RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9039
         (251 letters)



>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
           phosphate synthase {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 231

 Score = 32.8 bits (74), Expect = 0.029
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 174 DITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDLPILIGSGV-TSDNVEHYM 232
                A       +  +I    +             K      +  G G+ + +     +
Sbjct: 147 LAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREML 206

Query: 233 T-ADALIIGSHF 243
             AD +I+G+  
Sbjct: 207 RYADTIIVGNVI 218


>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
           thermophilus [TaxId: 274]}
          Length = 271

 Score = 30.1 bits (67), Expect = 0.22
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 192 ITGNATGDPADVSQLMS-VKNAVDLPILIGSGVTS-DNVEHYMTADALIIGSHF 243
           +TG     P +V  L+  +K    LP+ +G GV+          AD +++GS  
Sbjct: 179 VTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAAVADGVVVGSAL 232


>d2f9ha1 b.161.1.1 (A:3-123) PTS system, IIa component (PTSIIA)
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 121

 Score = 28.2 bits (63), Expect = 0.42
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 175 ITETAKAASFFLSDGLIITG-NATGDPADVSQLMSVKNAVDLPILIGSGVTSDNVEHYMT 233
           +TE  K A       +I+ G  AT      + + S      + +  G  +   +  + +T
Sbjct: 7   VTEIGKHAIDDSEKMIILFGETATDTLKQHAVIQSFPEKDQVTLAEGDHLKIGDTNYTIT 66

Query: 234 A 234
            
Sbjct: 67  K 67


>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
           2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
          Length = 222

 Score = 27.9 bits (61), Expect = 0.89
 Identities = 34/210 (16%), Positives = 58/210 (27%), Gaps = 15/210 (7%)

Query: 41  VLPPSVPVGVQHGVIVENMHDVPYVLEA------ESGPEITANMTRLCAEIRKVLPPSVP 94
           +LP  + V  Q  +  E +H    + +            I AN       I++ +   V 
Sbjct: 2   MLPHGLIVSCQ-ALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVI 60

Query: 95  VGVQILSGCNKAALATAQAAGLDFIRAESFVFGHMADEGLMNAQAGPLLRYRKQIGADNV 154
             V+     +   +        + I ++  V    A       +    L    +  A NV
Sbjct: 61  GIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNV 120

Query: 155 LVFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVD 214
            +  DI          A              L      T        D   L  V  +VD
Sbjct: 121 EIMADIATVE-----EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD 175

Query: 215 LPILIGSGV-TSDNVEHYMT--ADALIIGS 241
             ++    V T D  +  M       ++G 
Sbjct: 176 AKVIAEGNVITPDMYKRVMDLGVHCSVVGG 205


>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 26.2 bits (58), Expect = 1.1
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 17/62 (27%)

Query: 1  MPQKHGVIVENMHDVPYVLEAESGPEITANMTRLCAEIRKVLPPSVPVGVQHGVIVENMH 60
            Q  GV+V +M D+P       G  + A  T    + RKV P          ++V +  
Sbjct: 31 TSQYQGVVVYSMADIPL------GFGVAAKST---QDCRKVDP--------MAIVVFHQA 73

Query: 61 DV 62
          D+
Sbjct: 74 DI 75


>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
           imidazoleglycerolphosphate synthase HisF {Baker's yeast
           (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
          Length = 323

 Score = 25.9 bits (56), Expect = 5.0
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 156 VFTDIKKKHSSHAITADVDITETAKAASFFLSDGLIITGNATGDPADVSQLMSVKNAVDL 215
                 ++     +       E   A    L+    I  + +    D+  +  VK+AV +
Sbjct: 209 CTIKGGRESRDLGVWELTRACEALGAGEILLNC---IDKDGSNSGYDLELIEHVKDAVKI 265

Query: 216 PILIGSGVTSDNVEH------YMTADALIIGS--HFKQ 245
           P++  SG      EH         ADA +     H  +
Sbjct: 266 PVIASSGAG--VPEHFEEAFLKTRADACLGAGMFHRGE 301


>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
           (Oryza sativa) [TaxId: 4530]}
          Length = 220

 Score = 25.2 bits (54), Expect = 8.2
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 55  IVENMHDVPYVLEAESGPEI--TANMTRLCAEIRKVLPPSVPVGVQILSGCNKAALATAQ 112
           +VE  + V  VL     P       M  +  ++R +      + +++  G   + +  A 
Sbjct: 127 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAA 186

Query: 113 AAGLDFIRAESFVFGH 128
           +AG + I A S +FG 
Sbjct: 187 SAGANCIVAGSSIFGA 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 900,199
Number of extensions: 40102
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 11
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)