BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy904
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 166/326 (50%), Gaps = 6/326 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L +A GH +V+ LL RGA + K TPL +AA AGH +V LL +KA + A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
++ + TPL A G +V+LLL AN + +TPL +AA G+V + LL
Sbjct: 76 KA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
E + +K G +PL +AA G +LLL+ + NA + N T L +A
Sbjct: 135 --KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNN 191
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
++V LLL R + A G TPL AA VEV R LL G NA V T L
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV--TPL 249
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
+AA +GH V LLLSK A + NK G +PL L A GH+ V ++L KHG +D+
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309
Query: 313 RKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ L A G++K V++++ H A
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQA 335
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 177/361 (49%), Gaps = 18/361 (4%)
Query: 12 DTALTLACAG--GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
D L CA GH +V+LLL A+ G TPL +AA GH + V LL +A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
+++ TPL +A G+ V ELLL R A+ + TPL +A ++I+KL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
LL G +S + G +PL +AA + LL G NA+ T L LA
Sbjct: 198 LLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQ 254
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR- 248
+G E+V+LLL ++AN K+GLTPL A G+V V VL+ G V+A ++R
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA----TTRM 310
Query: 249 -DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
T L +A+ G+ + V+ LL A V K K G SPL AA GH +V LL K+GA
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 308 DSQDNRKVSCLMAAFRKGHVKA--VRWMVNHVAQF--PSDQEMTRYIQTVNDKELLDKCQ 363
+ + + L A R G++ V +V F SD+ + +TV+ E+LD +
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD--EILDVSE 428
Query: 364 E 364
+
Sbjct: 429 D 429
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 96/190 (50%), Gaps = 4/190 (2%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N T L +A E+ LL G +G TPL LAA GH ++V +LL+ +A+
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
++ TPL L G V ++L+ G + YTPL +A+ G + ++K
Sbjct: 271 GNL-GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
LL H A++N++T KLG SPL AA GHT V LLL G+ N ++ ++ T L +A
Sbjct: 330 LLQHQADVNAKT--KLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKR 386
Query: 190 QGRHEVVSLL 199
G V +L
Sbjct: 387 LGYISVTDVL 396
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 3/188 (1%)
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
++PL +A+ GH VK LL G+ N T L +A G EV LL KA V
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
+AK TPL AA G+ + ++LL+ A+ N ++ T L IAA +GH V
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLA 131
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL K A KKG +PL +AA G + V ELL + A ++ ++ L A +
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191
Query: 327 VKAVRWMV 334
+ V+ ++
Sbjct: 192 LDIVKLLL 199
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+PL +A+ GHL +V+ L + GA + + + + L A R GH + ++++ + A+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 151/315 (47%), Gaps = 30/315 (9%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
E D L A +G E+L+ LL + D + TPL LAA ++V +LL H
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
AD+ A+ ++ PL ACS G YEV ELLL GA ++ +TPL AAS V +
Sbjct: 82 ADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 128 KLLLTHGAE---INSRTGSKLGISP----------------LMLAAMNGHTAAVKLLLDM 168
LLL+HGA+ +N S + ++P L+ AA A VK L +
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 169 GSDINAQIETNRNTALTLAC---FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225
IN + + TAL A R +V LLL + ANV + K +TPL AA +
Sbjct: 201 -EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
+V VL GA +NA + S TAL AA GH + LLLS G+ + + +G
Sbjct: 260 NDVMEVLHKHGAKMNA--LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG---- 313
Query: 286 WLAANGGHLSVVELL 300
+ AA G+ +V ++L
Sbjct: 314 FTAAQMGNEAVQQIL 328
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 133/284 (46%), Gaps = 25/284 (8%)
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
E KD L A SG +++ LL N + TPL LAA V I++LLL HG
Sbjct: 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
A+++++ K G+ PL A GH +LLL G+ +NA ++ + T L A + R E
Sbjct: 82 ADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNRVE 138
Query: 195 VVSLLLDRKA-----NVEHRAKTGLTPLMEAASGGYVEV-GRVLLDKGADVNAPPV---- 244
V SLLL A N ++ + P E E G LL + + V
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Query: 245 ---------PSSRDTALTIAADKGHCR---FVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
P S +TAL A H + ELLL KGA V KNK +PL +AA
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 293 HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
H V+E+L KHGA +++ D+ + L A GH++ R ++++
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G E LL +VN + T L +AA R V+LLL GA V
Sbjct: 28 LLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+K G PL A + GH V ELL KHGA +++ D + + L A K V+ +++H
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 337 VA 338
A
Sbjct: 147 GA 148
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 107/250 (42%), Gaps = 29/250 (11%)
Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
L A SG ++ LL ++ G K +PL LAA V+LLL G+D++A
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRK--STPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+ + L AC G +EV LLL A V TPL EAAS VEV +LL
Sbjct: 87 K-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 235 KGAD-----------VNAPPVPSSRDTALTIAADKGH-----CRFVELL-LSKGAQVEVK 277
GAD V+ P P R+ LT KGH R +L + K +E+
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRER-LTYEF-KGHSLLQAAREADLAKVKKTLALEII 203
Query: 278 NKKG----NSPLWLAANGGHL---SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
N K + L A H V ELL + GA+++ ++ ++ L A + H +
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263
Query: 331 RWMVNHVAQF 340
+ H A+
Sbjct: 264 EVLHKHGAKM 273
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 227 EVGRVLLDKGADVNAPPVPSS---RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
E G+ LD AD +A V + +D L A + + LL + + ++
Sbjct: 2 EFGKSALDL-ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
PL LAA + +V+LL +HGAD+ ++D + L A GH + ++ H A
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G+TPL LAA GH ++V++LL AD+ A+ ++
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 67
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ YTPL LAA G++ I+++LL GA++
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G +P LA GH ++L
Sbjct: 128 NAQ--DKFGKTPFDLAIREGHEDIAEVL 153
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V + K G TPL AA G++E+ VLL GADVNA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA +GH VE+LL GA V K+K G +PL LAA GHL +VE+L K GAD
Sbjct: 69 Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 307 IDSQDNRKVSCLMAAFRKGH 326
+++QD + A R+GH
Sbjct: 127 VNAQDKFGKTPFDLAIREGH 146
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G E+VE+LL GA+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ YTPL LAA G++ I+++LL GA++N++ K G +PL LAA GH V++LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + T LA +G ++ +L
Sbjct: 123 AGADVNAQDKFGK-TPFDLAIREGHEDIAEVL 153
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G V++L+ G+D+NA+ + + T L LA +G E+V +LL A+V +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
K G TPL AA G++E+ VLL GADVNA T L +AA +GH VE+LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLK 122
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
GA V ++K G +P LA GH + E+L K
Sbjct: 123 AGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA +GH VE+LL GA V
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
K+K G +PL LAA GHL +VE+L K GAD++++D + L A R+GH++ V ++
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + + T L LA GH E+VE+LL GAD+ +DK G+TPL LAA GH ++V+
Sbjct: 27 DVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL AD+ A+ ++ TPL LA G E+VE+LL GA+ ++ TP LA
Sbjct: 86 VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
Query: 122 GYVNIIKLL 130
G+ +I ++L
Sbjct: 145 GHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G+TPL LAA GH ++V++LL AD+ A+ ++
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 67
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ YTPL LAA G++ I+++LL GA++
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G +P LA NG+ ++L
Sbjct: 128 NAQ--DKFGKTPFDLAIDNGNEDIAEVL 153
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G E+VE+LL GA+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ YTPL LAA G++ I+++LL GA++N++ K G +PL LAA GH V++LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + T LA G ++ +L
Sbjct: 123 AGADVNAQDKFGK-TPFDLAIDNGNEDIAEVL 153
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V + K G TPL AA G++E+ VLL GADVNA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA +GH VE+LL GA V K+K G +PL LAA GHL +VE+L K GAD
Sbjct: 69 Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 307 IDSQD 311
+++QD
Sbjct: 127 VNAQD 131
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G V++L+ G+D+NA+ + + T L LA +G E+V +LL A+V +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
K G TPL AA G++E+ VLL GADVNA T L +AA +GH VE+LL
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLK 122
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
GA V ++K G +P LA + G+ + E+L K
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA +GH VE+LL GA V
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
K+K G +PL LAA GHL +VE+L K GAD++++D + L A R+GH++ V ++
Sbjct: 64 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + + T L LA GH E+VE+LL GAD+ +DK G+TPL LAA GH ++V+
Sbjct: 27 DVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL AD+ A+ ++ TPL LA G E+VE+LL GA+ ++ TP LA
Sbjct: 86 VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDN 144
Query: 122 GYVNIIKLL 130
G +I ++L
Sbjct: 145 GNEDIAEVL 153
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 33/280 (11%)
Query: 48 LILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH 106
L++ A D +V LL A++ Q E TPL A R ++VELLL GA+
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
R + TP LAA G V ++KL L+ GA++N G + M AA+ G A+K L
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVNE--CDFYGFTAFMEAAVYGKVKALKFLY 145
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
G+++N + +T K + E K G T LM+AA G+V
Sbjct: 146 KRGANVNLRRKT------------------------KEDQERLRKGGATALMDAAEKGHV 181
Query: 227 EVGRVLLDK-GADVNAPPVPSSRDT---ALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
EV ++LLD+ GADVNA R+ AL + D LLL GA V V+ ++G
Sbjct: 182 EVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 283 SPLWLAANGGHLSVVE-LLCKHGADIDSQDNRKVSCLMAA 321
+PL LA HL +V+ LL + +I+ D+ + L+ A
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 139/319 (43%), Gaps = 52/319 (16%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+V+ + E T L A E++VELLL GAD R K G TP ILAA AG K
Sbjct: 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK--- 106
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+++L L++GA+ + +T AA
Sbjct: 107 -------------------------------LLKLFLSKGADVNECDFYGFTAFMEAAVY 135
Query: 122 GYVNIIKLLLTHGAEINSRTGSKL--------GISPLMLAAMNGHTAAVKLLLD-MGSDI 172
G V +K L GA +N R +K G + LM AA GH +K+LLD MG+D+
Sbjct: 136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195
Query: 173 NAQIETNRNT---ALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVG 229
NA RN AL + + LLLD A+V R + G TPL+ A ++ +
Sbjct: 196 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 255
Query: 230 RVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
+ LL++ + S TAL +A + + ELL +GA + G+ +
Sbjct: 256 QRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC----GDLVMTARR 310
Query: 290 NGGHLSVVELLCKHGADID 308
N H S+V++L HGA D
Sbjct: 311 NYDH-SLVKVLLSHGAKED 328
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L A G+++ V+ LL GAD+ D G TPL LAA GH +VV +LL+ AD A+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
K TPL LA G EVV+LLL++GA+ ++ TPL LAA G+ ++KLLL+ G
Sbjct: 68 SDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
A+ N T G +PL LA +G+ VKLL G
Sbjct: 127 ADPN--TSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
LI AA G+ V LL + AD+ A K TPL LA G EVV+LLL++GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G+ ++KLLL+ GA+ N++ G +PL LAA NGH VKLLL
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD--GKTPLHLAAENGHKEVVKLLLS 124
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D N R T L LA G EVV LL
Sbjct: 125 QGADPNTSDSDGR-TPLDLAREHGNEEVVKLL 155
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA NG+ VK LL+ G+D+NA +++ T L LA G EVV LLL + A+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
G TPL AA G+ EV ++LL +GAD NA S T L +AA+ GH V+LLLS
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
+GA + G +PL LA G+ VV+LL K G
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
++S+ T L LA GH+E+V+LLLS+GAD +D G TPL LAA GH +VV +LL+
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD A+ K TPL LA G EVV+LLL++GA+ + TPL LA G +
Sbjct: 93 GADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEV 151
Query: 127 IKLLLTHGA 135
+KLL G
Sbjct: 152 VKLLEKQGG 160
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A G + V LL+ A+V G TPL AA G+ EV ++LL +GAD NA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
S T L +AA+ GH V+LLLS+GA K+ G +PL LAA GH VV+LL
Sbjct: 68 --SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
GAD ++ D+ + L A G+ + V+ +
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + + LL+ GADVNA S T L +AA+ GH V+LLLS+GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNA--SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+ G +PL LAA GH VV+LL GAD +++D+ + L A GH + V+ +++
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 337 VA 338
A
Sbjct: 126 GA 127
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 33/280 (11%)
Query: 48 LILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH 106
L++ A D +V LL A++ Q E TPL A R ++VELLL GA+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
R + TP LAA G V ++KL L+ GA++N G + M AA+ G A+K L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE--CDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
G+++N + +T K + E K G T LM+AA G+V
Sbjct: 126 KRGANVNLRRKT------------------------KEDQERLRKGGATALMDAAEKGHV 161
Query: 227 EVGRVLLDK-GADVNAPPVPSSRDT---ALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
EV ++LLD+ GADVNA R+ AL + D LLL GA V V+ ++G
Sbjct: 162 EVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 283 SPLWLAANGGHLSVVE-LLCKHGADIDSQDNRKVSCLMAA 321
+PL LA HL +V+ LL + +I+ D+ + L+ A
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 124/286 (43%), Gaps = 47/286 (16%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+V+ + E T L A E++VELLL GAD R K G TP +LAA AG K
Sbjct: 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK--- 86
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+++L L++GA+ + +T AA
Sbjct: 87 -------------------------------LLKLFLSKGADVNECDFYGFTAFMEAAVY 115
Query: 122 GYVNIIKLLLTHGAEINSRTGSKL--------GISPLMLAAMNGHTAAVKLLLD-MGSDI 172
G V +K L GA +N R +K G + LM AA GH +K+LLD MG+D+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175
Query: 173 NAQIETNRNT---ALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVG 229
NA RN AL + + LLLD A+V R + G TPL+ A ++ +
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 230 RVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE 275
+ LL++ + S TAL +A + + ELL +GA +
Sbjct: 236 QRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
V++++ LL GA +N + + G +PL A V+LLL G+D + + N T
Sbjct: 18 VDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATP 75
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN--- 240
LA G +++ L L + A+V G T MEAA G V+ + L +GA+VN
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 241 -----APPVPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHL 294
+ TAL AA+KGH +++LL + GA V + G + L A
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195
Query: 295 SVVE----LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
S VE LL HGAD++ + R + L+ A K H+ V+ ++
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L++A V++ + LL+ GA+VN T L A VELLL GA +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM--- 333
+ K G +P LAA G + +++L GAD++ D + M A G VKA++++
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 334 ---VNHVAQFPSDQEMTR 348
VN + DQE R
Sbjct: 128 GANVNLRRKTKEDQERLR 145
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 4/163 (2%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
S+LG L+ AA NG+ VK L++ G+D+NA R T L A +G E+V LL+ +
Sbjct: 2 SELG-KRLIEAAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISK 59
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
A+V + G TPL AA G+ E+ ++L+ KGADVNA S T L AA +GH
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK--DSDGRTPLHYAAKEGHKE 117
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
V+LL+SKGA V + G +PL LA G+ +V+LL K G
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L A G+++ V+ L+ GAD+ D G TPL AA GH ++V +L++ AD+ A+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
+ TPL A G E+V+LL+++GA+ ++ TPL AA G+ I+KLL++ G
Sbjct: 68 SDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
A++N T G +PL LA +G+ VKLL G
Sbjct: 127 ADVN--TSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
LI AA G+ V L+ + AD+ A S+ TPL A G E+V+LL+++GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL AA G+ I+KLL++ GA++N++ G +PL AA GH VKLL+
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD--GRTPLHYAAKEGHKEIVKLLIS 124
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+N +++ T L LA G E+V LL
Sbjct: 125 KGADVNTS-DSDGRTPLDLAREHGNEEIVKLL 155
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
++S+ T L A GH+E+V+LL+S+GAD+ +D G TPL AA GH ++V +L++
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A+ + TPL A G E+V+LL+++GA+ + TPL LA G I
Sbjct: 93 GADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEI 151
Query: 127 IKLLLTHGA 135
+KLL G
Sbjct: 152 VKLLEKQGG 160
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A G + V L++ A+V G TPL AA G+ E+ ++L+ KGADVNA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
S T L AA +GH V+LL+SKGA V K+ G +PL AA GH +V+LL
Sbjct: 68 --SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
GAD+++ D+ + L A G+ + V+ +
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + + L++ GADVNA S T L AA +GH V+LL+SKGA V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASD--SDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+ G +PL AA GH +V+LL GAD++++D+ + L A ++GH + V+ +++
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 337 VAQF 340
A
Sbjct: 126 GADV 129
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
S+LG L+ AA NG+ VK L++ G+D+NA R T L A G EVV LL+ +
Sbjct: 2 SELG-KRLIEAAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISK 59
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
A+V + G TPL AA G+ EV ++L+ KGADVNA S T L AA+ GH
Sbjct: 60 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGHKE 117
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
V+LL+SKGA V + G +PL LA G+ VV+LL K G
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L A G+++ V+ L+ GAD+ D G TPL AA GH +VV +L++ AD+ A+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
+ TPL A G EVV+LL+++GA+ ++ TPL AA G+ ++KLL++ G
Sbjct: 68 SDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 126
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
A++N T G +PL LA +G+ VKLL G
Sbjct: 127 ADVN--TSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
LI AA G+ V L+ + AD+ A S+ TPL A G EVV+LL+++GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL AA G+ ++KLL++ GA++N++ G +PL AA NGH VKLL+
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLIS 124
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+N R T L LA G EVV LL
Sbjct: 125 KGADVNTSDSDGR-TPLDLAREHGNEEVVKLL 155
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A G + V L++ A+V G TPL AA G+ EV ++L+ KGADVNA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
S T L AA+ GH V+LL+SKGA V K+ G +PL AA GH VV+LL
Sbjct: 68 --SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
GAD+++ D+ + L A G+ + V+ +
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 1/129 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
++S+ T L A GH+E+V+LL+S+GAD+ +D G TPL AA GH +VV +L++
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A+ + TPL A G EVV+LL+++GA+ + TPL LA G +
Sbjct: 93 GADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEV 151
Query: 127 IKLLLTHGA 135
+KLL G
Sbjct: 152 VKLLEKQGG 160
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + + L++ GADVNA S T L AA+ GH V+LL+SKGA V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASD--SDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
K+ G +PL AA GH VV+LL GAD++++D+ + L A GH + V+ ++
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL H AD+ A +++
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKM 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
DTPL LA G E+VE+LL GA+ + +TPL LAA G++ I+++LL +GA++
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V +G TPL AA G++E+ VLL GADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD--K 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
DT L +AA GH VE+LL GA V + G +PL LAA+ GHL +VE+L K+GAD
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ ++ + T L LA +G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V K G TPL AA G++E+ VLL GADVNA T L
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AAD GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 119 LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ + K TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G++ I+++LL +GA++N+ G +PL LAA GH V++LL
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT--DTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA S T L +AA KGH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAED--DSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+K G++PL LAA GHL +VE+L K+GAD+++ D + L A GH++ V ++ +
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV++E +S T L LA GH E+VE+LL GAD+ DK G TPL LAA GH ++V+
Sbjct: 39 DVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVE 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + AD+ A ++ TPL LA G E+VE+LL GA+ ++ T ++
Sbjct: 98 VLLKNGADVNA-TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 122 GYVNIIKLL 130
G ++ ++L
Sbjct: 157 GNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G+TPL LAA+ GH ++V++LL + AD+ A S+ T
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-SDLT 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA + G E+VE+LL GA+ + +TPL LAA G++ I+++LL HGA++
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G TPL AAS G++E+ VLL GADVNA +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA GH VE+LL GA V + G++PL LAA GHL +VE+L KHGAD
Sbjct: 81 I--TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ TPL LA S G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+++ TPL LAA+ G++ I+++LL HGA++N+ G +PL LAA GH V++LL
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDND--GHTPLHLAAKYGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA + T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA--TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA GHL +VE+L KHGAD+++ DN + L A + GH++ V ++ H
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 92/167 (55%), Gaps = 4/167 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA + + T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAASNGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V TG+TPL AA+ G++E+ VLL GADVNA + T L
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA--YDNDGHTPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
+AA GH VE+LL GA V ++K G + ++ + G+ + E+L
Sbjct: 119 LAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
T+++ T L LA + GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL H
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A + TPL LA G E+VE+LL GA+ ++ T ++ G ++
Sbjct: 103 GADVNAY-DNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 127 IKLL 130
++L
Sbjct: 162 AEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA +GH ++V++LL H AD++A S+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVF 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + TPL LAA GY+ I+++LL HGA++
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ T TPL LA G E+VE+LL GA+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+V YTPL LAA G++ I+++LL +GA++N+ G++PL LAA G+ V++LL
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD--GMTPLHLAAKWGYLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V TG TPL AA G++E+ VLL GADV+A V
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA GH VE+LL GA V + G +PL LAA G+L +VE+L KHGAD
Sbjct: 81 Y--TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ + G +PL LAA +GH V++LL G+D++A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNT--GTTPLHLAAYSGHLEIVEVLLKHGADVDAS-D 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
T L LA + G E+V +LL A+V G+TPL AA GY+E+ VLL GA
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 138 DVNAQDKFGK--TAFDISIDNGNEDLAEIL 165
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA ++ T L +AA GH VE+LL GA V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAAD--NTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA GHL +VE+L K+GAD+++ D+ ++ L A + G+++ V ++ H
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD++ D G+TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 MDSDGM-TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DVD+ + T L LA GH E+VE+LL GAD+ D G TPL LAA G+ ++V+
Sbjct: 72 DVDASDVFGY-TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
+LL H AD+ AQ + K T ++ G ++ E+L
Sbjct: 131 VLLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G+TPL LAA GH ++V++LL AD+ A+ ++
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ YTPL LAA G++ I+++LL GA++
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G E+VE+LL GA+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ YTPL LAA G++ I+++LL GA++N++ K G +PL LAA GH V++LL
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 AGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V + K G TPL AA G++E+ VLL GADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA +GH VE+LL GA V K+K G +PL LAA GHL +VE+L K GAD
Sbjct: 81 Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ + + T L LA +G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V + K G TPL AA G++E+ VLL GADVNA T L
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
+AA +GH VE+LL GA V ++K G + ++ + G+ + E+L
Sbjct: 119 LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA +GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
K+K G +PL LAA GHL +VE+L K GAD++++D + L A R+GH++ V ++
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + + T L LA GH E+VE+LL GAD+ +DK G+TPL LAA GH ++V+
Sbjct: 39 DVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL AD+ A+ ++ TPL LA G E+VE+LL GA+ ++ T ++
Sbjct: 98 VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 156
Query: 122 GYVNIIKLL 130
G ++ ++L
Sbjct: 157 GNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 7/150 (4%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D +G TPL LAA GH ++V++LL H AD+ A R
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA---RD 77
Query: 78 KD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
D TPL LA G E+VE+LL GA+ ++ TPL LAA G++ I+++LL HGA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 136 EINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
++N++ K G + ++ NG+ ++L
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ TPL LA G E+VE+LL GA+ R
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ +TPL LAA G++ I+++LL +GA++N++ G++PL LAA GH V++LL
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ--DAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA + +T L LA + G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHP 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V R G TPL AA G++E+ VLL GADVNA T L
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AAD+GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 119 LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G TPL AA G+ E+ VLL GADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AAD GH VE+LL GA V ++ G +PL LAA+ GHL +VE+L KHGAD
Sbjct: 81 W--TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA S T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGS--TPLHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
++ G +PL LAA+ GHL +VE+L K+GAD+++QD ++ L A +GH++ V ++ H
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ RD G+TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
Q TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 QDAYGL-TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G TPL AA G++E+ VLL GADVNA S
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD--S 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AAD+GH VE+LL GA V + G +PL LAAN GHL +VE+L KHGAD
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G+TPL LAA GH ++V++LL + AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-DSL 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G EVVE+LL GA+ + + +TPL LAA+ G++ I+++LL HGA++
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A S+ TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G++ ++++LL +GA++N+ + G +PL LAA GH V++LL
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHN--GFTPLHLAANIGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA T L LA + G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNASDHVGW-TPLHLAAYFGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G+TPL AA G++EV VLL GADVNA + T L
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAN--DHNGFTPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AA+ GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 119 LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGW--TPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA+ GHL VVE+L K+GAD+++ D+ + L A GH++ V ++ H
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAA GH +VV++LL + AD+ A
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
++ TPL LA + G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 -NDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KLLL GA++N+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ K G +PL LAA NGH VKLLL+ G+D+NA+ + N T L LA G EVV LL
Sbjct: 64 K--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120
Query: 200 LDRKA 204
L+ A
Sbjct: 121 LEAGA 125
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV +LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
+ A+ + + TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KL
Sbjct: 61 VNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 130 LLTHGA 135
LL GA
Sbjct: 120 LLEAGA 125
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
N T L LA G EVV LLL+ A+V + K G TPL AA G++EV ++LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
VNA + T L +AA GH V+LLL GA V K+K G +PL LAA GHL VV+
Sbjct: 61 VNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 299 LLCKHGA 305
LL + GA
Sbjct: 119 LLLEAGA 125
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL AA G++EV ++LL+ GADVNA + T L +AA GH V+LLL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
V K+K G +PL LAA GHL VV+LL + GAD++++D + L A R GH++ V+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 333 MV 334
++
Sbjct: 120 LL 121
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL LAA NGH VKLLL+ G+D+NA+ + N T L LA G EVV LLL+ A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
V + K G TPL AA G++EV ++LL+ GADVNA + T L +AA GH V+
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVK 118
Query: 266 LLLSKGA 272
LLL GA
Sbjct: 119 LLLEAGA 125
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + N T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV
Sbjct: 27 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGA 102
+LL AD+ A+ + + TPL LA G EVV+LLL GA
Sbjct: 86 LLLEAGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 125
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A GR + V +L+ A+V G TPL AA G++E+ VLL GADVNA
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
S T L +AA GH VE+LL GA V K+ G +PL LAAN GHL +VE+L K+GAD
Sbjct: 81 S--TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G+TPL LAA GH ++V++LL + AD+ A +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY-DTL 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ + TPL LAA+ G++ I+++LL +GA++
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISINNGNEDLAEIL 165
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNA-ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G++ I+++LL +GA++N++ + GI+PL LAA GH V++LL
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDN--GITPLHLAANRGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISINNGNEDLAEIL 165
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA V T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G++PL LAA+ GHL +VE+L K+GAD++++D+ ++ L A +GH++ V ++ +
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA + T L LA + G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGRDDEVRILMANGADVNAA-DVVGWTPLHLAAYWGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G TPL AA G++E+ VLL GADVNA + T L
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--DNGITPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AA++GH VE+LL GA V ++K G + ++ N G+ + E+L K
Sbjct: 119 LAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ +G +PL LAA GH V++LL G+D+NA +
Sbjct: 21 AARAGRDDEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY-D 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
T +T L LA G E+V +LL A+V + G+TPL AA+ G++E+ VLL GA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ + G+ E+L
Sbjct: 138 DVNAQ--DKFGKTAFDISINNGNEDLAEIL 165
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ + TPL LA + G E+VE+LL GA+ ++ T ++ + G ++ ++L
Sbjct: 109 KDDNGI-TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + N T L LA GH E+VE+LL GAD+ +DK G T ++ G++ + +
Sbjct: 105 DVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Query: 62 IL 63
IL
Sbjct: 164 IL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA NG+ VK LL+ G+D NA R T L A G E+V LLL + A+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
G TPL AA G+ E+ ++LL KGAD NA S T L AA+ GH V+LLLS
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
KGA + G +PL LA G+ +V+LL K G
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
LI AA G+ V LL + AD A S+ TPL A G E+V+LLL++GA+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA-SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL AA G+ I+KLLL+ GA+ N++ G +PL AA NGH VKLLL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--GRTPLHYAAENGHKEIVKLLLS 124
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D N R T L LA G E+V LL
Sbjct: 125 KGADPNTSDSDGR-TPLDLAREHGNEEIVKLL 155
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L A G+++ V+ LL GAD D G TPL AA GH ++V +LL+ AD A+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
+ TPL A G E+V+LLL++GA+ ++ TPL AA G+ I+KLLL+ G
Sbjct: 68 SDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
A+ N T G +PL LA +G+ VKLL G
Sbjct: 127 ADPN--TSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
++S+ T L A GH+E+V+LLLS+GAD +D G TPL AA GH ++V +LL+
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD A+ + TPL A G E+V+LLL++GA+ + TPL LA G I
Sbjct: 93 GADPNAKDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEI 151
Query: 127 IKLLLTHGA 135
+KLL G
Sbjct: 152 VKLLEKQGG 160
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A G + V LL+ A+ G TPL AA G+ E+ ++LL KGAD NA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-- 65
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
S T L AA+ GH V+LLLSKGA K+ G +PL AA GH +V+LL
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
GAD ++ D+ + L A G+ + V+ +
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + + LL+ GAD NA S T L AA+ GH V+LLLSKGA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA--SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+ G +PL AA GH +V+LL GAD +++D+ + L A GH + V+ +++
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 337 VA 338
A
Sbjct: 126 GA 127
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V +GLTPL AA+ G++E+ VLL GADVNA +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
S T L +AA GH VE+LL GA V + G++PL LAA GHL +VE+L KHGAD
Sbjct: 81 S--TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAAT GH ++V++LL H AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIM 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + TPL LAA G++ I+++LL HGA++
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNG 157
N++ K G + ++ NG
Sbjct: 140 NAQ--DKFGKTAFDISIDNG 157
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ + TPL LA + G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
++ TPL LAA G++ I+++LL HGA++N+ G +PL LAA+ GH V++LL
Sbjct: 77 DIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV--DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA +S T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G++PL LAA GHL +VE+L KHGAD+++ D + L A GH++ V ++ H
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ S G++PL LAA GH V++LL G+D+NA I+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDAS--GLTPLHLAATYGHLEIVEVLLKHGADVNA-ID 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+T L LA G E+V +LL A+V G TPL AA G++E+ VLL GA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
T+++ T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL H
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A + DTPL LA G E+VE+LL GA+ ++ T ++ G ++
Sbjct: 103 GADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 127 IKLL 130
++L
Sbjct: 162 AEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V +GLTPL AA+ G++E+ VLL GADVNA +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
S T L +AA GH VE+LL GA V + G++PL LAA GHL +VE+L KHGAD
Sbjct: 81 S--TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAAT GH ++V++LL H AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIX 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + TPL LAA G++ I+++LL HGA++
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNG 157
N++ K G + ++ NG
Sbjct: 140 NAQ--DKFGKTAFDISIDNG 157
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ + TPL LA + G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
++ TPL LAA G++ I+++LL HGA++N+ G +PL LAA+ GH V++LL
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV--DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA +S T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G++PL LAA GHL +VE+L KHGAD+++ D + L A GH++ V ++ H
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ S G++PL LAA GH V++LL G+D+NA I+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDAS--GLTPLHLAATYGHLEIVEVLLKHGADVNA-ID 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+T L LA G E+V +LL A+V G TPL AA G++E+ VLL GA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
T+++ T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL H
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A + DTPL LA G E+VE+LL GA+ ++ T ++ G ++
Sbjct: 103 GADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 127 IKLL 130
++L
Sbjct: 162 AEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA +GH ++V++LL H AD++A ++
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA-ADVY 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ +++ TPL LAA G++ I+++LL +GA++
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNG 157
N++ K G + ++ NG
Sbjct: 140 NAQ--DKFGKTAFDISIDNG 157
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V TGLTPL AA G++E+ VLL GADV+A V
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA GH VE+LL GA V + G++PL LAA+ GHL +VE+L K+GAD
Sbjct: 81 F--TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A + T TPL LA G E+VE+LL GA+ +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINS--RTGSKLGISPLMLAAMNGHTAAVKLL 165
+V +TPL LAA G++ I+++LL +GA++N+ TGS +PL LAA GH V++L
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEGHLEIVEVL 132
Query: 166 LDMGSDINAQIETNRNTALTLACFQGRHEV 195
L G+D+NAQ + + TA ++ G ++
Sbjct: 133 LKYGADVNAQDKFGK-TAFDISIDNGNEDL 161
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA ++ T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V+ G TPL AA G++E+ VLL GADVNA + S T L
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
+AAD+GH VE+LL GA V ++K G + ++ + G
Sbjct: 119 LAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD++ D GFTPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
+ T TPL LA G E+VE+LL GA+ ++ T ++ G ++ K
Sbjct: 109 -FDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA V ++ T L +AA GH VE+LL GA V+
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNA--VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA GHL +VE+L K+GAD+++ D + L A +GH++ V ++ +
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ + G++PL LAA++GH V++LL G+D++A +
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNT--GLTPLHLAAVSGHLEIVEVLLKHGADVDAA-D 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
T L LA G E+V +LL A+V TG TPL AA G++E+ VLL GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKG 259
DVNA TA I+ D G
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNG 157
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+ G TPL AA+ G++E+ VLL GADVNA V +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA--VDT 66
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+ T L +AA GH VE+LL GA V K+ G +PL+LAA GHL +VE+L KHGAD
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 307 IDSQD 311
+++QD
Sbjct: 127 VNAQD 131
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD D G TPL +AA GH ++V++LL + AD+ A +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-VDTN 67
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA S G E+VE+LL GA+ ++ + TPL LAA G++ I+++LL HGA++
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Query: 138 NSR 140
N++
Sbjct: 128 NAQ 130
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA+ N+ G +PL +AA GH V++LL G+D+NA ++
Sbjct: 9 AARAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-VD 65
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
TN T L LA G E+V +LL A+V + TG+TPL AA G++E+ VLL GA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 126 DVNAQ--DKFGKTAFDISIDIGNEDLAEIL 153
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GAD NA T L +AA GH VE+LL GA V
Sbjct: 6 LLEAARAGQDDEVRILMANGADANA--YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA+ GHL +VE+L K+GAD++++D ++ L A GH++ V ++ H
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 124 GADVNAQDKFGK 135
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L +A A GH E+VE+LL GAD+ D G TPL LAA+ GH ++V++LL + AD+ A
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
+ + T TPL LA G E+VE+LL GA+
Sbjct: 97 K-DATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
++N T L LA + GH E+VE+LL GAD+ +D G TPL LAA GH ++V++LL H
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELL 97
AD+ AQ + K T ++ G ++ E+L
Sbjct: 124 GADVNAQDKFGK-TAFDISIDIGNEDLAEIL 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ + DTPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ S TPL LAA G++ I+++LL +GA++N+ +G +PL LAA GH V++LL
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G TPL AA G++E+ VLL GADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
S T L +AA +GH VE+LL GA V + G++PL LAA+ GHL +VE+L K+GAD
Sbjct: 81 S--TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ +T +T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V +G TPL AA G++E+ VLL GADVNA S T L
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
+AAD GH VE+LL GA V ++K G + ++ + G+ + E+L
Sbjct: 119 LAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL + AD+ A + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL-DFS 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + TPL LAA G++ I+++LL +GA++
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA + DT L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAED--TYGDTPLHLAARVGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G++PL LAA GHL +VE+L K+GAD+++ D + L A GH++ V ++ +
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV++E ++ DT L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V+
Sbjct: 39 DVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + AD+ A + TPL LA G E+VE+LL GA+ ++ T ++
Sbjct: 98 VLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDN 156
Query: 122 GYVNIIKLL 130
G ++ ++L
Sbjct: 157 GNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A + TPL LA + G+ E+VE+LL GA+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGL-TPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ + TPL LAA G++ I+++LL HGA++N+ + G +PL LAA++G V++LL
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY--DRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + TA ++ QG+ ++ +L
Sbjct: 127 HGADVNAQ-DALGLTAFDISINQGQEDLAEIL 157
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V GLTPL AA+ G +E+ VLL GADVNA S
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD--S 70
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+ T L +AA GH VE+LL GA V ++ G +PL LAA G L +VE+L KHGAD
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 307 IDSQDNRKVSCLMAAFRKGH 326
+++QD ++ + +G
Sbjct: 131 VNAQDALGLTAFDISINQGQ 150
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A A G ++ V +L++ GAD+ D G TPL LAA G ++V++LL + AD+ A S+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA-SDSA 71
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + + +TPL LAA G + I+++LL HGA++
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ LG++ ++ G ++L
Sbjct: 132 NAQ--DALGLTAFDISINQGQEDLAEIL 157
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
T+ N T L LA A G E+VE+LL GAD+ D G TPL LAA GH ++V++LL H
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 67 KADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
AD+ A +R TPL LA G+ E+VE+LL GA+ ++ T ++ + G ++
Sbjct: 95 GADVNAY-DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 127 IKLL 130
++L
Sbjct: 154 AEIL 157
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA+ G + R+L+ GADVNA + T L +AA G VE+LL GA V
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNA--TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA 67
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA GHL +VE+L KHGAD+++ D + L A G ++ V ++ H
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 337 VA 338
A
Sbjct: 128 GA 129
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G LG L+ AA G V++L+ G+D+NA + N T L LA G+ E+V +LL
Sbjct: 3 GQDLG-KKLLEAAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIVEVLLK 60
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
A+V G+TPL AA G++E+ VLL GADVNA + T L +AA G
Sbjct: 61 NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNA--YDRAGWTPLHLAALSGQL 118
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
VE+LL GA V ++ G + ++ N G + E+L
Sbjct: 119 EIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL L GH +++++LL + AD+ A S+++
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-SDKS 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + YTPL LAA G++ I+++LL +GA++
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ TPL L + G E++E+LL A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-NDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ S +TPL LAA G++ I+++LL +GA++N+ G +PL LAA +GH V++LL
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G+TPL + G++E+ VLL ADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD--K 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
S T L +AA +GH VE+LL GA V + +G +PL LAA GHL +VE+L K+GAD
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ GI+PL L NGH +++LL +D+NA +
Sbjct: 21 AARAGQDDEVRILMANGADVNAN--DWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDK 78
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ T L LA ++G E+V +LL A+V G TPL AA G++E+ VLL GA
Sbjct: 79 SGW-TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L + + GH +E+LL A V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGI--TPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+K G +PL LAA GHL +VE+L K+GAD+++ D + + L A GH++ V ++ +
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L L GH E++E+LL AD+ DK G+TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 MDYQGY-TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL + AD+ A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ +TPL LAA G++ I+++LL +GA++
Sbjct: 81 A-TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++ TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G++ I+++LL HGA++N++ G +PL LAA +GH V++LL
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE--GFTPLHLAAYDGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V G TPL AA G++E+ VLL GADVNA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+ T L +AAD GH VE+LL GA V K+ +G +PL LAA GHL +VE+L K+GAD
Sbjct: 81 A--TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGH--TPLHLAAKTGHLEIVEVLLKYGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA+ GHL +VE+L KHGAD++++D + L A GH++ V ++ +
Sbjct: 76 WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N+ LG +PL LAA GH V++LL G+D+NA +
Sbjct: 21 AARAGQDDEVRILMANGADVNAT--DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW-D 77
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
T L LA G E+V +LL A+V + G TPL AA G++E+ VLL GA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
DVNA TA I+ D G+ E+L
Sbjct: 138 DVNAQDKFGK--TAFDISIDNGNEDLAEIL 165
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL H AD+ A
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ + TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 K-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V R TG TPL AA G++E+ VLL GADVNA S
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD--S 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L +AA +GH VE+LL GA V + G +PL LAA GHL +VE+L K+GAD
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ RD G+TPL LAA GH ++V++LL + AD+ A+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSL 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ + +TPL LAA G++ I+++LL +GA++
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ + T TPL LA G E+VE+LL GA+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ TPL LAA G++ I+++LL +GA++N+ G +PL LAA GH V++LL
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH--GFTPLHLAAKRGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 NGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ T T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNARDFTGW-TPLHLAAHFGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V + G+TPL AA G++E+ VLL GADVNA S T L
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS--DSHGFTPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AA +GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 119 LAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+ G +PL LAA GHL +VE+L K+GAD+++ D+ + L A ++GH++ V ++ +
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ +D G TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
S+ TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 -SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
++S+ T L LA GH E+VE+LL GAD+ +DK G T ++ G++ + +IL
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A GR + V +L+ A+V +G TPL AA G++E+ VLL GADVNA V
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDH 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+ T L +AA GH VE+LL GA V + +G++PL LAA GHL +VE+L K+GAD
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 307 IDSQD 311
+++QD
Sbjct: 139 VNAQD 143
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G+TPL LAA GH ++V++LL + AD+ A +
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHA 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL LA G E+VE+LL GA+ ++ +TPL LAA G++ I+++LL +GA++
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
N++ K G + ++ NG+ ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ + + TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ + TPL LAA G++ I+++LL +GA++N+ G +PL LAAM GH V++LL
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME--GHTPLHLAAMFGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D+NAQ + + TA ++ G ++ +L
Sbjct: 135 NGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ + + T L LA F G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G+TPL AA G++E+ VLL GADVNA + T L
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+AA GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV++E S T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V+
Sbjct: 39 DVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + AD+ A ++ TPL LA G E+VE+LL GA+ ++ T ++
Sbjct: 98 VLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDN 156
Query: 122 GYVNIIKLL 130
G ++ ++L
Sbjct: 157 GNEDLAEIL 165
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA +S T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAED--ASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ G +PL LAA GHL +VE+L K+GAD+++ D + L A GH++ V ++ +
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 136 GADVNAQDKFGK 147
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
+ T+ + TAL AC+ GH E+VE LL G + +D G++PL +AA+AG D++V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
A + A ++ TPL A S R+E+ +LL GAN + ++ + T + AA+ G +
Sbjct: 94 GKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
+I +LL + A N + G +PL LA KLL+ G+ I
Sbjct: 153 KMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 198
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
+LA SG E+ E +L + + T L A S G+ I++ LL G +N +
Sbjct: 12 NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
+ G SPL +AA G VK LL G+ +NA + N T L A + RHE+ +LL+
Sbjct: 72 A--GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
AN + + T + AA+ G +++ +LL A N + +T L +A D+
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
+LL+S+GA + ++NK+ +PL +A G
Sbjct: 187 EAKLLVSQGASIYIENKEEKTPLQVAKGG 215
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 4/207 (1%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA +G EEL E +L+ + D+ T L A +AGH ++V+ LL + + +
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+PL +A S GR E+V+ LL +GA N + TPL AAS I +LL GA
Sbjct: 73 GW-SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
+++ + + + AA G+ + +LL + N Q +T NT L LAC + R E
Sbjct: 132 PDAKDHYE--ATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVEEA 188
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASG 223
LL+ + A++ K TPL A G
Sbjct: 189 KLLVSQGASIYIENKEEKTPLQVAKGG 215
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ L A GHT V+ LL +G +N + + + L +A GR E+V LL + A V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
+ G TPL AAS E+ +LL+ GA+ P ++D TA+ AA KG+ +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
+ +LL A +++ +GN+PL LA + + +LL GA I ++ + + L A
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA----LTIAADKGHCRFVELLLSK 270
T L A S G+ E+ LL G VN +D A L IAA G V+ LL K
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
GAQV N+ G +PL AA+ + +L + GA+ D++D+ + + + A KG++K +
Sbjct: 96 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 331 RWMVNHVA 338
++ + A
Sbjct: 156 HILLYYKA 163
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A + E+ +LL GA+ + +D T + AA G+ K++ ILL +KA
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 167
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
Q + +TPL LAC R E +LL+++GA+ N + TPL +A G
Sbjct: 168 Q-DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 215
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
+ T+ + TAL AC+ GH E+VE LL G + +D G++PL +AA+AG D++V LL
Sbjct: 35 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
A + A ++ TPL A S R+E+ +LL GAN + ++ + T + AA+ G +
Sbjct: 95 GKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
+I +LL + A N + G +PL LA KLL+ G+ I
Sbjct: 154 KMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 199
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
+LA SG E+ E +L + + T L A S G+ I++ LL G +N +
Sbjct: 13 NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
+ G SPL +AA G VK LL G+ +NA + N T L A + RHE+ +LL+
Sbjct: 73 A--GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
AN + + T + AA+ G +++ +LL A N + +T L +A D+
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD--TEGNTPLHLACDEERVE 187
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
+LL+S+GA + ++NK+ +PL +A G
Sbjct: 188 EAKLLVSQGASIYIENKEEKTPLQVAKGG 216
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 4/207 (1%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA +G EEL E +L+ + D+ T L A +AGH ++V+ LL + + +
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+PL +A S GR E+V+ LL +GA N + TPL AAS I +LL GA
Sbjct: 74 GW-SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
+++ + + + AA G+ + +LL + N Q +T NT L LAC + R E
Sbjct: 133 PDAKDHYE--ATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVEEA 189
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASG 223
LL+ + A++ K TPL A G
Sbjct: 190 KLLVSQGASIYIENKEEKTPLQVAKGG 216
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ L A GHT V+ LL +G +N + + + L +A GR E+V LL + A V
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
+ G TPL AAS E+ +LL+ GA+ P ++D TA+ AA KG+ +
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKM 155
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
+ +LL A +++ +GN+PL LA + + +LL GA I ++ + + L A
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA----LTIAADKGHCRFVELLLSK 270
T L A S G+ E+ LL G VN +D A L IAA G V+ LL K
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
GAQV N+ G +PL AA+ + +L + GA+ D++D+ + + + A KG++K +
Sbjct: 97 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 331 RWMVNHVA 338
++ + A
Sbjct: 157 HILLYYKA 164
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A + E+ +LL GA+ + +D T + AA G+ K++ ILL +KA
Sbjct: 109 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 168
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
Q + +TPL LAC R E +LL+++GA+ N + TPL +A G
Sbjct: 169 Q-DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 216
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
+ T+ + TAL AC+ GH E+VE LL G + +D G++PL +AA+AG D++V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
A + A ++ TPL A S R+E+ +LL GAN + ++ D T + AA+ G +
Sbjct: 94 VKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
++ +LL + A N + G +PL LA K L+ G+ I
Sbjct: 153 KMVHILLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 5/209 (2%)
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
+LA SG E+ E +L + + T L A S G+ I++ LL G +N +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
+ G SPL +AA G VK LL G+ +NA + N T L A + RHE+ +LL+
Sbjct: 72 A--GWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
AN + + T + AA+ G +++ +LL A N + +T L +A D+
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
+ L+++GA + ++NK+ +PL +A G
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 4/207 (1%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA +G +EL E +L+ + D+ T L A +AGH ++V+ LL + + +
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+PL +A S GR E+V+ LL +GA+ N + TPL AAS I +LL GA
Sbjct: 73 GW-SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA- 130
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
N + + AA G+ V +LL + N Q +T NT L LAC + R E
Sbjct: 131 -NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEA 188
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASG 223
L+ + A++ K TPL A G
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ L A GHT V+ LL +G +N + + + L +A GR E+V LL + A+V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
+ G TPL AAS E+ +LL+ GA+ P ++D TA+ AA KG+ +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
V +LL A +++ +GN+PL LA + + + L GA I ++ + + L A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+ + + TAL AC G E+V LL V + G +PL AAS G E+ + LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
KGA VNA V + T L AA K +LL GA + K+ + + AA G+L
Sbjct: 95 KGAHVNA--VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
+V +L + A + QD + L A + V+ +++V A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A + E+ +LL GA+ + +D T + AA G+ K+V ILL +KA
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
Q + +TPL LAC R E + L+T+GA+ N + TPL + A GG I+K L
Sbjct: 168 Q-DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV-AKGGLGLILKRL 223
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
+ T+ + TAL AC+ GH E+VE LL G + +D G++PL +AA+AG D++V LL
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
A + A ++ TPL A S R+E+ +LL GAN + ++ D T + AA+ G +
Sbjct: 94 VKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
++ +LL + A N + G +PL LA K L+ G+ I
Sbjct: 153 KMVHILLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 5/209 (2%)
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
+LA SG E+ E +L + + T L A S G+ I++ LL G +N +
Sbjct: 12 NLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
+ G SPL +AA G VK LL G+ +NA + N T L A + RHE+ +LL+
Sbjct: 72 A--GWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
AN + + T + AA+ G +++ +LL A N + +T L +A D+
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
+ L+++GA + ++NK+ +PL +A G
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 4/207 (1%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA +G +EL E +L+ + D+ T L A +AGH ++V+ LL + + +
Sbjct: 13 LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+PL +A S G E+V+ LL +GA+ N + TPL AAS I +LL GA
Sbjct: 73 GW-SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA- 130
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
N + + AA G+ V +LL + N Q +T NT L LAC + R E
Sbjct: 131 -NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEA 188
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASG 223
L+ + A++ K TPL A G
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ L A GHT V+ LL +G +N + + + L +A G E+V LL + A+V
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
+ G TPL AAS E+ +LL+ GA+ P ++D TA+ AA KG+ +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
V +LL A +++ +GN+PL LA + + + L GA I ++ + + L A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+ + + TAL AC G E+V LL V + G +PL AAS G E+ + LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
KGA VNA V + T L AA K +LL GA + K+ + + AA G+L
Sbjct: 95 KGAHVNA--VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
+V +L + A + QD + L A + V+ +++V A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A + E+ +LL GA+ + +D T + AA G+ K+V ILL +KA
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
Q + +TPL LAC R E + L+T+GA+ N + TPL + A GG I+K L
Sbjct: 168 Q-DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV-AKGGLGLILKRL 223
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%)
Query: 105 EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164
EH+N +PL AA G+V+I +L+ GA I+ T S+ +PLM AA N H AVK
Sbjct: 7 EHQN--KRSPLHAAAEAGHVDICHMLVQAGANID--TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 165 LLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASG 223
L+ G+ ++ + + +T L LA +G +EVV LL + +V + G TP++ A
Sbjct: 63 LIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
+V++ ++LL KG+D+N + + L AA G E+LL+ + N G+S
Sbjct: 122 KHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 284 PLWLAANGGHLSVVELLCKHGADI 307
PL +AA V L +D+
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDV 203
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 9/221 (4%)
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
ME Q++R+ PL A G ++ +L+ GAN + + TPL AA ++ +K
Sbjct: 6 MEHQNKRS---PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLAC 188
L+ GA ++ + G + L LAA GH V+ LL G D+N Q + T + A
Sbjct: 63 LIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWAT 119
Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR 248
++V LLL + +++ R L AA G V++ +LL D++A V
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VNIHG 177
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
D+ L IAA + V L LS+ + V +KNK+G +PL A+
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 9/215 (4%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N + L A GH ++ +L+ GA+I+ + TPL+ AA H + V L+ A
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD---YTPLSLAASGGYVNI 126
++ + + T L LA G YEVV+ LL+ G + N D +TP+ A +V++
Sbjct: 70 VDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 127 IKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL 186
+KLLL+ G++IN R + I L AA +G ++LL D++A + + ++ L +
Sbjct: 127 VKLLLSKGSDINIRDNEE-NIC-LHWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLHI 183
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
A + R++ V L L R ++V + K G TPL A+
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 7/193 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL-NHKADME 71
T L A H E V+ L+ GA ++ +D +G T L LAA GH +VV LL N + D+
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
Q + TP+ A ++V+LLL++G++ R+ + L AA G V+I ++LL
Sbjct: 106 CQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
A+ + + G SPL +AA V L L SD+ + N+ L C
Sbjct: 165 --AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK---NKEGETPLQCASL 219
Query: 192 RHEVVSLLLDRKA 204
+V S L KA
Sbjct: 220 NSQVWSALQMSKA 232
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
+EH+ K +PL AA G+V++ +L+ GA+++ + T L AA+ H V+
Sbjct: 6 MEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVK 61
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA-DIDSQDNRKVSCLMAAFRK 324
L+ GA V+ K+ +G++ L LAA GH VV+ L +G D++ QD+ + ++ A
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 325 GHVKAVRWMVN 335
HV V+ +++
Sbjct: 122 KHVDLVKLLLS 132
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 4/184 (2%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
SPL AA GH +L+ G++I+ E R T L A E V L+ A V+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGA-DVNAPPVPSSRDTALTIAADKGHCRFVEL 266
+ G T L AA G+ EV + LL G DVN T + A + H V+L
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD--DGGWTPMIWATEYKHVDLVKL 129
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LLSKG+ + +++ + N L AA G + + E+L D+ + + S L A R+
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 327 VKAV 330
V
Sbjct: 190 YDCV 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
++E +NK+ SPL AA GH+ + +L + GA+ID+ + + LM A H++AV++
Sbjct: 5 KMEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 333 MVNHVAQF-PSDQE 345
++ A P D E
Sbjct: 63 LIKAGALVDPKDAE 76
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G + S+ GS SPL +AA++G + LLL G++ A+ ++ L LAC QG
Sbjct: 78 GVNVTSQDGS----SPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHF 132
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
+VV LLD A + +G TPL+ A SGG+ E+ +LL GA +NA + +TAL
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS--NNKGNTALH 190
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKK 280
A + H VELLL GA V+V NK+
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQVLNKR 217
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
++ E H CA + L ++ S G + + G +PL +AA G ++ +LL
Sbjct: 48 ADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQDGSSPLHVAALHGRADLIPLLL 106
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
H A+ A++ + PL LAC G ++VV+ LL A +++S TPL A SGG+
Sbjct: 107 KHGANAGARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTAL 184
++ LLL HGA IN+ G + L A + H V+LLL G+ + N+
Sbjct: 166 ELVALLLQHGASINASNNK--GNTALHEAVIEKHVFVVELLLLHGASVQV---LNKRQRT 220
Query: 185 TLACFQGRHEVVSLL 199
+ C + +++ LL
Sbjct: 221 AVDCAEQNSKIMELL 235
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
++ G +PL AA G ++ +LL GA NA + + L +A +GH + V+ LL
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKA 329
A+ K+ GN+PL A +GGH +V LL +HGA I++ +N+ + L A + HV
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 330 VRWMVNHVA 338
V ++ H A
Sbjct: 201 VELLLLHGA 209
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
+ G V V ++ G+SPL +AA G ++ LL KHGA+ +++ + L A ++GH +
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 329 AVRWMVNHVAQFPSDQEMT 347
V+ +++ A+ P+ ++++
Sbjct: 134 VVKCLLDSNAK-PNKKDLS 151
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA + T L +AAD H VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGN--TPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+ G++PL LAA GHL +VE+L KHGAD+++QD
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A ++R +TPL LA E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ TPL LAA G++ I+++LL HGA++N++ K G + ++ NG+ ++L
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D+KG TPL LAA H ++V++LL H AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH-DND 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA G V +L++ GA V ++KGN+PL LAA+ HL +VE+L KHGAD+++ DN
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
+ L A GH++ V ++ H A + + +
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK 114
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA H E+VE+LL GAD+ D G TPL LAA GH ++V++LL H AD+ A
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
GS LG L+ AA G V++L+ G+D+NA + NT L LA E+V +LL
Sbjct: 11 GSDLG-KKLLEAARAGQDDEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLK 68
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
A+V G TPL AA G++E+ VLL GADVNA TA I+ D G+
Sbjct: 69 HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK--TAFDISIDNGNE 126
Query: 262 RFVELL 267
E+L
Sbjct: 127 DLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELL 267
+K G TPL AA G+ E + LL KGADVNA S+D T L +AA GH V+LL
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA----RSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
L+KGA V ++K GN+P LA GH +V+LL GAD++++
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
GSK G +PL AA NGH VK LL G+D+NA+ + NT L LA G E+V LLL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS 247
+ A+V R+K G TP A G+ E+ ++L KGADVNA SS
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
+TPL A G E V+ LL++GA+ R+ TPL LAA G+ I+KLLL GA++N
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
+R SK G +P LA NGH VKLL G+D+NA+
Sbjct: 70 AR--SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
+T L A GH E V+ LLS+GAD+ R K G TPL LAA GH ++V +LL AD+
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
A+S + +TP LA G +E+V+LL +GA+
Sbjct: 70 ARS-KDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 42 KKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG 101
K G TPL AA GH + V LL+ AD+ A+S + +TPL LA G E+V+LLL +G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
A+ R+ TP LA G+ I+KLL GA++N+R+
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
NT L A G E V LL + A+V R+K G TPL AA G+ E+ ++LL KGADVN
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 241 APPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVK 277
A S+D T +A GH V+LL +KGA V +
Sbjct: 70 A----RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
+T L AA GH V+ LLSKGA V ++K GN+PL LAA GH +V+LL GAD++
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 309 SQDNRKVSCLMAAFRKGHVKAVR 331
++ + A + GH + V+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVK 92
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 279 KKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
K GN+PL AA GH V+ L GAD++++ + L A + GH + V+ ++
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + A ++ +PL LA G + E+LL G +++ R
Sbjct: 6 LLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
D TPL +AAS G+ NI+++LL HGA++N++ L ++ L A + H V+LL+
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIK 121
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G+D++ Q + + TA ++ G ++ +L
Sbjct: 122 YGADVHTQSKFCK-TAFDISIDNGNEDLAEIL 152
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GA + +S L +AA GH E+LL G +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTS---PLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ K +PL +AA+ GH ++VE+L KHGAD++++D K++ L A H + V ++ +
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 337 VAQFPSDQEMTR 348
A + + +
Sbjct: 123 GADVHTQSKFCK 134
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 39/183 (21%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA T LG SPL LAA GH + ++LL G +A+ +
Sbjct: 9 AARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+R TPL AAS G+ + VLL GA
Sbjct: 66 VDR----------------------------------TPLHMAASEGHANIVEVLLKHGA 91
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV 297
DVNA + + TAL A + H VELL+ GA V ++K + ++ + G+ +
Sbjct: 92 DVNAKDML--KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149
Query: 298 ELL 300
E+L
Sbjct: 150 EIL 152
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GA D G +PL LAA GH ++LL +A++ +
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KV 66
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
TPL +A S G +VE+LL GA+ +++ T L A + +++LL+ +GA++
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 138 NSRT 141
++++
Sbjct: 127 HTQS 130
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L LA GH E+LL G + R K TPL +AA+ GH +V++LL H AD+ A+
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK- 96
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ K T L A EVVELL+ GA+ ++ T ++ G ++ ++L
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G +PL AA G+ VLL G +A T L +AA +GH VE+LL GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLLKHGA 91
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
V K+ + L A H VVELL K+GAD+ +Q
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L +A + GH +VE+LL GAD+ +D T L A H +VV++L+ + AD+
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
QS+ K T ++ G ++ E+L
Sbjct: 129 QSKFCK-TAFDISIDNGNEDLAEIL 152
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL AA G++EV ++LL+ GADVNA + T L +AA GH V+LLL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
V K+K G +PL LAA GHL VV+LL + GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KLLL GA++N+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
+ K G +PL LAA NGH VKLLL+ G+
Sbjct: 64 K--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
TPL LAA G++ ++KLLL GA++N++ K G +PL LAA NGH VKLLL+ G+D+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
NA+ + N T L LA G EVV LLL+ A
Sbjct: 62 NAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL LAA NGH VKLLL+ G+D+NA+ + N T L LA G EVV LLL+ A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
V + K G TPL AA G++EV ++LL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV +LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGA 102
+ A+ + + TPL LA G EVV+LLL GA
Sbjct: 61 VNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 92
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L +AA GH V+LLL GA V K+K G +PL LAA GHL VV+LL + GAD+++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
+D + L A R GH++ V+ ++
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
N T L LA G EVV LLL+ A+V + K G TPL AA G++EV ++LL+ GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
VNA + T L +AA GH V+LLL GA
Sbjct: 61 VNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + N T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV
Sbjct: 27 DVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 62 ILL 64
+LL
Sbjct: 86 LLL 88
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
G +PL LAA GHL VV+LL + GAD++++D + L A R GH++ V+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA + T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA--LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
++ G +PL LAA GHL +VE+L KHGAD+++QD
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A E TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGL-TPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ TPL LAA G++ I+++LL HGA++N++ K G + ++ NG+ ++L
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D+ G TPL LAA GH ++V++LL + AD+ A+ +
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-DNF 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL H AD+ A
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA G V +L++ GA V ++ G +PL LAA GHL +VE+L K+GAD++++DN
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
++ L A +GH++ V ++ H A + + +
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK 114
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA ++ + T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNA-LDEDGLTPLHLAAQLGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G+TPL AA G++E+ VLL GADVNA TA
Sbjct: 61 EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 39 HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
+RD TPL++A G + +D L+ + +E + + T L A R + E LL
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLL 88
Query: 99 TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
++G+N ++ S TPL + GY + LL HGA +N R G +PL++A+ G
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE--GETPLIVASKYGR 146
Query: 159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ VK LL++G+DI+A+ T TA A GR EV+ +
Sbjct: 147 SEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIKIF 186
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 39 HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
H DK G + ++ +D L N++ + TPL +AC G ++ L+
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLV 55
Query: 99 TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
E +++ T L A + I + LL+ G+ +N++ S G +PLM + + G+
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS--GKTPLMWSIIFGY 113
Query: 159 TAAVKLLLDMGSDINAQIETNRN----TALTLACFQGRHEVVSLLLDRKANVEHRAKTGL 214
+ LL+ G+++N +RN T L +A GR E+V LL+ A++ R TGL
Sbjct: 114 SEMSYFLLEHGANVN-----DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL 168
Query: 215 TPLMEAASGGYVEVGRVL 232
T A G EV ++
Sbjct: 169 TAEASARIFGRQEVIKIF 186
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
+S + T L +AC G E ++ L+ +E +D +G T LI A + + LL+
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
+++ + K TPL + G E+ LL GAN RN+ TPL +A+ G I+
Sbjct: 92 SNVNTKDFSGK-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150
Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
K LL GA+I++R + G++ A + G +K+ ++
Sbjct: 151 KKLLELGADISARDLT--GLTAEASARIFGRQEVIKIFTEV 189
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
T L +AC G + L++ +E + G T L+ A + + LL KG++VN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
S T L + G+ LL GA V +N +G +PL +A+ G +V+ L
Sbjct: 97 KDF--SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 302 KHGADIDSQD 311
+ GADI ++D
Sbjct: 155 ELGADISARD 164
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+PLM+A M G A+ L++ + + + +TAL A R + LL + +NV
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
+ +G TPLM + GY E+ LL+ GA+VN + +T L +A+ G V+ L
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG--ETPLIVASKYGRSEIVKKL 153
Query: 268 LSKGAQVEVKNKKG 281
L GA + ++ G
Sbjct: 154 LELGADISARDLTG 167
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
+R TPLM A G L++ + + S TAL A E L
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGS--TALIWAVKNNRLGIAEKL 87
Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
LSKG+ V K+ G +PL + G+ + L +HGA+++ ++ + L+ A + G
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 328 KAVR 331
+ V+
Sbjct: 148 EIVK 151
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 9 SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
++H + L AC GGH V++LL GA + TPL A +G V++LL H A
Sbjct: 34 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
++ +S+ +P+ A G E V L+ G N +H+ TPL LA +K
Sbjct: 94 SVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 151
Query: 129 LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
LL GA++N G SPL A LL+D G+D A+
Sbjct: 152 KLLESGADVNQGKGQD---SPLHAVARTASEELACLLMDFGADTQAK 195
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
GH+ + L+S+G + +PL A GH V ILL H A + + TP
Sbjct: 14 GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TP 72
Query: 82 LSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAASGGYVNIIKLLLTHGAEINSR 140
L AC G ++ V LLL GA+ + SD +P+ AA G+V + L+ +G I+ +
Sbjct: 73 LFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 141 TGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200
S LG +PL LA N A VK LL+ G+D+N +++ L E+ LL+
Sbjct: 131 I-SHLG-TPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVARTASEELACLLM 186
Query: 201 DRKANVEHRAKTGLTPL 217
D A+ + + G P+
Sbjct: 187 DFGADTQAKNAEGKRPV 203
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 7/208 (3%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+P+ A G + L+++G +PL A GG+++ +K+LL HGA++N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
T +PL A ++G V LLL G+ + Q E++ + + A +G E V+ L
Sbjct: 65 VTAD--WHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 120
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
+ N++H+ TPL A + LL+ GADVN +D+ L A
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ---GKGQDSPLHAVARTA 177
Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWL 287
LL+ GA + KN +G P+ L
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
SP+ AA++GH +++ L+ G +N I + + L AC G V +LL A V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--AADKGHCRFVE 265
TPL A G + +LL GA V P S D A I AA +GH V
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PES-DLASPIHEAARRGHVECVN 118
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
L++ G ++ K +PL+LA + V+ L + GAD++
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ ES+ + + A GH E V L++ G +I+H+ TPL LA V LL
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL 117
AD+ + +D+PL E+ LL+ GA+ + +N P+ L
Sbjct: 156 SGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA GH + L+S+G V + SPL A GGHLS V++L KHGA ++
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQ 351
+ L A G V ++ H A + ++ I
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIH 106
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EA G + R+L+ GADVNA + + T L +AA +GH VE+LL GA V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
++ G +PL LAA GHL +VE+L ++GAD+++QD
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ A AG D V IL+ + AD+ A + TPL LA G E+VE+LL GA+ R
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
++ TPL LAA+ G++ I+++LL +GA++N++ K G + ++ NG+ ++L
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL H AD+ A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ TPL LA + G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 81 R-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ RD G TPL LAAT GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ A G V++L+ G+D+NA + T L LA +G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V R G TPL AA+ G++E+ VLL+ GADVNA TA
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
V +L++ GA V + G +PL LAA GHL +VE+L KHGAD++++D + L A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
GH++ V ++ + A + + +
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGK 114
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
A G V +L +GAD+++ D+ V+ L A ++GH++ V ++ H A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EA G + R+L+ GADVNA + + T L +AA +GH VE+LL GA V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+ G +PL LAA GHL +VE+L ++GAD+++QD
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL H AD+ A S+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDSW 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA + G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAAT GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ A AG D V IL+ + AD+ A + TPL LA G E+VE+LL GA+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ TPL LAA+ G++ I+++LL +GA++N++ K G + ++ NG+ ++L
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ A G V++L+ G+D+NA + T L LA +G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G TPL AA+ G++E+ VLL+ GADVNA TA
Sbjct: 61 EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
V +L++ GA V + G +PL LAA GHL +VE+L KHGAD+++ D+ + L A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
GH++ V ++ + A + + +
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGK 114
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
A G V +L +GAD+++ D+ V+ L A ++GH++ V ++ H A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EA G + R+L+ GADVNA + + T L +AA +GH VE+LL GA V
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+ G +PL LAA GHL +VE+L ++GAD+++QD
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ D G TPL LAA GH ++V++LL H AD+ A S+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDIW 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA + G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ A AG D V IL+ + AD+ A + TPL LA G E+VE+LL GA+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
++ TPL LAA+ G++ I+++LL +GA++N++ K G + ++ NG+ ++L
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAAT GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ A G V++L+ G+D+NA + T L LA +G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEATRAGQDDEVRILMANGADVNAMDDAGV-TPLHLAAKRGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G TPL AA+ G++E+ VLL+ GADVNA TA
Sbjct: 61 EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
V +L++ GA V + G +PL LAA GHL +VE+L KHGAD+++ D + L A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
GH++ V ++ + A + + +
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGK 114
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
A G V +L +GAD+++ D+ V+ L A ++GH++ V ++ H A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 9 SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
++H + L AC GGH V++LL GA + TPL A +G V++LL H A
Sbjct: 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
++ +S+ +P+ A G E V L+ G N +H+ TPL LA +K
Sbjct: 150 SVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207
Query: 129 LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
LL GA++N G SPL LL+D G+D A+
Sbjct: 208 KLLESGADVNQGKGQD---SPLHAVVRTASEELACLLMDFGADTQAK 251
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D S+ H+ A+ GH+ + L+S+G + +PL A GH V
Sbjct: 55 DAVSDWSPMHEAAIH-----GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAAS 120
ILL H A + + TPL AC G ++ V LLL GA+ + SD +P+ AA
Sbjct: 110 ILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAAR 166
Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
G+V + L+ +G I+ + S LG +PL LA N A VK LL+ G+D+N +
Sbjct: 167 RGHVECVNSLIAYGGNIDHKI-SHLG-TPLYLACENQQRACVKKLLESGADVNQG--KGQ 222
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
++ L E+ LL+D A+ + + G P+
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
+PL A GG+++ +K+LL HGA++N T +PL A ++G V LLL G+ +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASV 151
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
Q E++ + + A +G E V+ L+ N++H+ TPL A + L
Sbjct: 152 --QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
L+ GADVN +D+ L LL+ GA + KN +G P+ L
Sbjct: 210 LESGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
SP+ AA++GH +++ L+ G +N I + + L AC G V +LL A V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--AADKGHCRFVE 265
TPL A G + +LL GA V P S D A I AA +GH V
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PES-DLASPIHEAARRGHVECVN 174
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
L++ G ++ K +PL+LA + V+ L + GAD++ Q + S L A R
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVR 231
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ ES+ + + A GH E V L++ G +I+H+ TPL LA V LL
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL 117
AD+ + +D+PL E+ LL+ GA+ + +N P+ L
Sbjct: 212 SGADV--NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA GH + L+S+G V + SPL A GGHLS V++L KHGA ++
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQ 351
+ L A G V ++ H A + ++ I
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIH 162
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L GADVNA T L +AA GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGH--TPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
G +PL LAA HL +VE+L KHGAD+++QD
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L + GAD+ D G TPL LAA GH ++V++LL + AD+ A T
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NT 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL + AD+ A ++ TPL LA G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNA-NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ TPL LAA ++ I+++LL HGA++N++ K G + ++ NG+ ++L
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L G+D+NA + +T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILTANGADVNAN-DYWGHTPLHLAAMLGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V TG TPL AA ++E+ VLL GADVNA TA
Sbjct: 61 EIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV++ H T L LA GH E+VE+LL GAD+ G TPL LAA A H ++V+
Sbjct: 39 DVNANDYWGH-TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVE 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
+LL H AD+ AQ + K T ++ G ++ E+L
Sbjct: 98 VLLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA G V +L + GA V + G++PL LAA GHL +VE+L K+GAD+++ N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
+ L A H++ V ++ H A + + +
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGK 114
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA H VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGL--TPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+ G +PL L A GHL +VE+L KHGAD+++QD
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V K GLTPL AA ++E+ VLL GADVNA + +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA--IDA 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
+T L + A GH VE+LL GA V ++K G + ++ + G+ + E+L K
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ TPL L A G++ I+++LL HGA++N++ K G + ++ NG+ ++L
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ DK G TPL LAA H ++V++LL + AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA-IDAI 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+TPL L G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA H E+VE+LL GAD+ D G TPL L A GH ++V++LL H AD+ A
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIDNGNEDLAEIL 132
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ + T L LA
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAEDKVGL-TPLHLAAMNDHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G TPL A G++E+ VLL GADVNA TA
Sbjct: 61 EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK--TAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ D G+ E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA G V +L++ GA V ++K G +PL LAA HL +VE+L K+GAD+++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
+ L GH++ V ++ H A + + +
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK 114
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
+T L L GH E+VE+LL GAD+ +DK G T ++ G++ + +IL
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +A GH VE+LL GA V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+ G +PL LAA GHL + E+L KHGAD+++QD
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ E TPL LA + G E+VE+LL GA+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ +TPL LAA G++ I ++LL HGA++N++ K G + ++ NG+ ++L
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ--DKFGKTAFDISIGNGNEDLAEIL 132
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA A GH E+VE+LL GAD+ D GFTPL LAA GH ++ ++LL H AD+ A
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
Q + K T ++ G ++ E+L
Sbjct: 109 QDKFGK-TAFDISIGNGNEDLAEIL 132
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +D+ G TPL LA GH ++V++LL + AD+ A +
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAI 79
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA G E+ E+LL GA+ ++ T ++ G ++ ++L
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ + GS LG L+ AA G V++L+ G+D+NA+ E T L LA G
Sbjct: 3 GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEYGL-TPLYLATAHGHL 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+V +LL A+V G TPL AA G++E+ VLL GADVNA TA
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ--DKFGKTAFD 118
Query: 254 IAADKGHCRFVELL 267
I+ G+ E+L
Sbjct: 119 ISIGNGNEDLAEIL 132
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
AA G V +L++ GA V K++ G +PL+LA GHL +VE+L K+GAD+++ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
+ L A GH++ ++ H A + + +
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK 114
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 4/205 (1%)
Query: 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
A G YE L+ G + + + T L AA ++++K ++ GA I + G
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGD 74
Query: 145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
L +PL A GH + V L+ G+D + I+ + + LA G +V+ L+ +
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 205 NVEHRAKTGLTPLMEAASGGY-VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
+V+ + G+TPLM AA + V+ R+LL VN ++TAL A G+
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTV 192
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLA 288
+ LLL GA V+ +N KG S L LA
Sbjct: 193 ISLLLEAGANVDAQNIKGESALDLA 217
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 3/189 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
L+ G D+ DK+ T L AA +V ++ A ++ TPL A G
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87
Query: 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
+V L+ GA+ + + + LAA G+ +I+ L+ G +++ + G++P
Sbjct: 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM--DQNGMTP 145
Query: 150 LMLAAMNGHTA-AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
LM AA H+ +LLL +N + ++NTAL A G V+SLLL+ ANV+
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 209 RAKTGLTPL 217
+ G + L
Sbjct: 206 QNIKGESAL 214
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD---ILLNHKAD 69
+ + LA GH +V L+++G D++ D+ G TPL+ AA H VD +LL
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS--VDPTRLLLTFNVS 168
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
+ + K+T L A G V+ LLL GAN + +N+ + L LA
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
Y+ G ++ G D+N+ P L A +GH V L+ GA + + +G S
Sbjct: 61 YISKGAIVDQLGGDLNSTP--------LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLM-AAFRKGHVKAVR 331
+ LAA GH S+V L G D+D D ++ LM AA+R V R
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A GH +V L+ GAD D +G + + LAA GH +V L+ D++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRG-----ANKEHRNVSDYTPLSLAASGGYVNII 127
+ + A + LLLT +K H+N T L A G +I
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN----TALHWAVLAGNTTVI 193
Query: 128 KLLLTHGAEINSR 140
LLL GA ++++
Sbjct: 194 SLLLEAGANVDAQ 206
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
I H D++GFTPL+ AA G VV+ LL + AD + + +++ LSLACS G ++V++
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 85
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL G + + + TPL A G +V +K+LL GA+ T S G + + LA
Sbjct: 86 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 143
Query: 157 GHTAAVKLL 165
G+ + +++
Sbjct: 144 GYRSVQQVI 152
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
QG ++ ++++ + H + G TPLM AA+ G + V LL GAD + R+
Sbjct: 11 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRE 68
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+AL++A KG+ V++LL G V + G +PL A +G H+ V++L + GAD
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PLM AA +G A V+ LL G+D + R +AL+LAC +G ++V +LLD +
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
V G TPL+ A G +V+ ++LL+ GAD
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL A + G+ VVE LL GA+ + + LSLA S GY +I+K+LL G ++N
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
+ G +PL+ A H VK+LL+ G+D + ++ N+ + LA G V
Sbjct: 96 YDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS-MDLAVALGYRSV 148
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+V + T+ T L A A G +VE LL GAD + K + L LA + G+ +V
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL+ D+ + + TPL A G + V++LL GA+ S Y + LA +
Sbjct: 85 MLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 143
Query: 122 GYVNIIKLLLTH 133
GY ++ +++ +H
Sbjct: 144 GYRSVQQVIESH 155
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L AA G VE LL GA ++ K S L LA + G+ +V++L G D++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
D + L+ A HVK V+ ++
Sbjct: 96 YDWNGGTPLLYAVHGNHVKCVKMLL 120
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+++G +PL AA G ++VVE L ++GAD + S L A KG+ V+ +++
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 88
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
I H D++GFTPL+ AA G VV+ LL + AD + + +++ LSLACS G ++V++
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 103
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL G + + + TPL A G +V +K+LL GA+ T S G + + LA
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 161
Query: 157 GHTAAVKLL 165
G+ + +++
Sbjct: 162 GYRSVQQVI 170
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
QG ++ ++++ + H + G TPLM AA+ G + V LL GAD + R+
Sbjct: 29 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRE 86
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+AL++A KG+ V++LL G V + G +PL A +G H+ V++L + GAD
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PLM AA +G A V+ LL G+D + R +AL+LAC +G ++V +LLD +
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDCGVD 110
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
V G TPL+ A G +V+ ++LL+ GAD
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL A + G+ VVE LL GA+ + + LSLA S GY +I+K+LL G ++N
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNT 182
+ G +PL+ A H VK+LL+ G+D + ++ N+
Sbjct: 114 YDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 154
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+V + T+ T L A A G +VE LL GAD + K + L LA + G+ +V
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 102
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL+ D+ + + TPL A G + V++LL GA+ S Y + LA +
Sbjct: 103 MLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 161
Query: 122 GYVNIIKLLLTH 133
GY ++ +++ +H
Sbjct: 162 GYRSVQQVIESH 173
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L AA G VE LL GA ++ K S L LA + G+ +V++L G D++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
D + L+ A HVK V+ ++
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLL 138
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+++G +PL AA G ++VVE L ++GAD + S L A KG+ V+ +++
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 106
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
I H D++GFTPL+ AA G VV+ LL + AD + + +++ LSLACS G ++V++
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 87
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL G + + + TPL A G +V +K+LL GA+ T S G + + LA
Sbjct: 88 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 145
Query: 157 GHTAAVKLL 165
G+ + +++
Sbjct: 146 GYRSVQQVI 154
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
QG ++ ++++ + H + G TPLM AA+ G + V LL GAD + R+
Sbjct: 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRE 70
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
+AL++A KG+ V++LL G V + G +PL A +G H+ V++L + GAD
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PLM AA +G A V+ LL G+D + R +AL+LAC +G ++V +LLD +
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
V G TPL+ A G +V+ ++LL+ GAD
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL A + G+ VVE LL GA+ + + LSLA S GY +I+K+LL G ++N
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
+ G +PL+ A H VK+LL+ G+D + ++ N+ + LA G V
Sbjct: 98 YDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS-MDLAVALGYRSV 150
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+V + T+ T L A A G +VE LL GAD + K + L LA + G+ +V
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL+ D+ + + TPL A G + V++LL GA+ S Y + LA +
Sbjct: 87 MLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145
Query: 122 GYVNIIKLLLTH 133
GY ++ +++ +H
Sbjct: 146 GYRSVQQVIESH 157
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L AA G VE LL GA ++ K S L LA + G+ +V++L G D++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
D + L+ A HVK V+ ++
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLL 122
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+++G +PL AA G ++VVE L ++GAD + S L A KG+ V+ +++
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL+ A++ G +E R LL+ GAD + + R++AL++A+ G+ V LLL +
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
+ + + G +PL A +G H+ VE L GAD+ ++ + + + A G+ K +
Sbjct: 94 DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 333 MVNHVAQF------PSDQE 345
+ NH+ + P+D E
Sbjct: 154 IENHILKLFQSNLVPADPE 172
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA G ++L E L + D++GFTPLI A+ G + V LL AD + +
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-K 67
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+++ LSLA +GG ++V LLL R + + + TPL A G +V ++ LL GA+
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Query: 137 INSRTGSKLGISPLMLAAMNGH 158
+ + S G +P+ LA G+
Sbjct: 128 LTTEADS--GYTPMDLAVALGY 147
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A G E V LL GAD K+ + L LA+T G+ +V +LL D+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+ TPL A G + VE LL RGA+ S YTP+ LA + GY + +++
Sbjct: 98 Y-DWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Query: 133 H 133
H
Sbjct: 157 H 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL+ A+ G V+ LL+ G+D + + R +AL+LA G ++V LLL+R +
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+ G TPL+ A G +V+ LL +GAD+
Sbjct: 95 INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLT 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
++AL+LA GG+ ++V LLL R DI D G TPL+ A H K V+ LL AD+
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLT 129
Query: 72 AQSERTKDTPLSLACSGGRYEVVELL 97
+++ + TP+ LA + G +V +++
Sbjct: 130 TEAD-SGYTPMDLAVALGYRKVQQVI 154
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G L I L A G +K L G ++ + + T L A G E V LL+
Sbjct: 1 GDSLSIHQL---AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
A+ AK + L A++GGY ++ +LL++ D+N + T L A H
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI--YDWNGGTPLLYAVHGNHV 115
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
+ VE LL++GA + + G +P+ LA G+ V +++ H
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
N T L A G H + VE LL+RGAD+ G+TP+ LA G+ KV ++ NH
Sbjct: 101 NGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ E T L A +VE LL GAD+ +DK G PL A + GH +V ++L+
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
H A + ++ K TPL A + G+YE+ +LLL GA+ +N TPL L G
Sbjct: 97 HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G VK L + S IE ++T L A R VV LL A+V +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
K GL PL A S G+ EV +L+ GA VN + + T L AA KG +LLL
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 129
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
GA KN+ GN+PL L +G
Sbjct: 130 HGADPTKKNRDGNTPLDLVKDG 151
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
DIE R TPL AA VV+ LL H AD+ A+ ++ PL ACS G YEV E
Sbjct: 37 DIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAE 92
Query: 96 LLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
LL+ GA ++ +TPL AA+ G I KLLL HGA+ + ++ G +PL L
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK--NRDGNTPLDL 147
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G VE + L + VN + + T L AA VE LL GA V
Sbjct: 12 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+K G PL A + GH V ELL KHGA ++ D K + L A KG + + ++ H
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 337 VA 338
A
Sbjct: 131 GA 132
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG + V L ++ E + TPL A R VVE LL GA+ +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ PL A S G+ + +LL+ HGA +N K +PL AA G KLLL
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--TPLHEAAAKGKYEICKLLLQ 129
Query: 168 MGSDINAQIETNRNTALTL 186
G+D + + NT L L
Sbjct: 130 HGADPTKK-NRDGNTPLDL 147
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G V +K L T +N R +PL AA + V+ LL G+D++A+ +
Sbjct: 15 AAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-D 72
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
L AC G +EV LL+ A V TPL EAA+ G E+ ++LL GA
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 238 DVNAPPVPSSRD--TALTIAAD 257
D P +RD T L + D
Sbjct: 133 D----PTKKNRDGNTPLDLVKD 150
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ E T L A +VE LL GAD+ +DK G PL A + GH +V ++L+
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
H A + ++ K TPL A + G+YE+ +LLL GA+ +N TPL L G
Sbjct: 101 HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G VK L + S IE ++T L A R VV LL A+V +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
K GL PL A S G+ EV +L+ GA VN + + T L AA KG +LLL
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 133
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
GA KN+ GN+PL L +G
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDG 155
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
DIE R TPL AA VV+ LL H AD+ A+ ++ PL ACS G YEV E
Sbjct: 41 DIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAE 96
Query: 96 LLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
LL+ GA ++ +TPL AA+ G I KLLL HGA+ + ++ G +PL L
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK--NRDGNTPLDL 151
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G VE + L + VN + + T L AA VE LL GA V
Sbjct: 16 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+K G PL A + GH V ELL KHGA ++ D K + L A KG + + ++ H
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 337 VA 338
A
Sbjct: 135 GA 136
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG + V L ++ E + TPL A R VVE LL GA+ +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ PL A S G+ + +LL+ HGA +N K +PL AA G KLLL
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--TPLHEAAAKGKYEICKLLLQ 133
Query: 168 MGSDINAQIETNRNTALTL 186
G+D + + NT L L
Sbjct: 134 HGADPTKK-NRDGNTPLDL 151
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G V +K L T +N R +PL AA + V+ LL G+D++A+ +
Sbjct: 19 AAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-D 76
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
L AC G +EV LL+ A V TPL EAA+ G E+ ++LL GA
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 238 DVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNK 279
D P +RD T L + D G +LL A ++ K
Sbjct: 137 D----PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAALLDAAKK 175
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A G E+ +LLL GAD +++ G TPL L D + D+L A ++A
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD-IQDLLRGDAALLDA 172
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ E T L A +VE LL GAD+ +DK G PL A + GH +V ++L+
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
H A + ++ K TPL A + G+YE+ +LLL GA+ +N TPL L G
Sbjct: 99 HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G VK L + S IE ++T L A R VV LL A+V +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
K GL PL A S G+ EV +L+ GA VN + + T L AA KG +LLL
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 131
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
GA KN+ GN+PL L +G
Sbjct: 132 HGADPTKKNRDGNTPLDLVKDG 153
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
DIE R TPL AA VV+ LL H AD+ A+ ++ PL ACS G YEV E
Sbjct: 39 DIEGRQS---TPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAE 94
Query: 96 LLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
LL+ GA ++ +TPL AA+ G I KLLL HGA+ + ++ G +PL L
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK--NRDGNTPLDL 149
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G VE + L + VN + + T L AA VE LL GA V
Sbjct: 14 LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
K+K G PL A + GH V ELL KHGA ++ D K + L A KG + + ++ H
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 337 VA 338
A
Sbjct: 133 GA 134
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG + V L ++ E + TPL A R VVE LL GA+ +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ PL A S G+ + +LL+ HGA +N K +PL AA G KLLL
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--TPLHEAAAKGKYEICKLLLQ 131
Query: 168 MGSDINAQIETNRNTALTL 186
G+D + + NT L L
Sbjct: 132 HGADPTKK-NRDGNTPLDL 149
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G V +K L T +N R +PL AA + V+ LL G+D++A+ +
Sbjct: 17 AAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-D 74
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
L AC G +EV LL+ A V TPL EAA+ G E+ ++LL GA
Sbjct: 75 KGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 238 DVNAPPVPSSRD--TALTIAAD 257
D P +RD T L + D
Sbjct: 135 D----PTKKNRDGNTPLDLVKD 152
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL+ A++ G +E R LL+ GAD + + R++AL++A+ G+ V LLL +
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
+ + + G +PL A G H+ VE L GAD+ ++ + + + A G+ K +
Sbjct: 94 DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 333 MVNHVAQF------PSDQE 345
+ NH+ + P+D E
Sbjct: 154 IENHILKLFQSNLVPADPE 172
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 3/142 (2%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
LA G ++L E L + D++GFTPLI A+ G + V LL AD + +
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-K 67
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+++ LSLA +GG ++V LLL R + + + TPL A G +V ++ LL GA+
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Query: 137 INSRTGSKLGISPLMLAAMNGH 158
+ + S G +P+ LA G+
Sbjct: 128 LTTEADS--GYTPMDLAVALGY 147
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A G E V LL GAD K+ + L LA+T G+ +V +LL D+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+ TPL A G + VE LL RGA+ S YTP+ LA + GY + +++
Sbjct: 98 Y-DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156
Query: 133 H 133
H
Sbjct: 157 H 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL+ A+ G V+ LL+ G+D + + R +AL+LA G ++V LLL+R +
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGGYTDIVGLLLERDVD 94
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
+ G TPL+ A G +V+ LL +GAD LT AD G+
Sbjct: 95 INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-------------LTTEADSGYT 137
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
++AL+LA GG+ ++V LLL R DI D G TPL+ A H K V+ LL AD+
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 72 AQSERTKDTPLSLACSGGRYEVVELL 97
+++ + TP+ LA + G +V +++
Sbjct: 130 TEAD-SGYTPMDLAVALGYRKVQQVI 154
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G L I L A G +K L G ++ + + T L A G E V LL+
Sbjct: 1 GDSLSIHQL---AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
A+ AK + L A++GGY ++ +LL++ D+N + T L A H
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI--YDWNGGTPLLYAVRGNHV 115
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
+ VE LL++GA + + G +P+ LA G+ V +++ H
Sbjct: 116 KCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
N T L A G H + VE LL+RGAD+ G+TP+ LA G+ KV ++ NH
Sbjct: 101 NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
PL A M V+ LL + Q + + L + HE+ S LL + NV
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
++ +G TP A S G +EV + L D+ + + + T L +A K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
L+ GA V +K+K PL AA+ G L ++ELLC G + ++ QD + + L A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
GH A +V
Sbjct: 185 GHGDAAVLLV 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 25 ELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKD 79
E+ LLS+ ++ ++ D G+TP +A + G+ +VV L + K D+ + +
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV- 108
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG-AEIN 138
T L LA +EV + L+ GA+ ++ + PL AAS G + +I+LL G + +N
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ K G +PL A GH A LL++
Sbjct: 169 WQ--DKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 60 VDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN---KEHRNVSDYTPLS 116
V LL+ K + Q ++ PL + S +E+ LL++ N ++ + S +TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
+A S G + ++K L + + + G++ L LA + L++ G+ + +
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 177 ETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
+ N+ L A G +++ LL K+ V + K G TPL A + G+ + +L++K
Sbjct: 138 KFNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 236 -GADVN 240
GA+ +
Sbjct: 197 YGAEYD 202
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
PL A M V+ LL + Q + + L + HE+ S LL + NV
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
++ +G TP A S G +EV + L D+ + + + T L +A K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
L+ GA V +K+K PL AA+ G L ++ELLC G + ++ QD + + L A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
GH A +V
Sbjct: 185 GHGDAAVLLV 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 25 ELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKD 79
E+ LLS+ ++ ++ D G+TP +A + G+ +VV L + K D+ + +
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV- 108
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG-AEIN 138
T L LA +EV + L+ GA+ ++ + PL AAS G + +I+LL G + +N
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ K G +PL A GH A LL++
Sbjct: 169 WQ--DKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 60 VDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN---KEHRNVSDYTPLS 116
V LL+ K + Q ++ PL + S +E+ LL++ N ++ + S +TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
+A S G + ++K L + + + G++ L LA + L++ G+ + +
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 177 ETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
+ N+ L A G +++ LL K+ V + K G TPL A + G+ + +L++K
Sbjct: 138 KFNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 236 -GADVN 240
GA+ +
Sbjct: 197 YGAEYD 202
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
PL A M V+ LL + Q + + L + HE+ S LL + NV
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
++ +G TP A S G +EV + L D+ + + + T L +A K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
L+ GA V +K+K PL AA+ G L ++ELLC G + ++ QD + + L A +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
GH A +V
Sbjct: 185 GHGDAAVLLV 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%)
Query: 25 ELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKD 79
E+ LLS+ ++ ++ D G+TP +A + G+ +VV L + K D+ + +
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV- 108
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG-AEIN 138
T L LA +EV + L+ GA+ ++ + PL AAS G + +I+LL G + +N
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ K G +PL A GH A LL++
Sbjct: 169 WQ--DKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 6/186 (3%)
Query: 60 VDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN---KEHRNVSDYTPLS 116
V LL+ K + Q ++ PL + S +E+ LL++ N ++ + S +TP
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH 77
Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
+A S G + ++K L + + + G++ L LA + L++ G+ + +
Sbjct: 78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD 137
Query: 177 ETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
+ N+ L A G +++ LL K+ V + K G TPL A + G+ + +L++K
Sbjct: 138 KFNQ-IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196
Query: 236 -GADVN 240
GA+ +
Sbjct: 197 YGAEYD 202
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 30/242 (12%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
+ A +G T V LL+ G+DIN + TAL AC ++V L++ AN+
Sbjct: 44 FLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--------------- 254
G PL AAS GY+++ L+ +GA V A V S DT L I
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 255 -------AADKGHCRFV----ELLLSKGAQVEVKN-KKGNSPLWLAANGGHLSVVELLCK 302
AA K R + L+ G +V++ K G + L +AA G+ V++LL +
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKC 362
D++ +D + L AA G +A R +V ++ + ++ + V D+++L
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYL 280
Query: 363 QE 364
+E
Sbjct: 281 EE 282
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
ACS G E V LL RGA+ + NV T L A V+++K L+ +GA IN
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE- 105
Query: 145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
G PL AA G+ + L+ G+ + A + + +T L +A + E++ ++R+
Sbjct: 106 -GWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 205 -NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
++E K ++ A R L+ G +N S TAL +AA KG+
Sbjct: 164 VDIEAARKEEERIMLRDA--------RQWLNSG-HINDVRHAKSGGTALHVAAAKGYTEV 214
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
++LL+ V +K+ G +PL AA+ G +L ++ D+++
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 117/286 (40%), Gaps = 66/286 (23%)
Query: 12 DTALTLA-CAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
D A+ LA C+ G E V LL RGADI + + G T L H+
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL-----------------HQ--- 79
Query: 71 EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
AC ++V+ L+ GAN + + PL AAS GY++I + L
Sbjct: 80 --------------ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD-MGSDIN-AQIETNR-------- 180
++ GA + + G +PL +A ++ ++ G DI A+ E R
Sbjct: 126 ISQGAHVGAVNSE--GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183
Query: 181 ----------------NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224
TAL +A +G EV+ LL+ + +V + G TPL AA G
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243
Query: 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
E R+L++ D+ A V TA + AD+ ++E L K
Sbjct: 244 KEEACRILVENLCDMEA--VNKVGQTAFDV-ADEDILGYLEELQKK 286
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 3 VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
+D T +T L +A G VE LL G+D +D G+TPL A GH KVV++
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPL 115
LL HKA + + D+PL A G ++V+LLL+ GA++ N+ P+
Sbjct: 62 LLQHKALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
+T L IA+ KG VE LL G+ VK+ G +PL A N GHL VVELL +H A ++
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ + S L A + GHV V+ ++++ A
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L +A++ G +V+ LL GSD N + T L AC G +VV LLL KA V
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGW-TPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
+PL +AA G+V++ ++LL GA NA
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
+ +G T L +A+ G V+ LL + +D + + TPL AC+ G +VVELLL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
A + +PL AA G+V+I+KLLL++GA N+
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
T L +A +G V LL ++ + G TPL EA + G+++V +LL A VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
D+ L AA GH V+LLLS GA N G P+
Sbjct: 72 --TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337
N +G + L +A+ G + VE L ++G+D + +D+ + L A GH+K V ++ H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 338 A 338
A
Sbjct: 67 A 67
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 18/230 (7%)
Query: 145 LGISPLMLAAMNG--------------HTAAV-KLLLDMGSDINAQIETNRNTALTLACF 189
+G++PLM+AA+ G TA V LL G+++NA ++ T+L LA
Sbjct: 1 MGLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSR 248
R + LLD A+ + TG TPL A + + V ++LL ++ ++NA +
Sbjct: 61 FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT- 119
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
T L +AA VE L++ A + + G + L AA + V +L H A+ D
Sbjct: 120 -TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKEL 358
+QD++ + L A R+G +A + ++++ A M R + V + L
Sbjct: 179 AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL 228
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 19/211 (9%)
Query: 44 GFTPLILAAT------AGHD---------KVVDILLNHKADMEAQSERTKDTPLSLACSG 88
G TPL++AA G D +V+ LL A++ A ++T +T L LA
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGI 147
R + + LL GA+ ++ + TPL A + + + ++LL + A +N+R G
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHD--GT 119
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+PL+LAA V+ L+ +DINA + + TAL A E V++LL AN +
Sbjct: 120 TPLILAARLAIEGMVEDLITADADINAADNSGK-TALHWAAAVNNTEAVNILLMHHANRD 178
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ TPL AA G E + LLD A+
Sbjct: 179 AQDDKDETPLFLAAREGSYEASKALLDNFAN 209
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 11 HD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
HD T L LA E +VE L++ ADI D G T L AA + + V+ILL H A
Sbjct: 116 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 175
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
+ +AQ ++ +TPL LA G YE + LL AN+E + D P +A+ + +I++
Sbjct: 176 NRDAQDDK-DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVR 234
Query: 129 LLLTH 133
LL H
Sbjct: 235 LLDEH 239
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 17/218 (7%)
Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
+I LL GAE+N+ T K G + L LAA A K LLD G+D N+Q T R T L
Sbjct: 32 VISDLLAQGAELNA-TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR-TPLH 89
Query: 186 LACFQGRHEVVSLLL-DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV 244
A V +LL +R N+ R G TPL+ AA + L+ AD+NA
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA--A 147
Query: 245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
+S TAL AA + V +LL A + ++ K +PL+LAA G + L
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL---- 203
Query: 305 ADIDSQDNRKVSCLM------AAFRKGHVKAVRWMVNH 336
+D+ NR+++ M A + H VR + H
Sbjct: 204 --LDNFANREITDHMDRLPRDVASERLHHDIVRLLDEH 239
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
LL GAD +D G TPL A A V ILL ++A TPL LA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
+VE L+T A+ + S T L AA+ + +LL H A +++ +P
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE--TP 187
Query: 150 LMLAAMNGHTAAVKLLLD 167
L LAA G A K LLD
Sbjct: 188 LFLAAREGSYEASKALLD 205
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 113 TPLSLAASGGYV----NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
TPL +A G + ++ L G E++ + L +PL LA + + V+LL+
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA----NVEHRAKTGLTPLMEAASGG 224
G+ A ++ + TA LAC + LLD A ++E R GLT L A +
Sbjct: 69 GASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
E ++LL++GAD++A + S R + L A + V+LLL GA V + G+S
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
L A+ G L +V L + GAD ++ + LM A + + +R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 32/208 (15%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN---RNTALTLACFQGRHEVVSLL--- 199
G +PL +A + G+ AV L+++ +++ R T L LA VV LL
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 200 ------LDRKANV------EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS 247
LDR EHR+ T L L+++A+ G +++ D
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG------------ 116
Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVE-VKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
TAL +A + V+LLL +GA ++ V K G SPL A LS+V+LL +HGA+
Sbjct: 117 -LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 307 IDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
+++Q S L +A +G + VR +V
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLV 203
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD-------TPLSLACSGGRYEV 93
D+ G TPL +A G+ V L+N + Q R D TPL LA V
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVN----LFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE--INSRTGSKLGISPLM 151
V LL+T GA+ + T LA ++ LL A ++ + G++ L
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 152 LAAMNGHTAAVKLLLDMGSDINA-QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRA 210
+A V+LLL+ G+DI+A I++ R + L A +V LLL ANV +
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQM 180
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
+G + L A+ G + + R L+ GAD + DT L +A + R +++L K
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC--HNDTPLMVARSR---RVIDILRGK 235
Query: 271 GAQ 273
+
Sbjct: 236 ATR 238
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGA----DIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
TA LAC + LL A D+E R+ G T L +A + V +LL A
Sbjct: 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
D++A ++ +PL A +V+LLL GAN + S + L A+ G + +++
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 200
Query: 129 LLLTHGAE 136
L+ GA+
Sbjct: 201 TLVRSGAD 208
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL-----T 132
+ TPL LA + E+ E LL G + E R+ TPL LA G + + +L
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
H I T G + L LA+++G+ V+LL+ +G+D+NAQ N TAL LA
Sbjct: 105 HLHSILKATNYN-GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Query: 193 HEVVSLLLDRKANVEHRAKTGLTP 216
++VSLLL A+V G +P
Sbjct: 164 PDLVSLLLKCGADVNRVTYQGYSP 187
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN-----HK 67
T L LA E+ E LL G D E RD +G TPL LA G V +L H
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN-KEHRNVSDYTPLSLAASGGYVNI 126
+ + T L LA G +VELL++ GA+ + T L LA ++
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166
Query: 127 IKLLLTHGAEINSRTGSKLGISPLMLA 153
+ LLL GA++N T G SP L
Sbjct: 167 VSLLLKCGADVNRVTYQ--GYSPYQLT 191
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+PL LA + + LL G D + + NT L LAC QG V +L +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVL-TQSCTTP 104
Query: 208 HRAKT-------GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
H G T L A+ GY+ + +L+ GADVNA P + TAL +A D +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQN 163
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLA 288
V LLL GA V +G SP L
Sbjct: 164 PDLVSLLLKCGADVNRVTYQGYSPYQLT 191
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK 270
TPL A E+ LL G D P RD T L +A ++G V +L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQS 100
Query: 271 GAQ------VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
++ N G++ L LA+ G+L +VELL GAD+++Q+
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK----- 302
+ T L +A E LL G E+++ +GN+PL LA G L+ V +L +
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 303 HGADIDSQDNRKV-SCLMAAFRKGHVKAVRWMVN 335
H I N +CL A G++ V +V+
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDK-KGFTPLILAATAGHDKVVDILLN 65
T N T L LA G+ +VELL+S GAD+ ++ G T L LA + +V +LL
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 66 HKADM 70
AD+
Sbjct: 173 CGADV 177
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILA 51
DV+++ N TAL LA + +LV LLL GAD+ +G++P L
Sbjct: 142 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL-----T 132
+ TPL LA + E+ E LL G + E R+ TPL LA G + + +L
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
H I T G + L LA+++G+ V+LL+ +G+D+NAQ N TAL LA
Sbjct: 102 HLHSILKATNYN-GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 160
Query: 193 HEVVSLLLDRKANVEHRAKTGLTP 216
++VSLLL A+V G +P
Sbjct: 161 PDLVSLLLKCGADVNRVTYQGYSP 184
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN-----HK 67
T L LA E+ E LL G D E RD +G TPL LA G V +L H
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN-KEHRNVSDYTPLSLAASGGYVNI 126
+ + T L LA G +VELL++ GA+ + T L LA ++
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 163
Query: 127 IKLLLTHGAEINSRTGSKLGISPLML 152
+ LLL GA++N T G SP L
Sbjct: 164 VSLLLKCGADVNRVTYQ--GYSPYQL 187
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+PL LA + + LL G D + + NT L LAC QG V +L +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVL-TQSCTTP 101
Query: 208 HRAKT-------GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
H G T L A+ GY+ + +L+ GADVNA P + TAL +A D +
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQN 160
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWL 287
V LLL GA V +G SP L
Sbjct: 161 PDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK 270
TPL A E+ LL G D P RD T L +A ++G V +L
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 271 GAQ------VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
++ N G++ L LA+ G+L +VELL GAD+++Q+
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 144
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDK-KGFTPLILAATAGHDKVVDILLN 65
T N T L LA G+ +VELL+S GAD+ ++ G T L LA + +V +LL
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 66 HKADM 70
AD+
Sbjct: 170 CGADV 174
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTP 47
DV+++ N TAL LA + +LV LLL GAD+ +G++P
Sbjct: 139 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK----- 302
+ T L +A E LL G E+++ +GN+PL LA G L+ V +L +
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 303 HGADIDSQDNRKV-SCLMAAFRKGHVKAVRWMVN 335
H I N +CL A G++ V +V+
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 135
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ L AC G +VE+L+ RGA I ++ TPL LAA+ GH +V LL +KAD+ A
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGA 102
+E + PL AC G+ +V E L+ GA
Sbjct: 96 VNEHG-NVPLHYACFWGQDQVAEDLVANGA 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+PL AC GR VVE+L+ RGA N D TPL LAAS G+ +I++ LL + A+IN+
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
++ G PL A G + L+ G+
Sbjct: 96 V--NEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
G+ AV+L LD + Q + + + L AC +GR VV +L+ R A + + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L AAS G+ ++ + LL AD+NA V + L A G + E L++ GA V +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 277 KNKKGNSPL 285
NK G P+
Sbjct: 129 CNKYGEMPV 137
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
++PL A G ++++L+ GA IN ++ +PL LAA +GH V+ LL +D
Sbjct: 35 FSPLHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS 222
INA + + N L ACF G+ +V L+ A V K G P+ +A +
Sbjct: 93 INA-VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 188 CFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
C +G V L LD N + G +PL A G V +L+ +GA +N +
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNR 65
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
DT L +AA GH V+ LL A + N+ GN PL A G V E L +GA
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Query: 19 CAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
C G+ V L L D+ D GF+PL A G VV++L+ A + + R
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN-RG 66
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
DTPL LA S G ++V+ LL A+ N PL A G + + L+ +GA +
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 126
Query: 138 NSRTGSKLGISPL 150
+ +K G P+
Sbjct: 127 S--ICNKYGEMPV 137
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
+ L A +G VE+L+ +GA++ V N+ ++PL LAA+ GH +V+ L ++ ADI++
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
DT L LA + GH ++V+ LL ADI ++ G PL A G D+V + L+ + A
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ L AC G +VE+L+ RGA I ++ TPL LAA+ GH +V LL +KAD+ A
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGA 102
+E + PL AC G+ +V E L+ GA
Sbjct: 101 VNEHG-NVPLHYACFWGQDQVAEDLVANGA 129
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
GS + + G+ AV+L LD + Q + + + L AC +GR VV +L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
R A + + TPL AAS G+ ++ + LL AD+NA V + L A G
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQD 118
Query: 262 RFVELLLSKGAQVEVKNKKGNSPL 285
+ E L++ GA V + NK G P+
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPV 142
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+PL AC GR VVE+L+ RGA N D TPL LAAS G+ +I++ LL + A+IN+
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
++ G PL A G + L+ G+
Sbjct: 101 V--NEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 188 CFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
C +G V L LD N + G +PL A G V +L+ +GA +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNR 70
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
DT L +AA GH V+ LL A + N+ GN PL A G V E L +GA
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 19 CAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
C G+ V L L D+ D GF+PL A G VV++L+ A + + R
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN-RG 71
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
DTPL LA S G ++V+ LL A+ N PL A G + + L+ +GA
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
+ L A +G VE+L+ +GA++ V N+ ++PL LAA+ GH +V+ L ++ ADI++
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
DT L LA + GH ++V+ LL ADI ++ G PL A G D+V + L+ + A
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 34 GADIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDT 80
G D+ R GFTPL++A+ +G V+ + A + Q++RT +T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINS 139
L LA R + + LL A+ ++ TPL A S + ++L+ + A ++++
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
R G +PL+LAA ++ L++ +D+NA ++ +AL A + +L
Sbjct: 121 RMHD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVL 177
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
L AN + + TPL AA G E +VLLD A+
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGH-------------TAAVKLLLDMGSDINAQIETNR 180
G ++N R G +PLM+A+ +G A + + G+ ++ Q +
Sbjct: 1 GMDVNVRGPD--GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG 58
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADV 239
TAL LA R + LL+ A+ + G TPL A S V ++L+ ++ D+
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
+A + T L +AA +E L++ A V + G S L AA ++ +
Sbjct: 119 DARMHDGT--TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
L K+GA+ D Q+NR+ + L A R+G + + +++H A M R + +
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 13 TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++L+ +R D++ R G TPLILAA + +++ L+N AD+
Sbjct: 93 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 152
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 153 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211
Query: 132 THGA 135
H A
Sbjct: 212 DHFA 215
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
LL GA+ + ++ + TPL LAA G + +LL+H A+ + ++ P +A
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERM 235
Query: 90 RYEVVELL 97
+++V LL
Sbjct: 236 HHDIVRLL 243
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G+TPL LAA GH ++V++LL AD+ AQ +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 78 KDTPLSLACSGGRYEVVELL 97
K T ++ G ++ E+L
Sbjct: 69 K-TAFDISIDNGNEDLAEIL 87
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
AA G V +L++ GA V K+K G +PL LAA GHL +VE+L K GAD+++QD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADVNA T L +AA +GH VE+LL GA V
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAGADVNA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCK 302
++K G + ++ + G+ + E+L K
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEILQK 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++N++ K G +PL LAA GH V++LL G+D+NAQ +
Sbjct: 9 AARAGQDDEVRILMANGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 66
Query: 178 TNRNTALTLACFQGRHEVVSLL 199
+ TA ++ G ++ +L
Sbjct: 67 FGK-TAFDISIDNGNEDLAEIL 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
A G+ + V +L+ GA+ ++ YTPL LAA G++ I+++LL GA++N++ K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ--DK 66
Query: 145 LGISPLMLAAMNGHTAAVKLL 165
G + ++ NG+ ++L
Sbjct: 67 FGKTAFDISIDNGNEDLAEIL 87
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
A G+ + V +L+ A+V + K G TPL AA G++E+ VLL GADVNA
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 247 SRDTALTIAADKGHCRFVELL 267
TA I+ D G+ E+L
Sbjct: 69 K--TAFDISIDNGNEDLAEIL 87
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G E+VE+LL GA+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 108 NVSDYTPLSLAASGGYVNIIKLL 130
+ T ++ G ++ ++L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + + T L LA GH E+VE+LL GAD+ +DK G T ++ G++ + +
Sbjct: 27 DVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 85
Query: 62 IL 63
IL
Sbjct: 86 IL 87
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L+ AA G V++L+ G+D+NA+ + + T L LA +G E+V +LL A+V +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 210 AKTGLTPLMEAASGGYVEVGRVL 232
K G T + G ++ +L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
L AA G V +L +GAD++++D + L A R+GH++ V ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 23/248 (9%)
Query: 36 DIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDTPL 82
D+ R GFTPL++A+ +G V+ + A + Q++RT +T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINSRT 141
LA R + + LL A+ ++ TPL A S + ++L+ + A ++++R
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G +PL+LAA ++ L++ +D+NA ++ +AL A + +LL
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA--DVNAPPVPSSRDTALTIAADKG 259
AN + + TPL AA G E +VLLD A D+ RD IA ++
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD----IAQERM 234
Query: 260 HCRFVELL 267
H V LL
Sbjct: 235 HHDIVRLL 242
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 146 GISPLMLAAMNG-------------HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
G +PLM+A+ +G A + + G+ ++ Q + TAL LA R
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSRDTA 251
+ LL+ A+ + G TPL A S V ++L+ ++ D++A + T
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TP 127
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
L +AA +E L++ A V + G S L AA ++ +L K+GA+ D Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
NR+ + L A R+G + + +++H A M R + +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 13 TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++L+ +R D++ R G TPLILAA + +++ L+N AD+
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 152 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
H A N + P +A H V+LL
Sbjct: 211 DHFA--NRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 36 DIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDTPL 82
D+ R GFTPL++A+ +G V+ + A + Q++RT T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINSRT 141
LA + R + + LL A+ ++ TPL A S + ++L+ + A ++++R
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G +PL+LAA ++ L++ +D+NA ++ +AL A + +LL
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
AN + + TPL AA G E +VLLD A+
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 146 GISPLMLAAMNG-------------HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
G +PLM+A+ +G A + + G+ ++ Q + TAL LA R
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSRDTA 251
+ LL+ A+ + G TPL A S V ++L+ ++ D++A + T
Sbjct: 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TP 127
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
L +AA +E L++ A V + G S L AA ++ +L K+GA+ D Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
NR+ + L A R+G + + +++H A M R + +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 13 TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++L+ +R D++ R G TPLILAA + +++ L+N AD+
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 152 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 132 THGA 135
H A
Sbjct: 211 DHFA 214
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
LL GA+ + ++ + TPL LAA G + +LL+H A+ + ++ P +A
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDRLPRDIAQERM 234
Query: 90 RYEVVELL 97
+++V LL
Sbjct: 235 HHDIVRLL 242
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
+ L+ AA T VK +L + +++T NT L +A E+ L+DR A++
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
+ +P + A + G E+ +L K A + AL AA+KGH V+L
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 267 LLSKGAQ-VEVKNKKGNSPLWLA-----ANGGHLSVVELLCKHGADIDSQDNRKVSCLMA 320
LL G + ++ +N G + L A N + +V+LL ++GAD +DN + +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Query: 321 AFRKGHVKAVRWMVNH 336
A +KG+ + + + +
Sbjct: 185 ANQKGYTEISKILAQY 200
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EI 137
+TPL++A E+ + L+ RGA+ +N +P A + G I+ +L H ++
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACF-----QG 191
N ++ G + L+ AA GH VKLLL+ G DI+ Q + TAL A Q
Sbjct: 100 NKH--NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY-TALIEAVGLREGNQL 156
Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
++V LL++ A+ + +G T + A GY E+ ++L
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
E ++ +T L +A E+ + L+ RGADI ++ +P + A G +++ +L
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG-ANKEHRNVSDYTPLSLA-----A 119
H + R L A G + V+LLL G + + +N YT L A
Sbjct: 94 HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153
Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ Y +I+KLL+ +GA+ + + S G + + A G+T K+L
Sbjct: 154 NQLYQDIVKLLMENGADQSIKDNS--GRTAMDYANQKGYTEISKIL 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 28 ELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87
E+L ++ D +G TPL +A ++ L++ AD+ Q+ D+P A +
Sbjct: 23 EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGA 81
Query: 88 GGRYEVVELLL---TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE---INSRT 141
GR E++ +L T NK +R + L AA G+++ +KLLL G E +
Sbjct: 82 QGRTEILAYMLKHATPDLNKHNRYGGN--ALIPAAEKGHIDNVKLLLEDGREDIDFQNDF 139
Query: 142 GSKLGISPLMLAAMNG-HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G I + L N + VKLL++ G+D + + + R TA+ A +G E+ +L
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR-TAMDYANQKGYTEISKIL 197
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
V + +T L IA + L+ +GA + ++N +SP A G ++ + KH
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 304 GA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ---FPSDQEMTRYIQTVNDKE 357
D++ + + L+ A KGH+ V+ ++ + F +D T I+ V +E
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 251 ALTIAADKGHCRFV-ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
AL AA++ + V E+L QV+ + +GN+PL +A + + + + L GADI+
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRY 349
Q++ S + A +G + + +M+ H P + RY
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHAT--PDLNKHNRY 105
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
AA G V +L++ GA V K+K G++PL LAA GHL VV+LL + GAD+++QD
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G TPL LAA GH +VV +LL AD+ AQ +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 78 KDTPLSLACSGGRYEVVELL 97
K T ++ G ++ E+L
Sbjct: 73 K-TAFDISIDNGNEDLAEIL 91
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++ ++ K G +PL LAA NGH VKLLL+ G+D+NAQ +
Sbjct: 13 AARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
Query: 178 TNRNTALTLACFQGRHEVVSLL 199
+ TA ++ G ++ +L
Sbjct: 71 FGK-TAFDISIDNGNEDLAEIL 91
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227
MGSD+ + L A G+ + V +L+ A+V + K G TPL AA G++E
Sbjct: 2 MGSDLGKK--------LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 53
Query: 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
V ++LL+ GADVNA TA I+ D G+ E+L
Sbjct: 54 VVKLLLEAGADVNAQDKFGK--TAFDISIDNGNEDLAEIL 91
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADV A S T L +AA GH V+LLL GA V
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGHLEVVKLLLEAGADVNA 67
Query: 277 KNKKGNSPLWLAANGGHLSVVELL 300
++K G + ++ + G+ + E+L
Sbjct: 68 QDKFGKTAFDISIDNGNEDLAEIL 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
A G+ + V +L+ GA+ ++ + TPL LAA G++ ++KLLL GA++N++ K
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ--DK 70
Query: 145 LGISPLMLAAMNGHTAAVKLL 165
G + ++ NG+ ++L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G EVV+LLL GA+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 108 NVSDYTPLSLAASGGYVNIIKLL 130
+ T ++ G ++ ++L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
+ N T L LA GH E+V+LLL GAD+ +DK G T ++ G++ + +IL
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
L AA G V +L +GAD+ ++D + L A R GH++ V+ ++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
AA G V +L++ GA V K+K G++PL LAA GHL VV+LL + GAD+ +QD
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G ++ V +L++ GAD+ +DK G TPL LAA GH +VV +LL AD+ AQ +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 78 KDTPLSLACSGGRYEVVELL 97
K T ++ G ++ E+L
Sbjct: 91 K-TAFDISIDNGNEDLAEIL 109
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
AA G + +++L+ +GA++ ++ K G +PL LAA NGH VKLLL+ G+D+ AQ +
Sbjct: 31 AARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Query: 178 TNRNTALTLACFQGRHEVVSLL 199
+ TA ++ G ++ +L
Sbjct: 89 FGK-TAFDISIDNGNEDLAEIL 109
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L+EAA G + R+L+ GADV A S T L +AA GH V+LLL GA V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGS--TPLHLAARNGHLEVVKLLLEAGADVXA 85
Query: 277 KNKKGNSPLWLAANGGHLSVVELL 300
++K G + ++ + G+ + E+L
Sbjct: 86 QDKFGKTAFDISIDNGNEDLAEIL 109
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227
MGSD+ + L A G+ + V +L+ A+V + K G TPL AA G++E
Sbjct: 20 MGSDLGKK--------LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
V ++LL+ GADV A TA I+ D G+ E+L
Sbjct: 72 VVKLLLEAGADVXAQDKFGK--TAFDISIDNGNEDLAEIL 109
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L+ AA AG D V IL+ + AD+ A+ ++ TPL LA G EVV+LLL GA+ +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 108 NVSDYTPLSLAASGGYVNIIKLL 130
+ T ++ G ++ ++L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
A G+ + V +L+ GA+ ++ + TPL LAA G++ ++KLLL GA++ ++ K
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ--DK 88
Query: 145 LGISPLMLAAMNGHTAAVKLL 165
G + ++ NG+ ++L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
+ N T L LA GH E+V+LLL GAD+ +DK G T ++ G++ + +IL
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
L AA G V +L +GAD+ ++D + L A R GH++ V+ ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 13 TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++LL +R D++ R G TPLILAA + +++ L+N AD+
Sbjct: 57 TPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 117 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
H A N + P +A H V+LL
Sbjct: 176 DHFA--NRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 59 VVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
V+ + A + Q++RT +T L LA R + + LL A+ ++ TPL A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 119 ASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
S + ++LL + A ++++R G +PL+LAA ++ L++ +D+NA ++
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHD--GTTPLILAARLALEGMLEDLINSHADVNA-VD 119
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+AL A + +LL AN + + TPL AA G E +VLLD A
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Query: 238 --DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
D+ RD IA ++ H V LL
Sbjct: 180 NRDITDHMDRLPRD----IAQERMHHDIVRLL 207
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
G+ ++ Q + TAL LA R + LL+ A+ + G TPL A S V
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 229 GRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
++LL ++ D++A + T L +AA +E L++ A V + G S L
Sbjct: 71 FQILLRNRATDLDARMHDGT--TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 128
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMT 347
AA ++ +L K+GA+ D Q+N++ + L A R+G + + +++H A M
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 188
Query: 348 R 348
R
Sbjct: 189 R 189
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 6 ETESNHDTALTLACAG-GHEELV--ELLLSRGADIEH--------RDKKGFTPLILAATA 54
E + N TAL + G +++ +LL+ +GA +++ KG T L AA
Sbjct: 230 ELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 55 GHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
+ +V L+ K + + + TP+ LA GR EVV L+ +GA+ E + +D+T
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Query: 115 LSLAASGGYVNIIKLL 130
LA + + NI+ +
Sbjct: 350 RQLAQANNHHNIVDIF 365
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 64 LNHKADMEAQSERTKDTPLSLAC-SGGRYEVVELLLTRGAN----KEHRNVSDYTPLSLA 118
NH +++ +E ++P+ L + G Y + E + N + +R V + + +
Sbjct: 79 FNH-TNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS 137
Query: 119 ASGG---YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
A V+ K + GA++N+ + +PL LA + V L G+D
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAXDCDEN--TPLXLAVLARRRRLVAYLXKAGADPTIY 195
Query: 176 IETNRNTALTLACFQGRHEVVSLL--LDRKANVEHRAKTGLTPLMEAASG---GYVEVGR 230
++ R+ A + V L K ++E + G T L A V +
Sbjct: 196 NKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAK 255
Query: 231 VLLDKGADVNAPPVPSSRD-------TALTIAADKGHCRFVELLLS-KGAQVEVKNKKGN 282
+L++KGA V+ + +D TAL AA + V+ L+ KG+ + +++ G
Sbjct: 256 LLVEKGAKVDYDGA-ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 283 SPLWLAANGGHLSVVELLCKHGADIDSQD 311
+P+ LAA G + VV L + GA +++ D
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVD 343
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 31 LSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD--MEAQSERTKDTPLSLACSG 88
++ GAD+ D TPL LA A ++V L AD + +SER+ L A +
Sbjct: 153 IAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSA---LHQAAAN 209
Query: 89 GRY--EVVELLLTR-GANKEHRNVSDYTPLSLAASG---GYVNIIKLLLTHGAEIN---- 138
+ V L T+ + E + + T L + A V KLL+ GA+++
Sbjct: 210 RDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269
Query: 139 SRTGSK--LGISPLMLAAMNGHTAAVKLLL-DMGSDINAQIETNRNTALTLACFQGRHEV 195
+R S+ G + L AA + VK L+ + GS+ + Q E + T + LA +GR EV
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK-TPIXLAAQEGRIEV 328
Query: 196 VSLLLDRKANVE 207
V L+ + A+VE
Sbjct: 329 VXYLIQQGASVE 340
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
L +R D++ R G TPLILAA + +++ L+N AD+ A + K + L A +
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVN 59
Query: 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
+ +LL GANK+ +N + TPL LAA G K+LL H A N + P
Sbjct: 60 NVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLP 117
Query: 150 LMLAAMNGHTAAVKLL 165
+A H V+LL
Sbjct: 118 RDIAQERMHHDIVRLL 133
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA E ++E L++ AD+ D G + L AA + +LL + A+ +
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
Q+ + ++TPL LA G YE ++LL AN++ + D P +A + +I++LL
Sbjct: 77 QNNK-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L +AA +E L++ A V + G S L AA ++ +L K+GA+ D
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
Q+N++ + L A R+G + + +++H A M R + +
Sbjct: 77 QNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL+LAA ++ L++ +D+NA ++ +AL A + +LL AN
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA--DVNAPPVPSSRDTALTIAADKGHCRF 263
+ + TPL AA G E +VLLD A D+ RD IA ++ H
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD----IAQERMHHDI 129
Query: 264 VELL 267
V LL
Sbjct: 130 VRLL 133
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 13 TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++L+ +R D++ R G TPLILAA + +++ L+N AD+
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 120 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
H A N + P +A H V+LL
Sbjct: 179 DHFA--NRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLME 219
A + + G+ ++ Q + TAL LA R + LL+ A+ + G TPL
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 220 AASGGYVEVGRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN 278
A S V ++L+ ++ D++A + T L +AA +E L++ A V +
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 279 KKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
G S L AA ++ +L K+GA+ D Q+NR+ + L A R+G + + +++H A
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 339 QFPSDQEMTR 348
M R
Sbjct: 183 NRDITDHMDR 192
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 59 VVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
V+ + A + Q++RT +T L LA R + + LL A+ ++ TPL A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 119 ASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
S + ++L+ + A ++++R G +PL+LAA ++ L++ +D+NA ++
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHD--GTTPLILAARLAVEGMLEDLINSHADVNA-VD 122
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+AL A + +LL AN + + TPL AA G E +VLLD A
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 238 --DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
D+ RD IA ++ H V LL
Sbjct: 183 NRDITDHMDRLPRD----IAQERMHHDIVRLL 210
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G E+ LL RGAN + ++ + + + AA G+++ ++ LL + A++N G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
PL LAA GH V+ L+ + +TA LA GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G+ E+ LL RGA+ + +D+ GF + AA AG + LL ++AD+ + + + P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLP 106
Query: 82 LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
L LA G VVE L+ A N HRN T LA G ++ L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G + ++ LL AD+ D +G PL LAA GH +VV+ L+ H A
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78 KDTPLSLACSGGRYEVVELLLTRGA 102
DT LA GR EVV L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
G E+ LL R AN + + +TG + +AA G+++ + LL+ ADVN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
+++ +GN PL LAA GHL VVE L KH A
Sbjct: 98 -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
N K
Sbjct: 133 RNHK 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G+ LL +GA ++K++ G + + AA G L ++ L ++ AD++ +DN L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL +GA+ ++ S +P+ AA G+++ +K+L+ HGA++N G+ G P+ LA
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQE 117
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
GHTA V L SD++ + + T L LA +G ++V +L
Sbjct: 118 GHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVDIL 158
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
TAL + F G + LL + A+ + +G +P+ +AA G+++ +VL++ GADVN
Sbjct: 43 KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
P + + +A +GH V L ++ + + ++ +G +PL LA G +V++L
Sbjct: 102 VP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Query: 301 CKH 303
H
Sbjct: 159 QGH 161
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL +GA V++ G SP+ AA G L +++L +HGAD++ D + A ++GH
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 327 VKAVRWM 333
V ++
Sbjct: 120 TAVVSFL 126
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
LL +GA +D G +P+ AA G + +L+ H AD+ + T P+ LA G
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEG 118
Query: 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
VV L ++ R+ TPL LA G +++ +L H
Sbjct: 119 HTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
S T HD A T G + +++L+ GAD+ D G P+ LA GH VV L
Sbjct: 73 SGTSPVHDAART-----GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
++D+ + R TPL LA G ++V++L
Sbjct: 128 A-ESDLHRRDARGL-TPLELALQRGAQDLVDIL 158
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
LA GH +V L + +D+ RD +G TPL LA G +VDIL H
Sbjct: 113 LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G E+ LL RGAN + ++ + + + AA G+++ ++ LL A++N G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
PL LAA GH V+ L+ + +TA LA GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G+ E+ LL RGA+ + +D+ GF + AA AG + LL +AD+ + + + P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLP 106
Query: 82 LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
L LA G VVE L+ A N HRN T LA G ++ L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G + ++ LL AD+ D +G PL LAA GH +VV+ L+ H A
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78 KDTPLSLACSGGRYEVVELLLTRGA 102
DT LA GR EVV L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
G E+ LL R AN + + +TG + +AA G+++ + LL+ ADVN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
+++ +GN PL LAA GHL VVE L KH A
Sbjct: 98 -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
N K
Sbjct: 133 RNHK 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G+ LL +GA ++K++ G + + AA G L ++ L + AD++ +DN L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL +GA+ ++ S +P+ AA G+++ +K+L+ HGA++N G+ G P+ LA
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQE 111
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
GHTA V L SD++ + + T L LA +G ++V +L
Sbjct: 112 GHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVDIL 152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
TAL + F G + LL + A+ + +G +P+ +AA G+++ +VL++ GADVN
Sbjct: 37 KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
P + + +A +GH V L ++ + + ++ +G +PL LA G +V++L
Sbjct: 96 VP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 301 CKH 303
H
Sbjct: 153 QGH 155
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL +GA V++ G SP+ AA G L +++L +HGAD++ D + A ++GH
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 327 VKAVRWM 333
V ++
Sbjct: 114 TAVVSFL 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 30 LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
LL +GA +D G +P+ AA G + +L+ H AD+ + T P+ LA G
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAVQEG 112
Query: 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
VV L ++ R+ TPL LA G +++ +L H
Sbjct: 113 HTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
S T HD A T G + +++L+ GAD+ D G P+ LA GH VV L
Sbjct: 67 SGTSPVHDAART-----GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
++D+ + R TPL LA G ++V++L
Sbjct: 122 A-ESDLHRRDARGL-TPLELALQRGAQDLVDIL 152
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
LA GH +V L + +D+ RD +G TPL LA G +VDIL H
Sbjct: 107 LAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G+ E+ LL RGA+ + +D+ GF + AA AG + LL +AD+ + + + P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLP 106
Query: 82 LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
L LA G VVE L+ A N HRN T LA G ++ L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G + ++ LL AD+ D +G PL LAA GH +VV+ L+ H A
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78 KDTPLSLACSGGRYEVVELLLTRGA 102
DT LA GR EVV L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G E+ LL RGAN + ++ + + + AA G ++ ++ LL A++N G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
PL LAA GH V+ L+ + +TA LA GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRD-TALTI---AADKGHCRFVELLLSKGAQVEVKNK 279
G E+ R LL +GA+ P +D T + AA G ++ LL A V +++
Sbjct: 48 GNPEIARRLLLRGAN------PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN 101
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
+GN PL LAA GHL VVE L KH A N K
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G+ LL +GA ++K++ G + + AA G L ++ L + AD++ +DN L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G E+ LL RGAN + ++ + + + AA G+++ ++ LL A++N G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
PL LAA GH V+ L+ + +TA LA GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G+ E+ LL RGA+ + +D+ GF + AA AG + LL +AD+ + + + P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLP 106
Query: 82 LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
L LA G VVE L+ A N HRN T LA G ++ L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G + ++ LL AD+ D +G PL LAA GH +VV+ L+ H A
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78 KDTPLSLACSGGRYEVVELLLTRGA 102
DT LA GR EVV L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
G E+ LL R AN + + +TG + +AA G+++ + LL+ ADVN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
+++ +GN PL LAA GHL VVE L KH A
Sbjct: 98 -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
N K
Sbjct: 133 RNHK 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G+ LL +GA ++K++ G + + AA G L ++ L + AD++ +DN L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%)
Query: 243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
P+ S D A G V+ ++KG V + G PL AA+ G L ++E L
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
GADI++ D ++ L++A +GHV V+ +++ A
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
+V + G PL AA G +E+ LL KGAD+NAP T L A +GH V
Sbjct: 32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCV 89
Query: 265 ELLLSKGAQVEVKNKKG 281
+LLLSKGA VK G
Sbjct: 90 KLLLSKGADKTVKGPDG 106
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 114 PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
PL AA G + I++ LL GA+IN+ K I+PL+ A GH + VKLLL G+D
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
M A NG VK + G D+N +E R L A G+ E++ LL + A++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-LHYAADCGQLEILEFLLLKGADINAP 69
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
K +TPL+ A G+V ++LL KGAD
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
KG DVN + R L AAD G +E LL KGA + +K +PL A GH+
Sbjct: 29 KGEDVNRT-LEGGR-KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
Query: 295 SVVELLCKHGAD-----------IDSQDNRKVSCLM 319
S V+LL GAD ++ DN+ + L+
Sbjct: 87 SCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
PL A G+ E++E LL +GA+ + TPL A G+V+ +KLLL+ GA+
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
G E++E LL +GADI DK TPL+ A GH V +LL+ AD
Sbjct: 51 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
D A G + V+ +++G D+ + G PL AA G ++++ LL AD+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
A ++ TPL A G V+LLL++GA+K
Sbjct: 68 A-PDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
A G ++ +K + G ++N G PL AA G ++ LL G+DINA +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAP-D 70
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLT 215
+ T L A ++G V LLL + A+ + GLT
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL + G +ELL +GA +D G +P+ AA G + +L+ H AD+ A
Sbjct: 46 TALQVMMFGSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 104
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+ T P+ LA G VV L ++ HR+ S TPL LA G N++ +L
Sbjct: 105 L-DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 162
Query: 133 H 133
H
Sbjct: 163 H 163
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL +GA V++ G SP+ AA G L +++L +HGAD+++ D+ + A R+GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 327 VKAVRWM 333
V ++
Sbjct: 122 SSVVSFL 128
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
TAL + F G V LL + A+ + +G +P+ +AA G+++ +VL++ GADVNA
Sbjct: 46 TALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 104
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
+ S+ + +A +GH V L + + + ++ G +PL LA G +++++L
Sbjct: 105 --LDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 161
Query: 302 KH 303
H
Sbjct: 162 GH 163
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL +GA+ ++ S +P+ AA G+++ +K+L+ HGA++N+ + G P+ LA
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDST--GSLPIHLAIRE 119
Query: 157 GHTAAVKLL 165
GH++ V L
Sbjct: 120 GHSSVVSFL 128
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
+S + LA GH +V L +D+ HRD G TPL LA G ++DIL H
Sbjct: 106 DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
S T HD A T G + +++L+ GAD+ D G P+ LA GH VV L
Sbjct: 75 SGTSPVHDAART-----GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
++D+ + + TPL LA G ++++L
Sbjct: 130 P-ESDLH-HRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL + G +ELL +GA +D G +P+ AA G + +L+ H AD+ A
Sbjct: 44 TALQVMMFGSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 102
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+ T P+ LA G VV L ++ HR+ S TPL LA G N++ +L
Sbjct: 103 L-DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 160
Query: 133 H 133
H
Sbjct: 161 H 161
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL +GA V++ G SP+ AA G L +++L +HGAD+++ D+ + A R+GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 327 VKAVRWM 333
V ++
Sbjct: 120 SSVVSFL 126
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
TAL + F G V LL + A+ + +G +P+ +AA G+++ +VL++ GADVNA
Sbjct: 44 TALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 102
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
+ S+ + +A +GH V L + + + ++ G +PL LA G +++++L
Sbjct: 103 --LDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 159
Query: 302 KH 303
H
Sbjct: 160 GH 161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL +GA+ ++ S +P+ AA G+++ +K+L+ HGA++N+ + G P+ LA
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDST--GSLPIHLAIRE 117
Query: 157 GHTAAVKLL 165
GH++ V L
Sbjct: 118 GHSSVVSFL 126
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
+S + LA GH +V L +D+ HRD G TPL LA G ++DIL H
Sbjct: 104 DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
S T HD A T G + +++L+ GAD+ D G P+ LA GH VV L
Sbjct: 73 SGTSPVHDAART-----GFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
++D+ + + TPL LA G ++++L
Sbjct: 128 P-ESDLH-HRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
+V + G PL AA G +E+ LL KGAD+NAP T L A +GH V
Sbjct: 27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCV 84
Query: 265 ELLLSKGAQVEVKNKKGNSPL 285
+LLLSKGA VK G + L
Sbjct: 85 KLLLSKGADKTVKGPDGLTAL 105
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
D A G V+ ++KG V + G PL AA+ G L ++E L GADI+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+ D ++ L++A +GHV V+ +++
Sbjct: 63 APDKHHITPLLSAVYEGHVSCVKLLLS 89
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 114 PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
PL AA G + I++ LL GA+IN+ K I+PL+ A GH + VKLLL G+D
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
M A NG VK + G D+N +E R L A G+ E++ LL + A++
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP-LHYAADCGQLEILEFLLLKGADINAP 64
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
K +TPL+ A G+V ++LL KGAD
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
M A G ++ + + KG DVN + R L AAD G +E LL KGA +
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRT-LEGGR-KPLHYAADCGQLEILEFLLLKGADINA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGAD-----------IDSQDNRKVSCLM 319
+K +PL A GH+S V+LL GAD +++ DN+ + L+
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALL 117
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
PL A G+ E++E LL +GA+ + TPL A G+V+ +KLLL+ GA+
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
G E++E LL +GADI DK TPL+ A GH V +LL+ AD
Sbjct: 46 GQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
D A G + V+ +++G D+ + G PL AA G ++++ LL AD+
Sbjct: 3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPL 115
A ++ TPL A G V+LLL++GA+K + T L
Sbjct: 63 A-PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
A G ++ +K + G ++N G PL AA G ++ LL G+DINA +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEG--GRKPLHYAADCGQLEILEFLLLKGADINAP-D 65
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
+ T L A ++G V LLL + A+ + GLT L
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPL 48
+ +H T L A GH V+LLLS+GAD + G T L
Sbjct: 65 DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
A G + ++ LL AD+ D +G PL LAA GH +VV+ L+ H A
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78 KDTPLSLACSGGRYEVVELLLTRGA 102
DT LA GR EVV L+ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G E+ LL RGAN + ++ + + AA G+++ ++ LL A++N G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
PL LAA GH V+ L+ + +TA LA GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G+ LL +GA ++K++ GN+ + AA G L ++ L + AD++ +DN L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALT-IAADKGHCRFVELLLSKGAQVEVKNKKGN 282
G E+ R LL +GA+ P + A+ AA G ++ LL A V +++ +GN
Sbjct: 48 GNPEIARRLLLRGAN---PDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN 104
Query: 283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
PL LAA GHL VVE L KH A N K
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G+ E+ LL RGA+ + +D+ G + AA AG + LL +AD+ + + + P
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLP 106
Query: 82 LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
L LA G VVE L+ A N HRN T LA G ++ L+ +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAM-----NGHTAAVKLLL 166
T L + S +++ LL G +++ + ++ G SP+ML A+ V L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
+G +INA+ TAL LA GR +VV LL +A+V + G T LM A G+
Sbjct: 171 RLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK 229
Query: 227 EVGRVLLDKGADVNAPPVPS------SRD--TALTIAADKGHCRFVELLLSK 270
E+ +LL VPS RD TAL +A D G +L S+
Sbjct: 230 EIAGLLL---------AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+++++ TAL LA + G ++V+ LL+ AD+ +D G T L+ A GH ++
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
+LL + + ++R T L +A G+ E+ +L +R
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 177 ETNRNTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
++N NTAL + VV LLD V+ + + G +P+M
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM----------------- 150
Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVK-NKKGNSPLWLAANGGHL 294
+ A ++D T+ L L + + K ++ G + L LA + G +
Sbjct: 151 ---LTALATLKTQDDIETV-----------LQLFRLGNINAKASQAGQTALMLAVSHGRV 196
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
VV+ L AD++ QD+ + LM A GH
Sbjct: 197 DVVKALLACEADVNVQDDDGSTALMCACEHGH 228
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV SE E+ TA A + L +LL R D++ D+ G T L+ A G DK V
Sbjct: 39 DVVSEYETPWWTA---ARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVR 93
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
+L AD++ + R T L +A R EVVE L+ GA+ E + T L LA
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
I SRT + G ++ +GH+ + + +D+ ++ ET TA A Q +
Sbjct: 6 IGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQA---LS 61
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256
LL DR +V+ + G T L+ A G + R+L + GAD++ + TAL +AA
Sbjct: 62 QLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-TALHMAA 118
Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
VE L+ GA +EV++++G + L LA
Sbjct: 119 GYVRPEVVEALVELGADIEVEDERGLTALELA 150
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLAANGGHLSV 296
DV+A V + TAL A G + V LL GA ++ ++ +G + L +AA V
Sbjct: 68 DVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 297 VELLCKHGADIDSQDNRKVSCL 318
VE L + GADI+ +D R ++ L
Sbjct: 126 VEALVELGADIEVEDERGLTAL 147
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR---DTALTIAADKGHCR 262
V R G T L AA +E VL++ ++ P+ S TAL IA +
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89
Query: 263 FVELLLSKGAQVEVKNK-------------KGNSPLWLAANGGHLSVVELLCKHGADIDS 309
V LL++GA V + G PL AA G +V LL +HGADI +
Sbjct: 90 LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149
Query: 310 QDN 312
QD+
Sbjct: 150 QDS 152
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 24 EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTK----D 79
+ L +LL G ++ R G T L +AA + + +L+ ++ + ++
Sbjct: 17 QALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ 76
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHR---NVSDYTP----------LSLAASGGYVNI 126
T L +A +V LL RGA+ R +V Y P LS AA G I
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 127 IKLLLTHGAEINSR 140
++LL+ HGA+I ++
Sbjct: 137 VRLLIEHGADIRAQ 150
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDK-------------KGFTPLILAATAGHDK 58
TAL +A + LV LL+RGA + R G PL AA G ++
Sbjct: 76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135
Query: 59 VVDILLNHKADMEAQ 73
+V +L+ H AD+ AQ
Sbjct: 136 IVRLLIEHGADIRAQ 150
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPL 48
L+ A G EE+V LL+ GADI +D G T L
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV SE E+ TA A + L +LL R D++ D+ G T L+ A G DK V
Sbjct: 40 DVVSEYETPWWTA---ARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVR 94
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
+L AD++ + R T L +A R EVVE L+ GA+ E + T L LA
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
I SRT + G ++ +GH+ + + +D+ ++ ET TA A Q +
Sbjct: 7 IGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQA---LS 62
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256
LL DR +V+ + G T L+ A G + R+L + GAD++ + TAL +AA
Sbjct: 63 QLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-TALHMAA 119
Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
VE L+ GA +EV++++G + L LA
Sbjct: 120 GYVRPEVVEALVELGADIEVEDERGLTALELA 151
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLAANGGHLSV 296
DV+A V + TAL A G + V LL GA ++ ++ +G + L +AA V
Sbjct: 69 DVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 297 VELLCKHGADIDSQDNRKVSCL 318
VE L + GADI+ +D R ++ L
Sbjct: 127 VEALVELGADIEVEDERGLTAL 148
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
+E + G TPL +A ++V +L + AD+ TPL LA V+EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
LL GA+ R TPL A + +LL HGA G KL
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKK---GFTPLILAATAGHDKVVDILLNHKA 68
DTAL LA HE ++ LL A E+ D + G T L LAA G V+ L A
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNII 127
+ +ER T L LAC R +L + R+ SD Y S + +
Sbjct: 70 GVLV-AERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 128 KLLLTHGAEINSRTGSKL------------GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
+ + N G +PL +A ++ V+LL D G+D+N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
T T L LA V+ LLL A+ R G TPL A
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 201 DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
D + +E G TPL A E+ R+L D GAD+N P P+ T L +A +
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-EPTCGRTPLHLAVEAQA 204
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
+ELLL GA + G +PL A + + LL HGA K+S
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
+E + G TPL +A ++V +L + AD+ TPL LA V+EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
LL GA+ R TPL A + +LL HGA G KL
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKL 259
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKK---GFTPLILAATAGHDKVVDILLNHKA 68
DTAL LA HE ++ LL A E+ D + G T L LAA G V+ L A
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNII 127
+ +ER T L LAC R +L + R+ SD Y S + +
Sbjct: 70 GVLV-AERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 128 KLLLTHGAEINSRTGSKL------------GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
+ + N G +PL +A ++ V+LL D G+D+N
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
T T L LA V+ LLL A+ R G TPL A
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 201 DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
D + +E G TPL A E+ R+L D GAD+N P P+ T L +A +
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-EPTCGRTPLHLAVEAQA 204
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
+ELLL GA + G +PL A + + LL HGA K+S
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLS 260
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
DK G T L A GH +V+ L Q + DT L A G ++V+LLL +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIK 128
GA + RN+ A + +++K
Sbjct: 163 GARTDLRNIEKKLAFDXATNAACASLLK 190
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+PL AA G+ + ++ LD +N ++ +TAL AC G ++V L + N+E
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEXLF-TQPNIE 132
Query: 208 --HRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ K G T L AA GY ++ ++LL KGA
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
LD + V K G T L A GG+ ++ L + ++ DTAL AA KG
Sbjct: 93 LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKG 151
Query: 260 HCRFVELLLSKGAQVEVKN 278
+ V+LLL+KGA+ +++N
Sbjct: 152 YADIVQLLLAKGARTDLRN 170
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKE--HRNVSDYTPLSLAASGGYVNIIKLLLT 132
++ T L AC GG ++VE L T+ N E +N T L AA GY +I++LLL
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Query: 133 HGAEINSR 140
GA + R
Sbjct: 162 KGARTDLR 169
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE-LLCKHGA 305
S D L AA +G+ ++ L V +K G++ L+ A +GGH +VE L +
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNI 131
Query: 306 DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQE- 364
+++ Q+ + L AA KG+ V+ ++ A+ ++ + K D
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD--------LRNIEKKLAFDXATNA 183
Query: 365 -CSMVIRVAKNQQAERANKNANILLEELDME 394
C+ +++ + A R NA L++ D +
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A+ + D PL A G + L + + T L A GG+ +I++ L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLF 126
Query: 132 TH-GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
T E+N + +KLG + L AA G+ V+LLL G+
Sbjct: 127 TQPNIELNQQ--NKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 114 PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN 173
PL AA G ++ ++ L + +N K G + L A GH V+ L
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEXLF-----TQ 128
Query: 174 AQIETNR-----NTALTLACFQGRHEVVSLLLDRKANVEHR 209
IE N+ +TAL A ++G ++V LLL + A + R
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 47 PLIL---AATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
PL+L AA G +VV + D +Q T L A G Y +V+ L+T GAN
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN 79
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
+ +TPL AAS I L+ HGA I + T
Sbjct: 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
M+ S+ TAL A G + +V+ L++ GA++ D G+TPL AA+ +
Sbjct: 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC 103
Query: 61 DILLNHKADMEAQS 74
L+ H A + A +
Sbjct: 104 MALVQHGAAIFATT 117
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 202 RKANVEHRAKTG----LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD-TALTIAA 256
RKA +A+ L L++AA G +EV + + ++N P P+ TAL A
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK---EMNDPSQPNEEGITALHNAI 62
Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
+ V+ L++ GA V + G +PL AA+ + L +HGA I
Sbjct: 63 CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDIL--LNHKADMEAQSERTKDTPLSLACSGGRYEVV 94
I H + F PL L + + D++ + ++ D + T L A G E+V
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86
Query: 95 ELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
+ L+ G N + +TPL AAS V + K L+ GA + + T S +
Sbjct: 87 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 2 DVDSETESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKV 59
+VD + N + TAL A GH E+V+ L+ G ++ D G+TPL AA+ + +V
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 60 VDILLNHKADMEAQS 74
L+ A + A +
Sbjct: 119 CKFLVESGAAVFAMT 133
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
TAL A G E+V L+ NV G TPL AAS V+V + L++ GA V A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 242 PPVPSSRDTALTIAADK------GHCRFVELLLSKGAQVEVKNKKGNSPLW 286
+ + AADK G+ + + L ++ + NK LW
Sbjct: 132 -----MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 206 VEHRAKTGLTPLM----EAASGGYVEVGRVLLDKGADVNAPPVPSSRD-TALTIAADKGH 260
+ H + PL + G + V R++ + V+ P +P+ TAL A GH
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGH 82
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
V+ L+ G V + G +PL AA+ ++ V + L + GA +
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G +LV+ ++ D + +G T L A AGH ++V L+ ++ A ++ TP
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTP 106
Query: 82 LSLACSGGRYEVVELLLTRGA 102
L A S +V + L+ GA
Sbjct: 107 LHCAASCNNVQVCKFLVESGA 127
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+++ N L + +G ++V ++ + G+T L A G+ E+ + L+
Sbjct: 32 RVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274
G +VNA S T L AA + + + L+ GA V
Sbjct: 92 FGVNVNA--ADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 16/168 (9%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
PL AA T VK+LL G D ++Q + NTAL A G + V L + + +
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXF 123
Query: 209 RAKTGL-TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT-----IAADKGHCR 262
KTG T A V + L +PS+ D A+ I GH
Sbjct: 124 YGKTGWKTSFYHAVXLNDVSIVSYFL--------SEIPSTFDLAILLSCIHITIKNGHVD 175
Query: 263 FVELLLSKGAQVEVKNKKGNSP-LWLAANGGHLSVVELLCKHGADIDS 309
LLL N P + LA + + ++ L K+ +I S
Sbjct: 176 XXILLLDYXTSTNTNNSLLFIPDIKLAIDNKDIEXLQALFKYDINIYS 223
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+A A A + LV LL+ GA +++ + F PL AAT K+V ILL D ++
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGA-LKNLLENEF-PLHQAATLEDTKIVKILLFSGLD-DS 89
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAASGGYVNIIKLLL 131
Q + +T L A G + V+L + + + + T A V+I+ L
Sbjct: 90 QFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFL 149
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
+EI S + +S + + NGH LLLD + N
Sbjct: 150 ---SEIPSTFDLAILLSCIHITIKNGHVDXXILLLDYXTSTNT 189
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A E LL GA++ D G PL A GH + + L AD+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
+ +D PL++A ++V LL
Sbjct: 297 RDSEGRD-PLTIAMETANADIVTLL 320
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
L HGA++N G + +PL+ A A + LL G+++N Q ++ L A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATIL 278
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPL---MEAASGGYVEVGRV 231
G + L L R A++ R G PL ME A+ V + R+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274
TPL++A + + LL GA+VN S+ L A GH L L +GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 275 EVKNKKGNSPLWLAANGGHLSVVELL 300
++ +G PL +A + +V LL
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
L GADVN T L A E LL GA V + G PL A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 293 HLSVVELLCKHGADIDSQDN 312
H + L K GAD+ ++D+
Sbjct: 280 HTGLACLFLKRGADLGARDS 299
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 49 ILAATAGHDKVVDIL---LNHKADME-AQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
+L +GH + + L H AD+ + TPL A + E LL GAN
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 105 EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164
+ + PL A G+ + L L GA++ +R G PL +A + V L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTL 319
Query: 165 L 165
L
Sbjct: 320 L 320
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L AA+ G VE R LL+ GA+ NAP R + + G R ELLL GA+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM---MGSARVAELLLLHGAEPNC 72
Query: 277 KNKKG-NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
+ P+ AA G L + +L + GA +D +D + A GH R++
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A +GR E V LL+ AN G P+ + G V +LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
P++ + AA +G + +L GA+++V++ G P+ LA GH V L
Sbjct: 75 -PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 82 LSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
L+ A + GR E V LL GAN N P+ + G + +LLL HGAE N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPN 71
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A E LL GA++ D G PL A GH + + L AD+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
+ +D PL++A ++V LL
Sbjct: 297 RDSEGRD-PLTIAMETANADIVTLL 320
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
L HGA++N G + +PL+ A A + LL G+++N Q ++ L A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATIL 278
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPL---MEAASGGYVEVGRV 231
G + L L R A++ R G PL ME A+ V + R+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274
TPL++A + + LL GA+VN S+ L A GH L L +GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 275 EVKNKKGNSPLWLAANGGHLSVVELL 300
++ +G PL +A + +V LL
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
L GADVN T L A E LL GA V + G PL A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 293 HLSVVELLCKHGADIDSQDN 312
H + L K GAD+ ++D+
Sbjct: 280 HTGLACLFLKRGADLGARDS 299
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 49 ILAATAGHDKVVDIL---LNHKADME-AQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
+L +GH + + L H AD+ + TPL A + E LL GAN
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 105 EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164
+ + PL A G+ + L L GA++ +R G PL +A + V L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTL 319
Query: 165 L 165
L
Sbjct: 320 L 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A A E LL GA++ D G PL A GH + + L AD+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296
Query: 73 QSERTKDTPLSLACSGGRYEVVELL 97
+ +D PL++A ++V LL
Sbjct: 297 RDSEGRD-PLTIAMETANADIVTLL 320
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
L HGA++N G + +PL+ A A + LL G+++N Q ++ L A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATIL 278
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPL---MEAASGGYVEVGRV 231
G + L L R A++ R G PL ME A+ V + R+
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274
TPL++A + + LL GA+VN S+ L A GH L L +GA +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 275 EVKNKKGNSPLWLAANGGHLSVVELL 300
++ +G PL +A + +V LL
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLL 320
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 49 ILAATAGHDKVVDIL---LNHKADME-AQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
+L +GH + + L H AD+ + TPL A + E LL GAN
Sbjct: 202 LLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV 261
Query: 105 EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164
+ + PL A G+ + L L GA++ +R G PL +A + V L
Sbjct: 262 NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE--GRDPLTIAMETANADIVTL 319
Query: 165 L 165
L
Sbjct: 320 L 320
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 33/80 (41%)
Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
L GADVN T L A E LL GA V + G PL A G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 293 HLSVVELLCKHGADIDSQDN 312
H + L K GAD+ ++D+
Sbjct: 280 HTGLACLFLKRGADLGARDS 299
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 2 DVDSETESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKV 59
+VD + N + TAL A GH E+V+ L+ G ++ D G+TPL AA+ + +V
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 60 VDILLNHKADMEAQS 74
L+ A + A +
Sbjct: 119 CKFLVESGAAVFAMT 133
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 37 IEHRDKKGFTPLILA-----ATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
I H + F PL LA + G +V ++ ++ D + T L A G
Sbjct: 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHT 83
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
E+V+ L+ G N + +TPL AAS V + K L+ GA + + T S +
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
TAL A G E+V L+ NV G TPL AAS V+V + L++ GA V A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 242 PPVPSSRDTALTIAADK------GHCRFVELLLSKGAQVEVKNKKGNSPLW 286
+ + AADK G+ + + L ++ + NK LW
Sbjct: 132 -----MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 238 DVNAPPVPSSRD-TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296
+V+ P +P+ TAL A GH V+ L+ G V + G +PL AA+ ++ V
Sbjct: 59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 297 VELLCKHGADI 307
+ L + GA +
Sbjct: 119 CKFLVESGAAV 129
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
G +LV+ ++ D + +G T L A AGH ++V L+ ++ A ++ TP
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTP 106
Query: 82 LSLACSGGRYEVVELLLTRGA 102
L A S +V + L+ GA
Sbjct: 107 LHCAASCNNVQVCKFLVESGA 127
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR 248
+G ++V ++ + G+T L A G+ E+ + L+ G +VNA S
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--ADSDG 103
Query: 249 DTALTIAADKGHCRFVELLLSKGAQV 274
T L AA + + + L+ GA V
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 35.8 bits (81), Expect = 0.069, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLT---PLMEAASG---GYVEVGRVLLDKGADVNA 241
+ R+++ L+++ A+++ R K G T PL + G E+ ++ L+KGAD+ A
Sbjct: 52 EARYKISXFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKK--------------GNSPLWLAANGGHLS 295
TAL IA ++ +VELL+ KGA V + + G PL LAA
Sbjct: 95 TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154
Query: 296 VVELLCKHG---ADIDSQDNRKVSCLMA 320
+V L ++G AD+ QD+R + L A
Sbjct: 155 IVHYLTENGHKQADLRRQDSRGNTVLHA 182
>pdb|2XUM|S Chain S, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 20
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 293 HLSVVELLCKHGADIDSQDN 312
HL VV+LL +HGAD+D+QD
Sbjct: 1 HLEVVKLLLEHGADVDAQDK 20
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
S+ DT L IAA G+ V+ LL GA + NK G P+ A
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAA 52
+SN DT L +A G+ +V+ LL GAD +K G P+ A
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
++ GN+PL + +L +V+ L KHG++ DN SCL+ A +
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+ D L+ A + G+ E V LL GA+ N P+ + G + +LLL HGAE
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69
Query: 137 IN 138
N
Sbjct: 70 PN 71
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+ L A +G+ E V LL+ A+ + G P+ + G +V +LL GA+ N
Sbjct: 13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPN 71
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
P++ + AA +G + +L GA+++V + G P+ LA GH + L
Sbjct: 72 CAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 13 TALTLACAGGHEELVELLLSRGADI---------EHRDKKGFT-----PLILAATAGHDK 58
TAL +A + VELL+++GAD+ + +D+ G+ PL LAA
Sbjct: 93 TALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 152
Query: 59 VVDILLNH---KADMEAQSER 76
+V+ L + KADM Q R
Sbjct: 153 IVNYLTENPHKKADMRRQDSR 173
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L A +GR E V LL+ A G P+ + G V +LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
P++ + AA +G + +L GA+++V++ G P+ LA GH V L
Sbjct: 75 -PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 82 LSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
L+ A + GR E V LL GA N P+ + G + +LLL HGAE N
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPN 71
>pdb|4B7K|B Chain B, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 20
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 293 HLSVVELLCKHGADIDSQDN 312
HL VV+LL +HGAD+ +QD
Sbjct: 1 HLEVVKLLLEHGADVSAQDK 20
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 43/189 (22%)
Query: 156 NGHTAAVKLLLDMGSD-------INAQIETNR---NTALTLACFQGRHEVVSLLLDRKAN 205
NG + LLLD+ +NA + TAL +A + +V+LL++ A+
Sbjct: 67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGAD 126
Query: 206 VEHRA------KT--------GLTPLMEAASGGYVEVGRVLLD---KGADVNA-PPVPSS 247
V+ A KT G PL AA + + + LL + AD++A V ++
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186
Query: 248 RDTALTIAADK--GHCRFV-----ELLLSKGAQV-------EVKNKKGNSPLWLAANGGH 293
AL AD + +FV E+L+ GA++ E+ N+KG +PL LAA+ G
Sbjct: 187 VLHALVEVADNTVDNTKFVTSXYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGK 245
Query: 294 LSVVELLCK 302
+ V+ + +
Sbjct: 246 IGVLAYILQ 254
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
TA T AG + +V L+++ G+D + +K + TA D V+D+LL
Sbjct: 467 TAGTAPTAGNYSGVVSLVMTLGSDNKQVEKN------ITVTASVDPVIDLLL 512
>pdb|4AKF|A Chain A, Crystal Structure Of Vipd From Legionella Pneumophila
Length = 577
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
A G+++ ++LL S +H PL+ GHDK+ D L++ K++ E
Sbjct: 396 AVKNGYDQTMQLLDSHKQTFDH-------PLMAILYIGHDKLKDALIDEKSEKE 442
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
TAL C + E ++LLL A IE ++ G TPL +A H+ ++L
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1SM1|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
Length = 275
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 19 CAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTK 78
GGH+ L ++ D + RDK G + A ++ I L H AD E
Sbjct: 54 IGGGHKRLYRII-----DFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEK------ 102
Query: 79 DTPLSLACSGGRYEVVELLLTRGAN-----KEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
RY + LT GA + + + PL G V+ ++L+
Sbjct: 103 -----------RYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHALELVPGK 151
Query: 134 GAEINSRTGSKLGI 147
GA++ G+ + +
Sbjct: 152 GAQLARSAGTSVQV 165
>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1XBP|A Chain A, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|A Chain A, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|A Chain A, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|A Chain A, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|A Chain A, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|A Chain A, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|A Chain A, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 274
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 19 CAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTK 78
GGH+ L ++ D + RDK G + A ++ I L H AD E
Sbjct: 53 IGGGHKRLYRII-----DFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEK------ 101
Query: 79 DTPLSLACSGGRYEVVELLLTRGAN-----KEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
RY + LT GA + + + PL G V+ ++L+
Sbjct: 102 -----------RYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHALELVPGK 150
Query: 134 GAEINSRTGSKLGI 147
GA++ G+ + +
Sbjct: 151 GAQLARSAGTSVQV 164
>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|A Chain A, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|D Chain D, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 270
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 27/134 (20%)
Query: 19 CAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTK 78
GGH+ L ++ D + RDK G + A ++ I L H AD E
Sbjct: 51 IGGGHKRLYRII-----DFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEK------ 99
Query: 79 DTPLSLACSGGRYEVVELLLTRGAN-----KEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
RY + LT GA + + + PL G V+ ++L+
Sbjct: 100 -----------RYILAPEGLTVGATVNAGPEAEPKLGNALPLRFVPVGAVVHALELVPGK 148
Query: 134 GAEINSRTGSKLGI 147
GA++ G+ + +
Sbjct: 149 GAQLARSAGTSVQV 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,328,713
Number of Sequences: 62578
Number of extensions: 487850
Number of successful extensions: 3005
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 783
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)