Query psy904
Match_columns 596
No_of_seqs 532 out of 2772
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 17:25:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 6.5E-54 2.2E-58 456.7 40.6 329 7-341 10-371 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1E-53 3.6E-58 455.1 39.6 304 32-341 2-305 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.8E-45 6.1E-50 377.8 34.5 300 10-343 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-45 6.4E-50 377.6 34.5 276 43-346 24-305 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 3.1E-44 1.1E-48 369.6 32.9 311 8-340 21-335 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 4.6E-43 1.6E-47 349.8 32.7 273 10-311 4-283 (285)
7 1wdy_A 2-5A-dependent ribonucl 100.0 2.6E-42 8.8E-47 344.3 33.3 273 43-343 4-282 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 8.4E-43 2.9E-47 362.9 20.2 313 11-339 37-371 (373)
9 3utm_A Tankyrase-1; tankyrase, 100.0 7.1E-41 2.4E-45 344.5 31.2 295 7-326 54-351 (351)
10 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-41 8.2E-46 351.9 19.2 282 13-307 68-372 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 3E-40 1E-44 330.6 25.6 225 75-308 56-281 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 4.4E-40 1.5E-44 329.4 25.2 258 77-343 14-283 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 1.4E-39 4.9E-44 321.4 22.8 249 78-335 3-259 (261)
14 3ljn_A Hypothetical protein; a 100.0 2.4E-40 8.3E-45 343.3 17.8 254 79-338 21-313 (364)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 6.3E-39 2.1E-43 315.2 23.2 216 121-340 33-249 (253)
16 3ljn_A Hypothetical protein; a 100.0 3.1E-40 1.1E-44 342.5 12.3 277 6-311 15-319 (364)
17 1oy3_D Transcription factor in 100.0 1.9E-38 6.4E-43 316.3 22.4 261 7-325 5-269 (282)
18 2xai_A ASB-9, ankyrin repeat a 100.0 6E-38 2E-42 309.7 25.0 258 10-302 2-259 (261)
19 3b7b_A Euchromatic histone-lys 100.0 3.6E-37 1.2E-41 299.2 27.5 228 103-335 3-231 (237)
20 1yyh_A HN1;, notch 1, ankyrin 100.0 9.5E-38 3.3E-42 306.8 23.0 244 36-305 2-247 (253)
21 1k1a_A B-cell lymphoma 3-encod 100.0 9.8E-38 3.4E-42 303.7 22.1 231 75-338 6-240 (241)
22 3aji_A 26S proteasome non-ATPa 100.0 4.7E-37 1.6E-41 297.1 24.1 225 111-339 6-230 (231)
23 1k1a_A B-cell lymphoma 3-encod 100.0 4.6E-37 1.6E-41 299.0 23.2 234 37-305 2-240 (241)
24 1oy3_D Transcription factor in 100.0 6E-37 2E-41 305.4 22.8 229 6-292 40-269 (282)
25 3b7b_A Euchromatic histone-lys 100.0 3.5E-36 1.2E-40 292.2 27.3 230 35-302 2-231 (237)
26 3eu9_A Huntingtin-interacting 100.0 2.4E-36 8.3E-41 293.2 26.0 230 107-340 5-236 (240)
27 3aji_A 26S proteasome non-ATPa 100.0 1.9E-36 6.6E-41 292.8 23.4 226 44-307 6-231 (231)
28 3kea_A K1L; tropism, ANK repea 100.0 5E-37 1.7E-41 307.1 17.3 238 89-343 11-250 (285)
29 4b93_B Ankyrin repeat domain-c 100.0 2.9E-37 1E-41 305.8 14.6 232 77-338 10-243 (269)
30 3eu9_A Huntingtin-interacting 100.0 1E-35 3.5E-40 288.8 25.3 231 7-239 5-236 (240)
31 1s70_B 130 kDa myosin-binding 100.0 1.7E-36 5.7E-41 305.2 18.4 274 17-336 4-286 (299)
32 2dzn_A Probable 26S proteasome 100.0 1.1E-35 3.8E-40 286.7 23.2 219 112-336 3-227 (228)
33 4b93_B Ankyrin repeat domain-c 100.0 1.2E-36 4E-41 301.4 16.3 232 39-308 6-246 (269)
34 2f8y_A Notch homolog 1, transl 100.0 1.3E-35 4.5E-40 285.3 22.8 217 122-342 2-219 (223)
35 3kea_A K1L; tropism, ANK repea 100.0 2.5E-36 8.7E-41 302.0 18.3 241 22-313 11-253 (285)
36 2dzn_A Probable 26S proteasome 100.0 3.3E-35 1.1E-39 283.4 24.1 219 79-303 3-227 (228)
37 1s70_B 130 kDa myosin-binding 100.0 1.4E-35 4.7E-40 298.5 20.3 250 7-303 36-286 (299)
38 2f8y_A Notch homolog 1, transl 100.0 5.5E-35 1.9E-39 281.0 22.8 216 55-308 2-218 (223)
39 1sw6_A Regulatory protein SWI6 100.0 2.5E-36 8.7E-41 308.2 5.7 274 17-325 25-327 (327)
40 1sw6_A Regulatory protein SWI6 100.0 1E-35 3.5E-40 303.7 5.1 256 54-343 29-312 (327)
41 2rfa_A Transient receptor pote 100.0 5.1E-33 1.7E-37 269.0 23.0 196 146-342 3-225 (232)
42 3hra_A Ankyrin repeat family p 100.0 6.8E-32 2.3E-36 254.9 24.4 190 145-337 4-201 (201)
43 1ikn_D Protein (I-kappa-B-alph 100.0 7.8E-34 2.7E-38 275.6 11.1 217 75-323 5-228 (236)
44 4gpm_A Engineered protein OR26 100.0 5.8E-32 2E-36 247.8 20.9 158 182-341 6-163 (169)
45 2rfa_A Transient receptor pote 100.0 1.1E-31 3.8E-36 259.5 21.3 208 10-240 2-224 (232)
46 2etb_A Transient receptor pote 100.0 2.2E-32 7.5E-37 268.9 15.8 194 146-339 2-246 (256)
47 1ikn_D Protein (I-kappa-B-alph 100.0 8.4E-33 2.9E-37 268.4 10.4 213 7-289 4-227 (236)
48 3hra_A Ankyrin repeat family p 100.0 1.3E-30 4.3E-35 246.2 23.6 188 112-304 6-201 (201)
49 4gpm_A Engineered protein OR26 100.0 7E-31 2.4E-35 240.6 20.5 159 148-309 6-164 (169)
50 2pnn_A Transient receptor pote 100.0 7.6E-32 2.6E-36 267.7 13.6 133 210-342 98-261 (273)
51 2pnn_A Transient receptor pote 100.0 1.8E-31 6.2E-36 265.0 14.1 216 101-318 3-271 (273)
52 3jxi_A Vanilloid receptor-rela 100.0 2.6E-31 8.9E-36 261.7 14.1 139 205-343 85-254 (260)
53 2etb_A Transient receptor pote 100.0 2.5E-31 8.7E-36 261.2 12.6 209 77-308 1-248 (256)
54 2aja_A Ankyrin repeat family p 100.0 7.1E-33 2.4E-37 286.0 -6.0 277 13-336 67-371 (376)
55 3jxi_A Vanilloid receptor-rela 100.0 6.3E-30 2.1E-34 251.8 13.5 207 76-309 3-253 (260)
56 4hbd_A KN motif and ankyrin re 100.0 7.8E-30 2.7E-34 253.6 13.2 189 147-338 77-274 (276)
57 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.2E-28 4.2E-33 226.1 19.9 159 177-337 11-169 (169)
58 3v31_A Ankyrin repeat family A 100.0 1.2E-28 4.3E-33 225.4 18.8 159 179-339 2-160 (167)
59 2rfm_A Putative ankyrin repeat 100.0 7.4E-29 2.5E-33 232.5 17.3 159 177-337 32-190 (192)
60 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-28 4.1E-33 224.2 17.7 157 180-339 5-162 (162)
61 3v30_A DNA-binding protein rfx 100.0 1.8E-28 6.2E-33 225.5 16.7 156 182-339 4-160 (172)
62 3v30_A DNA-binding protein rfx 100.0 2.7E-28 9.3E-33 224.3 17.0 170 146-317 2-171 (172)
63 2aja_A Ankyrin repeat family p 100.0 3.2E-31 1.1E-35 273.7 -4.3 252 9-302 90-370 (376)
64 1awc_B Protein (GA binding pro 100.0 9.6E-28 3.3E-32 216.2 18.4 150 181-333 3-152 (153)
65 4hbd_A KN motif and ankyrin re 100.0 2.8E-28 9.4E-33 242.4 13.4 190 112-304 77-273 (276)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.8E-27 6.2E-32 216.3 16.9 157 146-306 5-162 (162)
67 3twr_A Tankyrase-2; ankyrin re 100.0 9.7E-28 3.3E-32 219.0 15.1 158 178-338 6-164 (165)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.8E-27 2E-31 214.8 20.2 156 146-304 14-169 (169)
69 2rfm_A Putative ankyrin repeat 99.9 2.1E-27 7.1E-32 222.6 16.9 158 144-304 33-190 (192)
70 3f6q_A Integrin-linked protein 99.9 1.8E-27 6.2E-32 220.4 16.3 159 181-341 6-165 (179)
71 3v31_A Ankyrin repeat family A 99.9 2.2E-27 7.6E-32 217.0 16.1 159 146-307 3-161 (167)
72 3f6q_A Integrin-linked protein 99.9 5E-27 1.7E-31 217.4 17.7 166 146-314 5-171 (179)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.9E-27 2.7E-31 210.8 18.0 152 181-336 3-155 (156)
74 2vge_A RELA-associated inhibit 99.9 5.3E-30 1.8E-34 247.3 -4.8 209 128-341 2-216 (229)
75 1awc_B Protein (GA binding pro 99.9 2.8E-26 9.5E-31 206.6 19.0 150 147-300 3-152 (153)
76 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-26 4.4E-31 211.5 15.3 158 145-305 7-164 (165)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.8E-27 9.4E-32 230.0 6.7 186 146-337 5-202 (239)
78 2vge_A RELA-associated inhibit 99.9 4.4E-29 1.5E-33 240.9 -7.2 180 80-299 23-206 (229)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-25 7.2E-30 201.3 17.0 153 146-303 2-155 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.5E-26 5.3E-31 224.7 9.8 162 178-342 3-167 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 8E-26 2.7E-30 199.3 12.9 134 203-339 2-136 (136)
82 3t8k_A Uncharacterized protein 99.9 3.8E-25 1.3E-29 205.8 11.3 153 181-337 7-177 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 5.1E-25 1.7E-29 199.1 10.7 142 177-321 9-151 (156)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.2E-24 2.5E-28 183.4 15.8 126 212-339 1-126 (126)
85 1d9s_A Cyclin-dependent kinase 99.9 2.1E-24 7.1E-29 190.2 11.6 133 170-306 3-136 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 6.9E-24 2.3E-28 186.9 14.9 126 210-337 11-136 (136)
87 3t8k_A Uncharacterized protein 99.9 1.1E-24 3.7E-29 202.7 8.5 162 146-311 6-184 (186)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 4.6E-24 1.6E-28 192.8 11.5 134 207-343 6-140 (156)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.5E-23 1.5E-27 178.4 16.0 126 179-306 1-126 (126)
90 3c5r_A BARD-1, BRCA1-associate 99.9 4E-24 1.4E-28 188.6 8.6 133 203-338 1-133 (137)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 5.1E-23 1.7E-27 181.3 14.1 126 177-304 11-136 (136)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.4E-22 4.6E-27 178.7 8.9 130 4-134 3-132 (137)
93 3aaa_C Myotrophin, protein V-1 99.9 3.6E-22 1.2E-26 172.5 10.8 112 210-323 4-115 (123)
94 3ui2_A Signal recognition part 99.9 2.4E-22 8.2E-27 195.7 10.7 144 8-171 42-185 (244)
95 3deo_A Signal recognition part 99.9 2.6E-22 8.8E-27 186.4 10.4 141 8-168 41-181 (183)
96 3deo_A Signal recognition part 99.9 4.6E-22 1.6E-26 184.7 11.9 140 178-336 42-181 (183)
97 3ui2_A Signal recognition part 99.9 5.8E-22 2E-26 192.9 12.2 143 178-339 43-185 (244)
98 1dcq_A PYK2-associated protein 99.9 2.3E-21 7.8E-26 192.3 16.7 128 214-341 131-265 (278)
99 2b0o_E UPLC1; arfgap, structur 99.9 7.4E-22 2.5E-26 198.1 10.8 139 181-327 152-299 (301)
100 3ehr_A Osteoclast-stimulating 99.9 5.5E-22 1.9E-26 190.1 8.1 130 210-341 70-200 (222)
101 3ehr_A Osteoclast-stimulating 99.9 1.3E-21 4.4E-26 187.5 10.3 136 177-314 70-206 (222)
102 2b0o_E UPLC1; arfgap, structur 99.8 1.4E-20 4.7E-25 188.9 16.6 141 146-294 151-299 (301)
103 3aaa_C Myotrophin, protein V-1 99.8 4.9E-21 1.7E-25 165.3 11.2 118 177-296 4-121 (123)
104 1dcq_A PYK2-associated protein 99.8 4.9E-20 1.7E-24 182.7 18.7 125 181-307 131-264 (278)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.6E-20 5.5E-25 153.4 12.4 93 247-339 1-93 (93)
106 3jue_A Arfgap with coiled-coil 99.8 4.1E-20 1.4E-24 189.9 14.8 130 210-339 196-326 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.8 5.6E-20 1.9E-24 197.9 15.1 130 182-313 134-272 (497)
108 3lvq_E ARF-GAP with SH3 domain 99.8 8.4E-20 2.9E-24 196.6 15.7 129 214-342 133-268 (497)
109 3jue_A Arfgap with coiled-coil 99.8 7.6E-20 2.6E-24 187.8 13.9 144 179-324 198-347 (368)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-19 6E-24 147.2 12.5 93 212-306 1-93 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.4E-19 4.7E-24 154.1 9.6 109 208-318 4-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-18 4E-23 148.3 8.5 109 6-115 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 2.2E-17 7.5E-22 139.3 10.3 90 244-333 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.5E-16 8.5E-21 132.7 10.3 92 207-300 18-109 (110)
115 4g26_A Pentatricopeptide repea 69.1 8.7 0.0003 40.3 7.3 141 14-166 32-198 (501)
116 4g26_A Pentatricopeptide repea 67.7 14 0.00047 38.7 8.5 148 47-207 32-209 (501)
117 1ans_A Neurotoxin III; NMR {An 58.4 2.9 0.0001 23.2 0.6 11 573-584 4-14 (27)
118 3p8c_D Wiskott-aldrich syndrom 47.9 11 0.00039 35.6 3.2 26 531-556 184-209 (279)
119 3mkq_B Coatomer subunit alpha; 45.7 67 0.0023 28.1 7.7 54 12-69 9-62 (177)
120 3mkq_B Coatomer subunit alpha; 41.0 1E+02 0.0035 27.0 8.1 133 148-306 10-144 (177)
121 1ijd_A Light-harvesting protei 35.9 6.8 0.00023 26.5 -0.2 13 569-581 37-49 (53)
122 1f5n_A Interferon-induced guan 34.1 3.5E+02 0.012 28.6 12.5 12 42-53 48-59 (592)
123 1nkz_A Light-harvesting protei 30.6 7.9 0.00027 26.2 -0.6 12 570-581 38-49 (53)
124 3k49_A MRNA-binding protein PU 30.3 11 0.00038 37.6 0.1 20 311-330 310-329 (369)
125 3gvo_A Pumilio 2, pumilio homo 29.9 25 0.00086 34.7 2.7 25 245-269 293-317 (351)
126 3k49_A MRNA-binding protein PU 24.0 19 0.00065 35.9 0.5 27 39-65 73-99 (369)
127 1v9d_A Diaphanous protein homo 23.9 72 0.0025 31.2 4.7 8 282-289 177-184 (340)
128 1q1s_A Large T antigen; import 22.7 22 0.00075 20.0 0.3 12 539-550 4-15 (26)
129 3gvo_A Pumilio 2, pumilio homo 22.6 19 0.00066 35.5 0.2 53 40-92 69-123 (351)
130 3zrh_A Ubiquitin thioesterase 22.5 1.5E+02 0.0053 29.5 6.5 48 18-65 29-90 (454)
131 2dbh_A Tumor necrosis factor r 21.2 11 0.00036 27.5 -1.5 25 569-593 29-56 (102)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.5e-54 Score=456.65 Aligned_cols=329 Identities=33% Similarity=0.414 Sum_probs=212.4
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC 86 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 86 (596)
.+..|.||||+||..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 88 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAA 88 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHH
Confidence 4566778888888888888888888888777777777778888888888888888888777776553 456777777777
Q ss_pred HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904 87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166 (596)
Q Consensus 87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll 166 (596)
..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+++.... .|.||||+|+..|+.+++++|+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC--CCCCHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777776665544332 2555666666666655555555
Q ss_pred hcCCCcccccccCCC---------------------------------cHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904 167 DMGSDINAQIETNRN---------------------------------TALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213 (596)
Q Consensus 167 ~~~~~~~~~~~~~~~---------------------------------t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g 213 (596)
+.|++++.. +..|. ||||+|+..++.+++++|++.|++++..+..|
T Consensus 167 ~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 167 ERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245 (437)
T ss_dssp HTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred hCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 555554443 33444 45555555555555555555555555555555
Q ss_pred ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc
Q psy904 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293 (596)
Q Consensus 214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~ 293 (596)
.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence 5555555555555555555555555544 34455666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904 294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341 (596)
Q Consensus 294 ~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 341 (596)
.++|++|+++|++++.++..|.||||+|+..|+.++|++|+++|+++.
T Consensus 324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence 666666666666666666666666666666666666666666666544
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1e-53 Score=455.07 Aligned_cols=304 Identities=31% Similarity=0.407 Sum_probs=243.0
Q ss_pred HCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCC
Q psy904 32 SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD 111 (596)
Q Consensus 32 ~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g 111 (596)
+.|++++..+..|.||||+|+..|+.++|++|+++|++++.. +..+.||||+|+..|+.++|++|++.|++++..+..|
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 80 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence 358899999999999999999999999999999999988764 5678999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q psy904 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191 (596)
Q Consensus 112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 191 (596)
.||||+|+..|+.+++++|+++|++++..... |.||||+|+..|+.+++++|++.+.+.+.. +..|.||||+|+..|
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTA--GHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYG 157 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHcC
Confidence 99999999999999999999999998876644 999999999999999999999999987765 667889999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy904 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271 (596)
Q Consensus 192 ~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g 271 (596)
+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC--CCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988887766 3455667777777776666666666666
Q ss_pred CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341 (596)
Q Consensus 272 ~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 341 (596)
++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++.
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence 6666666666666666666666666666666666666666666666666666666666666666655443
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.8e-45 Score=377.78 Aligned_cols=300 Identities=30% Similarity=0.427 Sum_probs=251.1
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDK-KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG 88 (596)
Q Consensus 10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~-~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 88 (596)
.|+|+||.||..|++++|++||+.|+++|..+. .|+||||+|+..|+.++|++|+++|++++.. +..+.++++.++..
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhh-ccCCCchhHHHHhc
Confidence 467899999999999999999999999988765 4899999999999999999999999888764 56788999999999
Q ss_pred CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168 (596)
Q Consensus 89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~ 168 (596)
+...++..++..+++++..+..|.||||+|+..|+.+++++|+.+|++++.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~----------------------- 159 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE----------------------- 159 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------------
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc-----------------------
Confidence 999999999999999999999999999999999999999999998888765543210
Q ss_pred CCCcccccccCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccCCCChHHHHHHhcCc----HHHHHHHHhCCCCCCCCC
Q psy904 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLD-RKANVEHRAKTGLTPLMEAASGGY----VEVGRVLLDKGADVNAPP 243 (596)
Q Consensus 169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~ 243 (596)
+. ...+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+|+.++..+. ..++++|+++|++++.
T Consensus 160 --~~-~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~-- 234 (337)
T 4g8k_A 160 --DQ-ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-- 234 (337)
T ss_dssp -------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--
T ss_pred --cc-ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--
Confidence 00 1124567788888888888888888885 588888888889999888765443 4578899999999887
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904 244 VPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF 322 (596)
Q Consensus 244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~ 322 (596)
.+..|.||||+|+..|+.+++++|+.. |++++.+|..|.||||+|+..|+.++|++|+++|++++.. +||++|+
T Consensus 235 ~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~ 309 (337)
T 4g8k_A 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTAR 309 (337)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHH
T ss_pred cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence 557889999999999999999999985 7999999999999999999999999999999999988754 5999999
Q ss_pred HcCCHHHHHHHHhCcCCCCCc
Q psy904 323 RKGHVKAVRWMVNHVAQFPSD 343 (596)
Q Consensus 323 ~~g~~~iv~~Ll~~~~~~~~~ 343 (596)
.+|+.++|++|+++||++...
T Consensus 310 ~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 310 RNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HTTCHHHHHHHHHTTCCC---
T ss_pred HcCCHHHHHHHHHCcCCCCCC
Confidence 999999999999999987643
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-45 Score=377.61 Aligned_cols=276 Identities=34% Similarity=0.428 Sum_probs=236.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122 (596)
Q Consensus 43 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g 122 (596)
.|.|+||.|+..|++++|++||++|++++...+..|.||||+|+..|+.++|++||++|++++..+..+.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 46788999999999999999999998888776667889999999999999999999999999888888899999999999
Q ss_pred CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202 (596)
Q Consensus 123 ~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~ 202 (596)
...++..++..+.+++.... .|.|||++|+..|+.+++++|+..|++++.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~--~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~------------------------ 157 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDF--YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT------------------------ 157 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC------------------------
T ss_pred cchhhHHhhhccchhhhhcc--CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc------------------------
Confidence 99988888888888776654 4888888888888888888888888877654211
Q ss_pred CCCcccccCCCChHHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCC
Q psy904 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLD-KGADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGAQVEVK 277 (596)
Q Consensus 203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~di~~~ 277 (596)
..+....+..|.||||+|+..|+.++|++|++ .|++++. .+..|.|+||.++..+. ..++++|+++|++++.+
T Consensus 158 ~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~--~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~ 235 (337)
T 4g8k_A 158 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235 (337)
T ss_dssp C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC
T ss_pred ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc--cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc
Confidence 12234456789999999999999999999995 6999887 66889999998876543 46889999999999999
Q ss_pred CCCCChHHHHHHhcCcHHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCchHH
Q psy904 278 NKKGNSPLWLAANGGHLSVVELLCKH-GADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEM 346 (596)
Q Consensus 278 d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 346 (596)
|..|.||||+|+..|+.+++++|+.. |++++.+|..|.||||+|+..|+.++|++|+++|+++...+.+
T Consensus 236 d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L 305 (337)
T 4g8k_A 236 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 305 (337)
T ss_dssp CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHH
Confidence 99999999999999999999999985 8999999999999999999999999999999999998876544
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.1e-44 Score=369.63 Aligned_cols=311 Identities=28% Similarity=0.330 Sum_probs=283.6
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904 8 ESNHDTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC 86 (596)
Q Consensus 8 d~~g~t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 86 (596)
+..+.|+||.||..|++++|++|+.. +++++..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~ 99 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHHHHHH
Confidence 34577999999999999999999986 8999999999999999999999999999999999998765 568999999999
Q ss_pred HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904 87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166 (596)
Q Consensus 87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll 166 (596)
..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..... |.+|+++++..+..+.+.+.+
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH--GKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC--CCcchHHHhhhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999998876644 899999999888888877765
Q ss_pred hcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCC
Q psy904 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPP 243 (596)
Q Consensus 167 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~ 243 (596)
. ..++..++..++...+..++..+......+..|.||||+|+.. +..+++++|++.|++++.
T Consensus 178 ~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~-- 242 (351)
T 3utm_A 178 K-------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-- 242 (351)
T ss_dssp H-------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC--
T ss_pred c-------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC--
Confidence 3 2578889999999999999988777667788999999999999 668999999999999987
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323 (596)
Q Consensus 244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~ 323 (596)
.+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..|..|.||+++|
T Consensus 243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a-- 320 (351)
T 3utm_A 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-- 320 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS--
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh--
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHhCcCCC
Q psy904 324 KGHVKAVRWMVNHVAQF 340 (596)
Q Consensus 324 ~g~~~iv~~Ll~~~~~~ 340 (596)
+..++++|.+.+...
T Consensus 321 --~~~~~~~l~~~~~~~ 335 (351)
T 3utm_A 321 --NEAVQQILSESTPMR 335 (351)
T ss_dssp --CHHHHHHHHHC----
T ss_pred --hHHHHHHHHhccccc
Confidence 778999999887643
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-43 Score=349.77 Aligned_cols=273 Identities=31% Similarity=0.456 Sum_probs=186.6
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHCCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904 10 NHDTALTLACAGGHEELVELLLSRGADIEHR-DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG 88 (596)
Q Consensus 10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~-d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 88 (596)
+|.|+||.|+..|++++|++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHc
Confidence 4677888888888888888888888887776 667778888888888888888888877776553 45677777777777
Q ss_pred CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168 (596)
Q Consensus 89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~ 168 (596)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++...... ..
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----~~------------------ 140 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----ED------------------ 140 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----HH------------------
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH----HH------------------
Confidence 77777777777777777777777777777777777777777777776665443210 00
Q ss_pred CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCc----HHHHHHHHhCCCCCCCCC
Q psy904 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGY----VEVGRVLLDKGADVNAPP 243 (596)
Q Consensus 169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~ 243 (596)
....+..|.||||.|+..++.+++++|++. |++++..+..|.||||+|+..++ .+++++|++.|++++.
T Consensus 141 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~-- 214 (285)
T 1wdy_A 141 ----QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-- 214 (285)
T ss_dssp ----HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC--
T ss_pred ----HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC--
Confidence 000133455666666666666666666665 66666666666666666666666 6666666666666655
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCC
Q psy904 244 VPSSRDTALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311 (596)
Q Consensus 244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~ 311 (596)
.+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 215 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 34556666666666666666666666 566666666666666666666666666666666666666554
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-42 Score=344.32 Aligned_cols=273 Identities=34% Similarity=0.432 Sum_probs=229.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122 (596)
Q Consensus 43 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g 122 (596)
.|.||||+|+..|++++|++|++.|++++...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 46688888888888888888888888877766667788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202 (596)
Q Consensus 123 ~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~ 202 (596)
+.+++++|+++|++++.... .|.||||+|+..|+.+++++|++.|++++...... .
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~---~------------------- 139 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDF--YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK---E------------------- 139 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---H-------------------
T ss_pred CHHHHHHHHHcCCCCCccCc--ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH---H-------------------
Confidence 88888888888777665543 37777777777777777777777777665431110 0
Q ss_pred CCCcccccCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCC
Q psy904 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGAQVEVK 277 (596)
Q Consensus 203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~di~~~ 277 (596)
.....+..|.||||+|+..|+.+++++|++. |++++. .+..|.||||+|+..++ .+++++|+++|++++.+
T Consensus 140 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~ 215 (285)
T 1wdy_A 140 --DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215 (285)
T ss_dssp --HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred --HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc--cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence 0112367799999999999999999999997 998887 56789999999999999 99999999999999999
Q ss_pred CCCCChHHHHHHhcCcHHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904 278 NKKGNSPLWLAANGGHLSVVELLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD 343 (596)
Q Consensus 278 d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 343 (596)
|..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++|+++...
T Consensus 216 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999 89999999999999999999999999999999999987654
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8.4e-43 Score=362.92 Aligned_cols=313 Identities=20% Similarity=0.232 Sum_probs=233.3
Q ss_pred CCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904 11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR 90 (596)
Q Consensus 11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~ 90 (596)
-..+|..|+..|+...+..++++...+... .+++.-+...|+++++.+++.... +..|.||||+|+..++
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~------~~~g~t~L~~Aa~~~~ 106 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNP----QGYGNGNDFLGDFNHTNLQIPTEP------EPESPIKLHTEAAGSY 106 (373)
T ss_dssp -------------------------------------------------------------------CCCHHHHHHHSSS
T ss_pred cccccccccCCccccchhhhhhhhccccCc----cccCCCCCccccccccccccccCC------CCCCccHHHHHhcCCc
Confidence 345677788999999999999876665422 245677888899999998876543 4568899999999665
Q ss_pred HHHHHHHHhCCCCccCCC-CCCCcHHHHHHhcCCHHHHHHHH--------hCCCCccccCCCCCCCcHHHHHHHcCCHHH
Q psy904 91 YEVVELLLTRGANKEHRN-VSDYTPLSLAASGGYVNIIKLLL--------THGAEINSRTGSKLGISPLMLAAMNGHTAA 161 (596)
Q Consensus 91 ~eivk~LL~~g~~~~~~d-~~g~t~L~~A~~~g~~eiv~~Ll--------~~g~~~~~~~~~~~g~t~L~~A~~~g~~ei 161 (596)
+++++|+. .+++..+ ..|.||||+|+..|+.+++++|+ ..|++++..+. .|.||||+|+..|+.++
T Consensus 107 -~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~--~g~TpL~~A~~~g~~~i 181 (373)
T 2fo1_E 107 -AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRRRL 181 (373)
T ss_dssp -CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT--TSCCHHHHHHHHTCHHH
T ss_pred -hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCHHHHHHHcChHHH
Confidence 78888865 4667777 78999999999999998777776 78999887764 49999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC---CCcccccCCCChHHHHHHhcC---cHHHHHHHHhC
Q psy904 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK---ANVEHRAKTGLTPLMEAASGG---YVEVGRVLLDK 235 (596)
Q Consensus 162 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~ 235 (596)
|++|+++|++++.. +..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..+ +.+++++|++.
T Consensus 182 v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~ 260 (373)
T 2fo1_E 182 VAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260 (373)
T ss_dssp HHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred HHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence 99999999999876 678899999999999999999999988 799999999999999999988 89999999999
Q ss_pred CCCCCCC------CCCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904 236 GADVNAP------PVPSSRDTALTIAADKGHCRFVELLLSKG-AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308 (596)
Q Consensus 236 g~~~~~~------~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~ 308 (596)
|++++.. ..+..|.||||+|+..|+.++|++|+++| ++++..|..|.||||+|+..|+.++|++|+++|++++
T Consensus 261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340 (373)
T ss_dssp TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 9998852 23568999999999999999999999875 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 309 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
.+|..|.|||++|+.+|+.++|++|++++++
T Consensus 341 ~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999999999999999999875
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.1e-41 Score=344.51 Aligned_cols=295 Identities=31% Similarity=0.357 Sum_probs=254.9
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC 86 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 86 (596)
.+..|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~ 132 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAA 132 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999998764 567999999999
Q ss_pred HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904 87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166 (596)
Q Consensus 87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll 166 (596)
..|+.+++++|+++|++++..+..|.+|+++|+..+..+.+.+.+.. .++..++..++...+..++
T Consensus 133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG--------------HSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc--------------cHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999988888887642 5788899999999999998
Q ss_pred hcCCCcccccccCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCC
Q psy904 167 DMGSDINAQIETNRNTALTLACFQ---GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243 (596)
Q Consensus 167 ~~~~~~~~~~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~ 243 (596)
..+..... .+..+.||||+|+.. +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 199 ~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~-- 275 (351)
T 3utm_A 199 ALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-- 275 (351)
T ss_dssp TTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred Hhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--
Confidence 87654333 467788999999999 668999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323 (596)
Q Consensus 244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~ 323 (596)
.+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+| +..++++|.+.+.. ....+.+++..|++
T Consensus 276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~ 348 (351)
T 3utm_A 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASK 348 (351)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--------------------
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhc
Confidence 568899999999999999999999999999999999999999998 67899999987643 23457788888888
Q ss_pred cCC
Q psy904 324 KGH 326 (596)
Q Consensus 324 ~g~ 326 (596)
.|.
T Consensus 349 ~gd 351 (351)
T 3utm_A 349 AGD 351 (351)
T ss_dssp ---
T ss_pred cCC
Confidence 763
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-41 Score=351.95 Aligned_cols=282 Identities=20% Similarity=0.224 Sum_probs=229.4
Q ss_pred cHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHH
Q psy904 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE 92 (596)
Q Consensus 13 t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~e 92 (596)
+++..+...|+++++.+++.. ..+..|.||||+|+..|. +++++|+.. +++...+..|.||||+|+..|+.+
T Consensus 68 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~ 139 (373)
T 2fo1_E 68 GYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAE 139 (373)
T ss_dssp -------------------------------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCS
T ss_pred ccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHH
Confidence 456778888999999998754 456789999999999665 788888654 444444468999999999999998
Q ss_pred HHHHHH--------hCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHH
Q psy904 93 VVELLL--------TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164 (596)
Q Consensus 93 ivk~LL--------~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~ 164 (596)
+|++|+ +.|++++..|..|.||||+|+..|+.++|++|+++|++++.... .|.||||+|+..|+.+++++
T Consensus 140 ~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~--~g~t~L~~A~~~g~~~~v~~ 217 (373)
T 2fo1_E 140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK--SERSALHQAAANRDFGMMVY 217 (373)
T ss_dssp CCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC--CCCCHHHHHHHCCCHHHHHH
Confidence 887776 89999999999999999999999999999999999999887654 49999999999999999999
Q ss_pred HHhcC---CCcccccccCCCcHHHHHHHcC---CHHHHHHHHhcCCCccc--------ccCCCChHHHHHHhcCcHHHHH
Q psy904 165 LLDMG---SDINAQIETNRNTALTLACFQG---RHEVVSLLLDRKANVEH--------RAKTGLTPLMEAASGGYVEVGR 230 (596)
Q Consensus 165 Ll~~~---~~~~~~~~~~~~t~L~~A~~~~---~~~ii~~Ll~~g~~~~~--------~~~~g~t~L~~A~~~g~~~iv~ 230 (596)
|+..+ .+++.. +..|.||||+|+..+ +.+++++|++.|++++. .+..|.||||+|+..|+.++++
T Consensus 218 Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~ 296 (373)
T 2fo1_E 218 MLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296 (373)
T ss_dssp HTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred HHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHH
Confidence 99987 566665 678899999999998 89999999999999886 5678999999999999999999
Q ss_pred HHHhCC-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904 231 VLLDKG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307 (596)
Q Consensus 231 ~Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 307 (596)
+|++.+ ++++. .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++.
T Consensus 297 ~Ll~~~~~~~n~--~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 297 YLVGEKGSNKDK--QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHSCCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred HHHHhcCCCccC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999875 88887 6688999999999999999999999999999999999999999999999999999999998763
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-40 Score=330.60 Aligned_cols=225 Identities=26% Similarity=0.377 Sum_probs=141.0
Q ss_pred cCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHH
Q psy904 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA 154 (596)
Q Consensus 75 ~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 154 (596)
+..|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.... .|.||||+|+
T Consensus 56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~g~t~L~~A~ 133 (285)
T 3d9h_A 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNAC 133 (285)
T ss_dssp SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT--TCCCHHHHHH
T ss_pred CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC--CCCCHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555444332 2555666666
Q ss_pred HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904 155 MNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234 (596)
Q Consensus 155 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 234 (596)
..|+.+++++|++.|++++.. ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus 134 ~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 134 VSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHTCHHHHHHHHHTTCCSSCS--CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 666666666666655554432 235667777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC-CCCcc
Q psy904 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH-GADID 308 (596)
Q Consensus 235 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~ 308 (596)
.|++++. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ++.+++++|+++ |+++.
T Consensus 212 ~ga~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 212 SGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TTCCTTC---CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 7777662 456677777777777777777777777777777777777777777 345677777765 55543
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=329.42 Aligned_cols=258 Identities=26% Similarity=0.332 Sum_probs=210.0
Q ss_pred CCChHHHHHHHCCcHHHHHHHHhCC-----------CCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCC
Q psy904 77 TKDTPLSLACSGGRYEVVELLLTRG-----------ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL 145 (596)
Q Consensus 77 ~~~t~L~~A~~~g~~eivk~LL~~g-----------~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~ 145 (596)
.|.|+||+|+..|+...+..++..+ ..++..+..|.||||+|+..|+.+++++|++.|++++....+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~-- 91 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD-- 91 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT--
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--
Confidence 4556666666666654444433321 124567889999999999999999999999999998876644
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+ .|.||||+|+..|+
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~ 169 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH 169 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence 999999999999999999999999998876 6788999999999999999999999999988644 59999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 305 (596)
.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|+
T Consensus 170 ~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 246 (285)
T 3d9h_A 170 VECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA 246 (285)
T ss_dssp HHHHHHHHHTTCCTTC--CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999887 567899999999999999999999999999995 8899999999999999999999999999
Q ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHhC-cCCCCCc
Q psy904 306 DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH-VAQFPSD 343 (596)
Q Consensus 306 d~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~ 343 (596)
+++.+|..|.|||++|+ ++.+++++|+++ |++++.+
T Consensus 247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~~ 283 (285)
T 3d9h_A 247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPKP 283 (285)
T ss_dssp CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-------
T ss_pred CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCCC
Confidence 99999999999999998 567999999998 7766543
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=321.36 Aligned_cols=249 Identities=24% Similarity=0.316 Sum_probs=198.1
Q ss_pred CChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG 157 (596)
Q Consensus 78 ~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g 157 (596)
|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.... .|.||||+|+..|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~ 80 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNACVSG 80 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcC
Confidence 55666666666666666666666666666666677777777777777777777776666655443 3667777777777
Q ss_pred CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904 158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237 (596)
Q Consensus 158 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 237 (596)
+.+++++|++.|++++. ...|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 81 ~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp CHHHHHHHHHTTCCSSC--SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 77777777777776654 3457788888888888888899998899999899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC--------ccc
Q psy904 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD--------IDS 309 (596)
Q Consensus 238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--------~~~ 309 (596)
+++. +..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..+ +++++|+.++.+ ++.
T Consensus 159 ~~~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~ 233 (261)
T 2xai_A 159 DVNQ---GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRI 233 (261)
T ss_dssp CTTC---CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHH
T ss_pred CCCC---CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHH
Confidence 9884 568899999999999999999999999999999999999999999655 489999998764 457
Q ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904 310 QDNRKVSCLMAAFRKGHVKAVRWMVN 335 (596)
Q Consensus 310 ~~~~g~t~L~~A~~~g~~~iv~~Ll~ 335 (596)
++..|.||++.|.....+..++-++.
T Consensus 234 r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 234 RKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp HTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred HHHhchhccccCcccCCcHHHHHHHh
Confidence 88999999999988877776665553
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-40 Score=343.26 Aligned_cols=254 Identities=20% Similarity=0.190 Sum_probs=185.9
Q ss_pred ChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158 (596)
Q Consensus 79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~ 158 (596)
.||||+|+..|++++|++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++.. .|.||||+|+..|+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCC
Confidence 34444444444444444444444444444444444444444444444444444444432221 14445555555555
Q ss_pred HHHHHHHHhc----CCCccc----------------ccccCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCChH
Q psy904 159 TAAVKLLLDM----GSDINA----------------QIETNRNTALTLACFQG--RHEVVSLLLDRKANVEHRAKTGLTP 216 (596)
Q Consensus 159 ~eiv~~Ll~~----~~~~~~----------------~~~~~~~t~L~~A~~~~--~~~ii~~Ll~~g~~~~~~~~~g~t~ 216 (596)
.+++++|++. |.+++. ..+..|.||||+|+..| +.+++++|++.|++++..+..|.||
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 176 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCH
Confidence 5555555544 333332 13567889999999999 9999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHhCCCC-----CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904 217 LMEAASGGYVEVGRVLLDKGAD-----VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291 (596)
Q Consensus 217 L~~A~~~g~~~iv~~Ll~~g~~-----~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~ 291 (596)
||+|+..|+.+++++|++.|++ ++. .+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDY--ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTC--CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 9999999999999999999888 666 567899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCccc------------CCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 292 GHLSVVELLCKHGADIDS------------QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 292 g~~~iv~~Ll~~gad~~~------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
|+.++|++|+++|++++. .+..++||++.|+..|+.+.+..|+..+.
T Consensus 255 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~ 313 (364)
T 3ljn_A 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313 (364)
T ss_dssp CCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence 999999999999877533 45678899999999998888888887653
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.3e-39 Score=315.23 Aligned_cols=216 Identities=28% Similarity=0.328 Sum_probs=176.6
Q ss_pred cCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Q psy904 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200 (596)
Q Consensus 121 ~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll 200 (596)
.++.+++++|+..|++++... +..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+
T Consensus 33 ~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll 110 (253)
T 1yyh_A 33 EDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI 110 (253)
T ss_dssp -------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 347888888888888775432 234888999999999999999999988888776 677889999999999999999999
Q ss_pred hcCC-CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC
Q psy904 201 DRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK 279 (596)
Q Consensus 201 ~~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~ 279 (596)
+.+. +++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus 111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 188 (253)
T 1yyh_A 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188 (253)
T ss_dssp HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 9887 8888899999999999999999999999999999887 567899999999999999999999999999999999
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340 (596)
Q Consensus 280 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 340 (596)
.|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+|+.+|.......
T Consensus 189 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~ 249 (253)
T 1yyh_A 189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249 (253)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999875543
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.1e-40 Score=342.50 Aligned_cols=277 Identities=20% Similarity=0.209 Sum_probs=207.3
Q ss_pred ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85 (596)
Q Consensus 6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A 85 (596)
..|.+|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|+++.. ..|.||||+|
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A 91 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLA 91 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999999999986544 4688999999
Q ss_pred HHCCcHHHHHHHHhC----CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCC-----CccccCCCCCCCcHHHHHHHc
Q psy904 86 CSGGRYEVVELLLTR----GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-----EINSRTGSKLGISPLMLAAMN 156 (596)
Q Consensus 86 ~~~g~~eivk~LL~~----g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~-----~~~~~~~~~~g~t~L~~A~~~ 156 (596)
+..|+.++|++|++. |.+++. ++.... .+.....+..|.||||+|+..
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 148 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPES-----------------------LLNECDEREVNEIGSHVKHCKGQTALHWCVGL 148 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHH-----------------------HHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred HHcCCHHHHHHHHHhccccCCCHHH-----------------------HHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence 999999999999987 655543 000000 000011222356666666666
Q ss_pred C--CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCC-----cccccCCCChHHHHHHhcCcHHHH
Q psy904 157 G--HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN-----VEHRAKTGLTPLMEAASGGYVEVG 229 (596)
Q Consensus 157 g--~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~~iv 229 (596)
| +.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++
T Consensus 149 g~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 149 GPEYLEMIKILVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227 (364)
T ss_dssp CGGGHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred CCchHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence 6 666666666666666554 45566777777777777777777776666 777777888888888888888888
Q ss_pred HHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC------------CCCCCCChHHHHHHhcCcHHHH
Q psy904 230 RVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE------------VKNKKGNSPLWLAANGGHLSVV 297 (596)
Q Consensus 230 ~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~------------~~d~~g~TpL~~A~~~g~~~iv 297 (596)
++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++ ..+..|+|||++|+..|+.+.+
T Consensus 228 ~~Ll~~gad~~~--~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v 305 (364)
T 3ljn_A 228 MRFVEMGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305 (364)
T ss_dssp HHHHTTTCCTTC--CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred HHHHHcCCCCCC--CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHH
Confidence 888888888776 55678888888888888888888888776542 2566789999999999999888
Q ss_pred HHHHHCCCCcccCC
Q psy904 298 ELLCKHGADIDSQD 311 (596)
Q Consensus 298 ~~Ll~~gad~~~~~ 311 (596)
..|+..+++....+
T Consensus 306 ~~ll~~~~~~~~~~ 319 (364)
T 3ljn_A 306 LQLLQEKLDEVVRS 319 (364)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 88888776654433
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-38 Score=316.31 Aligned_cols=261 Identities=26% Similarity=0.262 Sum_probs=156.0
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGAD---IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS 83 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~---i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~ 83 (596)
.+.+|.||||+||..|++++|++|++.|++ ++..+..|.||||+|+..|+.++|++|+++|+++
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------- 71 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV------------- 71 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-------------
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------
Confidence 455555666666666666666666555554 4555555555555555555555555555555544
Q ss_pred HHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHH
Q psy904 84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163 (596)
Q Consensus 84 ~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~ 163 (596)
+..+..|.||||+|+..|+.+++++|+..+++....... +.+.
T Consensus 72 ---------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~------------ 114 (282)
T 1oy3_D 72 ---------------------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TYLT------------ 114 (282)
T ss_dssp ---------------------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------
T ss_pred ---------------------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HHhh------------
Confidence 444444444444444444444444444444433221110 0000
Q ss_pred HHHhcCCCcccccccCCCcHHHHHHHcCC-HHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCC
Q psy904 164 LLLDMGSDINAQIETNRNTALTLACFQGR-HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP 242 (596)
Q Consensus 164 ~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~ 242 (596)
.+... ....+.++++.++..+. ..+...+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 115 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 187 (282)
T 1oy3_D 115 ----QSQDC---TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187 (282)
T ss_dssp ------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred ----ccccc---CcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 00000 01122234444433332 23334455567788889999999999999999999999999999999874
Q ss_pred CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904 243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF 322 (596)
Q Consensus 243 ~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~ 322 (596)
. +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|.
T Consensus 188 ~-~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 188 E-PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp C-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred C-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 2 235999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HcC
Q psy904 323 RKG 325 (596)
Q Consensus 323 ~~g 325 (596)
...
T Consensus 267 ~~~ 269 (282)
T 1oy3_D 267 SDS 269 (282)
T ss_dssp ---
T ss_pred Ccc
Confidence 654
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=309.75 Aligned_cols=258 Identities=23% Similarity=0.321 Sum_probs=173.5
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCC
Q psy904 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89 (596)
Q Consensus 10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g 89 (596)
+|.||||+||..|+.++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcC
Confidence 5788999999999999999999988888888888888888888888888888888888877654 456778888888888
Q ss_pred cHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy904 90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169 (596)
Q Consensus 90 ~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~ 169 (596)
+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++..... |.||||+|+..|+.+++++|++.|
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH--LGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp CHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT--TBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCC--CCCHHHHHHHhCCHHHHHHHHHcC
Confidence 88888888888777764 334667777777777777777777766666554432 556666666666666666666666
Q ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCC
Q psy904 170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249 (596)
Q Consensus 170 ~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~ 249 (596)
++++. +..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+..+ +++++|++.+.+..
T Consensus 158 ~~~~~--~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~--------- 224 (261)
T 2xai_A 158 ADVNQ--GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPS--------- 224 (261)
T ss_dssp CCTTC--CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCC---------
T ss_pred CCCCC--CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCcc---------
Confidence 65553 344555555555555555555555555555555555555555555333 24445554432211
Q ss_pred cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302 (596)
Q Consensus 250 t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 302 (596)
..+ .++++.+|..|.||||+|.....+..++-++.
T Consensus 225 -l~~-----------------~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 225 -LMQ-----------------LCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp -HHH-----------------HHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred -HHH-----------------HHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 000 01234678889999999998888777775553
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.6e-37 Score=299.20 Aligned_cols=228 Identities=29% Similarity=0.405 Sum_probs=170.3
Q ss_pred CccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCc
Q psy904 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNT 182 (596)
Q Consensus 103 ~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t 182 (596)
+++..+..|.||||+|+..|+.+++++|++.|++++..... |.||||+|+..|+.+++++|++.|++++.. +..|.|
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t 79 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED--QRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGST 79 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCC
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC--CCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCc
Confidence 34455555666666666666666666666665555544332 566666666666666666666666665544 455667
Q ss_pred HHHHHHHcCCHHHHHHHHhcC-CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904 183 ALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261 (596)
Q Consensus 183 ~L~~A~~~~~~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~ 261 (596)
|||+|+..++.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAAFSGCV 157 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHHCCCH
Confidence 777777777777777777776 67777778888888888888888888888888888776 456788888888888888
Q ss_pred HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335 (596)
Q Consensus 262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 335 (596)
+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.+|+...+..|+.
T Consensus 158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888766555543
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.5e-38 Score=306.78 Aligned_cols=244 Identities=25% Similarity=0.305 Sum_probs=141.1
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccC-CCCCCCcH
Q psy904 36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH-RNVSDYTP 114 (596)
Q Consensus 36 ~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~-~d~~g~t~ 114 (596)
|+|.+|..|.||||+|+..|+.- .....+...++.+++++|+..|++++. .+..|.||
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~---------------------~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~ 60 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60 (253)
T ss_dssp -----------------------------------------------------------------------CCCTTSCCH
T ss_pred CCCCCCCCCCcHHHHHHhccccc---------------------cccchhhcCCChHHHHHHHHccCCcccccCCCCCcH
Confidence 45666666666666666665210 000112333444444444444444422 23444444
Q ss_pred HHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCH
Q psy904 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRH 193 (596)
Q Consensus 115 L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~ 193 (596)
||+|+..|+.+++++|++.|++++.... .|.||||+|+..|+.+++++|++.+. +++.. +..|.||||+|+..++.
T Consensus 61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~ 137 (253)
T 1yyh_A 61 LHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVE 137 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC-CTTCCCHHHHHHHHTCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc-CCCCCcHHHHHHHcChH
Confidence 4444444444444444444444443322 24455555555555555555555554 33332 45667777777777888
Q ss_pred HHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy904 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ 273 (596)
Q Consensus 194 ~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d 273 (596)
+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus 138 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAKVLLDHFAN 215 (253)
T ss_dssp SHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 888888888888888888899999999999999999999999998887 567899999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305 (596)
Q Consensus 274 i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 305 (596)
++.+|..|.||||+|+..|+.+++.+|.....
T Consensus 216 ~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 99999999999999999999999999987643
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.8e-38 Score=303.72 Aligned_cols=231 Identities=29% Similarity=0.356 Sum_probs=159.0
Q ss_pred cCCCChHHHHHHHCCcHHHHHHHHh----CCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHH
Q psy904 75 ERTKDTPLSLACSGGRYEVVELLLT----RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL 150 (596)
Q Consensus 75 ~~~~~t~L~~A~~~g~~eivk~LL~----~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L 150 (596)
+..|.||||+|+..|+.++|++|++ .|.+++..+..|.||||+|+..|+.+++++|++.|++++.... .|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCCHH
Confidence 4556666666666666666666665 5566666666666666666666666666666665555544332 244555
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHH
Q psy904 151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230 (596)
Q Consensus 151 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~ 230 (596)
|+|+..|+.+++++|++.+... +.+++..+..|.||||+|+..|+.++++
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 133 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPG------------------------------TLDLEARNYDGLTALHVAVNTECQETVQ 133 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTT------------------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCc------------------------------cccccccCcCCCcHHHHHHHcCCHHHHH
Confidence 5555555555555554444310 1256666777888888888888888888
Q ss_pred HHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccC
Q psy904 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310 (596)
Q Consensus 231 ~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~ 310 (596)
+|++.|++++... ...|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 134 ~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 134 LLLERGADIDAVD-IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212 (241)
T ss_dssp HHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHcCCCccccc-ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence 8888888777631 156788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 311 DNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 311 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
|..|.|||++|+..|+.++++.|++.++
T Consensus 213 ~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 213 NCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 8888888888888888888888877653
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.7e-37 Score=297.09 Aligned_cols=225 Identities=26% Similarity=0.324 Sum_probs=175.7
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904 111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190 (596)
Q Consensus 111 g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 190 (596)
+.+||+.|+..|+++++++|+..+.... ...+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHHHHc
Confidence 3455555555555555555554433221 112233666666666666666666666666666554 55667788888888
Q ss_pred CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy904 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270 (596)
Q Consensus 191 ~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 270 (596)
++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFY 161 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 888888888888888888888888999999999999999999998888876 557788999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 271 g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++..++++|+++|++
T Consensus 162 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988765
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4.6e-37 Score=298.99 Aligned_cols=234 Identities=29% Similarity=0.358 Sum_probs=184.9
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCC
Q psy904 37 IEHRDKKGFTPLILAATAGHDKVVDILLN----HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY 112 (596)
Q Consensus 37 i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~ 112 (596)
++..|..|.||||+|+..|+.+++++|++ .+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 35678999999999999999999999997 67777654 56799999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q psy904 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192 (596)
Q Consensus 113 t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 192 (596)
||||+|+..|+.+++++|++.+..... +++. .+..|.||||+|+..++
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~-------------------------------~~~~-~~~~g~t~L~~A~~~~~ 128 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTL-------------------------------DLEA-RNYDGLTALHVAVNTEC 128 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSC-------------------------------CTTC-CCTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccc-------------------------------cccc-cCcCCCcHHHHHHHcCC
Confidence 999999999999999999999863211 1111 12334455555555566
Q ss_pred HHHHHHHHhcCCCccccc-CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy904 193 HEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271 (596)
Q Consensus 193 ~~ii~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g 271 (596)
.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|
T Consensus 129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 206 (241)
T 1k1a_A 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA--QMYSGSSALHSASGRGLLPLVRTLVRSG 206 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 666666666666666666 6678888888888888888888888888776 4577889999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305 (596)
Q Consensus 272 ~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 305 (596)
++++.+|..|.||||+|+..|+.++++.|++.++
T Consensus 207 a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 207 ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999999999999999987764
No 24
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6e-37 Score=305.42 Aligned_cols=229 Identities=24% Similarity=0.222 Sum_probs=156.4
Q ss_pred ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85 (596)
Q Consensus 6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A 85 (596)
..+..|.||||+||..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++++........ +.
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~---- 112 (282)
T 1oy3_D 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TY---- 112 (282)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HH----
Confidence 45678999999999999999999999999999999999999999999999999999999999875432110 00
Q ss_pred HHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy904 86 CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165 (596)
Q Consensus 86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~L 165 (596)
+..+. ......+.++++.++..+.. ..+...+
T Consensus 113 ------------~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~ 144 (282)
T 1oy3_D 113 ------------LTQSQ--DCTPDTSHAPAAVDSQPNPE----------------------------------NEEEPRD 144 (282)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ------------hhccc--ccCcchhcchhhhccccccc----------------------------------hhhhhhh
Confidence 00000 01111223333333222211 1122222
Q ss_pred HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCC-CChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC
Q psy904 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPV 244 (596)
Q Consensus 166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~ 244 (596)
...+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++. .
T Consensus 145 ~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~--~ 221 (282)
T 1oy3_D 145 EDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--R 221 (282)
T ss_dssp CCGGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--C
T ss_pred hhhhhcCCCc-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc--c
Confidence 2333344443 567778888888888888888888888888887754 99999999999999999999999999887 5
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC
Q psy904 245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292 (596)
Q Consensus 245 ~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g 292 (596)
+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|....
T Consensus 222 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred ccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 678999999999999999999999999999999999999999998754
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.5e-36 Score=292.21 Aligned_cols=230 Identities=28% Similarity=0.393 Sum_probs=172.2
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcH
Q psy904 35 ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114 (596)
Q Consensus 35 ~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~ 114 (596)
++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 456667777777777777777777777777777666543 3456677777777777777777777776666666666666
Q ss_pred HHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q psy904 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194 (596)
Q Consensus 115 L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 194 (596)
||+|+..|+.+++++|++.|. .+++.. +..|.||||+|+..++.+
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~----------------------------------~~~~~~-~~~g~t~L~~A~~~~~~~ 125 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQ----------------------------------MDVNCQ-DDGGWTPMIWATEYKHVD 125 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTC----------------------------------CCTTCC-CTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCC----------------------------------CCcccC-CCCCCCHHHHHHHcCCHH
Confidence 666665555555555555541 222222 445667777777777777
Q ss_pred HHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy904 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274 (596)
Q Consensus 195 ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di 274 (596)
++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|+++|+++
T Consensus 126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 77777777777777888888999999999999999999999988887 5678899999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904 275 EVKNKKGNSPLWLAANGGHLSVVELLCK 302 (596)
Q Consensus 275 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 302 (596)
+.+|..|.||||+|+..|+...+..|++
T Consensus 204 ~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 204 TLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999866655543
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=293.20 Aligned_cols=230 Identities=23% Similarity=0.228 Sum_probs=170.1
Q ss_pred CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHH
Q psy904 107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL 186 (596)
Q Consensus 107 ~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~ 186 (596)
.|..+.|+|+.|+..|+.+++++|++.|.+++.... .|.||||+|+..|+.+++++|++.|.+++...+..+.||||+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 344455555555555555555555555555444332 255666666666666666666666666555545556677777
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc-HHHHH
Q psy904 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH-CRFVE 265 (596)
Q Consensus 187 A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~-~~iv~ 265 (596)
|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++ ..+++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHHHhCChHHHHH
Confidence 7777777777778777777777788888888888888888888888888887776 55678888888886555 78888
Q ss_pred HHHHCCCCCCCCCC-CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904 266 LLLSKGAQVEVKNK-KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340 (596)
Q Consensus 266 ~Ll~~g~di~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 340 (596)
+|+..|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++++..
T Consensus 161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 88888888888886 8888888888888888888888888888888888888888888888888888888887754
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.9e-36 Score=292.78 Aligned_cols=226 Identities=27% Similarity=0.381 Sum_probs=165.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCC
Q psy904 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123 (596)
Q Consensus 44 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~ 123 (596)
+.+|||.|+..|+.+++++|+..+.......+..|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 85 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX 85 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence 45566666666666666666655554444444555566666666666666666665555555555555555555555554
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy904 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203 (596)
Q Consensus 124 ~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g 203 (596)
. +++++|++.|++++.. +..|.||||+|+..++.+++++|++.|
T Consensus 86 ~-----------------------------------~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g 129 (231)
T 3aji_A 86 D-----------------------------------EIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGG 129 (231)
T ss_dssp H-----------------------------------HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred H-----------------------------------HHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4 4555555544444443 445667777777777777777777777
Q ss_pred CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCh
Q psy904 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283 (596)
Q Consensus 204 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~T 283 (596)
++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus 130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 207 (231)
T 3aji_A 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI--QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207 (231)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc--cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 78888888889999999999999999999999988887 5678999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHCCCCc
Q psy904 284 PLWLAANGGHLSVVELLCKHGADI 307 (596)
Q Consensus 284 pL~~A~~~g~~~iv~~Ll~~gad~ 307 (596)
|||+|+..++.+++++|+++|+++
T Consensus 208 ~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 208 PLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhHHHHHHHHHccccccC
Confidence 999999999999999999988764
No 28
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5e-37 Score=307.13 Aligned_cols=238 Identities=21% Similarity=0.209 Sum_probs=207.8
Q ss_pred CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168 (596)
Q Consensus 89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~ 168 (596)
...+++++|... +++..|..|.||||+|+..|+.+++++|++.|++++... |.||||+|+..|+.+++++|+++
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHHTTSSSCHHHHHHHHT
T ss_pred CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHHHHcCCHHHHHHHHHC
Confidence 345555666554 467788888899999999999999999999888877663 78999999999999999999999
Q ss_pred CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC
Q psy904 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG-LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS 247 (596)
Q Consensus 169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~ 247 (596)
|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++.. ...
T Consensus 85 ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~ 160 (285)
T 3kea_A 85 GLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAI 160 (285)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CST
T ss_pred CCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccC
Confidence 9988875 6688899999999999999999999999999999999 7999999999999999999999987632 127
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChH-HHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCC
Q psy904 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP-LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326 (596)
Q Consensus 248 g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~ 326 (596)
|.||||+|+..|+.+++++|+++|++++..|..|.|| ||+|+..|+.+++++|+++|++++..+. .|+..|+
T Consensus 161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~ 233 (285)
T 3kea_A 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDD 233 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTC
T ss_pred CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCC
Confidence 8999999999999999999999999999999999998 9999999999999999999999998883 5677899
Q ss_pred HHHHHHHHhCcCCCCCc
Q psy904 327 VKAVRWMVNHVAQFPSD 343 (596)
Q Consensus 327 ~~iv~~Ll~~~~~~~~~ 343 (596)
.++|++|+++|+++...
T Consensus 234 ~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 234 AEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCc
Confidence 99999999999865543
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=305.77 Aligned_cols=232 Identities=27% Similarity=0.339 Sum_probs=148.6
Q ss_pred CCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHc
Q psy904 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156 (596)
Q Consensus 77 ~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~ 156 (596)
.+.++|+.||..|++++|++||+.|.+....... .....+..+.|||+.|+..
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~---------------------------~~~~~~~~~~t~L~~a~~~ 62 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED---------------------------TVSAADPEFCHPLCQCPKC 62 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------------
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccc---------------------------cccccCccCCCHHHHHHHh
Confidence 3456777777777777777777666542110000 0111122366777777766
Q ss_pred CCH-HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhC
Q psy904 157 GHT-AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235 (596)
Q Consensus 157 g~~-eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 235 (596)
++. .++.+|+..|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.
T Consensus 63 ~~~~~~v~~Ll~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 141 (269)
T 4b93_B 63 APAQKRLAKVPASGLGVNVT-SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141 (269)
T ss_dssp ------------CCCCTTCC-CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC
Confidence 654 3677777777777765 56777888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCC
Q psy904 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV 315 (596)
Q Consensus 236 g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~ 315 (596)
|++++. .+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.
T Consensus 142 g~~~n~--~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~ 219 (269)
T 4b93_B 142 NAKPNK--KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQR 219 (269)
T ss_dssp TCCSCC--CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred CCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 888776 456788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHcCC-HHHHHHHHhCcC
Q psy904 316 SCLMAAFRKGH-VKAVRWMVNHVA 338 (596)
Q Consensus 316 t~L~~A~~~g~-~~iv~~Ll~~~~ 338 (596)
|||++|+.+++ .+++++|...++
T Consensus 220 TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 220 TAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp CSGGGSCTTCHHHHHTTC------
T ss_pred CHHHHHHhCCcHHHHHHHHHHhch
Confidence 88888877765 344444444444
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=288.77 Aligned_cols=231 Identities=26% Similarity=0.310 Sum_probs=201.9
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC 86 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 86 (596)
.|..|.|+|+.|+..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999998877777999999999
Q ss_pred HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC-HHHHHHH
Q psy904 87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH-TAAVKLL 165 (596)
Q Consensus 87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~-~eiv~~L 165 (596)
..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..... |.||||+|+..++ .+++++|
T Consensus 85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN--GMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHCCSSTTHHHH
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC--CCcHHHHHHHhCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888766543 8899999886665 7888888
Q ss_pred HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCC
Q psy904 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239 (596)
Q Consensus 166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~ 239 (596)
+..|++++......|.||||+|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.+...
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 88888887765457778888888888888888888888888888888888888888888888888888776554
No 31
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-36 Score=305.24 Aligned_cols=274 Identities=22% Similarity=0.296 Sum_probs=174.0
Q ss_pred HHHhcCcHHHHHHHHHCCCCcccc---------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904 17 LACAGGHEELVELLLSRGADIEHR---------DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87 (596)
Q Consensus 17 ~A~~~g~~~ivk~Ll~~g~~i~~~---------d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 87 (596)
.++..|+.+.+..++..+.++... +..|.||||+||..|+.++|++|+++|++++.. +..|.||||+|+.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 82 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHH
Confidence 456667777777777665443321 223446666666666666666666666665443 3456666666666
Q ss_pred CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167 (596)
Q Consensus 88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~ 167 (596)
.|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.... .|.||||+|+..|+.+++.+++.
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS--EGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCC--CCCCHHHHHHhcchHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666655554432 25566666655555555555543
Q ss_pred cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC
Q psy904 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS 247 (596)
Q Consensus 168 ~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~ 247 (596)
. .+.+++..+..+.++++. .+..++..+...+. ..+..
T Consensus 161 ~---------------------------------~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~-~~~~~ 198 (299)
T 1s70_B 161 R---------------------------------QGVDIEAARKEEERIMLR--------DARQWLNSGHINDV-RHAKS 198 (299)
T ss_dssp H---------------------------------HTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCC-CCTTT
T ss_pred h---------------------------------cCCCchhhhhhhhhHHHH--------HHHHHHhccCcchh-hhcCC
Confidence 2 122222211111122221 22333444333322 24567
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCH
Q psy904 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327 (596)
Q Consensus 248 g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~ 327 (596)
|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|... ..
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~ 277 (299)
T 1s70_B 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-IL 277 (299)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GG
T ss_pred CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998653 44
Q ss_pred HHHHHHHhC
Q psy904 328 KAVRWMVNH 336 (596)
Q Consensus 328 ~iv~~Ll~~ 336 (596)
.++..|+..
T Consensus 278 ~~l~~l~~~ 286 (299)
T 1s70_B 278 GYLEELQKK 286 (299)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.1e-35 Score=286.72 Aligned_cols=219 Identities=26% Similarity=0.336 Sum_probs=155.7
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccccCCCcHHHHHHH
Q psy904 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG--SDINAQIETNRNTALTLACF 189 (596)
Q Consensus 112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~~~t~L~~A~~ 189 (596)
.||||+|+..|+.+++++|++.++++... .+..|.||||+|+..|+.+++++|++.| .+++...+..|.||||+|+.
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 34444444444444444444443332221 1122455555555555555555555555 33333234556677777777
Q ss_pred cCCHHHHHHHHhcC--CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q psy904 190 QGRHEVVSLLLDRK--ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267 (596)
Q Consensus 190 ~~~~~ii~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~L 267 (596)
.++.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHH
Confidence 77777777777776 67777778888888888888888888888888888876 456788899999988899999999
Q ss_pred HHCC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHH-HCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 268 LSKG-AQVEVKNKKGNSPLWLAANGGHLSVVELLC-KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 268 l~~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
+++| ++++..|..|.||||+|+..|+.+++++|+ ++|++++.+|..|.|||++|+.. +++++|+++
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 9888 888888889999999999999999999998 78999999998999999988654 466677654
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=301.41 Aligned_cols=232 Identities=29% Similarity=0.400 Sum_probs=154.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc-------cccCCCChHHHHHHHCCcH-HHHHHHHhCCCCccCCCCC
Q psy904 39 HRDKKGFTPLILAATAGHDKVVDILLNHKADMEA-------QSERTKDTPLSLACSGGRY-EVVELLLTRGANKEHRNVS 110 (596)
Q Consensus 39 ~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~-------~~~~~~~t~L~~A~~~g~~-eivk~LL~~g~~~~~~d~~ 110 (596)
..|..+.++|+.||..|+.++|++|++.+.+... ..+..+.|||++|+..++. .++.+|+..|++++..|..
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 4566788999999999999999999999876432 1122344455555444333 2444444444444444444
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904 111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190 (596)
Q Consensus 111 g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 190 (596)
|.||||+|+..|+.+++++|+..|++++.. +..|.||++.|+..
T Consensus 86 -----------------------------------G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~ 129 (269)
T 4b93_B 86 -----------------------------------GSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQ 129 (269)
T ss_dssp -----------------------------------SCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred -----------------------------------CCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCcccccccc
Confidence 555555555555555555555555555544 45566777888888
Q ss_pred CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy904 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270 (596)
Q Consensus 191 ~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~ 270 (596)
++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.++|++|+++
T Consensus 130 ~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~--~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA--SNNKGNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc--cccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 888888888888888888899999999999999999999999999999887 567899999999999999999999999
Q ss_pred CCCCCCCCCCCChHHHHHHhcCc-HHHHHHHHHCCCCcc
Q psy904 271 GAQVEVKNKKGNSPLWLAANGGH-LSVVELLCKHGADID 308 (596)
Q Consensus 271 g~di~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~gad~~ 308 (596)
|+|++.+|..|.||||+|+.+++ .+++++|...++.++
T Consensus 208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 99999999999999999998886 456666666665443
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-35 Score=285.30 Aligned_cols=217 Identities=28% Similarity=0.321 Sum_probs=158.3
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201 (596)
Q Consensus 122 g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~ 201 (596)
|+++++++|++.|++++... +..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444445555544443321 122555555555555555555555555555543 4555666666666666666666666
Q ss_pred cCC-CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC
Q psy904 202 RKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK 280 (596)
Q Consensus 202 ~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~ 280 (596)
.+. +++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence 655 6666777788888888888888888888888887776 4567888888888888888888888888888888888
Q ss_pred CChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS 342 (596)
Q Consensus 281 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 342 (596)
|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|+...+
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence 88888888888888888888888888888888888888888888888888888888886544
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.5e-36 Score=302.03 Aligned_cols=241 Identities=18% Similarity=0.175 Sum_probs=165.9
Q ss_pred CcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCC
Q psy904 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG 101 (596)
Q Consensus 22 g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g 101 (596)
+..+++++|... +++..|..|.||||+|+..|+.++|++|+++|++++.. .|.||||+|+..|+.++|++|+++|
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 345555555554 57788888999999999999999999999998887665 4788999998888888888888888
Q ss_pred CCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC
Q psy904 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG-ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180 (596)
Q Consensus 102 ~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g-~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~ 180 (596)
++++..+..|.||||+|+..|+.+++++|+++|++++..... | .||||+|+..|+.+++++|+++|++....
T Consensus 86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----- 158 (285)
T 3kea_A 86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL----- 158 (285)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSS--GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-----
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCccccc-----
Confidence 888888888888888888888888888887777766654432 4 56666666666666666666665543211
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcH-HHHHHHcC
Q psy904 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA-LTIAADKG 259 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~ 259 (596)
..|.||||+|+..|+.+++++|+++|++++. .+..|.|| ||+|+..|
T Consensus 159 ------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~--~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 159 ------------------------------AILLSCIHITIKNGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp ------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT--TCCCBCCTTHHHHHHHT
T ss_pred ------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCCCCc--ccCCCCChHHHHHHHcC
Confidence 1445555555555555555555555555554 34455565 66666666
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCC
Q psy904 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR 313 (596)
Q Consensus 260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~ 313 (596)
+.+++++|+++|++++..| +.|+..|+.+++++|+++|++++..+..
T Consensus 207 ~~~~v~~Ll~~gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~~~~ 253 (285)
T 3kea_A 207 DIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSDSYT 253 (285)
T ss_dssp CHHHHHHHTTSCBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTCTTT
T ss_pred CHHHHHHHHHcCCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCcccc
Confidence 6666666666666666655 2455667777777777777766654433
No 36
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-35 Score=283.42 Aligned_cols=219 Identities=26% Similarity=0.292 Sum_probs=158.2
Q ss_pred ChHHHHHHHCCcHHHHHHHHhCCCCccC-CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccC-CCCCCCcHHHHHHHc
Q psy904 79 DTPLSLACSGGRYEVVELLLTRGANKEH-RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT-GSKLGISPLMLAAMN 156 (596)
Q Consensus 79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~ 156 (596)
.||||+|+..|+.++|++|++.+.++.. .+..|.||||+|+..|+.+++++|++.|++++... .+..|.||||+|+..
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~ 82 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV 82 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence 3455555555555555555544443322 44455555555555555555555555553333322 333466666666666
Q ss_pred CCHHHHHHHHhcC--CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904 157 GHTAAVKLLLDMG--SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234 (596)
Q Consensus 157 g~~eiv~~Ll~~~--~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 234 (596)
|+.+++++|++.| ++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus 83 ~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 83 GNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp CCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 6666666666666 454443 5567788888888888888888888888888889999999999999999999999999
Q ss_pred CC-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904 235 KG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLL-SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303 (596)
Q Consensus 235 ~g-~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll-~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 303 (596)
.| ++++. .+..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||||+|+.. +++++|+++
T Consensus 162 ~g~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp TTCCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred cCcccccC--cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99 88877 5688999999999999999999999 89999999999999999999765 566666653
No 37
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-35 Score=298.52 Aligned_cols=250 Identities=27% Similarity=0.336 Sum_probs=206.3
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC 86 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~ 86 (596)
.+..|.|+||+||..|++++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~ 114 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAA 114 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999998765 567999999999
Q ss_pred HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy904 87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH-GAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165 (596)
Q Consensus 87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~L 165 (596)
..|+.++|++|+++|++++..+..|.||||+|+..++.+++.+++.. +.+++.. ...
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~-------------~~~--------- 172 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------------RKE--------- 172 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH-------------HHH---------
T ss_pred HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhh-------------hhh---------
Confidence 99999999999999999999999999999999999999999998864 2222110 000
Q ss_pred HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCC
Q psy904 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245 (596)
Q Consensus 166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~ 245 (596)
+.++++. .+..++..........+..|.||||+|+..|+.+++++|++.|++++. .+
T Consensus 173 --------------~~~~~~~-------~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~--~d 229 (299)
T 1s70_B 173 --------------EERIMLR-------DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI--KD 229 (299)
T ss_dssp --------------HHHHHHH-------HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CC
T ss_pred --------------hhhHHHH-------HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC--cC
Confidence 0011111 112233333344445567889999999999999999999999999887 56
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904 246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303 (596)
Q Consensus 246 ~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 303 (596)
..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ...++..|+..
T Consensus 230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999764 45555555543
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.5e-35 Score=280.98 Aligned_cols=216 Identities=23% Similarity=0.276 Sum_probs=157.5
Q ss_pred CCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCC
Q psy904 55 GHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134 (596)
Q Consensus 55 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g 134 (596)
|+.+++++|+++|++++...+..|.||||+|+..|+.++|++|++.|++++..+..|.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~---------------------- 59 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR---------------------- 59 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC----------------------
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC----------------------
Confidence 4455555555555555544444555555555555555555555555555555554444
Q ss_pred CCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213 (596)
Q Consensus 135 ~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g 213 (596)
||||+|+..|+.+++++|++.+. +++. .+..+.||||+|+..++.+++++|++.|++++..+..|
T Consensus 60 -------------t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 125 (223)
T 2f8y_A 60 -------------TPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125 (223)
T ss_dssp -------------CHHHHHHHTTCHHHHHHHHHBTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred -------------CHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC
Confidence 45555555555555555555444 2222 24556677777777778888888888888888888889
Q ss_pred ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc
Q psy904 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293 (596)
Q Consensus 214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~ 293 (596)
.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence 9999999999999999999999988887 55788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcc
Q psy904 294 LSVVELLCKHGADID 308 (596)
Q Consensus 294 ~~iv~~Ll~~gad~~ 308 (596)
.+++++|+++|+...
T Consensus 204 ~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 204 HDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHHHHHTTCSSC
T ss_pred hHHHHHHHHcCCCcc
Confidence 999999999998654
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-36 Score=308.16 Aligned_cols=274 Identities=15% Similarity=0.088 Sum_probs=155.3
Q ss_pred HHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHH
Q psy904 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96 (596)
Q Consensus 17 ~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~ 96 (596)
.++.....++|++|++.|++++..+..|.|+++ |+.++|++|+++|.++.. +++++|+.....
T Consensus 25 ~~~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-------~~~~~a~~~~~~----- 87 (327)
T 1sw6_A 25 GPIITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-------QEMPTSLNNDSS----- 87 (327)
T ss_dssp CCEEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------
T ss_pred cchhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-------ccchHhhhcccc-----
Confidence 333456678899999999999999999999987 999999999999877433 334333322100
Q ss_pred HHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccc-cCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Q psy904 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS-RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175 (596)
Q Consensus 97 LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~ 175 (596)
...........+.+|.|+..+..+++++|+..|++++. ... .|.||||+|+..|+.++|++|+++|++++..
T Consensus 88 -----~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~ 160 (327)
T 1sw6_A 88 -----NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE--HGNTPLHWLTSIANLELVKHLVKHGSNRLYG 160 (327)
T ss_dssp ---------------------CHHHHHHHHHHHCTTSCCCSCSCCST--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC
T ss_pred -----cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 00000000111223444444444444444444444444 221 2445555555555555555555555544433
Q ss_pred cccCCCcHHHHHHHcCC---HHHHHHHHhcC-CCcccccCCCChHHHHHHh----cCcHHHHHHHHhC------------
Q psy904 176 IETNRNTALTLACFQGR---HEVVSLLLDRK-ANVEHRAKTGLTPLMEAAS----GGYVEVGRVLLDK------------ 235 (596)
Q Consensus 176 ~~~~~~t~L~~A~~~~~---~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~------------ 235 (596)
+..|.||||+|+..|+ .+++..|++.+ .+++..+..|.||||+|+. .|+.+++++|++.
T Consensus 161 -d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 239 (327)
T 1sw6_A 161 -DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239 (327)
T ss_dssp -CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred -CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchH
Confidence 3444455555555444 34444444443 3455555555555555555 5555555555544
Q ss_pred --------CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904 236 --------GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307 (596)
Q Consensus 236 --------g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 307 (596)
|++++. .+..|.||||.|+. +++|+++ +++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus 240 i~~~~~~~g~~~~~--~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 240 IQSGTNEKESKPND--KNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309 (327)
T ss_dssp EEEC------------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred HHhhhhcccCCccc--ccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 666666 55788899998885 8888888 57888888999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHcC
Q psy904 308 DSQDNRKVSCLMAAFRKG 325 (596)
Q Consensus 308 ~~~~~~g~t~L~~A~~~g 325 (596)
+.+|..|.||||+|+.+|
T Consensus 310 ~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 310 FIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCCTTSCCGGGGTCC--
T ss_pred cccCCCCCCHHHHHHhcC
Confidence 999999999999887654
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1e-35 Score=303.71 Aligned_cols=256 Identities=14% Similarity=0.067 Sum_probs=183.5
Q ss_pred cCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC
Q psy904 54 AGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133 (596)
Q Consensus 54 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~ 133 (596)
....++|++|+++|++++.. +..|.|+++ |++++|++||++|++++. +++++|+.....
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~--------- 87 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSS--------- 87 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred hhcCchHHHHhhCCcccccC-CCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcccc---------
Confidence 34556677777777776654 345666665 677777777777665322 344444332100
Q ss_pred CCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213 (596)
Q Consensus 134 g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g 213 (596)
. ..........+.+|+++..+..+++++|+..|++++.+.+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 88 -~--~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g 164 (327)
T 1sw6_A 88 -N--RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 164 (327)
T ss_dssp -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC
T ss_pred -c--ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 0 0000111123456888888889999999999999998558899999999999999999999999999999999999
Q ss_pred ChHHHHHHhcCc---HHHHHHHHhCC-CCCCCCCCCCCCCcHHHHHHH----cCcHHHHHHHHHC---------------
Q psy904 214 LTPLMEAASGGY---VEVGRVLLDKG-ADVNAPPVPSSRDTALTIAAD----KGHCRFVELLLSK--------------- 270 (596)
Q Consensus 214 ~t~L~~A~~~g~---~~iv~~Ll~~g-~~~~~~~~~~~g~t~L~~A~~----~~~~~iv~~Ll~~--------------- 270 (596)
.||||+|+..|+ .+++..|++.+ ++++. .+..|.||||+|+. .|+.+++++|++.
T Consensus 165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~--~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~ 242 (327)
T 1sw6_A 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL--EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242 (327)
T ss_dssp CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred CCHHHHHHHhcccccHHHHHHHHHhhhccccC--CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence 999999999998 67777777765 55665 66899999999999 8999999999987
Q ss_pred -----CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904 271 -----GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD 343 (596)
Q Consensus 271 -----g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 343 (596)
|++++..+..|.||||+|+. +++|+++ +++.+|..|.||||+|+..|+.++|++|+++|+++...
T Consensus 243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp C----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred hhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 89999999999999999996 8999998 68889999999999999999999999999999987654
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.1e-33 Score=269.02 Aligned_cols=196 Identities=23% Similarity=0.296 Sum_probs=146.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----ccccCCCChHHHH
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDM-GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-----EHRAKTGLTPLME 219 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~-----~~~~~~g~t~L~~ 219 (596)
|.||||+|+..|+.+++++|++. |.+++.. +..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 44555555555555555555554 4444443 444555555555555555555555555544 3445566666666
Q ss_pred HHhcCcHHHHHHHHhCCCCCCCCC-----------CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904 220 AASGGYVEVGRVLLDKGADVNAPP-----------VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288 (596)
Q Consensus 220 A~~~g~~~iv~~Ll~~g~~~~~~~-----------~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A 288 (596)
|+..|+.+++++|++.|++++... .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 666666666666666666666532 234799999999999999999999999999999999999999999
Q ss_pred HhcCcHHHH----HHHHHCCCCc------ccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904 289 ANGGHLSVV----ELLCKHGADI------DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS 342 (596)
Q Consensus 289 ~~~g~~~iv----~~Ll~~gad~------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 342 (596)
+..|+.+++ ++|+++|+++ +.+|..|.|||++|+..|+.++|++|+++|+....
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchh
Confidence 999999988 9999999988 58899999999999999999999999999876543
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.8e-32 Score=254.93 Aligned_cols=190 Identities=27% Similarity=0.349 Sum_probs=174.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc
Q psy904 145 LGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223 (596)
Q Consensus 145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 223 (596)
++.|||+.|+..|+.+++++|+..+. +++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 47789999999999999999998876 66654 67888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHH-hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCCChHHHHHHhcCc-----HHH
Q psy904 224 GYVEVGRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG-AQVEVKNKKGNSPLWLAANGGH-----LSV 296 (596)
Q Consensus 224 g~~~iv~~Ll-~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g-~di~~~d~~g~TpL~~A~~~g~-----~~i 296 (596)
|+.+++++|+ ..+++++. .+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..++ .++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNK--HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTC--CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CCHHHHHHHHhccCccccc--ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 9999999999 56667776 5678999999999999999999999999 9999999999999999999988 999
Q ss_pred HHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337 (596)
Q Consensus 297 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 337 (596)
+++|+++|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus 161 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999886
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=7.8e-34 Score=275.64 Aligned_cols=217 Identities=25% Similarity=0.228 Sum_probs=153.8
Q ss_pred cCCCChHHHHHHHCCcHHHHHHHHhCCC----CccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHH
Q psy904 75 ERTKDTPLSLACSGGRYEVVELLLTRGA----NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL 150 (596)
Q Consensus 75 ~~~~~t~L~~A~~~g~~eivk~LL~~g~----~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L 150 (596)
+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++.... .|.|||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~L 82 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPL 82 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT--TCCCHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHH
Confidence 4556677777777777777777766544 4566666666666666666666666666666666555432 256666
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHH
Q psy904 151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230 (596)
Q Consensus 151 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~ 230 (596)
|+|+..|+.+++++|+..+.++... ..++..+..|.||||+|+..|+.++++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~ 134 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLH----------------------------SILKATNYNGHTCLHLASIHGYLGIVE 134 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSS----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcccchhHH----------------------------HHhhccCCCCCCHHHHHHHcCCHHHHH
Confidence 6666666666666666655432211 113556677888888888888888888
Q ss_pred HHHhCCCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcc-
Q psy904 231 VLLDKGADVNAPPVPS-SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID- 308 (596)
Q Consensus 231 ~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~- 308 (596)
+|++.|++++. .+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++.
T Consensus 135 ~Ll~~g~~~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 212 (236)
T 1ikn_D 135 LLVSLGADVNA--QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212 (236)
T ss_dssp HHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred HHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence 88888888876 344 78899999999999999999999999999999899999999999999999999999998765
Q ss_pred -cCCCCCCCHHHHHHH
Q psy904 309 -SQDNRKVSCLMAAFR 323 (596)
Q Consensus 309 -~~~~~g~t~L~~A~~ 323 (596)
..+..|.||++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 213 MLPESEDEESYDTESE 228 (236)
T ss_dssp SCCCCCTTTCCCCC--
T ss_pred cCCccchHHHHhhhcc
Confidence 777778887665543
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=5.8e-32 Score=247.81 Aligned_cols=158 Identities=37% Similarity=0.501 Sum_probs=143.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261 (596)
Q Consensus 182 t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~ 261 (596)
+.|+.||..|+.++|++|++.|++++.++..|.||||+|+..++.+++.+|++.|++++. .+..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~--~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh--hccCCCCHHHHHHHcCCH
Confidence 578899999999999999999999999999999999999999999999999999999887 567899999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341 (596)
Q Consensus 262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 341 (596)
++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+++.
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=1.1e-31 Score=259.54 Aligned_cols=208 Identities=25% Similarity=0.313 Sum_probs=157.7
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc----cccCCCChHHHH
Q psy904 10 NHDTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA----QSERTKDTPLSL 84 (596)
Q Consensus 10 ~g~t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~----~~~~~~~t~L~~ 84 (596)
.|.||||+||..|++++|++|++. |++++..|..|.||||+|+..|+.+++++|+++|+++.. ..+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 488999999999999999999998 999999999999999999999999999999999987642 234578899999
Q ss_pred HHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHH
Q psy904 85 ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164 (596)
Q Consensus 85 A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~ 164 (596)
|+..|+.+++++|+++|++++..+.... +. .. ....+..|.||||+|+..|+.+++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~~------------------~~--~~~~~~~g~t~L~~A~~~~~~~~v~~ 139 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--FH------------------YR--PHNLIYYGEHPLSFAACVGSEEIVRL 139 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--GS------------------CC--TTCSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--ee------------------ec--ccccccCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999999998887654211 00 00 11112236666666666666677777
Q ss_pred HHhcCCCcccccccCCCcHHHHHHHcCCHHHH----HHHHhcCCCc------ccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904 165 LLDMGSDINAQIETNRNTALTLACFQGRHEVV----SLLLDRKANV------EHRAKTGLTPLMEAASGGYVEVGRVLLD 234 (596)
Q Consensus 165 Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii----~~Ll~~g~~~------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 234 (596)
|+++|++++.. +..|.||||+|+..++.+++ ++|++.|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus 140 Ll~~ga~~~~~-d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 140 LIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHHTTCCTTCC-CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCCCCCCC-CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 76666666654 55666777777777776666 6777777666 4667777788888888888888888877
Q ss_pred CCCCCC
Q psy904 235 KGADVN 240 (596)
Q Consensus 235 ~g~~~~ 240 (596)
+|....
T Consensus 219 ~g~~~~ 224 (232)
T 2rfa_A 219 KRKHIA 224 (232)
T ss_dssp HHHHC-
T ss_pred cCccch
Confidence 766544
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=2.2e-32 Score=268.86 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=152.7
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHhcCCCccc---ccccCCCcHHHHHHHc---CCHHHHHHHHhcCCCccc-------
Q psy904 146 GISPLMLAAMNGHTA----AVKLLLDMGSDINA---QIETNRNTALTLACFQ---GRHEVVSLLLDRKANVEH------- 208 (596)
Q Consensus 146 g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~---~~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~------- 208 (596)
|.||||.|+..|+.+ ++++|+..|.+++. ..+..|.||||+|+.. |+.+++++|++.|++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 455666666666654 44455555555554 2245556666666666 666666666665555442
Q ss_pred ----ccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCC-----------CCCCcHHHHHHHcCcHHHHHHHHH---C
Q psy904 209 ----RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP-----------SSRDTALTIAADKGHCRFVELLLS---K 270 (596)
Q Consensus 209 ----~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-----------~~g~t~L~~A~~~~~~~iv~~Ll~---~ 270 (596)
.+..|.||||+|+..|+.+++++|+++|++++..... ..|.||||+|+..|+.+++++|++ +
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 2366888888888888888888888888888764321 139999999999999999999999 9
Q ss_pred CCCCCCCCCCCChHHHHHHh--cCcHH-------HHHHHHHCCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904 271 GAQVEVKNKKGNSPLWLAAN--GGHLS-------VVELLCKHGADI-------DSQDNRKVSCLMAAFRKGHVKAVRWMV 334 (596)
Q Consensus 271 g~di~~~d~~g~TpL~~A~~--~g~~~-------iv~~Ll~~gad~-------~~~~~~g~t~L~~A~~~g~~~iv~~Ll 334 (596)
|++++.+|..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999998 88888 999999999999 999999999999999999999999999
Q ss_pred hCcCC
Q psy904 335 NHVAQ 339 (596)
Q Consensus 335 ~~~~~ 339 (596)
++|+.
T Consensus 242 ~~g~~ 246 (256)
T 2etb_A 242 QREFS 246 (256)
T ss_dssp HHHHH
T ss_pred hCCCC
Confidence 99874
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=8.4e-33 Score=268.36 Aligned_cols=213 Identities=22% Similarity=0.233 Sum_probs=106.0
Q ss_pred cCCCCCcHHHHHHhcCcHHHHHHHHHCCC----CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHH
Q psy904 7 TESNHDTALTLACAGGHEELVELLLSRGA----DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPL 82 (596)
Q Consensus 7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~----~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L 82 (596)
.+.+|.||||+||..|+.++|++|++.+. +++..+..|.||||+|+..|+.++|++|+++|+++
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------ 71 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP------------ 71 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS------------
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence 34556666666666666666666655433 45555555555555555555555555555555544
Q ss_pred HHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccc----cCCCCCCCcHHHHHHHcCC
Q psy904 83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS----RTGSKLGISPLMLAAMNGH 158 (596)
Q Consensus 83 ~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~----~~~~~~g~t~L~~A~~~g~ 158 (596)
+..+..|.||||+|+..|+.+++++|+..+.+... ...+..|.||||+|+..|+
T Consensus 72 ----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 129 (236)
T 1ikn_D 72 ----------------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129 (236)
T ss_dssp ----------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred ----------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC
Confidence 44444444555555555555555555544433211 1111224444444444444
Q ss_pred HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904 159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK-TGLTPLMEAASGGYVEVGRVLLDKGA 237 (596)
Q Consensus 159 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~ 237 (596)
.+ ++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 130 ~~----------------------------------~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 175 (236)
T 1ikn_D 130 LG----------------------------------IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175 (236)
T ss_dssp HH----------------------------------HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred HH----------------------------------HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 44 44444444444444443 45555555555555555555555555
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCChHHHHHH
Q psy904 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE--VKNKKGNSPLWLAA 289 (596)
Q Consensus 238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~--~~d~~g~TpL~~A~ 289 (596)
+++. .+..|.||||+|+..|+.+++++|+++|+++. .++..|.||++.+.
T Consensus 176 ~~~~--~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 176 DVNR--VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp CSCC--CCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred CCCc--ccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence 5544 33455555555555555555555555555443 45555555554443
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.3e-30 Score=246.17 Aligned_cols=188 Identities=25% Similarity=0.356 Sum_probs=129.7
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCC-CccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904 112 YTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190 (596)
Q Consensus 112 ~t~L~~A~~~g~~eiv~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 190 (596)
.|||+.|+..|+.++++.|+..+. +++.... .|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT--EGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ 82 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence 344444444444444444443332 2222221 2444555555555555555555555544443 34455666666666
Q ss_pred CCHHHHHHHH-hcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCC-CCCCCCCCCCCCCcHHHHHHHcCc-----HHH
Q psy904 191 GRHEVVSLLL-DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG-ADVNAPPVPSSRDTALTIAADKGH-----CRF 263 (596)
Q Consensus 191 ~~~~ii~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~-----~~i 263 (596)
++.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.| ++++. .+..|.||||+|+..++ .++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF--QNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC--CCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--CCCCCCCHHHHHHHhccchhhHHHH
Confidence 6666666666 445577777778888888888888888888888887 77776 55788899999998887 899
Q ss_pred HHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 264 v~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
+++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 161 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999886
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=7e-31 Score=240.57 Aligned_cols=159 Identities=42% Similarity=0.582 Sum_probs=147.1
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227 (596)
Q Consensus 148 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 227 (596)
++|+.||..|+.++|++|++.|++++.. +..|.||||+|+..++.+++.+|++.|++++..+..|.||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 5799999999999999999999999886 778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307 (596)
Q Consensus 228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 307 (596)
++++|++.|++++. .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++||++
T Consensus 85 ~v~~Ll~~gadvn~--~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 85 VVKLLISKGADVNA--KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 99999999999988 5678999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy904 308 DS 309 (596)
Q Consensus 308 ~~ 309 (596)
+.
T Consensus 163 e~ 164 (169)
T 4gpm_A 163 EH 164 (169)
T ss_dssp --
T ss_pred CC
Confidence 74
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.6e-32 Score=267.71 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=99.6
Q ss_pred cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCC------------CCCCCCcHHHHHHHcCcHHHHHHHHH---CCCCC
Q psy904 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP------------VPSSRDTALTIAADKGHCRFVELLLS---KGAQV 274 (596)
Q Consensus 210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~------------~~~~g~t~L~~A~~~~~~~iv~~Ll~---~g~di 274 (596)
+..|.||||+|+..|+.+++++|+++|++++... .+..|.||||+|+..|+.+++++|++ +|+++
T Consensus 98 d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~ 177 (273)
T 2pnn_A 98 YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI 177 (273)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc
Confidence 3445555555555555555555555555554422 12368889999999889999999998 88899
Q ss_pred CCCCCCCChHHHHHHhcCc---------HHHHHHHHHCCCCcc-------cCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 275 EVKNKKGNSPLWLAANGGH---------LSVVELLCKHGADID-------SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 275 ~~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~~-------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
+.+|..|.||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..|+.++|++|+++|+
T Consensus 178 ~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 178 SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257 (273)
T ss_dssp TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence 8888889999999988887 788889999888886 478889999999999999999999999988
Q ss_pred CCCC
Q psy904 339 QFPS 342 (596)
Q Consensus 339 ~~~~ 342 (596)
.-|.
T Consensus 258 ~dp~ 261 (273)
T 2pnn_A 258 HEPE 261 (273)
T ss_dssp C---
T ss_pred CCch
Confidence 5443
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.8e-31 Score=264.97 Aligned_cols=216 Identities=24% Similarity=0.319 Sum_probs=173.4
Q ss_pred CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHh----CCCCcccc--CCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCC
Q psy904 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLT----HGAEINSR--TGSKLGISPLMLAAMN---GHTAAVKLLLDMGSD 171 (596)
Q Consensus 101 g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~----~g~~~~~~--~~~~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~ 171 (596)
++..+..+..|.||||.|+..|+.++|+.|++ .+.+++.. ..+..|.||||+|+.. |+.+++++|++.|++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 45667788999999999999999998888886 45555422 2245699999999987 999999999999865
Q ss_pred cc-------cc---cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccC--------------CCChHHHHHHhcCcHH
Q psy904 172 IN-------AQ---IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK--------------TGLTPLMEAASGGYVE 227 (596)
Q Consensus 172 ~~-------~~---~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~--------------~g~t~L~~A~~~g~~~ 227 (596)
+. .. .+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 32 11 245789999999999999999999999999999887 7999999999999999
Q ss_pred HHHHHHh---CCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCCC-------CCCCCCChHHHHH
Q psy904 228 VGRVLLD---KGADVNAPPVPSSRDTALTIAADKGH---------CRFVELLLSKGAQVE-------VKNKKGNSPLWLA 288 (596)
Q Consensus 228 iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~di~-------~~d~~g~TpL~~A 288 (596)
++++|++ .|++++. .+..|.||||+|+..|+ .+++++|+++|++++ ..|..|.||||+|
T Consensus 163 ~v~~Ll~~~~~gad~~~--~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISA--RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCcee--eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 9999999 8999987 56899999999999888 899999999999997 5899999999999
Q ss_pred HhcCcHHHHHHHHHCCC-CcccCCCCCCCHH
Q psy904 289 ANGGHLSVVELLCKHGA-DIDSQDNRKVSCL 318 (596)
Q Consensus 289 ~~~g~~~iv~~Ll~~ga-d~~~~~~~g~t~L 318 (596)
+..|+.++|++|+++|+ |+......+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHHHHTC-------------
T ss_pred HHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999999999 8887777666654
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.6e-31 Score=261.73 Aligned_cols=139 Identities=22% Similarity=0.213 Sum_probs=121.9
Q ss_pred CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC------------CCCCCcHHHHHHHcCcHHHHHHHHH---
Q psy904 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV------------PSSRDTALTIAADKGHCRFVELLLS--- 269 (596)
Q Consensus 205 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~------------~~~g~t~L~~A~~~~~~~iv~~Ll~--- 269 (596)
+++..+..|.||||+|+..|+.+++++|++.|++++.... +..|.||||+|+..|+.++|++|++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 164 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH 164 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 3444556888999999999999999999999888887431 1579999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHhcCc---------HHHHHHHHHCCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904 270 KGAQVEVKNKKGNSPLWLAANGGH---------LSVVELLCKHGADI-------DSQDNRKVSCLMAAFRKGHVKAVRWM 333 (596)
Q Consensus 270 ~g~di~~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~-------~~~~~~g~t~L~~A~~~g~~~iv~~L 333 (596)
+|++++.+|..|.||||+|+..++ .+++++|+++|+++ +..|..|.||||+|+..|+.++|++|
T Consensus 165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999998877 79999999999998 67999999999999999999999999
Q ss_pred HhCcCCCCCc
Q psy904 334 VNHVAQFPSD 343 (596)
Q Consensus 334 l~~~~~~~~~ 343 (596)
+++|+..+.+
T Consensus 245 l~~g~~~~~~ 254 (260)
T 3jxi_A 245 IRREIADAAA 254 (260)
T ss_dssp HHHHHHHHC-
T ss_pred HHhCCCcccc
Confidence 9999864443
No 53
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.5e-31 Score=261.23 Aligned_cols=209 Identities=24% Similarity=0.205 Sum_probs=158.6
Q ss_pred CCChHHHHHHHCCcHH----HHHHHHhCCCCccC----CCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCccccC----
Q psy904 77 TKDTPLSLACSGGRYE----VVELLLTRGANKEH----RNVSDYTPLSLAASG---GYVNIIKLLLTHGAEINSRT---- 141 (596)
Q Consensus 77 ~~~t~L~~A~~~g~~e----ivk~LL~~g~~~~~----~d~~g~t~L~~A~~~---g~~eiv~~Ll~~g~~~~~~~---- 141 (596)
+|.||||+|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. |+.+++++|++.|++++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3678899999988886 66777778888887 788888888888888 88888888888877655322
Q ss_pred -----CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChH
Q psy904 142 -----GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216 (596)
Q Consensus 142 -----~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~ 216 (596)
.+..|.||||+|+..|+.+++++|+++|++++.... .+.+ ..+.+..+..|.||
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~~~~--------------------~~~~~~~~~~g~tp 139 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC-GRFF--------------------QKHQGTCFYFGELP 139 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-SGGG--------------------SCCSSSCCCSCSSH
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc-cccc--------------------cccccccccCCCCH
Confidence 122355555555555555555555555555444311 1100 01122223349999
Q ss_pred HHHHHhcCcHHHHHHHHh---CCCCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHCCCCC-------CCC
Q psy904 217 LMEAASGGYVEVGRVLLD---KGADVNAPPVPSSRDTALTIAAD--KGHCR-------FVELLLSKGAQV-------EVK 277 (596)
Q Consensus 217 L~~A~~~g~~~iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~di-------~~~ 277 (596)
||+|+..|+.+++++|++ .|++++. .+..|.||||+|+. .++.+ ++++|+++|+++ +.+
T Consensus 140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~--~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 217 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCcCc--cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence 999999999999999999 8998887 56789999999998 78888 999999999999 899
Q ss_pred CCCCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904 278 NKKGNSPLWLAANGGHLSVVELLCKHGADID 308 (596)
Q Consensus 278 d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~ 308 (596)
|..|.||||+|+..|+.+++++|+++|+++.
T Consensus 218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 218 NHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 9999999999999999999999999987654
No 54
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=7.1e-33 Score=285.96 Aligned_cols=277 Identities=17% Similarity=0.132 Sum_probs=180.1
Q ss_pred cHHHHHHh-cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCChHHHHHHHCC
Q psy904 13 TALTLACA-GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA--QSERTKDTPLSLACSGG 89 (596)
Q Consensus 13 t~L~~A~~-~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~~A~~~g 89 (596)
++|++|+. .++.+++++|++.|++. .||||+|+..|+.++|++|+++|+.... ..+..+.||||+|+..|
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G 139 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC
Confidence 46677766 57788888888877654 3888888888888888888888773211 11234567888888888
Q ss_pred cHHHHHHHHhCCCCc---cCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHH-HcCCHHHHHHH
Q psy904 90 RYEVVELLLTRGANK---EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA-MNGHTAAVKLL 165 (596)
Q Consensus 90 ~~eivk~LL~~g~~~---~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~-~~g~~eiv~~L 165 (596)
+.++|++|+++|+++ +..+.+ .||||+|+..|+.++|++|+++|++++....+..|.||||+|+ .+|+.+++++|
T Consensus 140 ~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L 218 (376)
T 2aja_A 140 HLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218 (376)
T ss_dssp CHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 888888888888652 222222 7888888888888888888888887654111223778888888 88888888888
Q ss_pred HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHH------------HHHHH
Q psy904 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV------------GRVLL 233 (596)
Q Consensus 166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i------------v~~Ll 233 (596)
++.|. .+.|||+.|+.+|+.+++++|++.|++++..+ ++++.|+..|+.++ ++.|+
T Consensus 219 l~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li 286 (376)
T 2aja_A 219 LDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286 (376)
T ss_dssp TTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred HhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHH
Confidence 87653 25688888888888888888888887765543 35666776666553 33444
Q ss_pred hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC---------CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 234 DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK---------GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 234 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~---------g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
..+ ..+..+.+++|++. |+++ +.+.||||+|+..|+.++|++|++.|
T Consensus 287 ~~~--------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~ 342 (376)
T 2aja_A 287 RRN--------------------DEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP 342 (376)
T ss_dssp HHC--------------------CGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred Hcc--------------------hhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh
Confidence 432 11345677777763 4444 35679999999999999999999875
Q ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 305 ad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
..++..+.|++++|-..|+.++++.-+.+
T Consensus 343 ---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 343 ---SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp ---HHHHSCC----------------------
T ss_pred ---HHHHHHHHhccccccccccccHHHHHHHH
Confidence 56677899999999999999988765543
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=6.3e-30 Score=251.81 Aligned_cols=207 Identities=24% Similarity=0.257 Sum_probs=153.1
Q ss_pred CCCChHHHHHHHCCcHHH----HHHHHhCCCCccCCC----CCCCcHHHHHH---hcCCHHHHHHHHhCCCCccccCCCC
Q psy904 76 RTKDTPLSLACSGGRYEV----VELLLTRGANKEHRN----VSDYTPLSLAA---SGGYVNIIKLLLTHGAEINSRTGSK 144 (596)
Q Consensus 76 ~~~~t~L~~A~~~g~~ei----vk~LL~~g~~~~~~d----~~g~t~L~~A~---~~g~~eiv~~Ll~~g~~~~~~~~~~ 144 (596)
..+.++||.|+..|+.++ +++|+..|.+++..+ ..|.||||+|+ ..|+.+++++|++.|++.....
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--- 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--- 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence 456788888888888884 444444777776555 55778888777 5677777777777654321100
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--------------
Q psy904 145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRA-------------- 210 (596)
Q Consensus 145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~-------------- 210 (596)
.++ ...+.. .+..|.||||+|+..|+.+++++|++.|++++..+
T Consensus 80 -------------------~~~--~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 137 (260)
T 3jxi_A 80 -------------------EFI--NSPFRD-VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF 137 (260)
T ss_dssp -------------------HHH--TCCBCC-SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred -------------------hhh--cccccc-cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence 000 011111 12345566666666666666666666666666555
Q ss_pred CCCChHHHHHHhcCcHHHHHHHHh---CCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCC----
Q psy904 211 KTGLTPLMEAASGGYVEVGRVLLD---KGADVNAPPVPSSRDTALTIAADKGH---------CRFVELLLSKGAQV---- 274 (596)
Q Consensus 211 ~~g~t~L~~A~~~g~~~iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~di---- 274 (596)
..|.||||+|+..|+.+++++|++ .|++++. .+..|.||||+|+..++ .+++++|+++|+++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~--~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~ 215 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRR--QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc--cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence 679999999999999999999999 8888887 56789999999998777 78999999999998
Q ss_pred ---CCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCccc
Q psy904 275 ---EVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309 (596)
Q Consensus 275 ---~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~ 309 (596)
+..|..|.||||+|+..|+.++|++|+++|+++..
T Consensus 216 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 67999999999999999999999999999876543
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=7.8e-30 Score=253.62 Aligned_cols=189 Identities=25% Similarity=0.337 Sum_probs=171.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccCCCChHHHHHH--
Q psy904 147 ISPLMLAAMNGHTAAVKLLLDMGSD--INAQIETNRNTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEAA-- 221 (596)
Q Consensus 147 ~t~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~-~~~~~~~~g~t~L~~A~-- 221 (596)
.+++|.|+..|+.+.++.|+..+.+ ++.. +..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 4577888888888888888776544 3433 6788999999999999999999999998 99999999999999999
Q ss_pred ---hcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHH
Q psy904 222 ---SGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298 (596)
Q Consensus 222 ---~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~ 298 (596)
..++.+++++|+..|.+++. .+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.++|+
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINAK--ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 66889999999999977765 5578999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 299 LLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 299 ~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
+|++ .|++++.+|..|.|||++|+..|+.+++++|++++.
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 9999 899999999999999999999999999999998753
No 57
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.2e-28 Score=226.07 Aligned_cols=159 Identities=36% Similarity=0.495 Sum_probs=147.7
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 256 (596)
...+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999998887 5678999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus 89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy904 337 V 337 (596)
Q Consensus 337 ~ 337 (596)
|
T Consensus 169 G 169 (169)
T 2y1l_E 169 N 169 (169)
T ss_dssp -
T ss_pred C
Confidence 6
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.2e-28 Score=225.41 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=150.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258 (596)
Q Consensus 179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~ 258 (596)
.|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHc
Confidence 467899999999999999999999999999999999999999999999999999999999887 567899999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q psy904 339 Q 339 (596)
Q Consensus 339 ~ 339 (596)
.
T Consensus 160 ~ 160 (167)
T 3v31_A 160 K 160 (167)
T ss_dssp H
T ss_pred H
Confidence 4
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=7.4e-29 Score=232.48 Aligned_cols=159 Identities=26% Similarity=0.363 Sum_probs=150.6
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 256 (596)
+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSI 109 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999998887 5678999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus 110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy904 337 V 337 (596)
Q Consensus 337 ~ 337 (596)
+
T Consensus 190 ~ 190 (192)
T 2rfm_A 190 R 190 (192)
T ss_dssp H
T ss_pred c
Confidence 5
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.2e-28 Score=224.18 Aligned_cols=157 Identities=30% Similarity=0.350 Sum_probs=144.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259 (596)
Q Consensus 180 ~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~ 259 (596)
..||||.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++. .+..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcC
Confidence 4589999999999999999999999999999999999999999 999999999999998887 5678999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD-IDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.|||++|+..|+.+++++|+++|+
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999998 59999999999999999999999999999997
Q ss_pred C
Q psy904 339 Q 339 (596)
Q Consensus 339 ~ 339 (596)
+
T Consensus 162 d 162 (162)
T 1ihb_A 162 G 162 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 61
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.8e-28 Score=225.50 Aligned_cols=156 Identities=28% Similarity=0.428 Sum_probs=85.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCC-cccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904 182 TALTLACFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260 (596)
Q Consensus 182 t~L~~A~~~~~~~ii~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~ 260 (596)
+|||.|+..|+.+++++|+..+.+ ++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGY 81 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh--hcccCCCHHHHHHHCCC
Confidence 445555555555555555554444 444455555555555555555555555555555544 33445555555555555
Q ss_pred HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555543
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.7e-28 Score=224.30 Aligned_cols=170 Identities=25% Similarity=0.293 Sum_probs=153.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
+.+|||.|+..|+.+++++|+..+.......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 45899999999999999999999987444457889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 305 (596)
.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 82 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 82 TDIVGLLLERDVDINI--YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999999999887 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCH
Q psy904 306 DIDSQDNRKVSC 317 (596)
Q Consensus 306 d~~~~~~~g~t~ 317 (596)
++...+..|.||
T Consensus 160 ~~~~~~~~~~~p 171 (172)
T 3v30_A 160 KLFQSNLVPADP 171 (172)
T ss_dssp HHSCC-------
T ss_pred HHhcccCCCCCC
Confidence 999888888876
No 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.2e-31 Score=273.65 Aligned_cols=252 Identities=17% Similarity=0.176 Sum_probs=182.9
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCChHHH
Q psy904 9 SNHDTALTLACAGGHEELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA--QSERTKDTPLS 83 (596)
Q Consensus 9 ~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i---~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~ 83 (596)
.++.||||+||..|++++|++|++.|+.. +..+..|.||||+|+..|+.++|++|+++|+++.. ..... .||||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence 45679999999999999999999998832 23445678999999999999999999999976321 11112 79999
Q ss_pred HHHHCCcHHHHHHHHhCCCCccC--CCCCCCcHHHHHH-hcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904 84 LACSGGRYEVVELLLTRGANKEH--RNVSDYTPLSLAA-SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160 (596)
Q Consensus 84 ~A~~~g~~eivk~LL~~g~~~~~--~d~~g~t~L~~A~-~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e 160 (596)
+|+..|+.++|++|+++|++++. .+..|.||||+|+ ..|+.++|++|++.|.. |.|||++|+.+|+.+
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHHCTTTTTTTT
T ss_pred HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHHHHHHCCCHH
Confidence 99999999999999999999877 8888999999999 99999999999997632 679999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHH------------HHHHhcCCCcccccCCCChHHHHHHhcCcHHH
Q psy904 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV------------SLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228 (596)
Q Consensus 161 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii------------~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i 228 (596)
++++|++.|++++.. .++++.|+.+|+.+++ +.|+..+ ..+..+.
T Consensus 240 vv~lL~~~ga~~~~~-----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~------------------~~~~~~~ 296 (376)
T 2aja_A 240 VNPFIARHVNRLKEM-----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN------------------DEVLLDD 296 (376)
T ss_dssp HHHHHHHHHHHHHHH-----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC------------------CGGGHHH
T ss_pred HHHHHHhcCcccccc-----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc------------------hhhHHHH
Confidence 999999998876543 2467777777776633 3344332 1133566
Q ss_pred HHHHHhC---------CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHH
Q psy904 229 GRVLLDK---------GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299 (596)
Q Consensus 229 v~~Ll~~---------g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~ 299 (596)
+++|++. |+++ ..+.||||+|+..|+.+++++|++.| ..++..|.|++.+|-..|..+++++
T Consensus 297 ~~~Ll~~~~vk~l~~~g~~~------n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 297 IRFLLSIPGIKALAPTATIP------GDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp HHHHHTSTTTGGGSSCCSST------TCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------------------
T ss_pred HHHHHhChhhhhhhccCCCC------CCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHH
Confidence 6777763 3333 34669999999999999999999975 5677889999999999999999886
Q ss_pred HHH
Q psy904 300 LCK 302 (596)
Q Consensus 300 Ll~ 302 (596)
-+.
T Consensus 368 ~~~ 370 (376)
T 2aja_A 368 ALE 370 (376)
T ss_dssp ---
T ss_pred HHH
Confidence 554
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=9.6e-28 Score=216.23 Aligned_cols=150 Identities=30% Similarity=0.375 Sum_probs=136.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~ 260 (596)
.++|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCh
Confidence 378888888889999999988888776 477889999999999999999999999988876 55788999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333 (596)
Q Consensus 261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~L 333 (596)
.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=242.43 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=163.8
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHH--
Q psy904 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLAC-- 188 (596)
Q Consensus 112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~-- 188 (596)
.+++|.|+..|++..++.++..+.+......+..|.||||+|+..|+.+++++|++.|+ +++.. +..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHH
Confidence 45677788888888887777665553333344558888888888888888888888887 55554 677888999888
Q ss_pred ---HcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q psy904 189 ---FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265 (596)
Q Consensus 189 ---~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~ 265 (596)
..++.+++.+|+..|..++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~--~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV--QDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHHCCCHHHHH
Confidence 56888999999999999988899999999999999999999999999999988 5679999999999999999999
Q ss_pred HHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 266 LLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 266 ~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
+|++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999 89999999999999999999999999999999864
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.8e-27 Score=216.34 Aligned_cols=157 Identities=33% Similarity=0.410 Sum_probs=144.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
..|||+.|+..|+.+++++|++.|++++.. +..|.||||+|+. ++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 458999999999999999999999888765 6778899999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC-CCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d-i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|
T Consensus 83 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999999887 567899999999999999999999999998 6999999999999999999999999999999
Q ss_pred CC
Q psy904 305 AD 306 (596)
Q Consensus 305 ad 306 (596)
||
T Consensus 161 Ad 162 (162)
T 1ihb_A 161 AG 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 86
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=9.7e-28 Score=219.00 Aligned_cols=158 Identities=29% Similarity=0.295 Sum_probs=137.8
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904 178 TNRNTALTLACFQGRHEVVSLLLD-RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256 (596)
Q Consensus 178 ~~~~t~L~~A~~~~~~~ii~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 256 (596)
..+.++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~ 83 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNAC 83 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--cCCCCCCHHHHHH
Confidence 445688888888888888888887 4556677778888999999999999999999999988877 5578889999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|.. |+.+++++|+++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999766 889999999988
Q ss_pred cC
Q psy904 337 VA 338 (596)
Q Consensus 337 ~~ 338 (596)
|+
T Consensus 163 gA 164 (165)
T 3twr_A 163 AA 164 (165)
T ss_dssp --
T ss_pred cc
Confidence 75
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=5.8e-27 Score=214.84 Aligned_cols=156 Identities=37% Similarity=0.506 Sum_probs=146.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
+.++|+.|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 92 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 568999999999999999999999988875 6788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 93 ~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 93 LEIVEVLLKNGADVNA--NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999887 5678999999999999999999999999999999999999999999999999999999876
No 69
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=2.1e-27 Score=222.60 Aligned_cols=158 Identities=28% Similarity=0.376 Sum_probs=141.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc
Q psy904 144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223 (596)
Q Consensus 144 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 223 (596)
..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 111 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence 34778888888888888888888888777665 56788899999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303 (596)
Q Consensus 224 g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 303 (596)
|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 112 ~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 112 GYSEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp TCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 999999999999999887 567899999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy904 304 G 304 (596)
Q Consensus 304 g 304 (596)
|
T Consensus 190 ~ 190 (192)
T 2rfm_A 190 R 190 (192)
T ss_dssp H
T ss_pred c
Confidence 4
No 70
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.8e-27 Score=220.39 Aligned_cols=159 Identities=25% Similarity=0.284 Sum_probs=96.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904 181 NTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~ 259 (596)
.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAASHG 83 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcC
Confidence 3555555555555555555555 444555555666666666666666666666666655554 3345566666666666
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++..++++|+++|++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q psy904 340 FP 341 (596)
Q Consensus 340 ~~ 341 (596)
+.
T Consensus 164 ~~ 165 (179)
T 3f6q_A 164 LN 165 (179)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 71
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.2e-27 Score=217.04 Aligned_cols=159 Identities=26% Similarity=0.314 Sum_probs=146.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
|.||||.|+..|+.+++++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 678999999999999999999988887765 6678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 305 (596)
.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++++
T Consensus 82 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNE--YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 9999999999999887 56789999999999999999999999999999999999999999999999999999999876
Q ss_pred Cc
Q psy904 306 DI 307 (596)
Q Consensus 306 d~ 307 (596)
++
T Consensus 160 ~~ 161 (167)
T 3v31_A 160 KL 161 (167)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=5e-27 Score=217.43 Aligned_cols=166 Identities=29% Similarity=0.329 Sum_probs=151.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 224 (596)
+.++|+.|+..|+.+++++|++.+. +++. .+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 6688999999999999999998844 4444 4778899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|
T Consensus 84 ~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp CHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999987 5688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCC
Q psy904 305 ADIDSQDNRK 314 (596)
Q Consensus 305 ad~~~~~~~g 314 (596)
++++..+..+
T Consensus 162 ~~~~~~~~~~ 171 (179)
T 3f6q_A 162 QNLNRIPYKD 171 (179)
T ss_dssp CCCSCBCCCC
T ss_pred cCcccCCccc
Confidence 9998876544
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=7.9e-27 Score=210.77 Aligned_cols=152 Identities=28% Similarity=0.371 Sum_probs=141.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904 181 NTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~ 259 (596)
.|+||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++. .+..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV--QDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcC
Confidence 4889999999999999999988 44888889999999999 999999999999999999887 5678999999999999
Q ss_pred cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++ ++++..|..|.|||++|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999975
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.3e-30 Score=247.34 Aligned_cols=209 Identities=20% Similarity=0.163 Sum_probs=169.7
Q ss_pred HHHHhCCCCccccC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q psy904 128 KLLLTHGAEINSRT-GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206 (596)
Q Consensus 128 ~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~ 206 (596)
+.|+..|++++... .+..+.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|++.|+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 44555555554322 2333668889999999999999999988888775 678889999999999999999999999999
Q ss_pred ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHH--HHcCcHHHHHHHHHCCCCCCCCCCCCChH
Q psy904 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA--ADKGHCRFVELLLSKGAQVEVKNKKGNSP 284 (596)
Q Consensus 207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A--~~~~~~~iv~~Ll~~g~di~~~d~~g~Tp 284 (596)
+..+..|.||||+|+..|+.+++++|++.|++++.. .+..|.||||+| +..|+.+++++|+++|++++..|..|.||
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~ 159 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT-TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence 999999999999999999999999999999998873 235899999999 99999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHCCCC--cccCCCCCCCHHHHHHHcCCHHHHHH-HHhCcCCCC
Q psy904 285 LWLAANGGHLSVVELLCKHGAD--IDSQDNRKVSCLMAAFRKGHVKAVRW-MVNHVAQFP 341 (596)
Q Consensus 285 L~~A~~~g~~~iv~~Ll~~gad--~~~~~~~g~t~L~~A~~~g~~~iv~~-Ll~~~~~~~ 341 (596)
|+.++..+. +++|+..|++ ++.+|..|.|||++|+..|+.++|+. +++..+.+.
T Consensus 160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~ 216 (229)
T 2vge_A 160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216 (229)
T ss_dssp SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC
T ss_pred HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCC
Confidence 996655543 3678889988 77889999999999999999999865 444444433
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.8e-26 Score=206.59 Aligned_cols=150 Identities=31% Similarity=0.400 Sum_probs=140.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH
Q psy904 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226 (596)
Q Consensus 147 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~ 226 (596)
.++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 478999999999999999999988765 367788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHH
Q psy904 227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300 (596)
Q Consensus 227 ~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~L 300 (596)
+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999887 567899999999999999999999999999999999999999999999999999987
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.3e-26 Score=211.54 Aligned_cols=158 Identities=36% Similarity=0.416 Sum_probs=141.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904 145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224 (596)
Q Consensus 145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 224 (596)
.+.++|+.|+..|+.+++++|+..+.......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 36788999999999999999988544333334667789999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|
T Consensus 87 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 87 HYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp CHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cHHHHHHHHhCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 99999999999999987 56789999999999999999999999999999999999999999877 8999999999988
Q ss_pred C
Q psy904 305 A 305 (596)
Q Consensus 305 a 305 (596)
+
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 6
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2.8e-27 Score=230.02 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=132.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 225 (596)
|.||||.|+..|+.++++.|+++|++++.. ..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 778888888888888888888888887753 567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC-hHHHHH--HhcCcHHHHHHHHH
Q psy904 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLA--ANGGHLSVVELLCK 302 (596)
Q Consensus 226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~ 302 (596)
.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+| +..|+.+++++|+.
T Consensus 83 ~~~v~~Ll~~ga~~~~--~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 83 TEIVKFLVQFGVNVNA--ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp HHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 9999999999998887 567899999999999999999999999999999988877 999999 78899999999999
Q ss_pred CCCCcccC---------CCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904 303 HGADIDSQ---------DNRKVSCLMAAFRKGHVKAVRWMVNHV 337 (596)
Q Consensus 303 ~gad~~~~---------~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 337 (596)
+|++++.. +..+.+++++++..|. ++..|...+
T Consensus 161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~ 202 (239)
T 1ycs_B 161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED 202 (239)
T ss_dssp HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred hhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence 99887765 5667888888877776 344444443
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=4.4e-29 Score=240.89 Aligned_cols=180 Identities=24% Similarity=0.242 Sum_probs=82.0
Q ss_pred hHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCH
Q psy904 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159 (596)
Q Consensus 80 t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~ 159 (596)
||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~--~g~tpLh~A~~~g~~ 100 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS--HGWTPLHCAASCNDT 100 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCH
Confidence 444444444444444444444444444444444444444444444444444444443333222 133444444444444
Q ss_pred HHHHHHHhcCCCcccccccCCCcHHHHH--HHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904 160 AAVKLLLDMGSDINAQIETNRNTALTLA--CFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237 (596)
Q Consensus 160 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 237 (596)
+++++|++.|++++...+..|.||||+| +..++.+++++|++.|++++..+..|.+|+
T Consensus 101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l-------------------- 160 (229)
T 2vge_A 101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL-------------------- 160 (229)
T ss_dssp HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES--------------------
T ss_pred HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH--------------------
Confidence 4444444444433333222333444444 344444444444444444444333333333
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC--CCCCCCCCChHHHHHHhcCcHHHHHH
Q psy904 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ--VEVKNKKGNSPLWLAANGGHLSVVEL 299 (596)
Q Consensus 238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d--i~~~d~~g~TpL~~A~~~g~~~iv~~ 299 (596)
+.++.... +++|+..|++ ++.+|..|.||||+|+..|+.++|+.
T Consensus 161 ---------------~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 161 ---------------WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp ---------------SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred ---------------HHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 32222211 1355566666 55667777777777777777777764
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.1e-25 Score=201.34 Aligned_cols=153 Identities=27% Similarity=0.395 Sum_probs=138.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDM-GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 224 (596)
+.|+|+.|+..|+.+++++|++. +.+++.. +..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 45789999999999999999988 2255554 6778899999 9999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303 (596)
Q Consensus 225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 303 (596)
+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++ ++++..|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNV--PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999887 567899999999999999999999999 99999999999999999999999999999874
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.5e-26 Score=224.72 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=121.7
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD 257 (596)
Q Consensus 178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~ 257 (596)
..|.||||.|+..++.+++..|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++. .+..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVC 79 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC--CCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHH
Confidence 45789999999999999999999999999864 7789999999999999999999999998887 56889999999999
Q ss_pred cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCC-CHHHHH--HHcCCHHHHHHHH
Q psy904 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV-SCLMAA--FRKGHVKAVRWMV 334 (596)
Q Consensus 258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~-t~L~~A--~~~g~~~iv~~Ll 334 (596)
.|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++..+..|. |||++| +..|+.+++++|+
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll 159 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887 999999 7889999999999
Q ss_pred hCcCCCCC
Q psy904 335 NHVAQFPS 342 (596)
Q Consensus 335 ~~~~~~~~ 342 (596)
.+|+++..
T Consensus 160 ~~~a~~~~ 167 (239)
T 1ycs_B 160 GVQEKMGI 167 (239)
T ss_dssp HHHHHTTT
T ss_pred Hhhhcccc
Confidence 99886554
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=8e-26 Score=199.34 Aligned_cols=134 Identities=26% Similarity=0.311 Sum_probs=126.9
Q ss_pred CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC-C
Q psy904 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK-G 281 (596)
Q Consensus 203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~-g 281 (596)
+++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+. ++.+++++|+++|++++..|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA--LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence 567888899999999999999999999999999999887 56789999999999 9999999999999999999999 9
Q ss_pred ChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 282 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999874
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=3.8e-25 Score=205.81 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=128.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCccccc-CCCChHHHHHHhcCcH----HHHHHHHhCCCCCCCCCCCCCCCcHHHHH
Q psy904 181 NTALTLACFQGRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYV----EVGRVLLDKGADVNAPPVPSSRDTALTIA 255 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A 255 (596)
.++|+.|+..|+.+.+..++..+.+ ..+ ..|.||||+|+..|+. +++++|+++|+++|. .+..|.||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC--CCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC--CCCCCCcHHHHH
Confidence 4677888888888888777776543 334 6688888888888864 488889999988887 457888999998
Q ss_pred HHcCc------HHHHHHHHHCCCCCCCCCCCCC-hHHHHHHhcC-----cHHHHHHHHH-CCCCcccCCCCCCCHHHHHH
Q psy904 256 ADKGH------CRFVELLLSKGAQVEVKNKKGN-SPLWLAANGG-----HLSVVELLCK-HGADIDSQDNRKVSCLMAAF 322 (596)
Q Consensus 256 ~~~~~------~~iv~~Ll~~g~di~~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~ 322 (596)
+..++ .+++++|+++|+|+|.+|..|. ||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 88876 6789999999999999999999 9999999844 4579999999 99999999999999999999
Q ss_pred HcCCHHHHHHHHhCc
Q psy904 323 RKGHVKAVRWMVNHV 337 (596)
Q Consensus 323 ~~g~~~iv~~Ll~~~ 337 (596)
..|+..+|++|++..
T Consensus 163 ~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 163 RCQKPIALKMMEDYI 177 (186)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999998754
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=5.1e-25 Score=199.08 Aligned_cols=142 Identities=25% Similarity=0.288 Sum_probs=108.9
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCc-HHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT-ALTIA 255 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t-~L~~A 255 (596)
+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|++.|++++. .+..|.| |||+|
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~--~d~~g~ttpL~~A 85 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC--ADPATLTRPVHDA 85 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC--CCTTTCCCHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHH
Confidence 456678888888888888888888888888888888999999885 8889999999999888877 5567888 99999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321 (596)
Q Consensus 256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A 321 (596)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus 86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999888888887643
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=7.2e-24 Score=183.43 Aligned_cols=126 Identities=44% Similarity=0.648 Sum_probs=106.1
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291 (596)
Q Consensus 212 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~ 291 (596)
+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence 367888888888888888888888877766 456788888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 292 GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 292 g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 888888888888888888888888888888888888888888888864
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=2.1e-24 Score=190.23 Aligned_cols=133 Identities=25% Similarity=0.326 Sum_probs=121.4
Q ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC-C
Q psy904 170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS-R 248 (596)
Q Consensus 170 ~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~-g 248 (596)
++++.. +..+.||||.|+..++.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++. .+.. |
T Consensus 3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~~g 78 (136)
T 1d9s_A 3 PGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC--ADPATL 78 (136)
T ss_dssp CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC--CBTTTT
T ss_pred CCccCC-CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC--cCCCCC
Confidence 344443 5678899999999999999999999999999999999999999999 999999999999999887 5567 8
Q ss_pred CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306 (596)
Q Consensus 249 ~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad 306 (596)
.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=6.9e-24 Score=186.88 Aligned_cols=126 Identities=35% Similarity=0.449 Sum_probs=108.7
Q ss_pred cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy904 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289 (596)
Q Consensus 210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~ 289 (596)
...+.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34567888888888888888888888888776 5577889999999999999999999999999888888999999999
Q ss_pred hcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337 (596)
Q Consensus 290 ~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 337 (596)
..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999988888999999999999999999988875
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.1e-24 Score=202.74 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=139.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCChHHHHHH
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH----EVVSLLLDRKANVEHRAKTGLTPLMEAA 221 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~----~ii~~Ll~~g~~~~~~~~~g~t~L~~A~ 221 (596)
++++|+.|+..|+.+.+..++..+.+. ..+..|.||||+|+.+++. +++++|++.|++++..+..|.||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 457889999999999998888877543 3236688999999999875 4899999999999999999999999999
Q ss_pred hcCc------HHHHHHHHhCCCCCCCCCCCCCCC-cHHHHHHHcC-----cHHHHHHHHH-CCCCCCCCCCCCChHHHHH
Q psy904 222 SGGY------VEVGRVLLDKGADVNAPPVPSSRD-TALTIAADKG-----HCRFVELLLS-KGAQVEVKNKKGNSPLWLA 288 (596)
Q Consensus 222 ~~g~------~~iv~~Ll~~g~~~~~~~~~~~g~-t~L~~A~~~~-----~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A 288 (596)
..|+ .+++++|+++|++++. .+..|. ||||+|+..+ ..+++++|++ +|+|++.+|..|.||||+|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~--~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITA--LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSS--CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCc--cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 9886 6889999999999998 567899 9999999944 4579999999 9999999999999999999
Q ss_pred HhcCcHHHHHHHHHCCCCcccCC
Q psy904 289 ANGGHLSVVELLCKHGADIDSQD 311 (596)
Q Consensus 289 ~~~g~~~iv~~Ll~~gad~~~~~ 311 (596)
+..|+.++|++|+++....+..+
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCHHHHHHHHHHHHHHhccc
Confidence 99999999999998765554443
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=4.6e-24 Score=192.77 Aligned_cols=134 Identities=27% Similarity=0.304 Sum_probs=120.0
Q ss_pred ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCh-HH
Q psy904 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS-PL 285 (596)
Q Consensus 207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~T-pL 285 (596)
...+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+ .|+.+++++|+++|++++.+|..|.| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 34567889999999999999999999999999887 5678999999986 89999999999999999999999999 99
Q ss_pred HHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD 343 (596)
Q Consensus 286 ~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 343 (596)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~ 140 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999986554
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=4.5e-23 Score=178.37 Aligned_cols=126 Identities=49% Similarity=0.674 Sum_probs=118.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258 (596)
Q Consensus 179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~ 258 (596)
+|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc--cCCCCCcHHHHHHHc
Confidence 367999999999999999999999999999999999999999999999999999999998887 557899999999999
Q ss_pred CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306 (596)
Q Consensus 259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad 306 (596)
++.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+|
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999986
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=4e-24 Score=188.59 Aligned_cols=133 Identities=26% Similarity=0.254 Sum_probs=112.1
Q ss_pred CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy904 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282 (596)
Q Consensus 203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~ 282 (596)
|+++ .++..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCC
Confidence 4566 5678889999999999999999999999988876 557888999999999999999999999999999999999
Q ss_pred hHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904 283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338 (596)
Q Consensus 283 TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 338 (596)
||||+|+..|+.+++++|+++|++++..|..|.|||++|+..+..+++.+|..++.
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999988888888887776654
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=5.1e-23 Score=181.27 Aligned_cols=126 Identities=34% Similarity=0.469 Sum_probs=117.6
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 256 (596)
...+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA--VDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999887 5678999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304 (596)
Q Consensus 257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 304 (596)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999986
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.4e-22 Score=178.69 Aligned_cols=130 Identities=32% Similarity=0.472 Sum_probs=117.7
Q ss_pred CCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHH
Q psy904 4 DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS 83 (596)
Q Consensus 4 ~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~ 83 (596)
|...+.+|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||
T Consensus 3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~ 81 (137)
T 3c5r_A 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLH 81 (137)
T ss_dssp -CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHH
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999988764 567899999
Q ss_pred HHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCC
Q psy904 84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134 (596)
Q Consensus 84 ~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g 134 (596)
+|+..|+.+++++|+++|++++..|..|.|||++|+..+..+++.+|...+
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 999999999999999999999999999999999999999998888877654
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=3.6e-22 Score=172.50 Aligned_cols=112 Identities=29% Similarity=0.361 Sum_probs=98.2
Q ss_pred cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy904 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289 (596)
Q Consensus 210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~ 289 (596)
+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 45677899999999999999999999888776 5678889999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323 (596)
Q Consensus 290 ~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~ 323 (596)
..|+.+++++|+++|++++.+|..|.|||++|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9999999999999999999999999999999843
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.4e-22 Score=195.69 Aligned_cols=144 Identities=27% Similarity=0.276 Sum_probs=130.8
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87 (596)
Q Consensus 8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 87 (596)
++.|.||||+||..|+.++|++|++ |++++..|..|.||||+|+..|+.++|++|+++|++++...+..|.||||+|+.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 3578899999999999999999999 999999999999999999999999999999999999988776889999999999
Q ss_pred CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167 (596)
Q Consensus 88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~ 167 (596)
.|+.++|++|+++|++++..+..|.||||+|+..++. ..+.+||++|+..|+.+++++|+.
T Consensus 121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 9999999999999999999999999999999863221 226799999999999999999998
Q ss_pred cCCC
Q psy904 168 MGSD 171 (596)
Q Consensus 168 ~~~~ 171 (596)
.+.+
T Consensus 182 ~~~~ 185 (244)
T 3ui2_A 182 QVFE 185 (244)
T ss_dssp HHEE
T ss_pred hccc
Confidence 6543
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.6e-22 Score=186.37 Aligned_cols=141 Identities=28% Similarity=0.290 Sum_probs=129.5
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87 (596)
Q Consensus 8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 87 (596)
+..|.||||+||..|++++|++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4578899999999999999999999 999999999999999999999999999999999999988766889999999999
Q ss_pred CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167 (596)
Q Consensus 88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~ 167 (596)
.|+.+++++|+++|++++..|..|.||||+|+..++. ..+.++|++|+..|+.+++++|.+
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999999874432 125689999999999999999976
Q ss_pred c
Q psy904 168 M 168 (596)
Q Consensus 168 ~ 168 (596)
+
T Consensus 181 ~ 181 (183)
T 3deo_A 181 Q 181 (183)
T ss_dssp C
T ss_pred h
Confidence 4
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=4.6e-22 Score=184.67 Aligned_cols=140 Identities=26% Similarity=0.250 Sum_probs=127.0
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD 257 (596)
Q Consensus 178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~ 257 (596)
..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++... +..|.||||+|+.
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~~A~~ 119 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-SSSSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHHh
Confidence 456799999999999999999999 99999999999999999999999999999999999988732 2679999999999
Q ss_pred cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336 (596)
Q Consensus 258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ 336 (596)
.|+.+++++|+++|++++.+|..|.||||+|+..++. ..+.++|++|+..|+.+++++|.++
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999874332 4567999999999999999999875
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=5.8e-22 Score=192.94 Aligned_cols=143 Identities=26% Similarity=0.254 Sum_probs=128.4
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD 257 (596)
Q Consensus 178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~ 257 (596)
..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++... +..|.||||+|+.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC-SSSCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHHH
Confidence 456799999999999999999999 99999999999999999999999999999999999998732 2679999999999
Q ss_pred cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337 (596)
Q Consensus 258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 337 (596)
.|+.+++++|+++|++++.+|..|.||||+|+..++ ...+.|||++|+..|+.+++++|+.++
T Consensus 121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 999999999999999999999999999999985221 256889999999999999999999874
Q ss_pred CC
Q psy904 338 AQ 339 (596)
Q Consensus 338 ~~ 339 (596)
.+
T Consensus 184 ~~ 185 (244)
T 3ui2_A 184 FE 185 (244)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 98
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=2.3e-21 Score=192.34 Aligned_cols=128 Identities=18% Similarity=0.183 Sum_probs=114.7
Q ss_pred ChHHHHHHhcCcHHHHHHHHhCCCCCCC----CCCCCCCCcHHHHHHHc---CcHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy904 214 LTPLMEAASGGYVEVGRVLLDKGADVNA----PPVPSSRDTALTIAADK---GHCRFVELLLSKGAQVEVKNKKGNSPLW 286 (596)
Q Consensus 214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~----~~~~~~g~t~L~~A~~~---~~~~iv~~Ll~~g~di~~~d~~g~TpL~ 286 (596)
.++|+.|+..|+...+..++..|++++. ...+..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 4678888888888888888888888652 23467799999999998 8999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904 287 LAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341 (596)
Q Consensus 287 ~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 341 (596)
+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+...
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999998643
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=198.14 Aligned_cols=139 Identities=19% Similarity=0.099 Sum_probs=112.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCccc------ccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcH
Q psy904 181 NTALTLACFQGRHEVVSLLLDRKANVEH------RAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPPVPSSRDTA 251 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~ 251 (596)
.++|+.|+..++.+++..|+..|++++. .+..|.||||+|+.. |+.+++++|+++|++++. .+..|.||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~--~d~~G~Tp 229 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTA 229 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC--CCTTCCCH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC--CCCCCCCH
Confidence 3678888888888888888888888876 577888999999886 788899999998888877 55788899
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCH
Q psy904 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327 (596)
Q Consensus 252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~ 327 (596)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999988876 478899999887753
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.5e-22 Score=190.14 Aligned_cols=130 Identities=28% Similarity=0.292 Sum_probs=91.6
Q ss_pred cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCChHHHHH
Q psy904 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLA 288 (596)
Q Consensus 210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~di~~~d~~g~TpL~~A 288 (596)
+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.++|++|+++ |++++..|..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG--LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 45566777777777777777777777777665 446677777777777777777777777 777777777777777777
Q ss_pred HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904 289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341 (596)
Q Consensus 289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 341 (596)
+..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|+.+++...
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 77777777777777777777777777777777777777777777777776543
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=1.3e-21 Score=187.55 Aligned_cols=136 Identities=26% Similarity=0.285 Sum_probs=115.0
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcHHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIA 255 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~g~t~L~~A 255 (596)
+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++. .+..|.||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~--~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ--QNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC--CCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc--cCCCCCCHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998 999887 568899999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCC
Q psy904 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314 (596)
Q Consensus 256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g 314 (596)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|+..|++.+..+..+
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99999999999999999999999999999999999999999999999999887776544
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=188.88 Aligned_cols=141 Identities=24% Similarity=0.178 Sum_probs=124.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccc-----cccCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCChHH
Q psy904 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQ-----IETNRNTALTLACFQ---GRHEVVSLLLDRKANVEHRAKTGLTPL 217 (596)
Q Consensus 146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~-----~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~~~~~g~t~L 217 (596)
..++|+.|+..|+.+.+.+|+..|++++.. .+..|.||||+|+.. ++.+++++|+++|++++..+..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 447899999999999999999999998874 367889999999997 899999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904 218 MEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294 (596)
Q Consensus 218 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~ 294 (596)
|+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~--~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGT--VNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSC--CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999987 668899999999999999999999999876 488999999998864
No 103
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=4.9e-21 Score=165.29 Aligned_cols=118 Identities=31% Similarity=0.334 Sum_probs=105.9
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256 (596)
Q Consensus 177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~ 256 (596)
+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA--PDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999887 5678999999999
Q ss_pred HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHH
Q psy904 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296 (596)
Q Consensus 257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~i 296 (596)
..++.+++++|+++|++++..|..|.||||+|+..+..++
T Consensus 82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 9999999999999999999999999999999965444444
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=4.9e-20 Score=182.73 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=114.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCc------ccccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcH
Q psy904 181 NTALTLACFQGRHEVVSLLLDRKANV------EHRAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPPVPSSRDTA 251 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~------~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~ 251 (596)
.++|+.|+..++.+.+..++..|+++ +..+..|.||||+|+.. |+.+++++|+++|++++. .+..|.||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~--~d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--QTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--CCTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc--cCCCCCCH
Confidence 36888899999999999899888884 44478899999999999 899999999999999987 56789999
Q ss_pred HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307 (596)
Q Consensus 252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 307 (596)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999998864
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.6e-20 Score=153.43 Aligned_cols=93 Identities=42% Similarity=0.643 Sum_probs=81.7
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCC
Q psy904 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326 (596)
Q Consensus 247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~ 326 (596)
+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36789999999999999999999999999999899999999999999999999999999999889899999999999999
Q ss_pred HHHHHHHHhCcCC
Q psy904 327 VKAVRWMVNHVAQ 339 (596)
Q Consensus 327 ~~iv~~Ll~~~~~ 339 (596)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988864
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=4.1e-20 Score=189.86 Aligned_cols=130 Identities=25% Similarity=0.235 Sum_probs=118.4
Q ss_pred cCCCChHHHHHHhc-CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904 210 AKTGLTPLMEAASG-GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288 (596)
Q Consensus 210 ~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A 288 (596)
...+.|+||.|+.. |+++++++|+..|++++....+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34556899999999 99999999999999998855447899999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904 289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339 (596)
Q Consensus 289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 339 (596)
+..|+.++|++|+++|++++..|..|.|||++|+..|+.+++++|+..+..
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999988753
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=5.6e-20 Score=197.93 Aligned_cols=130 Identities=20% Similarity=0.118 Sum_probs=101.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccc------cCCCChHHHHHHh---cCcHHHHHHHHhCCCCCCCCCCCCCCCcHH
Q psy904 182 TALTLACFQGRHEVVSLLLDRKANVEHR------AKTGLTPLMEAAS---GGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252 (596)
Q Consensus 182 t~L~~A~~~~~~~ii~~Ll~~g~~~~~~------~~~g~t~L~~A~~---~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L 252 (596)
+.||.|+..|+.+++..|+..|++++.. +..|.||||+|+. .|+.+++++|+++|+++|. .+..|.|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~--~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTC--CCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCc--cCCCCCcHH
Confidence 5688888888888888888888887766 6778888888865 7888888888888888877 456788888
Q ss_pred HHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCC
Q psy904 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR 313 (596)
Q Consensus 253 ~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~ 313 (596)
|+|+..|+.++|++|+++|+|++..|..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 8888888888888888888888888888888888888888888888888888888764433
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=8.4e-20 Score=196.56 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=118.9
Q ss_pred ChHHHHHHhcCcHHHHHHHHhCCCCCCCC----CCCCCCCcHHHHHHH---cCcHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy904 214 LTPLMEAASGGYVEVGRVLLDKGADVNAP----PVPSSRDTALTIAAD---KGHCRFVELLLSKGAQVEVKNKKGNSPLW 286 (596)
Q Consensus 214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~----~~~~~g~t~L~~A~~---~~~~~iv~~Ll~~g~di~~~d~~g~TpL~ 286 (596)
.+.||.|+..|+.++++.|+..|++++.. ..+..|.||||+||. .|+.++|++|+++|+|+|.+|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 37899999999999999999999998864 226789999999976 89999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904 287 LAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS 342 (596)
Q Consensus 287 ~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 342 (596)
+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999998665
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=7.6e-20 Score=187.83 Aligned_cols=144 Identities=23% Similarity=0.256 Sum_probs=118.3
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHhcCCCccccc--CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHH
Q psy904 179 NRNTALTLACFQ-GRHEVVSLLLDRKANVEHRA--KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA 255 (596)
Q Consensus 179 ~~~t~L~~A~~~-~~~~ii~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A 255 (596)
.+.|+||.|+.. ++++++.+|+..|++++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~--~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHH
Confidence 445899999999 99999999999999999988 8999999999999999999999999999987 668899999999
Q ss_pred HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC---CCcccCCCCCCCHHHHHHHc
Q psy904 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG---ADIDSQDNRKVSCLMAAFRK 324 (596)
Q Consensus 256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~~~~g~t~L~~A~~~ 324 (596)
+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+.+| ++....+..+.|+++++...
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 33445556677887776543
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.8e-19 Score=147.20 Aligned_cols=93 Identities=51% Similarity=0.710 Sum_probs=85.3
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291 (596)
Q Consensus 212 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~ 291 (596)
+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 478999999999999999999999998887 567899999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHCCCC
Q psy904 292 GHLSVVELLCKHGAD 306 (596)
Q Consensus 292 g~~~iv~~Ll~~gad 306 (596)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999985
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.4e-19 Score=154.09 Aligned_cols=109 Identities=42% Similarity=0.601 Sum_probs=95.6
Q ss_pred cccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy904 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287 (596)
Q Consensus 208 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~ 287 (596)
..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|+++|++++..|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC--CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3577888999999999999999999999988877 55788999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHCCCCcccCCCCCCCHH
Q psy904 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCL 318 (596)
Q Consensus 288 A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L 318 (596)
|+..|+.+++++|+++|++++..+..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999999999998888874
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=1.2e-18 Score=148.27 Aligned_cols=109 Identities=39% Similarity=0.533 Sum_probs=92.5
Q ss_pred ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85 (596)
Q Consensus 6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A 85 (596)
-.|.+|.|+||+||..|+++++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999998887654 45788999999
Q ss_pred HHCCcHHHHHHHHhCCCCccCCCCCCCcHH
Q psy904 86 CSGGRYEVVELLLTRGANKEHRNVSDYTPL 115 (596)
Q Consensus 86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L 115 (596)
+..|+.+++++|+++|++++..+..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 999999999999999998888888877663
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=2.2e-17 Score=139.29 Aligned_cols=90 Identities=34% Similarity=0.497 Sum_probs=81.5
Q ss_pred CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323 (596)
Q Consensus 244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~ 323 (596)
.+..|.|+||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHH
Q psy904 324 KGHVKAVRWM 333 (596)
Q Consensus 324 ~g~~~iv~~L 333 (596)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 9999999886
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=2.5e-16 Score=132.74 Aligned_cols=92 Identities=34% Similarity=0.482 Sum_probs=82.8
Q ss_pred ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy904 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLW 286 (596)
Q Consensus 207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~ 286 (596)
...+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~--~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 44577888999999999999999999999998887 5678999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHH
Q psy904 287 LAANGGHLSVVELL 300 (596)
Q Consensus 287 ~A~~~g~~~iv~~L 300 (596)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=69.07 E-value=8.7 Score=40.25 Aligned_cols=141 Identities=11% Similarity=0.070 Sum_probs=75.3
Q ss_pred HHHHHHhcCcHH----HHHHHHHCCCCccccCCCCCcHHHHHHHc-CC-------------HHHHHHHHhCCCCcccccc
Q psy904 14 ALTLACAGGHEE----LVELLLSRGADIEHRDKKGFTPLILAATA-GH-------------DKVVDILLNHKADMEAQSE 75 (596)
Q Consensus 14 ~L~~A~~~g~~~----ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~-g~-------------~eiv~~Ll~~~~~~~~~~~ 75 (596)
.|..+|+.|+++ +++.+...|+.++... ++.|..|+.. +. .+++..+...|..++..+
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t---yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t- 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYH---YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT- 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH-
Confidence 466667788764 4444445677766542 3455555432 21 346666667776655432
Q ss_pred CCCChHHHHHHHCCcHHHH----HHHHhCCCCccCCCCCCCcHHHHHHhcCCHH----HHHHHHhCCCCccccCCCCCCC
Q psy904 76 RTKDTPLSLACSGGRYEVV----ELLLTRGANKEHRNVSDYTPLSLAASGGYVN----IIKLLLTHGAEINSRTGSKLGI 147 (596)
Q Consensus 76 ~~~~t~L~~A~~~g~~eiv----k~LL~~g~~~~~~d~~g~t~L~~A~~~g~~e----iv~~Ll~~g~~~~~~~~~~~g~ 147 (596)
-.+.|...+..|+++-. ..+...|..++...+ .+.|...+..|.++ ++..+...|..++.... .
T Consensus 108 --yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty----~ 179 (501)
T 4g26_A 108 --FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL----A 179 (501)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH----H
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH----H
Confidence 22455666677776544 333455665543321 24555556677765 44445566665554432 2
Q ss_pred cHHHHHHHcCCHHHHHHHH
Q psy904 148 SPLMLAAMNGHTAAVKLLL 166 (596)
Q Consensus 148 t~L~~A~~~g~~eiv~~Ll 166 (596)
+.|...+..|+.+-+..++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHH
Confidence 3445556677765444443
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=67.71 E-value=14 Score=38.69 Aligned_cols=148 Identities=11% Similarity=0.086 Sum_probs=80.9
Q ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccccCCCChHHHHHHHC-Cc-------------HHHHHHHHhCCCCccCCC
Q psy904 47 PLILAATAGHDK----VVDILLNHKADMEAQSERTKDTPLSLACSG-GR-------------YEVVELLLTRGANKEHRN 108 (596)
Q Consensus 47 ~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-g~-------------~eivk~LL~~g~~~~~~d 108 (596)
.|...+..|+++ ++..+...|..++.. ..+.|..++.. +. .+++..+...|..++...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~----tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQY----HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH----HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 455666777774 444455566655433 23455555432 21 346666677777665432
Q ss_pred CCCCcHHHHHHhcCCHH----HHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH----HHHHHHhcCCCcccccccCC
Q psy904 109 VSDYTPLSLAASGGYVN----IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA----AVKLLLDMGSDINAQIETNR 180 (596)
Q Consensus 109 ~~g~t~L~~A~~~g~~e----iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~~~~ 180 (596)
+ .+.|...+..|.++ ++..+...|..++.... .+.|...+..|..+ ++..+...|..++.. ..
T Consensus 108 y--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty----n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~---ty 178 (501)
T 4g26_A 108 F--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY----GPALFGFCRKGDADKAYEVDAHMVESEVVPEEP---EL 178 (501)
T ss_dssp H--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH----HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH---HH
T ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee----hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH---HH
Confidence 2 24566666777765 34444556665554432 24455556777765 444455566665543 22
Q ss_pred CcHHHHHHHcCCHHHHHHHHh----cCCCcc
Q psy904 181 NTALTLACFQGRHEVVSLLLD----RKANVE 207 (596)
Q Consensus 181 ~t~L~~A~~~~~~~ii~~Ll~----~g~~~~ 207 (596)
.+.|...+..|+.+-+..++. .|..++
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 366677777787765544443 355444
No 117
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=58.40 E-value=2.9 Score=23.23 Aligned_cols=11 Identities=64% Similarity=1.990 Sum_probs=7.6
Q ss_pred ccccccCCcccc
Q psy904 573 FPCYWTGRPMWS 584 (596)
Q Consensus 573 ~~~~~~~~~~~~ 584 (596)
-||||.|-| |.
T Consensus 4 CPC~~~gCp-WG 14 (27)
T 1ans_A 4 CPCYWGGCP-WG 14 (27)
T ss_dssp CCSTTTTCS-SS
T ss_pred ccccccCCc-cc
Confidence 599996554 64
No 118
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=47.87 E-value=11 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=0.8
Q ss_pred CCCCCCCCCCCCCCccchhhhcccCC
Q psy904 531 GEEGDSGIDANSQASCSSNEVKTAAP 556 (596)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (596)
+++|-+|-.+.|+||--|+++|..|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (279)
T 3p8c_D 184 LDRGGSGGSGGSGGSGGSGGSKRHPS 209 (279)
T ss_dssp CC------------------------
T ss_pred ccCCCCCCCCCCCCCCCCCccccCCC
Confidence 34555666677888888888876555
No 119
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.69 E-value=67 Score=28.11 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=25.0
Q ss_pred CcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q psy904 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69 (596)
Q Consensus 12 ~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~ 69 (596)
.+-|..|...|++++.--+....-+... -...=..|...|++++++....+-.+
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~~~~----Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLNDSIT----WERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCCHHH----HHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCHHH----HHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4556666666666655444432100000 01122345555666666655554443
No 120
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=40.97 E-value=1e+02 Score=26.96 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=68.3
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227 (596)
Q Consensus 148 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 227 (596)
+-+.+|+..|++++..-+.....+. ..-...-..|...|+++++...+....|+. ..+.+....|+.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~~-----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLNDS-----ITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHTCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCH-----HHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhCCHH
Confidence 4455666666666554443321110 011134455666777777777666544432 2233334445555
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHH-HHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHH-CCC
Q psy904 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR-FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK-HGA 305 (596)
Q Consensus 228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~-iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga 305 (596)
-+..|..... ..+..+.+++.+...|+++ .+++|++.|-- .-+..+|-.+|..++.+-|++ .|.
T Consensus 78 ~L~kla~iA~------~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 78 KLSKMQNIAQ------TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHH------HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH------HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHhCC
Confidence 5544432100 1123346677777777764 66777665321 114456667788887776654 454
Q ss_pred C
Q psy904 306 D 306 (596)
Q Consensus 306 d 306 (596)
+
T Consensus 144 ~ 144 (177)
T 3mkq_B 144 D 144 (177)
T ss_dssp C
T ss_pred c
Confidence 4
No 121
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=35.92 E-value=6.8 Score=26.46 Aligned_cols=13 Identities=15% Similarity=0.716 Sum_probs=8.0
Q ss_pred cCccccccccCCc
Q psy904 569 DMRWFPCYWTGRP 581 (596)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (596)
+-.|||-||.|..
T Consensus 37 ~TtW~~~y~~G~~ 49 (53)
T 1ijd_A 37 HTTWYAAFLQGGV 49 (53)
T ss_dssp SCSHHHHHTC---
T ss_pred cCchHHHHhCCcc
Confidence 4579999998853
No 122
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.07 E-value=3.5e+02 Score=28.61 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.8
Q ss_pred CCCCcHHHHHHH
Q psy904 42 KKGFTPLILAAT 53 (596)
Q Consensus 42 ~~g~t~L~~A~~ 53 (596)
..|.|.|..+..
T Consensus 48 nvGKStLiN~L~ 59 (592)
T 1f5n_A 48 RTGKSYLMNKLA 59 (592)
T ss_dssp TSSHHHHHHHHT
T ss_pred CCCHHHHHHhHc
Confidence 345555555443
No 123
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=30.56 E-value=7.9 Score=26.16 Aligned_cols=12 Identities=50% Similarity=1.506 Sum_probs=8.7
Q ss_pred CccccccccCCc
Q psy904 570 MRWFPCYWTGRP 581 (596)
Q Consensus 570 ~~~~~~~~~~~~ 581 (596)
-.|||-||.|..
T Consensus 38 TtW~~~y~~G~~ 49 (53)
T 1nkz_A 38 TTWFPAYWQGGV 49 (53)
T ss_dssp CSHHHHHHHCCC
T ss_pred CchHHHHhCCcc
Confidence 468888888754
No 124
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=30.34 E-value=11 Score=37.64 Aligned_cols=20 Identities=5% Similarity=-0.095 Sum_probs=8.5
Q ss_pred CCCCCCHHHHHHHcCCHHHH
Q psy904 311 DNRKVSCLMAAFRKGHVKAV 330 (596)
Q Consensus 311 ~~~g~t~L~~A~~~g~~~iv 330 (596)
|..|+..+..+.........
T Consensus 310 D~~gNyViq~~l~~~~~~~~ 329 (369)
T 3k49_A 310 DQFANYVIQKLVNVSEGEGK 329 (369)
T ss_dssp STTHHHHHHHHHHHCCHHHH
T ss_pred CcchHHHHHHHHHhCCHHHH
Confidence 34444444444444333333
No 125
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=29.89 E-value=25 Score=34.66 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=13.3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHH
Q psy904 245 PSSRDTALTIAADKGHCRFVELLLS 269 (596)
Q Consensus 245 ~~~g~t~L~~A~~~~~~~iv~~Ll~ 269 (596)
+..|+.++..+...+.......|++
T Consensus 293 d~ygnyViq~~L~~~~~~~r~~i~~ 317 (351)
T 3gvo_A 293 DQYANYVVQKMIDMAEPAQRKIIMH 317 (351)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CcchHHHHHHHHHhCCHHHHHHHHH
Confidence 3456666666665555544333333
No 126
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=24.00 E-value=19 Score=35.88 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=17.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 39 HRDKKGFTPLILAATAGHDKVVDILLN 65 (596)
Q Consensus 39 ~~d~~g~t~L~~A~~~g~~eiv~~Ll~ 65 (596)
..|.+|+..+......+..+....+++
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~ 99 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVD 99 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHH
Confidence 346677777777777777665555554
No 127
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=23.94 E-value=72 Score=31.19 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=3.7
Q ss_pred ChHHHHHH
Q psy904 282 NSPLWLAA 289 (596)
Q Consensus 282 ~TpL~~A~ 289 (596)
.|.|||.+
T Consensus 177 ~TLLh~lv 184 (340)
T 1v9d_A 177 MTLLHFLA 184 (340)
T ss_dssp SBHHHHHH
T ss_pred ccHHHHHH
Confidence 44455443
No 128
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=22.70 E-value=22 Score=19.97 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=5.0
Q ss_pred CCCCCCccchhh
Q psy904 539 DANSQASCSSNE 550 (596)
Q Consensus 539 ~~~~~~~~~~~~ 550 (596)
|-.+++-|++|+
T Consensus 4 dde~~ads~~sT 15 (26)
T 1q1s_A 4 DDEAAADAQHAA 15 (26)
T ss_pred cccccccccccC
Confidence 334444344443
No 129
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.62 E-value=19 Score=35.51 Aligned_cols=53 Identities=9% Similarity=-0.159 Sum_probs=26.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCChHHHHHHHCCcHH
Q psy904 40 RDKKGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKDTPLSLACSGGRYE 92 (596)
Q Consensus 40 ~d~~g~t~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~t~L~~A~~~g~~e 92 (596)
.|.+|+..+.-....++.+....+++. |.-.....+..|...+..+......+
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~ 123 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSD 123 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH
Confidence 466666677666677766655555542 21122222334444444444444433
No 130
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=22.51 E-value=1.5e+02 Score=29.46 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=33.9
Q ss_pred HHhcCcHHHHHHHHHCCCCcccc--------------CCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904 18 ACAGGHEELVELLLSRGADIEHR--------------DKKGFTPLILAATAGHDKVVDILLN 65 (596)
Q Consensus 18 A~~~g~~~ivk~Ll~~g~~i~~~--------------d~~g~t~L~~A~~~g~~eiv~~Ll~ 65 (596)
.+..|+...|+..+..|-+++.. -..|.|.+|+|++..+.+++-.|+.
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34578999999999888776432 2346677777777777777777765
No 131
>2dbh_A Tumor necrosis factor receptor superfamily member 21; apoptosis, TNF receptor superfamily, NF-kappab, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.18 E-value=11 Score=27.52 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=15.8
Q ss_pred cCccccccccC--Ccc-cccCCcccccc
Q psy904 569 DMRWFPCYWTG--RPM-WSIEPSQCLTI 593 (596)
Q Consensus 569 ~~~~~~~~~~~--~~~-~~~~~~~~~~~ 593 (596)
.-|..||+..- .|| .++.|.+|+.|
T Consensus 29 ~~~l~p~~l~p~fd~mlh~lnpee~~vi 56 (102)
T 2dbh_A 29 QVRLDPCDLQPIFDDMLHFLNPEELRVI 56 (102)
T ss_dssp HHHHSCCCCSHHHHHHHHHSCHHHHHHH
T ss_pred ceecCchhhhhhhHHHHhhcCHHHHhhh
Confidence 34678998531 122 36788888866
Done!