDITETAKAAS---FFLSDGLII 192 (251)
Q Consensus 124 ~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v--~~k~-----~~~~~~-~~~~i~~~a~~a~---~~~~D~v~V 192 (251)
.+.+.+-..-..+....-+.+-...|.+++-+ .|++ |..... +.....++.+.|. ..||-++.+
T Consensus 107 -----~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivl 181 (261)
T PF02548_consen 107 -----AGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVL 181 (261)
T ss_dssp -----TT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEE
T ss_pred -----cCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEee
Confidence 12222221112233333344433466776533 3332 111101 1123344444443 368888887
Q ss_pred cCCCCCCCCCHHHHHHHHhcCCCCEE
Q psy9039 193 TGNATGDPADVSQLMSVKNAVDLPIL 218 (251)
Q Consensus 193 TG~~~g~~~~~~~l~~vr~~~~~PV~ 218 (251)
... ..++-+++.+.+++|+|
T Consensus 182 E~v------p~~la~~It~~l~IPtI 201 (261)
T PF02548_consen 182 ECV------PAELAKAITEALSIPTI 201 (261)
T ss_dssp ESB------BHHHHHHHHHHSSS-EE
T ss_pred ecC------HHHHHHHHHHhCCCCEE
Confidence 643 24556678888999998
No 432
>PRK10481 hypothetical protein; Provisional
Probab=74.36 E-value=14 Score=32.37 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCc
Q psy9039 30 NMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPY 64 (251)
Q Consensus 30 ~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf 64 (251)
|.+.|....-+-...|.+.|+ |++++-=+.++|-
T Consensus 71 s~~~v~~~lq~~i~~l~~~g~-d~ivl~Ctgdfp~ 104 (224)
T PRK10481 71 SKQKVERDLQSVIEVLDNQGY-DVILLLCTGEFPS 104 (224)
T ss_pred EHHHHHHHHHHHHHHHHhCCC-CEEEEEecCCCCC
Confidence 567777777777777888889 8888877776665
No 433
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=74.34 E-value=24 Score=31.30 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV 88 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~ 88 (251)
+.+.++|+ |++++ .|.|+.. ..+++..+|+.
T Consensus 109 ~~~~~aGv-dgvii---pDlp~ee-----------~~~~~~~~~~~ 139 (256)
T TIGR00262 109 AKCKEVGV-DGVLV---ADLPLEE-----------SGDLVEAAKKH 139 (256)
T ss_pred HHHHHcCC-CEEEE---CCCChHH-----------HHHHHHHHHHC
Confidence 55678999 99986 5555532 45666777764
No 434
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=74.28 E-value=11 Score=34.32 Aligned_cols=60 Identities=25% Similarity=0.515 Sum_probs=40.4
Q ss_pred hccccEEEec-CCCCCC----C--CCHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD----P--ADVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~----~--~~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-++|++-|+ |...|. + -+.++|+++++.+++|+++ |+|+..++++++.. .-=+=++|.+
T Consensus 169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 239 (288)
T TIGR00167 169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL 239 (288)
T ss_pred ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence 3589999774 543332 2 2468899999999999998 45556788988774 4334444443
No 435
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.17 E-value=11 Score=34.32 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=41.3
Q ss_pred hccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 184 FFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 184 ~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
.-++|++-|+ |...|. .+ +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=|+|.+
T Consensus 166 ~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~ 235 (284)
T PRK12857 166 ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNI 235 (284)
T ss_pred HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3589999774 543343 22 468899999999999988 55667888988774 4444445544
No 436
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=73.96 E-value=2.8 Score=42.33 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=26.5
Q ss_pred CCCEEEecCCChHhHHHhhc---CCEEEEece
Q psy9039 214 DLPILIGSGVTSDNVEHYMT---ADALIIGSH 242 (251)
Q Consensus 214 ~~PV~vG~GI~~~~v~~~~~---ADGvIVGS~ 242 (251)
++||+-||-++++|+.+++. .||+.||.+
T Consensus 599 ~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgA 630 (645)
T PRK13962 599 KVRILYGGSVKSENAAGLFNQPDIDGGLVGGA 630 (645)
T ss_pred cceEEecCCCCHhHHHHHhcCCCCCeEEeehH
Confidence 48999999999999999985 899999975
No 437
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=73.76 E-value=11 Score=32.50 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=47.1
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC--ChHhHHHhhc--CCEEEEec
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV--TSDNVEHYMT--ADALIIGS 241 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI--~~~~v~~~~~--ADGvIVGS 241 (251)
...++++.+...|+..+=+|=. + +...+.|+++++....|+++|-|- +++++...+. ||+++.+.
T Consensus 23 ~~~~~~~a~~~gGi~~iEvt~~-~--~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~ 91 (206)
T PRK09140 23 EALAHVGALIEAGFRAIEIPLN-S--PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN 91 (206)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC-C--ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC
Confidence 4445555555678999999832 2 223467888887776678888886 7999999886 99988764
No 438
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=73.61 E-value=14 Score=33.20 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=39.2
Q ss_pred HHHHHHHhhhc-cccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-ChHh-HH---Hhhc--CCEEE
Q psy9039 175 ITETAKAASFF-LSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TSDN-VE---HYMT--ADALI 238 (251)
Q Consensus 175 i~~~a~~a~~~-~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~~~-v~---~~~~--ADGvI 238 (251)
+.+..+..... |++++.+.|+. |+.. +. +.++.+++.+ ++||++|-|- +.++ ++ .+.+ ||++.
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~Gst-GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~ 101 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGST-GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAIS 101 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 33444444446 99999998864 4432 11 2344455554 5899999986 4433 33 2223 99998
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
+-+
T Consensus 102 ~~~ 104 (288)
T cd00954 102 AIT 104 (288)
T ss_pred EeC
Confidence 754
No 439
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=73.39 E-value=20 Score=32.51 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=36.9
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
.+|++.|++.|+ |.|- .-. -.. | ...+++++|+.+. .||---+ .| ....--|...|++|
T Consensus 77 ~~Ea~~L~eaGv-DiID---aT~--r~r-----P-----~~~~~~~iK~~~~--~l~MAD~-st--leEal~a~~~Gad~ 135 (283)
T cd04727 77 FVEAQILEALGV-DMID---ESE--VLT-----P-----ADEEHHIDKHKFK--VPFVCGA-RN--LGEALRRISEGAAM 135 (283)
T ss_pred HHHHHHHHHcCC-CEEe---ccC--CCC-----c-----HHHHHHHHHHHcC--CcEEccC-CC--HHHHHHHHHCCCCE
Confidence 567799999999 9992 111 111 2 3667788888765 4543221 11 22222245588999
Q ss_pred eecc
Q psy9039 119 IRAE 122 (251)
Q Consensus 119 ir~~ 122 (251)
++..
T Consensus 136 I~TT 139 (283)
T cd04727 136 IRTK 139 (283)
T ss_pred EEec
Confidence 9963
No 440
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=73.38 E-value=68 Score=28.83 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=76.9
Q ss_pred CCCcCCC-CccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCcc
Q psy9039 43 PPSVPVG-VQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLD 117 (251)
Q Consensus 43 ~~l~~~G-v~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~ 117 (251)
+.+.+.| + |+|.+- +.+-.++- +.+--.++++.+++.....+|+.+.+-.+....+...+ ...|++
T Consensus 28 ~~~i~~G~v-~gi~~~GstGE~~~L--------t~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad 98 (290)
T TIGR00683 28 RHNIDKMKV-DGLYVGGSTGENFML--------STEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYD 98 (290)
T ss_pred HHHHhCCCc-CEEEECCcccccccC--------CHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 6678889 9 999762 11112221 11222334444444443336877777655533333332 223333
Q ss_pred ceecccccccccCCCceeecCcchhHHHHHhc-CCC-cchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecC
Q psy9039 118 FIRAESFVFGHMADEGLMNAQAGPLLRYRKQI-GAD-NVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITG 194 (251)
Q Consensus 118 Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l-~~~-~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG 194 (251)
.+-. ...-.+.+..+++..|-+.+ ... +..++ +++-...|.. .+.+.+.+.++. . -|.|
T Consensus 99 ~v~v--------~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~-----l~~~~i~~L~~~--p---nv~g 160 (290)
T TIGR00683 99 CLSA--------VTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVN-----MGIEQFGELYKN--P---KVLG 160 (290)
T ss_pred EEEE--------eCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccC-----cCHHHHHHHhcC--C---CEEE
Confidence 3222 11112223456777777666 221 33443 2221122322 333444333322 1 1334
Q ss_pred CCCCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 195 NATGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 195 ~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
-+.. ..+...+.++++.. +.-|+ .|-..--...+.. +||.+.|+.
T Consensus 161 iK~s-~~d~~~~~~~~~~~~~~~v~--~G~d~~~~~~l~~G~~G~i~~~~ 207 (290)
T TIGR00683 161 VKFT-AGDFYLLERLKKAYPNHLIW--AGFDEMMLPAASLGVDGAIGSTF 207 (290)
T ss_pred EEeC-CCCHHHHHHHHHhCCCCEEE--ECchHHHHHHHHCCCCEEEecHH
Confidence 3321 22456666665544 44343 4443333444445 999987643
No 441
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.15 E-value=11 Score=34.67 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=44.6
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh-HHH-HHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN-KAA-LATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~-~~~-~~ia~a~g~~Fir 120 (251)
+.+++.|+ |+|+| |...-|. ++...|......+.++++++|+.++ +|+.+.+--+.. ... ...+...|++++-
T Consensus 121 ~~~~~aga-d~iel-N~scpp~-~~~~~g~~~~~~~~eil~~v~~~~~--iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~ 195 (334)
T PRK07565 121 RQIEQAGA-DALEL-NIYYLPT-DPDISGAEVEQRYLDILRAVKSAVS--IPVAVKLSPYFSNLANMAKRLDAAGADGLV 195 (334)
T ss_pred HHHHHcCC-CEEEE-eCCCCCC-CCCCccccHHHHHHHHHHHHHhccC--CcEEEEeCCCchhHHHHHHHHHHcCCCeEE
Confidence 34567899 99987 4432233 2222344444556788999999888 899998654421 122 2334456777765
Q ss_pred c
Q psy9039 121 A 121 (251)
Q Consensus 121 ~ 121 (251)
.
T Consensus 196 ~ 196 (334)
T PRK07565 196 L 196 (334)
T ss_pred E
Confidence 4
No 442
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=72.99 E-value=16 Score=32.94 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcc-ccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-Ch-HhHH---Hhhc--CCEEE
Q psy9039 175 ITETAKAASFFL-SDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TS-DNVE---HYMT--ADALI 238 (251)
Q Consensus 175 i~~~a~~a~~~~-~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~-~~v~---~~~~--ADGvI 238 (251)
+.+..+.....| +|++.+.|+. |+.. +. +.++.+++.+ ++||++|-|- +. +.++ .+.+ |||+.
T Consensus 23 ~~~~i~~~i~~G~v~gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~ 101 (290)
T TIGR00683 23 LRQIIRHNIDKMKVDGLYVGGST-GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLS 101 (290)
T ss_pred HHHHHHHHHhCCCcCEEEECCcc-cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 333333333368 9999998874 4322 22 3344455554 5899999774 54 3333 2223 99998
Q ss_pred Eec
Q psy9039 239 IGS 241 (251)
Q Consensus 239 VGS 241 (251)
+..
T Consensus 102 v~~ 104 (290)
T TIGR00683 102 AVT 104 (290)
T ss_pred EeC
Confidence 864
No 443
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=72.97 E-value=68 Score=28.45 Aligned_cols=169 Identities=14% Similarity=0.139 Sum_probs=75.3
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.|.+.|+ |++.+- +.+-. ++ .+.+--.++++.+++.....+|+.+.+-.++...+...| ...|++.
T Consensus 28 ~~l~~~Gv-~gl~v~GstGE~-~~-------lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~ 98 (284)
T cd00950 28 EFQIENGT-DGLVVCGTTGES-PT-------LSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADA 98 (284)
T ss_pred HHHHHcCC-CEEEECCCCcch-hh-------CCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCE
Confidence 66788999 999862 11111 11 122223334455554443335776666555433444433 2233333
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcCC-Ccchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIGA-DNVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~-~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+- +.......+..+++.+|-+++-. .++.++ .+.-...|.. .+.+.+.+.++.-. |.|-+
T Consensus 99 v~--------~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~-----ls~~~~~~L~~~p~-----v~giK 160 (284)
T cd00950 99 AL--------VVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVN-----IEPETVLRLAEHPN-----IVGIK 160 (284)
T ss_pred EE--------EcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCC-----CCHHHHHHHhcCCC-----EEEEE
Confidence 22 22222233344566665555422 233333 2221112222 34444444443211 33333
Q ss_pred CCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhh-c-CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYM-T-ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~-~-ADGvIVGS~ 242 (251)
.. ..+...+.++++.. ++.++.|. . ..+...+ . ++|.+.|.+
T Consensus 161 ~s-~~~~~~~~~~~~~~~~~~~v~~G~--d-~~~~~~~~~G~~G~~s~~~ 206 (284)
T cd00950 161 EA-TGDLDRVSELIALCPDDFAVLSGD--D-ALTLPFLALGGVGVISVAA 206 (284)
T ss_pred EC-CCCHHHHHHHHHhCCCCeEEEeCC--h-HhHHHHHHCCCCEEEehHH
Confidence 21 22455566665554 34444443 3 3333433 4 999998764
No 444
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=72.86 E-value=12 Score=33.89 Aligned_cols=61 Identities=15% Similarity=0.366 Sum_probs=41.0
Q ss_pred hhccccEEEec-CCCCCC---CC--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGD---PA--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~---~~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |...|. .+ +.++|+++++.+++|+++ |+|+..+++++..+ .-=+=++|.+
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l 236 (285)
T PRK07709 166 EATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN 236 (285)
T ss_pred HHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence 33589999764 443333 12 468899999999999988 55556788888774 4444445543
No 445
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=72.86 E-value=18 Score=33.47 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCccEEEEeecCCCCccccCCCchH--HHHHHHHHHHHHHHhCCCCccEEEEEeeCCh---HHHHHHHHHcCccceecc
Q psy9039 48 VGVQHGVIVENMHDVPYVLEAESGPE--ITANMTRLCAEIRKVLPPSVPVGVQILSGCN---KAALATAQAAGLDFIRAE 122 (251)
Q Consensus 48 ~Gv~D~i~ieN~~~~Pf~~p~~~gp~--i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~---~~~~~ia~a~g~~Fir~~ 122 (251)
-|+ |.+-+|=-..+-|......|-. +++......++....++ .|+.+.----+. ...+.+|...|+.|--.
T Consensus 198 ~gv-DVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~--~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGv- 273 (325)
T TIGR01232 198 FNV-DVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATH--LPYIYLSAGVSAELFQETLKFAHEAGAKFNGV- 273 (325)
T ss_pred CCC-cEEEEecccccccccccCcccccccHHHHHHHHHHHhhccC--CCEEEEcCCCCHHHHHHHHHHHHHcCCCcceE-
Confidence 799 9999983333323332222211 11222223333333556 798776422221 45688999999988332
Q ss_pred cccccccCCCc---eeecCcchhHHHHHhcCCCcchhhhhhHhhccCCC
Q psy9039 123 SFVFGHMADEG---LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHA 168 (251)
Q Consensus 123 ~~~~~~~~~~G---li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~ 168 (251)
.||-..--++ ...++......+-+..|.+.+.-+..|..+.+.|+
T Consensus 274 -L~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~vl~~ta~~w 321 (325)
T TIGR01232 274 -LCGRATWSGAVQVYIEQGEDAAREWLRTTGFKNIDDLNKVLKDTATSW 321 (325)
T ss_pred -EeehhhhHhhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHHHHcCCCcC
Confidence 2332111122 23345455555555666666666666665554443
No 446
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=72.71 E-value=6 Score=34.69 Aligned_cols=61 Identities=30% Similarity=0.368 Sum_probs=41.4
Q ss_pred HHHHHhhhccccEEEecCCCCCCC-CCH-HHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEeceE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDP-ADV-SQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSHF 243 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~-~~~-~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~~ 243 (251)
+.++.....|.|++.|-|+. |.. ..+ +.++++|+.. +||++ | |.+...+.. ||++.+=|-+
T Consensus 18 ~~~~~~~~~gtdai~vGGS~-~vt~~~~~~~v~~ik~~~-lPvil-f---p~~~~~i~~~aDa~l~~svl 81 (223)
T TIGR01768 18 EIAKAAAESGTDAILIGGSQ-GVTYEKTDTLIEALRRYG-LPIIL-F---PSNPTNVSRDADALFFPSVL 81 (223)
T ss_pred HHHHHHHhcCCCEEEEcCCC-cccHHHHHHHHHHHhccC-CCEEE-e---CCCccccCcCCCEEEEEEee
Confidence 34454455799999999885 332 234 5678999866 99998 3 334444445 9999887755
No 447
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=72.59 E-value=17 Score=32.75 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=41.4
Q ss_pred cHHHHHHHhhh-ccccEEEecCCCCCCCC--C----HHHHHHHHhcC--CCCEEEecCC-ChHhH-H---Hhhc--CCEE
Q psy9039 174 DITETAKAASF-FLSDGLIITGNATGDPA--D----VSQLMSVKNAV--DLPILIGSGV-TSDNV-E---HYMT--ADAL 237 (251)
Q Consensus 174 ~i~~~a~~a~~-~~~D~v~VTG~~~g~~~--~----~~~l~~vr~~~--~~PV~vG~GI-~~~~v-~---~~~~--ADGv 237 (251)
.+++..+.... .|++++.+-|+. |+.. + .+.++.+++.+ ++||++|-|- +.+++ + .+.+ ||++
T Consensus 25 ~~~~li~~l~~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 25 GLRRLVRFNIEKQGIDGLYVGGST-GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAI 103 (293)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc-cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34444444444 699999998874 4322 2 13345555555 5899999987 44433 3 2223 9999
Q ss_pred EEece
Q psy9039 238 IIGSH 242 (251)
Q Consensus 238 IVGS~ 242 (251)
.+-.-
T Consensus 104 ~v~~P 108 (293)
T PRK04147 104 SAVTP 108 (293)
T ss_pred EEeCC
Confidence 88653
No 448
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=72.35 E-value=6.3 Score=35.79 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=32.5
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
++.+++.++++.++|+ |+|.++ . +.. ...++++.+.++ .|+-+|+...
T Consensus 160 ~deAI~Ra~ay~~AGA-D~vfi~------g-------~~~----~e~i~~~~~~i~--~Pl~~n~~~~ 207 (285)
T TIGR02317 160 LDAAIERAKAYVEAGA-DMIFPE------A-------LTS----LEEFRQFAKAVK--VPLLANMTEF 207 (285)
T ss_pred HHHHHHHHHHHHHcCC-CEEEeC------C-------CCC----HHHHHHHHHhcC--CCEEEEeccC
Confidence 4667778899999999 999762 1 111 223455666667 6998887643
No 449
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=72.20 E-value=4.9 Score=37.25 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCCcCCCCccEEEEeecCC-CC-cccc-------CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMHD-VP-YVLE-------AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~-~P-f~~p-------~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a 113 (251)
+++.++|+ |+|.+.|-.- .. ...+ .-.|+.+-....+.++++++..+..+|+..+.=...+...... ..
T Consensus 232 ~~l~~~Ga-dgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~-l~ 309 (344)
T PRK05286 232 DLALEHGI-DGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEK-IR 309 (344)
T ss_pred HHHHHhCC-cEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH-HH
Confidence 45678999 9999988431 00 0000 0135655555667888998887311686655433332333333 23
Q ss_pred cCccceec
Q psy9039 114 AGLDFIRA 121 (251)
Q Consensus 114 ~g~~Fir~ 121 (251)
.|++.+.+
T Consensus 310 aGAd~V~v 317 (344)
T PRK05286 310 AGASLVQI 317 (344)
T ss_pred cCCCHHHH
Confidence 67777775
No 450
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=71.92 E-value=14 Score=37.03 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH--------HHHHHHHhCCCCccEEEEE-------
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR--------LCAEIRKVLPPSVPVGVQI------- 99 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~--------~i~~vr~~~~~~~P~Gvn~------- 99 (251)
.+..+.-+.++.+.|+ ..+++ -|..+-.+..| -++.+|+..+.+ |+...+
T Consensus 25 t~d~~~ia~~~d~~g~-~siE~-------------~gGatfd~~~rfl~edpwerl~~~r~~~pnt-~lqmL~Rg~N~vG 89 (596)
T PRK14042 25 TEDMLPICNKMDDVGF-WAMEV-------------WGGATFDACLRFLKEDPWSRLRQLRQALPNT-QLSMLLRGQNLLG 89 (596)
T ss_pred HHHHHHHHHHHHhcCC-CEEEe-------------eCCcccceeecccCCCHHHHHHHHHHhCCCC-ceEEEeccccccc
Q ss_pred eeCCh----HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh--hhhHhhccCCCCCCcc
Q psy9039 100 LSGCN----KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF--TDIKKKHSSHAITADV 173 (251)
Q Consensus 100 ~~N~~----~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~--a~v~~k~~~~~~~~~~ 173 (251)
|.|-+ ...+..|...|.+++|+.-.+. .........+..++.|. .+... .-..++| +.+
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln--------d~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~------t~e 154 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALN--------DARNLKVAIDAIKSHKK-HAQGAICYTTSPVH------TLD 154 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCc--------chHHHHHHHHHHHHcCC-EEEEEEEecCCCCC------CHH
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcCCCCE
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAVDLPI 217 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~~~PV 217 (251)
...+.++.....|+|.+++-=..--..|.. ++++.+|+..++||
T Consensus 155 ~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi 200 (596)
T PRK14042 155 NFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPV 200 (596)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEE
No 451
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=71.91 E-value=12 Score=32.34 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcC--CCCEEEecCC-ChHhHHHhhc
Q psy9039 175 ITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAV--DLPILIGSGV-TSDNVEHYMT 233 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~~~~ 233 (251)
+....+.+...|+|.+=+ ||...+ ..+.+.++.+++.. .+||-+.||| |.+++.+++.
T Consensus 134 i~~a~~ia~eaGADfvKTsTGf~~~-gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~ 195 (211)
T TIGR00126 134 IRKACEICIDAGADFVKTSTGFGAG-GATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIE 195 (211)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCC-CCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH
Confidence 333334444579999855 676533 24455555555544 6999999999 6888888886
No 452
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=71.82 E-value=26 Score=32.42 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=64.8
Q ss_pred HHHhhCCCCcCCCCccEEEEeecCCCCccccCCCc--hHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh---HHHHHHH
Q psy9039 37 EIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESG--PEITANMTRLCAEIRKVLPPSVPVGVQILSGCN---KAALATA 111 (251)
Q Consensus 37 ~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~g--p~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~---~~~~~ia 111 (251)
.+.+++.. .+-|+ |.+-+|=-..+-|......| --+++...+..++....++ .|+.+.----+. ...+.+|
T Consensus 187 ~a~kefs~-~~~gv-DVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~~~--~P~i~LSaGV~~~~F~~~l~~A 262 (324)
T PRK12399 187 EAMKVFSK-PRFGV-DVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAATH--LPYIYLSAGVSAELFQETLVFA 262 (324)
T ss_pred HHHHHhcc-CCCCC-cEEEEecccccccccccCcccccccHHHHHHHHHHHhhccC--CCEEEEcCCCCHHHHHHHHHHH
Confidence 34444432 35899 99998733333333332122 0133334444555555566 798776432221 4568899
Q ss_pred HHcCccceecccccccccCCCc---eeecCcchhHHHHHhcCCCcchhhhhhHhhccCC
Q psy9039 112 QAAGLDFIRAESFVFGHMADEG---LMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSH 167 (251)
Q Consensus 112 ~a~g~~Fir~~~~~~~~~~~~G---li~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~ 167 (251)
...|+.|--. .||-..--++ .+.++......+-+..|.+.+.-+..|..+...|
T Consensus 263 ~~aGa~fsGv--L~GRAtW~~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~vl~~ta~~ 319 (324)
T PRK12399 263 HEAGAKFNGV--LCGRATWAGSVKVYIEQGEAAAREWLRTEGFENIDELNKVLDKTATS 319 (324)
T ss_pred HHcCCCcceE--EeehhhhHhhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 9999988332 2332111122 2234544455555555666666666665554444
No 453
>PLN02591 tryptophan synthase
Probab=71.67 E-value=22 Score=31.58 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir 120 (251)
+.+.++|+ ||++| -|+|+.. ........++. . +.....+--+.+...+.........|+-
T Consensus 100 ~~~~~aGv-~Gvii---pDLP~ee-----------~~~~~~~~~~~-g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY 159 (250)
T PLN02591 100 ATIKEAGV-HGLVV---PDLPLEE-----------TEALRAEAAKN-G--IELVLLTTPTTPTERMKAIAEASEGFVY 159 (250)
T ss_pred HHHHHcCC-CEEEe---CCCCHHH-----------HHHHHHHHHHc-C--CeEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 34568999 99997 6777732 34444555443 3 3444443233323333332333346775
No 454
>PRK03094 hypothetical protein; Provisional
Probab=71.51 E-value=6 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=31.0
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCCChHhHHHhh
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYM 232 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~ 232 (251)
.++|++++||..+.... +.. ..+..||+=+.|.|++++.+.+
T Consensus 34 ~~~Da~VitG~d~n~mg----i~d--~~t~~pVI~A~G~TaeEI~~~v 75 (80)
T PRK03094 34 QGCDCCVVTGQDSNVMG----IAD--TSTKGSVITASGLTADEICQQV 75 (80)
T ss_pred CCcCEEEEeCCCcceec----ccc--cccCCcEEEcCCCCHHHHHHHH
Confidence 46999999998665432 211 1247999999999999887654
No 455
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=71.27 E-value=35 Score=30.47 Aligned_cols=170 Identities=12% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.+.+.|+ |||.+- ..+-.++-. ..+.. ++++.+.+.....+|+.+.+-.+....++..| ...|++.
T Consensus 26 ~~l~~~Gv-~Gi~~~GstGE~~~Ls----~~Er~----~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ 96 (285)
T TIGR00674 26 DFQIENGT-DAIVVVGTTGESPTLS----HEEHK----KVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADG 96 (285)
T ss_pred HHHHHcCC-CEEEECccCcccccCC----HHHHH----HHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCE
Confidence 55678999 999862 222222211 22222 23344443333225766666554433333333 2344444
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcC-CCcchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIG-ADNVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~-~~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+-. ...-..-+..+++.+|-+.+- .-++.++ ++.-...|.. .+.+.+.+-++.. . |.|-+
T Consensus 97 v~v--------~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~-----l~~~~l~~L~~~~--~---v~giK 158 (285)
T TIGR00674 97 FLV--------VTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVS-----LYPETVKRLAEEP--N---IVAIK 158 (285)
T ss_pred EEE--------cCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCC-----CCHHHHHHHHcCC--C---EEEEE
Confidence 332 111112223456666555542 1123332 2221122333 2333333333321 1 33433
Q ss_pred CCCCCCHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
.. ..+...+.++++.. ++.|+.|.. .--+..+.. +||.+.|++
T Consensus 159 ~s-~~d~~~~~~l~~~~~~~~~v~~G~d--~~~~~~~~~G~~G~i~~~~ 204 (285)
T TIGR00674 159 EA-TGNLERISEIKAIAPDDFVVLSGDD--ALTLPMMALGGKGVISVTA 204 (285)
T ss_pred eC-CCCHHHHHHHHHhcCCCeEEEECch--HHHHHHHHcCCCEEEehHH
Confidence 21 23455666666554 355555544 222333334 999998865
No 456
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.11 E-value=67 Score=28.80 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=74.2
Q ss_pred CCCcC-CCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVP-VGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~-~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.+.+ .|+ |||.+-=-.|=-++- +.+--.++++.+++..+..+|+.+.+-.+....+...+ ...|++-
T Consensus 31 ~~l~~~~Gv-~gi~v~GstGE~~~L-------s~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~ 102 (293)
T PRK04147 31 RFNIEKQGI-DGLYVGGSTGEAFLL-------STEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDA 102 (293)
T ss_pred HHHHhcCCC-CEEEECCCccccccC-------CHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCE
Confidence 66778 999 999863111111221 11222234444444444335777776555433443332 2233333
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhcC-CCcchhh-hhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCC
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQIG-ADNVLVF-TDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNA 196 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~-~~~i~i~-a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~ 196 (251)
+-+ ...-...+..+++.+|.+.+- .-+..++ .++-...|.. .+.+.+.+.++.- -|.|-+
T Consensus 103 v~v--------~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~-----l~~~~l~~L~~~p-----nvvgiK 164 (293)
T PRK04147 103 ISA--------VTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVN-----LSLDQFNELFTLP-----KVIGVK 164 (293)
T ss_pred EEE--------eCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccC-----CCHHHHHHHhcCC-----CEEEEE
Confidence 322 111122233456666555542 1122332 2221122322 2333333333221 134433
Q ss_pred CCCCCCHHHHHHHHhcC-CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 197 TGDPADVSQLMSVKNAV-DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 197 ~g~~~~~~~l~~vr~~~-~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
.. ..+...+.++++.. +.-|+.|. ..--+..+.. +||++.|++
T Consensus 165 ~s-~~d~~~~~~~~~~~~~~~v~~G~--d~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 165 QT-AGDLYQLERIRKAFPDKLIYNGF--DEMFASGLLAGADGAIGSTY 209 (293)
T ss_pred eC-CCCHHHHHHHHHhCCCCEEEEee--hHHHHHHHHcCCCEEEechh
Confidence 22 23455566555443 45455443 2222333344 999997754
No 457
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=71.08 E-value=14 Score=33.12 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=50.1
Q ss_pred cccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEE
Q psy9039 172 DVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALI 238 (251)
Q Consensus 172 ~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvI 238 (251)
+....++|+.-+.+|++++-|.=...-...+.+.|+.+|+.+++||+.===| ++.|+.+.-. ||.+-
T Consensus 65 d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 65 DFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred cCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 4556667666666789999665433345567899999999999999987666 8999887764 88764
No 458
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=70.74 E-value=53 Score=28.35 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=31.8
Q ss_pred CcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHH---HHHhcCCCCEEEecCC
Q psy9039 152 DNVLVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLM---SVKNAVDLPILIGSGV 223 (251)
Q Consensus 152 ~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~---~vr~~~~~PV~vG~GI 223 (251)
...+++..-|.-.+.| +...+.+..+.+...|+|.+=+............++. ++++..+.|++ +.+.
T Consensus 117 ~~~kvI~S~H~f~~tp---~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i-~~~M 187 (228)
T TIGR01093 117 GGTKIIMSYHDFQKTP---SWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLI-TMSM 187 (228)
T ss_pred CCCEEEEeccCCCCCC---CHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEE-EEeC
Confidence 3567764333221222 2233444555555678999844443322222223332 33334467866 5555
No 459
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=70.48 E-value=3.3 Score=38.71 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=76.7
Q ss_pred hhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 40 KVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
++++.|+++|+ |.|-+ +-| +..-.+++..+.++|++. ++ +|+...+.+|. ..++..+.+ ++=
T Consensus 35 ~QI~~L~~aGc-eivRv--------avp---~~~~a~al~~I~~~l~~~g~~--iPlVADIHFd~-~lAl~a~~~--v~k 97 (359)
T PF04551_consen 35 AQIKRLEEAGC-EIVRV--------AVP---DMEAAEALKEIKKRLRALGSP--IPLVADIHFDY-RLALEAIEA--VDK 97 (359)
T ss_dssp HHHHHHHHCT--SEEEE--------EE----SHHHHHHHHHHHHHHHCTT-S--S-EEEEESTTC-HHHHHHHHC---SE
T ss_pred HHHHHHHHcCC-CEEEE--------cCC---CHHHHHHHHHHHHhhccCCCC--CCeeeecCCCH-HHHHHHHHH--hCe
Confidence 33388999999 99953 322 556666777777776665 55 79999999986 444444322 788
Q ss_pred eeccccccccc----CCCceeecCcchhHHHHHhcCCCcchh-------hhhhHhhccCCCCCCcccHHHHH-HHhh---
Q psy9039 119 IRAESFVFGHM----ADEGLMNAQAGPLLRYRKQIGADNVLV-------FTDIKKKHSSHAITADVDITETA-KAAS--- 183 (251)
Q Consensus 119 ir~~~~~~~~~----~~~Gli~~da~e~~~~r~~l~~~~i~i-------~a~v~~k~~~~~~~~~~~i~~~a-~~a~--- 183 (251)
+|.|. |... ...|-+.....++.+.+++.+. .|.+ =.++..|++ + + .+.+.+.| +.++
T Consensus 98 iRINP--GNi~~~~~~~~g~~~~~~~~vv~~ake~~i-pIRIGvN~GSL~~~~~~ky~-~--t-~~amvesA~~~~~~le 170 (359)
T PF04551_consen 98 IRINP--GNIVDEFQEELGSIREKVKEVVEAAKERGI-PIRIGVNSGSLEKDILEKYG-P--T-PEAMVESALEHVRILE 170 (359)
T ss_dssp EEE-T--TTSS----SS-SS-HHHHHHHHHHHHHHT--EEEEEEEGGGS-HHHHHHHC-H--H-HHHHHHHHHHHHHHHH
T ss_pred EEECC--CcccccccccccchHHHHHHHHHHHHHCCC-CEEEecccccCcHHHHhhcc-c--h-HHHHHHHHHHHHHHHH
Confidence 88762 2110 0001112234556666666654 2322 113333331 1 1 11222222 1222
Q ss_pred hccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEe
Q psy9039 184 FFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIG 220 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG 220 (251)
..+-+-+++|=..+......+..+.+.+.++.|+-+|
T Consensus 171 ~~~f~~iviSlKsSdv~~~i~ayr~la~~~dyPLHLG 207 (359)
T PF04551_consen 171 ELGFDDIVISLKSSDVPETIEAYRLLAERMDYPLHLG 207 (359)
T ss_dssp HCT-GGEEEEEEBSSHHHHHHHHHHHHHH--S-EEEE
T ss_pred HCCCCcEEEEEEeCChHHHHHHHHHHHHhcCCCeEEe
Confidence 1345666676555443333455666777789999885
No 460
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=70.47 E-value=34 Score=34.32 Aligned_cols=70 Identities=17% Similarity=0.119 Sum_probs=48.4
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHHc
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQAA 114 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a~ 114 (251)
+..+++++.|+++|+ |.|-+ .- .+..-.+++..+.+++|+. ++ +|+...+-+|+ ..++..+.+
T Consensus 41 ~atv~Qi~~l~~aGc-eiVRv--------tv---~~~~~a~~l~~I~~~l~~~G~~--iPLVADIHF~~-~~A~~a~~~- 104 (611)
T PRK02048 41 EACVAQAKRIIDAGG-EYVRL--------TT---QGVREAENLMNINIGLRSQGYM--VPLVADVHFNP-KVADVAAQY- 104 (611)
T ss_pred HHHHHHHHHHHHcCC-CEEEE--------cC---CCHHHHHhHHHHHHHHhhcCCC--CCEEEecCCCc-HHHHHHHHh-
Confidence 445555588999999 99964 22 2555666777777777655 45 79999999987 445554433
Q ss_pred Cccceecc
Q psy9039 115 GLDFIRAE 122 (251)
Q Consensus 115 g~~Fir~~ 122 (251)
++=+|+|
T Consensus 105 -v~kiRIN 111 (611)
T PRK02048 105 -AEKVRIN 111 (611)
T ss_pred -hCCEEEC
Confidence 6778876
No 461
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.47 E-value=78 Score=28.30 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=21.8
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
+...+.++++.. +..|+.|.. .--...+.. +||.+.|++
T Consensus 167 d~~~~~~~~~~~~~~~~v~~G~d--~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 167 DLYDLERIRAASPEDKLVLNGFD--EMLLSALALGADGAIGSTY 208 (288)
T ss_pred CHHHHHHHHHhCCCCcEEEEech--HHHHHHHHcCCCEEEeChh
Confidence 455555665443 566665553 222233344 999988764
No 462
>PLN02417 dihydrodipicolinate synthase
Probab=70.13 E-value=23 Score=31.66 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCCcCCCCccEEEEe-ecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHH---HHcCccc
Q psy9039 43 PPSVPVGVQHGVIVE-NMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATA---QAAGLDF 118 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ie-N~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia---~a~g~~F 118 (251)
+.+.+.|+ |||.+- +.+-.+. .+.+--.++++.+.+.....+|+.+.+-.|....+...+ ...|++.
T Consensus 29 ~~l~~~Gv-~Gi~~~GstGE~~~--------ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gada 99 (280)
T PLN02417 29 NMQIENGA-EGLIVGGTTGEGQL--------MSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHA 99 (280)
T ss_pred HHHHHcCC-CEEEECccCcchhh--------CCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCE
Confidence 66778999 999862 1111211 111222234455444444336888877766544444443 3344443
Q ss_pred eecccccccccCCCceeecCcchhHHHHHhc
Q psy9039 119 IRAESFVFGHMADEGLMNAQAGPLLRYRKQI 149 (251)
Q Consensus 119 ir~~~~~~~~~~~~Gli~~da~e~~~~r~~l 149 (251)
+-. ...-...+..+++.+|-+.+
T Consensus 100 v~~--------~~P~y~~~~~~~i~~~f~~v 122 (280)
T PLN02417 100 ALH--------INPYYGKTSQEGLIKHFETV 122 (280)
T ss_pred EEE--------cCCccCCCCHHHHHHHHHHH
Confidence 332 11122233456676666555
No 463
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=70.07 E-value=59 Score=30.51 Aligned_cols=128 Identities=17% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHH
Q psy9039 31 MTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALAT 110 (251)
Q Consensus 31 ~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~i 110 (251)
++.+.+....=+++.+++|+ |+|.|-|-+.-..+.. .-..-...-+.++++++++.... .|+-.++ .|. ..-+.-
T Consensus 184 l~kltd~~i~Yl~~qi~aGA-davqifDsW~g~l~~~-~~~~f~~~~~~~i~~~vk~~~~~-~pii~f~-~ga-~~~l~~ 258 (352)
T COG0407 184 LDKLTDAVIEYLKAQIEAGA-DAVQIFDSWAGVLSMI-DYDEFVLPYMKRIVREVKEVKGG-VPVIHFC-KGA-GHLLED 258 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CEEEeeccccccCCcc-cHHHHhhhHHHHHHHHHHHhCCC-CcEEEEC-CCc-HHHHHH
Confidence 56677777778888899999 9999976653322221 11223344566788999876542 2544443 232 112222
Q ss_pred HHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHh
Q psy9039 111 AQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAA 182 (251)
Q Consensus 111 a~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a 182 (251)
-...|.+.+... +.. + +...++.++. .+.+...+.|- -+..+.+.+++.++..
T Consensus 259 m~~~g~d~l~vd------w~v------~---l~~a~~~~~~-~~~lqGNldP~---lL~~~~~~i~~~~~~i 311 (352)
T COG0407 259 MAKTGFDVLGVD------WRV------D---LKEAKKRLGD-KVALQGNLDPA---LLYAPPEAIKEEVKRI 311 (352)
T ss_pred HHhcCCcEEeec------ccc------C---HHHHHHHhCC-CceEEeccChH---hhcCCHHHHHHHHHHH
Confidence 122334443321 111 1 5556666654 45666666652 1223335555555544
No 464
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=70.01 E-value=81 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=23.0
Q ss_pred CHHHHHHHHhcC--CCCEEEecCCChHhHHHhh-c-CCEEEEece
Q psy9039 202 DVSQLMSVKNAV--DLPILIGSGVTSDNVEHYM-T-ADALIIGSH 242 (251)
Q Consensus 202 ~~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~-~-ADGvIVGS~ 242 (251)
+...+.++++.. +..|+.|.+-....+...+ . |+|+|.|.+
T Consensus 162 d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~is~~~ 206 (289)
T cd00951 162 DIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTYSSAVF 206 (289)
T ss_pred CHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEEEechh
Confidence 566666665554 3445544432334444444 4 999997753
No 465
>PLN02417 dihydrodipicolinate synthase
Probab=69.88 E-value=19 Score=32.28 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=35.7
Q ss_pred hccccEEEecCCCCCCCC--CH----HHHHHHHhcC--CCCEEEecCC-ChHhHHH----hhc--CCEEEEec
Q psy9039 184 FFLSDGLIITGNATGDPA--DV----SQLMSVKNAV--DLPILIGSGV-TSDNVEH----YMT--ADALIIGS 241 (251)
Q Consensus 184 ~~~~D~v~VTG~~~g~~~--~~----~~l~~vr~~~--~~PV~vG~GI-~~~~v~~----~~~--ADGvIVGS 241 (251)
..|++++++-|+. |+.. +. +.++.+++.+ .+||++|-|- +.+++.+ +.+ ||++.+-.
T Consensus 33 ~~Gv~Gi~~~Gst-GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 33 ENGAEGLIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HcCCCEEEECccC-cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3699999888774 3322 11 3344455554 5899999997 4444332 223 99998864
No 466
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=69.16 E-value=7.4 Score=37.46 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=39.0
Q ss_pred cccEEEecCCCCCCCCCHHHHHHHHhcC-CCCEEEecCC-C--hHhHHHhhc-CCEEEEec
Q psy9039 186 LSDGLIITGNATGDPADVSQLMSVKNAV-DLPILIGSGV-T--SDNVEHYMT-ADALIIGS 241 (251)
Q Consensus 186 ~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~~PV~vG~GI-~--~~~v~~~~~-ADGvIVGS 241 (251)
..|.+++|..........+..+.+|+.. +++|++||.- | ++.+-+... +|.++.|=
T Consensus 68 ~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GE 128 (472)
T TIGR03471 68 DYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRRE 128 (472)
T ss_pred CCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCc
Confidence 4799999876444444456677888775 7899999876 4 565544334 89888873
No 467
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=69.01 E-value=85 Score=27.99 Aligned_cols=179 Identities=17% Similarity=0.166 Sum_probs=97.1
Q ss_pred CCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCC---CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee
Q psy9039 25 PEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD---VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS 101 (251)
Q Consensus 25 P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~---~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~ 101 (251)
|.--.|.+.+.+-|.+ +.+.|+ ..+.=- -++ -|||-- |+=. + -.+++++.++++. +|+.--++-
T Consensus 22 PC~vEs~e~~~~~a~~----~~~~g~-~~~r~g-~~kpRts~~sf~---G~G~-~-gl~~L~~~~~~~G--l~~~Tev~d 88 (250)
T PRK13397 22 PCSIESYDHIRLAASS----AKKLGY-NYFRGG-AYKPRTSAASFQ---GLGL-Q-GIRYLHEVCQEFG--LLSVSEIMS 88 (250)
T ss_pred cCccCCHHHHHHHHHH----HHHcCC-CEEEec-ccCCCCCCcccC---CCCH-H-HHHHHHHHHHHcC--CCEEEeeCC
Confidence 6666677777776666 556777 666300 011 233332 3322 2 4567778888888 787776553
Q ss_pred CChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHH
Q psy9039 102 GCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKA 181 (251)
Q Consensus 102 N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~ 181 (251)
..++..+.. .++++++.++.- .-.+++++..+.+. .|-+ |.|.- .++++....
T Consensus 89 ---~~~v~~~~e-~vdilqIgs~~~-----------~n~~LL~~va~tgk-PVil------k~G~~-----~t~~e~~~A 141 (250)
T PRK13397 89 ---ERQLEEAYD-YLDVIQVGARNM-----------QNFEFLKTLSHIDK-PILF------KRGLM-----ATIEEYLGA 141 (250)
T ss_pred ---HHHHHHHHh-cCCEEEECcccc-----------cCHHHHHHHHccCC-eEEE------eCCCC-----CCHHHHHHH
Confidence 455555544 478888743221 12345555555543 2222 43311 245555555
Q ss_pred hhh---ccccEEEec--CCCCCC-----CCCHHHHHHHHhcCCCCEEEecC----CC---hHhHHHhh-c-CCEEEEece
Q psy9039 182 ASF---FLSDGLIIT--GNATGD-----PADVSQLMSVKNAVDLPILIGSG----VT---SDNVEHYM-T-ADALIIGSH 242 (251)
Q Consensus 182 a~~---~~~D~v~VT--G~~~g~-----~~~~~~l~~vr~~~~~PV~vG~G----I~---~~~v~~~~-~-ADGvIVGS~ 242 (251)
++. .|..-++++ |.++-. ..++..+..+|+.+.+||+++.. .+ +.-..... . |||+++=+.
T Consensus 142 ~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 142 LSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred HHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 542 465434333 442211 12356678888888999999844 31 11222222 3 999998776
Q ss_pred E
Q psy9039 243 F 243 (251)
Q Consensus 243 ~ 243 (251)
+
T Consensus 222 ~ 222 (250)
T PRK13397 222 P 222 (250)
T ss_pred C
Confidence 5
No 468
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=69.00 E-value=29 Score=33.79 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=78.1
Q ss_pred CCCCcCCCCccEEEEeecCCCCccc---cCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee-------C--ChH--HH
Q psy9039 42 LPPSVPVGVQHGVIVENMHDVPYVL---EAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS-------G--CNK--AA 107 (251)
Q Consensus 42 a~~l~~~Gv~D~i~ieN~~~~Pf~~---p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~-------N--~~~--~~ 107 (251)
+.+|.+.|+ +.|++- +|.-|.- -...+| -.-++++|+..+.+ |+...+-- | +.+ .-
T Consensus 41 a~~ld~~G~-~siE~w--GGAtfd~~~rfl~edp------werlr~~r~~~~nt-~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 41 LTILDKIGY-YSLECW--GGATFDACIRFLNEDP------WERLRTLKKGLPNT-RLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred HHHHHhcCC-CEEEec--CCcchhhhhcccCCCH------HHHHHHHHHhCCCC-ceeeeeccccccCccCCcchHHHHH
Confidence 355677899 999852 2222210 000111 12457777777754 76633321 1 111 12
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhh-hhHhhccCCCCCCcccHHHHHHHhhhcc
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFT-DIKKKHSSHAITADVDITETAKAASFFL 186 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a-~v~~k~~~~~~~~~~~i~~~a~~a~~~~ 186 (251)
+..|...|.+.+|+.. .+.+ ........+..++.|..-...++ ...++| +..-..+.++.+...|
T Consensus 111 v~~a~~~Gidi~Rifd----~lnd----~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~------t~~y~~~~a~~l~~~G 176 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD----ALND----PRNIQQALRAVKKTGKEAQLCIAYTTSPVH------TLNYYLSLVKELVEMG 176 (468)
T ss_pred HHHHHHCCCCEEEEcc----cCCC----HHHHHHHHHHHHHcCCEEEEEEEEEeCCcC------cHHHHHHHHHHHHHcC
Confidence 5556677788888631 1111 12245556677777752111111 111111 1122445555555679
Q ss_pred ccEEEecCCCCCCCC-CH-HHHHHHHhcCCCCEEE
Q psy9039 187 SDGLIITGNATGDPA-DV-SQLMSVKNAVDLPILI 219 (251)
Q Consensus 187 ~D~v~VTG~~~g~~~-~~-~~l~~vr~~~~~PV~v 219 (251)
+|.+++.=+.--..| .. ++++.+|+..++||-+
T Consensus 177 ad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~ 211 (468)
T PRK12581 177 ADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIV 211 (468)
T ss_pred CCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEE
Confidence 999988655322222 23 6788888877888644
No 469
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=68.88 E-value=16 Score=35.60 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=48.0
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~~~ia~a~g~~Fir 120 (251)
+.+++.|+ |.|-|... .|-.+...+.++++++|+..+ +|+++-+--|.+ .+.+-.|...|++.+.
T Consensus 170 ~~l~~~Ga-d~I~IkDt----------aG~l~P~~v~~Lv~alk~~~~--~pi~~H~Hnt~GlA~An~laAieAGad~vD 236 (468)
T PRK12581 170 KELVEMGA-DSICIKDM----------AGILTPKAAKELVSGIKAMTN--LPLIVHTHATSGISQMTYLAAVEAGADRID 236 (468)
T ss_pred HHHHHcCC-CEEEECCC----------CCCcCHHHHHHHHHHHHhccC--CeEEEEeCCCCccHHHHHHHHHHcCCCEEE
Confidence 55678899 99976444 455566668888999988766 799999876653 3444455668888877
Q ss_pred cc
Q psy9039 121 AE 122 (251)
Q Consensus 121 ~~ 122 (251)
.+
T Consensus 237 ~a 238 (468)
T PRK12581 237 TA 238 (468)
T ss_pred ee
Confidence 53
No 470
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=68.88 E-value=12 Score=40.57 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCH-HHHHHHHhcC-CCCEEEecCC-ChHhHHH
Q psy9039 169 ITADVDITETAKAASFFLSDGLIITGNATGDPADV-SQLMSVKNAV-DLPILIGSGV-TSDNVEH 230 (251)
Q Consensus 169 ~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~-~~l~~vr~~~-~~PV~vG~GI-~~~~v~~ 230 (251)
...+++.+++.+.+....+|.+++|+-.+.....+ +.++++++.. ++||++||.. |.+.++.
T Consensus 766 LG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~~v~v~vGGa~~s~~~~~~ 830 (1178)
T TIGR02082 766 LGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLLIGGAATSKTHTAV 830 (1178)
T ss_pred CCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCCCceEEEeccccchhHHHh
Confidence 45678889998888888999999999866544444 5577787764 7999999998 5666554
No 471
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=68.84 E-value=34 Score=34.94 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=50.2
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHh-CCCCccEEEEEeeCChHHHHHHHHH
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKV-LPPSVPVGVQILSGCNKAALATAQA 113 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~-~~~~~P~Gvn~~~N~~~~~~~ia~a 113 (251)
++..+++++.|+++|+ |.|-+ .- .+..-.+++..+-+++|+. ++ +|+...+-+|+ ..++..+.+
T Consensus 109 ~eatv~Qi~~l~~aGc-eiVRv--------tv---~~~~~A~al~~I~~~L~~~g~~--iPLVADIHF~~-~~Al~a~~~ 173 (733)
T PLN02925 109 VEATVDQVMRIADKGA-DIVRI--------TV---QGKKEADACFEIKNTLVQKGYN--IPLVADIHFAP-SVALRVAEC 173 (733)
T ss_pred HHHHHHHHHHHHHcCC-CEEEE--------cC---CCHHHHHhHHHHHHHHhhcCCC--CCEEEecCCCH-HHHHHHHHh
Confidence 4555666699999999 99964 22 3566677777777777765 45 79999999987 455544333
Q ss_pred cCccceecc
Q psy9039 114 AGLDFIRAE 122 (251)
Q Consensus 114 ~g~~Fir~~ 122 (251)
++=+|+|
T Consensus 174 --vdkiRIN 180 (733)
T PLN02925 174 --FDKIRVN 180 (733)
T ss_pred --cCCeEEC
Confidence 6778876
No 472
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=68.57 E-value=11 Score=34.60 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=42.9
Q ss_pred CCCcCCCCccEEEEeecC-CCCc-----ccc---CCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHH
Q psy9039 43 PPSVPVGVQHGVIVENMH-DVPY-----VLE---AESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQA 113 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~-~~Pf-----~~p---~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a 113 (251)
++++++|+ |+|.+.|-. +... ... .-.|+.+.....+.++++|+..+..+|+..+.=...+...... ..
T Consensus 223 ~~l~~aGa-d~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~-l~ 300 (327)
T cd04738 223 DVALEHGV-DGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEK-IR 300 (327)
T ss_pred HHHHHcCC-cEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHH-HH
Confidence 45678999 999998832 1111 000 0134555445557788888887311686655433332333333 33
Q ss_pred cCccceec
Q psy9039 114 AGLDFIRA 121 (251)
Q Consensus 114 ~g~~Fir~ 121 (251)
.|++++.+
T Consensus 301 aGAd~V~v 308 (327)
T cd04738 301 AGASLVQL 308 (327)
T ss_pred cCCCHHhc
Confidence 67787775
No 473
>PRK06852 aldolase; Validated
Probab=68.51 E-value=25 Score=32.24 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=55.4
Q ss_pred cchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcc---cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcC-C
Q psy9039 139 AGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADV---DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAV-D 214 (251)
Q Consensus 139 a~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~---~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~-~ 214 (251)
..++.+.++++|.+-+.+ +.++ |-.. ..+. .+...++-+..-|+|.+=+-=.......+.+.++++.+.+ .
T Consensus 156 l~~v~~ea~~~GlPll~~---~ypr-G~~i-~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLW---IYPR-GKAV-KDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHHHHhCCcEEEE---eecc-Cccc-CCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCC
Confidence 556666777777643332 2222 1111 1222 2333333333469999855221111224567788888888 8
Q ss_pred CCEEEecCCC--hHh----HHHhh--c-CCEEEEeceEe
Q psy9039 215 LPILIGSGVT--SDN----VEHYM--T-ADALIIGSHFK 244 (251)
Q Consensus 215 ~PV~vG~GI~--~~~----v~~~~--~-ADGvIVGS~~~ 244 (251)
+||++.||=+ .+. +.+.+ . |.|+++|--+-
T Consensus 231 vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 231 TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 9999988883 322 33332 3 78999985443
No 474
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=68.38 E-value=12 Score=33.89 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=35.7
Q ss_pred hhhccccEEEec-CCCCCC-----CC--CHHHHHHHHhcC-CCCEEE--ecCCChHhHHHhhc
Q psy9039 182 ASFFLSDGLIIT-GNATGD-----PA--DVSQLMSVKNAV-DLPILI--GSGVTSDNVEHYMT 233 (251)
Q Consensus 182 a~~~~~D~v~VT-G~~~g~-----~~--~~~~l~~vr~~~-~~PV~v--G~GI~~~~v~~~~~ 233 (251)
.+.-++|.+-|+ |...|. .+ +.++|+++++.+ ++|+++ |+|++.+++++..+
T Consensus 164 v~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~ 226 (287)
T PF01116_consen 164 VEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIK 226 (287)
T ss_dssp HHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHH
T ss_pred HHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHH
Confidence 334589999774 543332 23 368899999999 999998 55566788888774
No 475
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=68.04 E-value=25 Score=31.38 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=45.9
Q ss_pred HHHhhhccccEEEec-C-CCCCCCCCHHHHHHHHhcCCCCEEE-----ecC--CChHhHH-------Hhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIIT-G-NATGDPADVSQLMSVKNAVDLPILI-----GSG--VTSDNVE-------HYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VT-G-~~~g~~~~~~~l~~vr~~~~~PV~v-----G~G--I~~~~v~-------~~~~--ADGvIVG 240 (251)
+..|...|+|.+-+- . ..-|..|+...++.+++.+++||.+ +++ -|.+.+. .+.+ +||+++|
T Consensus 14 a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G 93 (248)
T PRK11572 14 ALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTG 93 (248)
T ss_pred HHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 455566788888442 2 2335567789999999999999987 233 3665544 3333 9999999
Q ss_pred ceEeecCee
Q psy9039 241 SHFKQGGRT 249 (251)
Q Consensus 241 S~~~~~g~~ 249 (251)
- |..||.+
T Consensus 94 ~-L~~dg~v 101 (248)
T PRK11572 94 V-LDVDGHV 101 (248)
T ss_pred e-ECCCCCc
Confidence 4 4455543
No 476
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=67.98 E-value=14 Score=32.91 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=54.2
Q ss_pred CcchhhhhhHhhccCCC---CCCcccHHHHHHHhhhccccEEEe-cCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChH
Q psy9039 152 DNVLVFTDIKKKHSSHA---ITADVDITETAKAASFFLSDGLII-TGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSD 226 (251)
Q Consensus 152 ~~i~i~a~v~~k~~~~~---~~~~~~i~~~a~~a~~~~~D~v~V-TG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~ 226 (251)
..+.+++++.++. |. ...+....++++.-+.+|++++-| |-.+ -...+.+.+..+|+.+++|++.===| ++-
T Consensus 46 ~~~~vIAEiKraS--Ps~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~-~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~ 122 (254)
T PF00218_consen 46 GRISVIAEIKRAS--PSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPK-FFGGSLEDLRAVRKAVDLPVLRKDFIIDPY 122 (254)
T ss_dssp SS-EEEEEE-SEE--TTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SC-CCHHHHHHHHHHHHHSSS-EEEES---SHH
T ss_pred CCCeEEEEeecCC--CCCCccCccCCHHHHHHHHHhcCCCEEEEECCCC-CCCCCHHHHHHHHHHhCCCcccccCCCCHH
Confidence 4566666665442 31 123345666666555679999955 5443 23446789999999999999987666 899
Q ss_pred hHHHhhc--CCEEEEeceEe
Q psy9039 227 NVEHYMT--ADALIIGSHFK 244 (251)
Q Consensus 227 ~v~~~~~--ADGvIVGS~~~ 244 (251)
|+.+... ||++..=.++.
T Consensus 123 QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHcCCCEeehhHHhC
Confidence 9888774 99987655443
No 477
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=67.87 E-value=12 Score=34.94 Aligned_cols=152 Identities=11% Similarity=0.181 Sum_probs=80.4
Q ss_pred chHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCC-ccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHH
Q psy9039 29 ANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVP-YVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA 107 (251)
Q Consensus 29 ~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~P-f~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~ 107 (251)
++++.+ +.+.+.|+ |+|. .|.+ |.-.....--+..-+...++..++.-. .+=+.+|++.... ..
T Consensus 14 g~l~~l--------~~ai~~GA-DaVY----~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk-k~~V~~N~~~~~~-~~ 78 (347)
T COG0826 14 GNLEDL--------KAAIAAGA-DAVY----IGEKEFGLRRRALNFSVEDLAEAVELAHSAGK-KVYVAVNTLLHND-EL 78 (347)
T ss_pred CCHHHH--------HHHHHcCC-CEEE----eCCcccccccccccCCHHHHHHHHHHHHHcCC-eEEEEeccccccc-hh
Confidence 477777 77788999 9995 5666 433211111222337777777776533 1345566555431 11
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhh---
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASF--- 184 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~--- 184 (251)
-.+ .++++. -...|++++|..|..-+.-.++..+ ++.+.. |. .....-++.+.|
T Consensus 79 ~~~-----~~~l~~----l~e~GvDaviv~Dpg~i~l~~e~~p--~l~ih~------S~------q~~v~N~~~~~f~~~ 135 (347)
T COG0826 79 ETL-----ERYLDR----LVELGVDAVIVADPGLIMLARERGP--DLPIHV------ST------QANVTNAETAKFWKE 135 (347)
T ss_pred hHH-----HHHHHH----HHHcCCCEEEEcCHHHHHHHHHhCC--CCcEEE------ee------eEecCCHHHHHHHHH
Confidence 111 133332 2457799999999776655555543 344421 11 111112333343
Q ss_pred ccccEEEecCCCCCCCCCHHHHHHHHhcCC-CC--EEEecCC
Q psy9039 185 FLSDGLIITGNATGDPADVSQLMSVKNAVD-LP--ILIGSGV 223 (251)
Q Consensus 185 ~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~-~P--V~vG~GI 223 (251)
.|+..++.+ ..-+.+.|.++++.++ ++ |++=|+.
T Consensus 136 ~G~~rvVl~-----rEls~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 136 LGAKRVVLP-----RELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred cCCEEEEeC-----ccCCHHHHHHHHHhCCCceEEEEEecch
Confidence 366666553 2334677888887762 33 6666655
No 478
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=67.69 E-value=47 Score=31.85 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHh---cCCCCEEE------------ecCCChHhHHHhhc---CCEEE
Q psy9039 177 ETAKAASFFLSDGLIITGNATGDPADVSQLMSVKN---AVDLPILI------------GSGVTSDNVEHYMT---ADALI 238 (251)
Q Consensus 177 ~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~---~~~~PV~v------------G~GI~~~~v~~~~~---ADGvI 238 (251)
+-++.+...|+.++-|.-...|.. -++.+++ ..++||.. --||+..-..++++ ||.++
T Consensus 228 ~ra~~~~~~G~~~~mv~~~~~G~~----~l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~ 303 (412)
T TIGR03326 228 RRAELVADLGGQYVMVDVVVCGWS----ALQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAKLYRLIGVDQLH 303 (412)
T ss_pred HHHHHHHHhCCCeEEEEeeccchH----HHHHHHHhhccCCeEEEEcCCcccccccCCCCcCcHHHHHHHHHHcCCCeee
Confidence 333344346888887765544433 3555554 45788887 23777644666664 99999
Q ss_pred Eece
Q psy9039 239 IGSH 242 (251)
Q Consensus 239 VGS~ 242 (251)
++|.
T Consensus 304 ~~t~ 307 (412)
T TIGR03326 304 TGTA 307 (412)
T ss_pred eCCC
Confidence 9986
No 479
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=67.68 E-value=37 Score=32.53 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=41.7
Q ss_pred cHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHh---cCCCCEEE-----e-------cCCChHhHHHhhc---CC
Q psy9039 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKN---AVDLPILI-----G-------SGVTSDNVEHYMT---AD 235 (251)
Q Consensus 174 ~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~---~~~~PV~v-----G-------~GI~~~~v~~~~~---AD 235 (251)
.+.+-++.+...|++++-+.-...|.. .++.+++ ..++||.. | -||+..-..++++ ||
T Consensus 212 em~~ra~~a~e~G~~~~mv~~~~~G~~----~l~~l~~~~~~~~l~ihaHra~~ga~~r~~~~Gis~~~l~kl~RLaGaD 287 (412)
T cd08213 212 EMERRAELVADLGGKYVMIDVVVAGWS----ALQYLRDLAEDYGLAIHAHRAMHAAFTRNPRHGISMLVLAKLYRLIGVD 287 (412)
T ss_pred HHHHHHHHHHHhCCCeEEeeccccChH----HHHHHHHhccccCeEEEECCCcceecccCCcCcCcHHHHHHHHHHcCCC
Confidence 334444444446888887765555443 3555554 45688887 4 3777655666664 99
Q ss_pred EEEEece
Q psy9039 236 ALIIGSH 242 (251)
Q Consensus 236 GvIVGS~ 242 (251)
.+++||.
T Consensus 288 ~ih~~t~ 294 (412)
T cd08213 288 QLHIGTA 294 (412)
T ss_pred ccccCCc
Confidence 9999997
No 480
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=67.64 E-value=21 Score=31.70 Aligned_cols=59 Identities=24% Similarity=0.391 Sum_probs=36.9
Q ss_pred hhccccEEEecCCCCCCCC-C----HHHHHHHHhcC--CCCEEEecCC-ChHhHHH----hhc--CCEEEEec
Q psy9039 183 SFFLSDGLIITGNATGDPA-D----VSQLMSVKNAV--DLPILIGSGV-TSDNVEH----YMT--ADALIIGS 241 (251)
Q Consensus 183 ~~~~~D~v~VTG~~~g~~~-~----~~~l~~vr~~~--~~PV~vG~GI-~~~~v~~----~~~--ADGvIVGS 241 (251)
...|++++.+-|+...... + .+.++.+++.+ ++||++|-|- +.++..+ +.+ +|++.+..
T Consensus 31 ~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 31 IENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 3369999998877422211 1 23455566665 5899999887 5444332 223 99998874
No 481
>PRK15452 putative protease; Provisional
Probab=67.59 E-value=23 Score=34.16 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=70.8
Q ss_pred chHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCC-ccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHH
Q psy9039 29 ANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVP-YVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAA 107 (251)
Q Consensus 29 ~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~P-f~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~ 107 (251)
++++.+ ++.+++|+ |+|.+ |.+ |+.......-+.+-+.+.++..++.-- .+-+.+|.+... ..
T Consensus 11 g~~e~l--------~aAi~~GA-DaVY~----G~~~~~~R~~~~~f~~edl~eav~~ah~~g~-kvyvt~n~i~~e--~e 74 (443)
T PRK15452 11 GTLKNM--------RYAFAYGA-DAVYA----GQPRYSLRVRNNEFNHENLALGINEAHALGK-KFYVVVNIAPHN--AK 74 (443)
T ss_pred CCHHHH--------HHHHHCCC-CEEEE----CCCccchhhhccCCCHHHHHHHHHHHHHcCC-EEEEEecCcCCH--HH
Confidence 367777 77789999 99964 443 332111112222346666666665311 123444444332 11
Q ss_pred HHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHHhhhccc
Q psy9039 108 LATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKAASFFLS 187 (251)
Q Consensus 108 ~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~a~~~~~ 187 (251)
+.-. .++++. ...++.+|+|+.|.+.+...++..+ ++.+..+ ..++..+ ...++.-...|+
T Consensus 75 l~~~----~~~l~~----l~~~gvDgvIV~d~G~l~~~ke~~p--~l~ih~s------tqlni~N---~~a~~f~~~lG~ 135 (443)
T PRK15452 75 LKTF----IRDLEP----VIAMKPDALIMSDPGLIMMVREHFP--EMPIHLS------VQANAVN---WATVKFWQQMGL 135 (443)
T ss_pred HHHH----HHHHHH----HHhCCCCEEEEcCHHHHHHHHHhCC--CCeEEEE------ecccCCC---HHHHHHHHHCCC
Confidence 1111 122221 1346789999999777766666542 3344321 1111111 111222222578
Q ss_pred cEEEecCCCCCCCCCHHHHHHHHhc
Q psy9039 188 DGLIITGNATGDPADVSQLMSVKNA 212 (251)
Q Consensus 188 D~v~VTG~~~g~~~~~~~l~~vr~~ 212 (251)
+.++++= +-+++.|+.+++.
T Consensus 136 ~rvvLSr-----ELsl~EI~~i~~~ 155 (443)
T PRK15452 136 TRVILSR-----ELSLEEIEEIRQQ 155 (443)
T ss_pred cEEEECC-----cCCHHHHHHHHhh
Confidence 8866642 3356777777644
No 482
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=67.50 E-value=92 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=22.1
Q ss_pred CHHHHHHHHhcCCCCEEEecCCChHhHHHhhc-CCEEEEece
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT-ADALIIGSH 242 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI~~~~v~~~~~-ADGvIVGS~ 242 (251)
+...+.++++..+-.+.+-.|-...-+..+.. ++|++.|++
T Consensus 166 d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~is~~~ 207 (292)
T PRK03170 166 DLERVSELIELVPDDFAVYSGDDALALPFLALGGVGVISVAA 207 (292)
T ss_pred CHHHHHHHHHhCCCCeEEEECChHhHHHHHHcCCCEEEEhHH
Confidence 45666666554432344444443333333444 999998754
No 483
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=67.36 E-value=19 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.316 Sum_probs=40.8
Q ss_pred hhccccEEEec-CCCCCCC---C--CHHHHHHHHhcCCCCEEE--ecCCChHhHHHhhc--CCEEEEeceE
Q psy9039 183 SFFLSDGLIIT-GNATGDP---A--DVSQLMSVKNAVDLPILI--GSGVTSDNVEHYMT--ADALIIGSHF 243 (251)
Q Consensus 183 ~~~~~D~v~VT-G~~~g~~---~--~~~~l~~vr~~~~~PV~v--G~GI~~~~v~~~~~--ADGvIVGS~~ 243 (251)
+.-|+|++-|+ |...|.. + +.++|+++++.+++|+++ |+|+..+++++... .-=+=|+|.+
T Consensus 166 ~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l 236 (286)
T PRK08610 166 EKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTEN 236 (286)
T ss_pred HHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHH
Confidence 33589999664 4433432 2 468899999999999998 45556788888774 4444444443
No 484
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=67.22 E-value=12 Score=34.11 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=45.3
Q ss_pred hhCCCCcCCCCccEEEEeec--CCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCcc
Q psy9039 40 KVLPPSVPVGVQHGVIVENM--HDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLD 117 (251)
Q Consensus 40 ~~a~~l~~~Gv~D~i~ieN~--~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~ 117 (251)
++++.+++.|+ |+|.+++. .|.. |. .....+++++++.++ +|+..+.=.++ ...+.-+.+.|++
T Consensus 120 ~~a~~a~~~Ga-D~Ivv~g~eagGh~-------g~---~~~~~ll~~v~~~~~--iPviaaGGI~~-~~~~~~al~~GA~ 185 (307)
T TIGR03151 120 ALAKRMEKAGA-DAVIAEGMESGGHI-------GE---LTTMALVPQVVDAVS--IPVIAAGGIAD-GRGMAAAFALGAE 185 (307)
T ss_pred HHHHHHHHcCC-CEEEEECcccCCCC-------CC---CcHHHHHHHHHHHhC--CCEEEECCCCC-HHHHHHHHHcCCC
Confidence 34466788999 99999765 1221 11 113567788888887 79888865554 3445555668888
Q ss_pred ceecc
Q psy9039 118 FIRAE 122 (251)
Q Consensus 118 Fir~~ 122 (251)
.+...
T Consensus 186 gV~iG 190 (307)
T TIGR03151 186 AVQMG 190 (307)
T ss_pred Eeecc
Confidence 87763
No 485
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=66.97 E-value=62 Score=30.42 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=35.7
Q ss_pred cccEEEec-CCCCCCC----C--CHHHHHHH----HhcCCCC------EEE--ecCCChHhHHHhhc--CCEEEEece
Q psy9039 186 LSDGLIIT-GNATGDP----A--DVSQLMSV----KNAVDLP------ILI--GSGVTSDNVEHYMT--ADALIIGSH 242 (251)
Q Consensus 186 ~~D~v~VT-G~~~g~~----~--~~~~l~~v----r~~~~~P------V~v--G~GI~~~~v~~~~~--ADGvIVGS~ 242 (251)
|+|++-|+ |...|.- + +.++|+++ ++.+++| +++ |+|++.+++++..+ .-=+=++|.
T Consensus 212 gvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~KINi~Td 289 (357)
T TIGR01520 212 PNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVVKMNIDTD 289 (357)
T ss_pred CcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCeEEEeCcH
Confidence 78998664 4433332 2 45788888 4566788 666 56677899998874 433334443
No 486
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=66.62 E-value=9.4 Score=35.66 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHhcC---CCCEEEecCCC--h----HhHHHh---hc--CCEEEEeceE
Q psy9039 203 VSQLMSVKNAV---DLPILIGSGVT--S----DNVEHY---MT--ADALIIGSHF 243 (251)
Q Consensus 203 ~~~l~~vr~~~---~~PV~vG~GI~--~----~~v~~~---~~--ADGvIVGS~~ 243 (251)
.++++.+.+.+ .+||++.||=+ . +.+.+. ++ |.|+++|--+
T Consensus 267 ~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNI 321 (348)
T PRK09250 267 IDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKA 321 (348)
T ss_pred HHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhh
Confidence 35566666666 79999999984 2 235556 54 8899998544
No 487
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=66.42 E-value=11 Score=35.25 Aligned_cols=38 Identities=13% Similarity=0.441 Sum_probs=33.0
Q ss_pred CHHHHHHHHhcCCCCEEEecCC-ChHhHHHhhc--CCEEEEe
Q psy9039 202 DVSQLMSVKNAVDLPILIGSGV-TSDNVEHYMT--ADALIIG 240 (251)
Q Consensus 202 ~~~~l~~vr~~~~~PV~vG~GI-~~~~v~~~~~--ADGvIVG 240 (251)
+++.++.+|+.+++||++- || +++.+..+.+ +|+++|.
T Consensus 209 ~~~~l~~lr~~~~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 209 SPADIEFIAKISGLPVIVK-GIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CHHHHHHHHHHhCCcEEEe-cCCCHHHHHHHHHcCCCEEEEe
Confidence 5788999999999999998 46 7888888876 9999995
No 488
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.20 E-value=13 Score=33.00 Aligned_cols=73 Identities=12% Similarity=-0.035 Sum_probs=45.1
Q ss_pred HHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcC
Q psy9039 36 AEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAG 115 (251)
Q Consensus 36 ~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g 115 (251)
+.+++.++.+.+.|+ |.|-| ++-|. . ..+ ...|.|++..+++.++ +|+.+..+... +...++..+.|
T Consensus 26 d~~~~~A~~~~~~GA-diIDI---G~~~~--~--~~~--~ee~~r~v~~i~~~~~--~piSIDT~~~~-v~e~aL~~~~G 92 (252)
T cd00740 26 DEALDVARQQVEGGA-QILDL---NVDYG--G--LDG--VSAMKWLLNLLATEPT--VPLMLDSTNWE-VIEAGLKCCQG 92 (252)
T ss_pred HHHHHHHHHHHHCCC-CEEEE---CCCCC--C--CCH--HHHHHHHHHHHHHhcC--CcEEeeCCcHH-HHHHHHhhCCC
Confidence 344455555677899 99986 33332 1 222 3478888888887777 79999987533 43344433347
Q ss_pred ccceec
Q psy9039 116 LDFIRA 121 (251)
Q Consensus 116 ~~Fir~ 121 (251)
++.+-.
T Consensus 93 ~~iINs 98 (252)
T cd00740 93 KCVVNS 98 (252)
T ss_pred CcEEEe
Confidence 776653
No 489
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=66.19 E-value=97 Score=27.58 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhh
Q psy9039 78 MTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVF 157 (251)
Q Consensus 78 ~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~ 157 (251)
-.+++++..++.. +|+..-.+- ..+...+... .+++++.++.- .-..++++..+.+. .|-+
T Consensus 77 gl~~l~~~~~~~G--l~~~t~~~d---~~~~~~l~~~-~d~lkI~s~~~-----------~n~~LL~~~a~~gk-PVil- 137 (260)
T TIGR01361 77 GLKLLRRAADEHG--LPVVTEVMD---PRDVEIVAEY-ADILQIGARNM-----------QNFELLKEVGKQGK-PVLL- 137 (260)
T ss_pred HHHHHHHHHHHhC--CCEEEeeCC---hhhHHHHHhh-CCEEEECcccc-----------cCHHHHHHHhcCCC-cEEE-
Confidence 3456777777777 787776653 3445555444 67777642211 12235555555543 2222
Q ss_pred hhhHhhccCCCCCCcccHHHHHHHhh---hccccEEEec--CCCCC--C---CCCHHHHHHHHhcCCCCEEE----ecCC
Q psy9039 158 TDIKKKHSSHAITADVDITETAKAAS---FFLSDGLIIT--GNATG--D---PADVSQLMSVKNAVDLPILI----GSGV 223 (251)
Q Consensus 158 a~v~~k~~~~~~~~~~~i~~~a~~a~---~~~~D~v~VT--G~~~g--~---~~~~~~l~~vr~~~~~PV~v----G~GI 223 (251)
|.|.. .+++++...++ ..|..-++++ |.++- . ..++..+..+|+.+.+||+. ..|-
T Consensus 138 -----k~G~~-----~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~ 207 (260)
T TIGR01361 138 -----KRGMG-----NTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGR 207 (260)
T ss_pred -----eCCCC-----CCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCc
Confidence 33322 14555544444 2466434333 55331 1 23567788999888999999 4442
Q ss_pred C---hHhHHHhh-c-CCEEEEeceEeec
Q psy9039 224 T---SDNVEHYM-T-ADALIIGSHFKQG 246 (251)
Q Consensus 224 ~---~~~v~~~~-~-ADGvIVGS~~~~~ 246 (251)
+ +.-..... - |||+++=+.|--|
T Consensus 208 r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 208 RDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred cchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 1 12221222 2 9999887776544
No 490
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=65.82 E-value=20 Score=36.65 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=59.4
Q ss_pred chhhhhhHhhccCCC---CCCcccHHHHHHHhhhccccEEEecCCCCCCCCCHHHHHHHHhcCCCCEEEecCC-ChHhHH
Q psy9039 154 VLVFTDIKKKHSSHA---ITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVE 229 (251)
Q Consensus 154 i~i~a~v~~k~~~~~---~~~~~~i~~~a~~a~~~~~D~v~VTG~~~g~~~~~~~l~~vr~~~~~PV~vG~GI-~~~~v~ 229 (251)
+.+++++.++. |. +.......++|+.-+..|++++-|-=...-...+.+.|+++|+.+++||+.===| ++-|+.
T Consensus 50 ~~vIaEiKraS--Ps~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ 127 (695)
T PRK13802 50 IPVIAEIKRAS--PSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVTDYQIW 127 (695)
T ss_pred CeEEEEeecCC--CCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCCHHHHH
Confidence 45666555442 21 1223355666665445789998665443445667899999999999999976556 899988
Q ss_pred Hhhc--CCEEEEeceEe
Q psy9039 230 HYMT--ADALIIGSHFK 244 (251)
Q Consensus 230 ~~~~--ADGvIVGS~~~ 244 (251)
+... ||++..=.++.
T Consensus 128 ea~~~GADavLLI~~~L 144 (695)
T PRK13802 128 EARAHGADLVLLIVAAL 144 (695)
T ss_pred HHHHcCCCEeehhHhhc
Confidence 8775 99987654443
No 491
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.82 E-value=1e+02 Score=27.64 Aligned_cols=182 Identities=19% Similarity=0.205 Sum_probs=92.9
Q ss_pred CCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCC---CCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEee
Q psy9039 25 PEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHD---VPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILS 101 (251)
Q Consensus 25 P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~---~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~ 101 (251)
|.--.+.+.+.+.| +.|.+.|+ ..+.. ..++ .|++- .|+- ..-.+++++++++.. +|+..-.+-
T Consensus 34 PCsie~~~~~~~~A----~~lk~~g~-~~~r~-~~~kpRTs~~s~---~G~g--~~gl~~l~~~~~~~G--l~~~te~~d 100 (266)
T PRK13398 34 PCAVESEEQMVKVA----EKLKELGV-HMLRG-GAFKPRTSPYSF---QGLG--EEGLKILKEVGDKYN--LPVVTEVMD 100 (266)
T ss_pred CCcCCCHHHHHHHH----HHHHHcCC-CEEEE-eeecCCCCCCcc---CCcH--HHHHHHHHHHHHHcC--CCEEEeeCC
Confidence 55444555554444 34555788 75543 1111 13332 2332 333456677777777 788777654
Q ss_pred CChHHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCCCCCcccHHHHHHH
Q psy9039 102 GCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHAITADVDITETAKA 181 (251)
Q Consensus 102 N~~~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~~~~~~~i~~~a~~ 181 (251)
. .+....... .+++++.++.- ...++++...+.+. .|-+ |.|.. -++++....
T Consensus 101 ~---~~~~~l~~~-vd~~kIga~~~-----------~n~~LL~~~a~~gk-PV~l------k~G~~-----~s~~e~~~A 153 (266)
T PRK13398 101 T---RDVEEVADY-ADMLQIGSRNM-----------QNFELLKEVGKTKK-PILL------KRGMS-----ATLEEWLYA 153 (266)
T ss_pred h---hhHHHHHHh-CCEEEECcccc-----------cCHHHHHHHhcCCC-cEEE------eCCCC-----CCHHHHHHH
Confidence 2 334443333 57877642211 12335555555543 2222 33322 245555544
Q ss_pred hhh---ccc-c-EEEecCCCCC-CCC----CHHHHHHHHhcCCCCEEE-ecC-CC-----hHhHHHhh-c-CCEEEEece
Q psy9039 182 ASF---FLS-D-GLIITGNATG-DPA----DVSQLMSVKNAVDLPILI-GSG-VT-----SDNVEHYM-T-ADALIIGSH 242 (251)
Q Consensus 182 a~~---~~~-D-~v~VTG~~~g-~~~----~~~~l~~vr~~~~~PV~v-G~G-I~-----~~~v~~~~-~-ADGvIVGS~ 242 (251)
++. .|- + .++-.|.++. ..+ ++..+..+|+.+.+||++ -+- +. +....... . |||+++=+.
T Consensus 154 ~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 154 AEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred HHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEecc
Confidence 442 354 3 4455666443 222 345677888888999998 222 22 22222222 3 999999877
Q ss_pred Eeec
Q psy9039 243 FKQG 246 (251)
Q Consensus 243 ~~~~ 246 (251)
|--|
T Consensus 234 ~~pd 237 (266)
T PRK13398 234 PEPE 237 (266)
T ss_pred CCcc
Confidence 6543
No 492
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=65.61 E-value=11 Score=36.39 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=48.4
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~~~ia~a~g~~Fir 120 (251)
+.+++.|+ |.|-|... .|-.+...+.++++.+|+.++ +|+++-+--+.+ .+..-.|...|++.+.
T Consensus 161 ~~l~~~Ga-d~I~i~Dt----------~G~l~P~~v~~lv~alk~~~~--~pi~~H~Hnt~GlA~AN~laAieaGad~vD 227 (448)
T PRK12331 161 KEMQEMGA-DSICIKDM----------AGILTPYVAYELVKRIKEAVT--VPLEVHTHATSGIAEMTYLKAIEAGADIID 227 (448)
T ss_pred HHHHHcCC-CEEEEcCC----------CCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCcHHHHHHHHHHcCCCEEE
Confidence 44678899 99965433 455566668899999999988 799998875543 4444556678888887
Q ss_pred cc
Q psy9039 121 AE 122 (251)
Q Consensus 121 ~~ 122 (251)
.+
T Consensus 228 ~s 229 (448)
T PRK12331 228 TA 229 (448)
T ss_pred ee
Confidence 53
No 493
>KOG2794|consensus
Probab=65.50 E-value=89 Score=28.45 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=42.3
Q ss_pred EEeeeecccccccCCCCCCCcchHHHHHHHHHhhCCCCcCCCCccEEEEeecCCCCcccc---------CCCchHHHHHH
Q psy9039 8 IVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLE---------AESGPEITANM 78 (251)
Q Consensus 8 ~~~~~~~~p~~~~~pG~P~~~~~~~~i~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p---------~~~gp~i~aa~ 78 (251)
|.||--++--++.+||-.++. ..+.+++...|++-|. ..|++ +|+|-... ...||++
T Consensus 47 I~e~~dd~~pI~SmPg~~r~G------~~rL~e~l~plv~~Gl-~sViL---fgvv~~~~Kd~~gs~Ads~~gpvi---- 112 (340)
T KOG2794|consen 47 IHEGEDDFTPIDSMPGIYRLG------VNRLKEELAPLVAKGL-RSVIL---FGVVPEALKDPTGSEADSDNGPVI---- 112 (340)
T ss_pred EecCcccccccccCCchhHHH------HHHHHHHHHHHHHhcc-ceEEE---ecCCCccccCcccccccCCCCcHH----
Confidence 556666655666666643332 2234455577888999 88886 67652211 0134544
Q ss_pred HHHHHHHHHhCCCC
Q psy9039 79 TRLCAEIRKVLPPS 92 (251)
Q Consensus 79 ~~~i~~vr~~~~~~ 92 (251)
+.++.+|+.++++
T Consensus 113 -~ai~~lr~~fPdL 125 (340)
T KOG2794|consen 113 -RAIRLLRDRFPDL 125 (340)
T ss_pred -HHHHHHHHhCcce
Confidence 5678899888864
No 494
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.48 E-value=20 Score=33.17 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=60.9
Q ss_pred CCCCccEEEEeecCCCCccccCCCch--HHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh---HHHHHHHHHcCccceec
Q psy9039 47 PVGVQHGVIVENMHDVPYVLEAESGP--EITANMTRLCAEIRKVLPPSVPVGVQILSGCN---KAALATAQAAGLDFIRA 121 (251)
Q Consensus 47 ~~Gv~D~i~ieN~~~~Pf~~p~~~gp--~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~---~~~~~ia~a~g~~Fir~ 121 (251)
+-|+ |.+-+|=-..+-|......|. -+++......++....++ .|+.+.----+. ...+.+|...|+.|--.
T Consensus 198 ~~gv-DVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~--~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGv 274 (329)
T PRK04161 198 RFGV-DVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATH--LPYIYLSAGVSAKLFQETLVFAAEAGAQFNGV 274 (329)
T ss_pred CCCC-cEEEEecccccccccccCcccccccHHHHHHHHHHHhcccC--CCEEEEcCCCCHHHHHHHHHHHHhcCCCcccE
Confidence 5799 999987333333433322231 123333344455555566 798776422221 45688998899998332
Q ss_pred ccccccccCC-C---ceeecCcchhHHHHHhcCCCcchhhhhhHhhccCCC
Q psy9039 122 ESFVFGHMAD-E---GLMNAQAGPLLRYRKQIGADNVLVFTDIKKKHSSHA 168 (251)
Q Consensus 122 ~~~~~~~~~~-~---Gli~~da~e~~~~r~~l~~~~i~i~a~v~~k~~~~~ 168 (251)
.|| ++.- + ....++......+-+..|.+.|.-+..|..+.+.|+
T Consensus 275 --L~G-RAtW~~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~vl~~ta~~w 322 (329)
T PRK04161 275 --LCG-RATWAGSVPVYITEGEEAARKWLCTEGFQNIDELNRVLEETASPW 322 (329)
T ss_pred --Eee-hhhhhhhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHHHHccCCcc
Confidence 233 2221 1 222334444445555566666666666665544443
No 495
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.10 E-value=22 Score=32.40 Aligned_cols=63 Identities=14% Similarity=0.003 Sum_probs=38.1
Q ss_pred HhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCChHHHHHHHHHcCccc
Q psy9039 39 RKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQAAGLDF 118 (251)
Q Consensus 39 ~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~~~~~~ia~a~g~~F 118 (251)
..|++.|++.|+ |.|- |.+- ..| .....+..|+.+. +||..-+ .| ....--+...|++|
T Consensus 86 ~~Ea~~L~~~Gv-DiID-~Te~----lrp----------ad~~~~~~K~~f~--~~fmad~-~~--l~EAlrai~~Gadm 144 (293)
T PRK04180 86 FVEAQILEALGV-DYID-ESEV----LTP----------ADEEYHIDKWDFT--VPFVCGA-RN--LGEALRRIAEGAAM 144 (293)
T ss_pred HHHHHHHHHcCC-CEEe-ccCC----CCc----------hHHHHHHHHHHcC--CCEEccC-CC--HHHHHHHHHCCCCe
Confidence 566789999999 9992 1111 111 3366777888776 6754432 23 22222345688999
Q ss_pred eecc
Q psy9039 119 IRAE 122 (251)
Q Consensus 119 ir~~ 122 (251)
+|..
T Consensus 145 I~Tt 148 (293)
T PRK04180 145 IRTK 148 (293)
T ss_pred eecc
Confidence 9964
No 496
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=64.96 E-value=18 Score=31.15 Aligned_cols=70 Identities=21% Similarity=0.389 Sum_probs=40.0
Q ss_pred HHHhhhccccEEEecC--CCCCCCCCHHHHHHHHhcCCCCEEE-----ecCC--ChHhHH-------Hhhc--CCEEEEe
Q psy9039 179 AKAASFFLSDGLIITG--NATGDPADVSQLMSVKNAVDLPILI-----GSGV--TSDNVE-------HYMT--ADALIIG 240 (251)
Q Consensus 179 a~~a~~~~~D~v~VTG--~~~g~~~~~~~l~~vr~~~~~PV~v-----G~GI--~~~~v~-------~~~~--ADGvIVG 240 (251)
+..|...|+|.+-+-. ..-|..|+...++++++..++||.+ ++.- |++.+. .+.+ |||+++|
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 92 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFG 92 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred HHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 4566667899985533 2334567789999999999999887 4433 655544 3333 9999999
Q ss_pred ceEeecCee
Q psy9039 241 SHFKQGGRT 249 (251)
Q Consensus 241 S~~~~~g~~ 249 (251)
++.+||.+
T Consensus 93 -~L~~dg~i 100 (201)
T PF03932_consen 93 -ALTEDGEI 100 (201)
T ss_dssp --BETTSSB
T ss_pred -eECCCCCc
Confidence 34455543
No 497
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=64.93 E-value=6.6 Score=34.19 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=33.2
Q ss_pred HHHHHHHHhcC--CCCEEEecCCChHhHHHhhc--CCEEEEeceEeec
Q psy9039 203 VSQLMSVKNAV--DLPILIGSGVTSDNVEHYMT--ADALIIGSHFKQG 246 (251)
Q Consensus 203 ~~~l~~vr~~~--~~PV~vG~GI~~~~v~~~~~--ADGvIVGS~~~~~ 246 (251)
...+..+|+.+ +.++.+-+||+++.....-+ .|-+|||+.+-+.
T Consensus 150 ~~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A 197 (218)
T PRK13305 150 EADLARMKALSDIGLELSITGGITPADLPLFKDIRVKAFIAGRALAGA 197 (218)
T ss_pred HHHHHHHHHHhCCCCcEEEeCCcCccccccccccCCCEEEECCcccCC
Confidence 34466666665 57799999999887765554 9999999998653
No 498
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=64.68 E-value=13 Score=37.12 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=48.2
Q ss_pred CCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeCCh--HHHHHHHHHcCcccee
Q psy9039 43 PPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSGCN--KAALATAQAAGLDFIR 120 (251)
Q Consensus 43 ~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N~~--~~~~~ia~a~g~~Fir 120 (251)
+.+.+.|+ |.|-|.... |-.......++++++|+.++ +|+++-+--+.. .+..=.|...|++.+.
T Consensus 161 ~~l~~~Ga-d~I~i~Dt~----------G~~~P~~~~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAv~aGad~vD 227 (592)
T PRK09282 161 KELEEMGC-DSICIKDMA----------GLLTPYAAYELVKALKEEVD--LPVQLHSHCTSGLAPMTYLKAVEAGVDIID 227 (592)
T ss_pred HHHHHcCC-CEEEECCcC----------CCcCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCcHHHHHHHHHHhCCCEEE
Confidence 55677899 999765554 44455568899999999988 799998875543 4444455668889887
Q ss_pred c
Q psy9039 121 A 121 (251)
Q Consensus 121 ~ 121 (251)
.
T Consensus 228 ~ 228 (592)
T PRK09282 228 T 228 (592)
T ss_pred e
Confidence 5
No 499
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=64.66 E-value=68 Score=31.55 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHH--------HHHHHHHhCCCCccEEEEE-------
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTR--------LCAEIRKVLPPSVPVGVQI------- 99 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~--------~i~~vr~~~~~~~P~Gvn~------- 99 (251)
.+.-+.-+..|.+.|+ +.|++ -|..+-.++.| .++++|+..+.+ ++...+
T Consensus 26 t~d~l~ia~~ld~~G~-~siE~-------------~GGatfd~~~rfl~Edpwerlr~lr~~~~nt-~lqmL~Rg~N~vG 90 (499)
T PRK12330 26 MEDMVGACEDIDNAGY-WSVEC-------------WGGATFDACIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLG 90 (499)
T ss_pred HHHHHHHHHHHHhcCC-CEEEe-------------cCCcchhhhhcccCCCHHHHHHHHHHhCCCC-eEEEEEcccccCC
Q ss_pred eeCCh----HHHHHHHHHcCccceecccccccccCCCceeecCcchhHHHHHhcCCCc-chhhhhhHhhccCCCCCCccc
Q psy9039 100 LSGCN----KAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADN-VLVFTDIKKKHSSHAITADVD 174 (251)
Q Consensus 100 ~~N~~----~~~~~ia~a~g~~Fir~~~~~~~~~~~~Gli~~da~e~~~~r~~l~~~~-i~i~a~v~~k~~~~~~~~~~~ 174 (251)
|.|-+ ..-...+...|.+.+|+.-.+. -........+..++.+..- ..+-..+.++| +.+.
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln--------dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~------t~e~ 156 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALN--------DPRNLEHAMKAVKKVGKHAQGTICYTVSPIH------TVEG 156 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCC--------hHHHHHHHHHHHHHhCCeEEEEEEEecCCCC------CHHH
Q ss_pred HHHHHHHhhhccccEEEecCCCCCCCCCH--HHHHHHHhcC--CCCEEEec----CCChHhHHHhhc--CCEE
Q psy9039 175 ITETAKAASFFLSDGLIITGNATGDPADV--SQLMSVKNAV--DLPILIGS----GVTSDNVEHYMT--ADAL 237 (251)
Q Consensus 175 i~~~a~~a~~~~~D~v~VTG~~~g~~~~~--~~l~~vr~~~--~~PV~vG~----GI~~~~v~~~~~--ADGv 237 (251)
..+.++.+...|+|.+++.=..--..|.. +++..+|+.+ ++||-+=+ |....|.-+.+. ||.+
T Consensus 157 ~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~v 229 (499)
T PRK12330 157 FVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEE
No 500
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=64.60 E-value=8.4 Score=35.14 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHhhCCCCcCCCCccEEEEeecCCCCccccCCCchHHHHHHHHHHHHHHHhCCCCccEEEEEeeC
Q psy9039 35 CAEIRKVLPPSVPVGVQHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQILSG 102 (251)
Q Consensus 35 ~~~a~~~a~~l~~~Gv~D~i~ieN~~~~Pf~~p~~~gp~i~aa~~~~i~~vr~~~~~~~P~Gvn~~~N 102 (251)
++.+++.++++.++|+ |+|.++ |+.+. ..++++.+..+ .|+-.|+...
T Consensus 164 ~deaI~Ra~aY~eAGA-D~ifi~-------------~~~~~----~ei~~~~~~~~--~P~~~nv~~~ 211 (294)
T TIGR02319 164 LDEAIRRSREYVAAGA-DCIFLE-------------AMLDV----EEMKRVRDEID--APLLANMVEG 211 (294)
T ss_pred HHHHHHHHHHHHHhCC-CEEEec-------------CCCCH----HHHHHHHHhcC--CCeeEEEEec
Confidence 3566677788999999 999752 22222 33455666666 6887787764
Done!