RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy904
(596 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 125 bits (317), Expect = 3e-34
Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA + GH E+V+LLL GAD+ +D G TPL LAA GH ++V +LL AD+ A
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
+ + +TPL LA G +VV+LLL GA+ R+ TPL LAA G++ ++KLLL
Sbjct: 69 RD-KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 123 bits (311), Expect = 2e-33
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 39 HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
RD+ G TPL LAA+ GH +VV +LL + AD+ A+ TPL LA G E+V+LLL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND-GRTPLHLAAKNGHLEIVKLLL 60
Query: 99 TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
+GA+ R+ TPL LAA G ++++KLLL HGA++N+R K G +PL LAA NGH
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD--KDGRTPLHLAAKNGH 118
Query: 159 TAAVKLLL 166
VKLLL
Sbjct: 119 LEVVKLLL 126
Score = 121 bits (305), Expect = 1e-32
Identities = 60/125 (48%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 76 RTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
TPL LA S G EVV+LLL GA+ ++ TPL LAA G++ I+KLLL GA
Sbjct: 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 136 EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
++N+R K G +PL LAA NG+ VKLLL G+D+NA+ + + T L LA G EV
Sbjct: 65 DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEV 121
Query: 196 VSLLL 200
V LLL
Sbjct: 122 VKLLL 126
Score = 118 bits (298), Expect = 1e-31
Identities = 58/127 (45%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
R + G TPL AAS G++EV ++LL+ GADVNA + T L +AA GH V+LL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLL 59
Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
L KGA V ++K GN+PL LAA G+L VV+LL KHGAD++++D + L A + GH+
Sbjct: 60 LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119
Query: 328 KAVRWMV 334
+ V+ ++
Sbjct: 120 EVVKLLL 126
Score = 117 bits (294), Expect = 5e-31
Identities = 58/123 (47%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL LAA NGH VKLLL+ G+D+NA+ + T L LA G E+V LLL++ A+
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
V R K G TPL AA G ++V ++LL GADVNA T L +AA GH V+
Sbjct: 66 VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA--RDKDGRTPLHLAAKNGHLEVVK 123
Query: 266 LLL 268
LLL
Sbjct: 124 LLL 126
Score = 111 bits (279), Expect = 5e-29
Identities = 58/126 (46%), Positives = 75/126 (59%), Gaps = 10/126 (7%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ T L LA G EVV LLL+ A+V + G TPL AA G++E+ ++LL+KGAD
Sbjct: 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65
Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
VNA RD T L +AA G+ V+LLL GA V ++K G +PL LAA GHL
Sbjct: 66 VNA------RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119
Query: 295 SVVELL 300
VV+LL
Sbjct: 120 EVVKLL 125
Score = 95.9 bits (239), Expect = 1e-23
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 9 SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
++ T L LA GH E+V+LLL +GAD+ RDK G TPL LAA G+ VV +LL H A
Sbjct: 38 NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLL 98
D+ A+ ++ TPL LA G EVV+LLL
Sbjct: 98 DVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 93.6 bits (233), Expect = 8e-23
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L +AA GH V+LLL GA V K+ G +PL LAA GHL +V+LL + GAD+++
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+D + L A R G++ V+ ++ H A
Sbjct: 69 RDKDGNTPLHLAARNGNLDVVKLLLKHGA 97
Score = 63.9 bits (156), Expect = 3e-12
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+++ G +PL LAA+ GHL VV+LL ++GAD++++DN + L A + GH++ V+ ++
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 336 HVA 338
A
Sbjct: 62 KGA 64
Score = 27.7 bits (62), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 5 SETESNHDTALTLACAGGHEELVELLL 31
+ + + T L LA GH E+V+LLL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 107 bits (269), Expect = 6e-25
Identities = 66/317 (20%), Positives = 119/317 (37%), Gaps = 71/317 (22%)
Query: 55 GHDKVVDILLNHKADMEAQSERTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVS 110
+++ + ME PL LA +VV++LL GA+ +
Sbjct: 8 TKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKN 67
Query: 111 DYTPLSLAASGGYV-----NIIKLLLTHGAEINSRTGSKLGISPLMLAAMN--GHTAAVK 163
+ TPL ++ Y I+KLLL +GA +N+ GI+PL+ A + V+
Sbjct: 68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA--PDNNGITPLLYAISKKSNSYSIVE 125
Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223
LLD G+++N + G L
Sbjct: 126 YLLDNGANVNI----------------------------------KNSDGENLLHLYLES 151
Query: 224 GYV--EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKG 281
+ ++ ++L+DKG D+N A ++ V LLS G + +K+ G
Sbjct: 152 NKIDLKILKLLIDKGVDIN--------------AKNR-----VNYLLSYGVPINIKDVYG 192
Query: 282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341
+PL A + V+ L GA+ + + + L A + + + ++N+ P
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN---GP 249
Query: 342 SDQEMTRYIQTVNDKEL 358
S + + + DK+L
Sbjct: 250 SIKTIIETLLYFKDKDL 266
Score = 97.8 bits (244), Expect = 9e-22
Identities = 65/227 (28%), Positives = 93/227 (40%), Gaps = 30/227 (13%)
Query: 24 EELVELLLSRGADIEHRDKKGFTPLILAATAGHD-----KVVDILLNHKADMEAQSERTK 78
++V++LL GADI K TPL + ++ ++V +LL + A++ A
Sbjct: 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG- 106
Query: 79 DTPLSLACSG--GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV--NIIKLLLTHG 134
TPL A S Y +VE LL GAN +N L L + I+KLL+ G
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
+IN++ V LL G IN + T L A + E
Sbjct: 167 VDINAKN-------------------RVNYLLSYGVPINI-KDVYGFTPLHYAVYNNNPE 206
Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
V LLD AN K G TPL A E+ ++LL+ G +
Sbjct: 207 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
Score = 67.0 bits (164), Expect = 8e-12
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHD--KVVDILLNHKADMEAQSE---- 75
+VE LL GA++ ++ G L L + K++ +L++ D+ A++
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL 178
Query: 76 -------RTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
KD TPL A E V+ LL GAN N TPL +A
Sbjct: 179 LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK 238
Query: 125 NIIKLLLTHGAEIN 138
I KLLL +G I
Sbjct: 239 EIFKLLLNNGPSIK 252
Score = 41.2 bits (97), Expect = 0.001
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + E V+ LL GA+ +K G TPL +A + ++ +LLN+ ++
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252
Query: 72 A 72
Sbjct: 253 T 253
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 97.3 bits (243), Expect = 2e-24
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L LAA NG+ VKLLL+ G+D+N + +TAL LA G E+V LLL+ A+V +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
K G T L AA G +E+ ++LL+ GAD+N
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 91.2 bits (227), Expect = 3e-22
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
L AA G +E+ ++LL+KGADVN DTAL +AA G+ V+LLL GA V
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
K+K GN+ L LAA G+L +V+LL +HGADI+ +D
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 90.4 bits (225), Expect = 4e-22
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
L LA G+ ELV+LLL +GAD+ D T L LAA G+ ++V +LL H AD+ A+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
+ +T L LA G E+V+LLL GA+ ++
Sbjct: 59 -KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 90.0 bits (224), Expect = 6e-22
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 48 LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
L LAA G+ ++V +LL AD+ DT L LA G E+V+LLL GA+ +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR 140
+ T L LAA G + I+KLLL HGA+IN +
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 89.6 bits (223), Expect = 7e-22
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 82 LSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
L LA G E+V+LLL +GA+ + T L LAA G + I+KLLL HGA++N++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
K G + L LAA NG+ VKLLL+ G+DIN +
Sbjct: 59 --KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 89.2 bits (222), Expect = 1e-21
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
L LAA G + ++KLLL GA++N + L LAA NG+ VKLLL+ G+D+NA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
+ + + NTAL LA G E+V LLL+ A++ +
Sbjct: 57 KDK-DGNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 81.9 bits (203), Expect = 5e-19
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
L +AA G+ V+LLL KGA V + + ++ L LAA G+L +V+LL +HGAD++++D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNH 336
+ L A R G+++ V+ ++ H
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEH 83
Score = 78.1 bits (193), Expect = 1e-17
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
L LA G E+V LLL++ A+V T L AA G +E+ ++LL+ GADVNA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA-- 56
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN 278
+TAL +AA G+ V+LLL GA + +K+
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 73.8 bits (182), Expect = 3e-16
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
+ DTAL LA G+ E+V+LLL GAD+ +DK G T L LAA G+ ++V +LL H AD
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86
Score = 41.9 bits (99), Expect = 5e-05
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRD 41
DV++ + + +TAL LA G+ E+V+LLL GADI +D
Sbjct: 53 DVNA-KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 102 bits (256), Expect = 3e-23
Identities = 80/252 (31%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL---AASGGYVNIIKLLLTHGAEINSR 140
L S E V LL GA+ R TPL L +S +I++LLL GA++N+
Sbjct: 20 LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP 79
Query: 141 TGSKLGISPLMLAAMNGHTAAV-KLLLDMGSDINAQIETNRNTALT--LACFQGRHEVVS 197
+ G +PL L N T V KLL+ G+D+NA+ + T L L+ F +V+
Sbjct: 80 --ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIR 136
Query: 198 LLLDRKANVEHRAKTGLTPLMEAA----SGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
LLL + A+V G+TPL A VE+ R+L+D GADV A V + L
Sbjct: 137 LLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYA--VDDRFRSLLH 192
Query: 254 IAAD--KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL--SVVELLCKHGADIDS 309
K R V L+ G + GN+PL A G S+V L G I++
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
Query: 310 QDNRKVSCLMAA 321
++ + L A
Sbjct: 253 RNRYGQTPLHYA 264
Score = 97.8 bits (244), Expect = 1e-21
Identities = 85/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)
Query: 25 ELVELLLSRGADIEHRDKKGFTPL-ILAATAGHD--KVVDILLNHKADMEAQSERTKDTP 81
E V LL+ GAD+ R + G TPL + + +V +LL AD+ A ER TP
Sbjct: 28 EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTP 86
Query: 82 L-SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN--IIKLLLTHGAEIN 138
L + +V++LL+ GA+ ++ TPL + SG +N +I+LLL GA++N
Sbjct: 87 LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146
Query: 139 SRTGSKLGISPL--MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC--FQGRHE 194
+ G++PL +L + N + ++LL+D G+D+ A ++ + L F+ R
Sbjct: 147 AL--DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRAR 203
Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV--LLDKGADVNAPPVPSSRDTAL 252
+V L+ + G TPL A+G + V LL G +NA
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR---------- 253
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
N+ G +PL AA + L GADI++ +
Sbjct: 254 -------------------------NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS 288
Query: 313 RKVSCLMAAFRKGHVKAVR 331
+ L R + +AVR
Sbjct: 289 DGNTPLSLMVRNNNGRAVR 307
Score = 83.2 bits (206), Expect = 7e-17
Identities = 71/290 (24%), Positives = 110/290 (37%), Gaps = 53/290 (18%)
Query: 2 DVDSETESNHDTAL-TLACAGGHEELVELLLSRGADIEHRDKKGFTPL--ILAATAGHDK 58
DV++ E T L ++++LL+ GAD+ +DK G TPL L+ + K
Sbjct: 75 DVNA-PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133
Query: 59 VVDILLNHKADMEAQSERTKDTPLS--------------LACSGG--------------- 89
V+ +LL AD+ A TPL+ L G
Sbjct: 134 VIRLLLRKGADVNALDLYGM-TPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192
Query: 90 --------RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL--LLTHGAEINS 139
R +V L+ G + ++ TPL A+G + LL G IN+
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
R ++ G +PL AA+ + A + L+ +G+DINA NT L+L V
Sbjct: 253 R--NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG-NTPLSLMVRNNNGRAVRAA 309
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGR-----VLLDKGADVNAPPV 244
L + + E A T L A + R V+L + P+
Sbjct: 310 LAKNPSAETVAAT-LNTASVAGGDIPSDATRLCVAKVVLRGAFSLLPEPI 358
Score = 68.5 bits (168), Expect = 4e-12
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 194 EVVSLLLDRKANVEHR---AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
E V LL A+V R KT L + +S ++ R+LL+ GADVNAP T
Sbjct: 28 EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFT 85
Query: 251 ALTIAADKGHC--------RFVELLLSKGAQVEVKNKKGNSPL--WLAANGGHLSVVELL 300
L H ++LL+ GA V K+K G +PL +L+ + V+ LL
Sbjct: 86 PL-------HLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLL 138
Query: 301 CKHGADIDSQDNRKVSCLMAAFRKGH---VKAVRWMVNHVA 338
+ GAD+++ D ++ L A K V+ +R +++ A
Sbjct: 139 LRKGADVNALDLYGMTPL-AVLLKSRNANVELLRLLIDAGA 178
Score = 43.9 bits (104), Expect = 2e-04
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
+ +V+ + L + AS VE R LL GADVN T L +
Sbjct: 1 DEEDESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADVNF--RGEYGKTPLHLYLHYS 58
Query: 260 H---CRFVELLLSKGAQVEVKNKKGNSPLWL-AANGGHLSVVELLCKHGADIDSQDN 312
V LLL GA V + G +PL L N L V++LL K GAD++++D
Sbjct: 59 SEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 88.3 bits (218), Expect = 1e-19
Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 12/208 (5%)
Query: 1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
+ S+ + N L L A EL+ L+ + RD G PL AA+ G DK+V
Sbjct: 31 LSNPSDKKLNLYLELALLPAASLSELLLKLIVDR-HLAARDLDGRLPLHSAASKGDDKIV 89
Query: 61 DILLNHKADMEAQSERTKDTPLSLACSGGR-----YEVVELLLTRGANKE---HRNVSDY 112
+LL AD+ A+ DTPL LA G EV +LLL GA+ + R+
Sbjct: 90 KLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
TPL AA G +I++LLL GA+ NSR G++ L AA NG VKLLLD G +
Sbjct: 149 TPLHWAALNGDADIVELLLEAGADPNSRN--SYGVTALDPAAKNGRIELVKLLLDKGLHL 206
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLL 200
+ A + + SL++
Sbjct: 207 SLLKFNLEGVANANVSKRNILNLTSLII 234
Score = 85.3 bits (210), Expect = 9e-19
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
SK +S L+L + LL + S + + + LLL
Sbjct: 1 SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60
Query: 203 KANVE--HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA---- 256
+ R G PL AAS G ++ ++LL GADVNA DT L +AA
Sbjct: 61 IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG--DTPLHLAALNGN 118
Query: 257 -DKGHCRFVELLLSKGAQVEV---KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
+G+ +LLL GA ++V +++ GN+PL AA G +VELL + GAD +S+++
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS 178
Query: 313 RKVSCLMAAFRKGHVKAVRWMVNHV 337
V+ L A + G ++ V+ +++
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKG 203
Score = 81.4 bits (200), Expect = 2e-17
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA-CSGGRYEVVELLLTRG 101
K +L ++ + L ++ + K L L + ELLL
Sbjct: 2 KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61
Query: 102 ANKEHRNVSDY--TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
++ PL AAS G I+KLLL GA++N++ G +PL LAA+NG+
Sbjct: 62 VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNP 119
Query: 160 -----AAVKLLLDMGS--DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
KLLL+ G+ D+N + + NT L A G ++V LLL+ A+ R
Sbjct: 120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
G+T L AA G +E+ ++LLDKG ++
Sbjct: 180 GVTALDPAAKNGRIELVKLLLDKGLHLSL 208
Score = 78.3 bits (192), Expect = 2e-16
Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 9/203 (4%)
Query: 14 ALTLACAGGHEELVELLLSRGADI--EHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
AL L + L+ LL + DKK L LA +L
Sbjct: 7 ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA-----SGGYVNI 126
A + PL A S G ++V+LLL GA+ ++ TPL LAA G + +
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 127 IKLLLTHGAEI-NSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
KLLL GA++ + + G +PL AA+NG V+LLL+ G+D N++ TAL
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS-YGVTALD 185
Query: 186 LACFQGRHEVVSLLLDRKANVEH 208
A GR E+V LLLD+ ++
Sbjct: 186 PAAKNGRIELVKLLLDKGLHLSL 208
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 91.7 bits (227), Expect = 3e-19
Identities = 98/330 (29%), Positives = 153/330 (46%), Gaps = 38/330 (11%)
Query: 26 LVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME------------AQ 73
+ E+LL GAD+ +D TP+ AA G+ K+V++LL++ AD+ A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219
Query: 74 SERTKDT--------------PLSL--ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL 117
+ DT LSL A E LL G + + TPL
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279
Query: 118 AASGGYVN-IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH-TAAVKLLLDMGSDINAQ 175
A+ ++ ++ LL GA++N++ G +PL L A NG+ T ++ L+ +G+D+NA
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIK--GETPLYLMAKNGYDTENIRTLIMLGADVNAA 337
Query: 176 IETNRNTALTLACFQGRH-EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+ T L A R+ ++V LL+ ANV R TP+ AA V + LLD
Sbjct: 338 -DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396
Query: 235 KGADVNAPPVPSSRDTALTIA-ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA-NGG 292
GAD+ A + TAL A V+ L+ +GA V KNK ++PL A
Sbjct: 397 YGADIEA--LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC 454
Query: 293 HLSVVELLCKHGADIDSQDNRKVSCLMAAF 322
L V+E+L +GAD+++ + + L+ A
Sbjct: 455 KLDVIEMLLDNGADVNAINIQNQYPLLIAL 484
Score = 84.3 bits (208), Expect = 5e-17
Identities = 84/253 (33%), Positives = 115/253 (45%), Gaps = 45/253 (17%)
Query: 26 LVELLLSRGADIEHRDKKGFTPLILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSL 84
LV LL RGAD+ ++ KG TPL L A G+D + + L+ AD+ A ++R TPL
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQ 347
Query: 85 ACSGGRY-EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
A + R ++V LL GAN R+ D TP+ AA V II LL +GA+I + +
Sbjct: 348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS-Q 406
Query: 144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA-CFQGRHEVVSLLLDR 202
K+G TAL A C + V L+DR
Sbjct: 407 KIG-----------------------------------TALHFALCGTNPYMSVKTLIDR 431
Query: 203 KANVEHRAKTGLTPLMEAASGG-YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
ANV + K TPL A ++V +LLD GADVNA + L IA +
Sbjct: 432 GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA--INIQNQYPLLIAL--EYH 487
Query: 262 RFVELLLSKGAQV 274
V +LL GA++
Sbjct: 488 GIVNILLHYGAEL 500
Score = 65.9 bits (160), Expect = 3e-11
Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 12 DTALTLACAGGHE-ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
+T L L G++ E + L+ GAD+ D+ TPL A+T
Sbjct: 308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL---------------- 351
Query: 71 EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+R KD ++ LL GAN R+ D TP+ AA V II L
Sbjct: 352 ----DRNKDIVIT-------------LLELGANVNARDYCDKTPIHYAAVRNNVVIINTL 394
Query: 131 LTHGAEINSRTGSKLGIS-PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
L +GA+I + + K+G + L N + +VK L+D G+++N++ + +T L AC
Sbjct: 395 LDYGADIEALS-QKIGTALHFALCGTNPYM-SVKTLIDRGANVNSK-NKDLSTPLHYACK 451
Query: 190 QG-RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
+ + +V+ +LLD A+V PL+ A Y + +LL GA++
Sbjct: 452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAEL 500
Score = 37.0 bits (85), Expect = 0.034
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
E+LL GA V K+ +P+ AA G+ +V LL +GAD++ +S L A
Sbjct: 159 LIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Query: 322 FRKGHVKAVRWMVNH 336
++ ++ ++++
Sbjct: 219 VDSKNIDTIKAIIDN 233
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 81.9 bits (202), Expect = 1e-16
Identities = 84/369 (22%), Positives = 159/369 (43%), Gaps = 60/369 (16%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A G ++VEL + GADI H + K PL+ A G ++ +L+++ D
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
L + C ++++ +L G + ++ T L A G + IK+L
Sbjct: 97 ---------LPIPCIEK--DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
+GA++N + G P+ +A + +KLLL+ G+ N + + N + L A G
Sbjct: 146 YGADVNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGD 202
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
+ + LL+D ++ ++ K G TPL A ++ ++ A
Sbjct: 203 YACIKLLIDHGNHIMNKCKNGFTPLHNA----------IIHNRSA--------------- 237
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN-GGHLSVVELLCKHGADIDSQD 311
+ELL++ A + ++ G++PL A N + ++++L H ADI +D
Sbjct: 238 -----------IELLINN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKD 285
Query: 312 NRKVSCLMAAFRK-------GHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQE 364
N+ + + AF+ + A ++ + D + +I+ ++KE D +E
Sbjct: 286 NKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLK-DSDFLEHIEIKDNKEFSDFIKE 344
Query: 365 CSMVIRVAK 373
C+ I K
Sbjct: 345 CNEEIEDMK 353
Score = 66.9 bits (163), Expect = 1e-11
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
+PL+ A +G V+L + G+DIN I T L A G H+++ LL+D +
Sbjct: 36 TTPLIDAIRSGDAKIVELFIKHGADIN-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVD- 93
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
T + P+ ++ + +LD G DVN T L A KG +++
Sbjct: 94 -----TSILPIPCIEK----DMIKTILDCGIDVNIKDAELK--TFLHYAIKKGDLESIKM 142
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
L GA V +++ G P+ +A +++LL + GA + +DN S L A G
Sbjct: 143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD 202
Query: 327 VKAVRWMVNH 336
++ +++H
Sbjct: 203 YACIKLLIDH 212
Score = 31.5 bits (71), Expect = 1.4
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRK 324
+++ +KG + + + +PL A G +VEL KHGADI+ + + L+ A +
Sbjct: 19 KIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI 78
Query: 325 GHVKAVRWMV 334
G ++ ++
Sbjct: 79 GAHDIIKLLI 88
Score = 31.5 bits (71), Expect = 1.5
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N ++ L A G ++LL+ G I ++ K GFTPL A H++ LL + A
Sbjct: 189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII--HNRSAIELLINNAS 246
Query: 70 MEAQSERTKDTPLSLA----CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
+ Q + TPL A C +++++LL A+ ++ P+ A Y+N
Sbjct: 247 INDQ-DIDGSTPLHHAINPPCD---IDIIDILLYHKADISIKDNKGENPIDTAFK--YIN 300
Query: 126 ---IIKLLLTHGAEIN 138
+IK ++ + I
Sbjct: 301 KDPVIKDIIANAVLIK 316
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 79.9 bits (197), Expect = 9e-16
Identities = 73/276 (26%), Positives = 117/276 (42%), Gaps = 31/276 (11%)
Query: 25 ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT---- 80
++V+ LL+RG ++ D + TPL + N E K +
Sbjct: 51 DVVKSLLTRGHNVNQPDHRDLTPLHIICKEP---------NKLGMKEMIRSINKCSVFYT 101
Query: 81 --PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN--IIKLLLTHGAE 136
+ A + E+ +++LT D + + + I KLLL++GA+
Sbjct: 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQ--TIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
IN + K + L A N +LLL G+++N +TN N+ L A +V
Sbjct: 160 INMKDRHKGN-TALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHHAVKHYNKPIV 217
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYV---EVGRVLLDKGADVNAPPVPSSRD-TAL 252
+LL+ A+ + R K G TPL S GY ++ ++LL+ G DVNA TAL
Sbjct: 218 HILLENGASTDARDKCGNTPLH--ISVGYCKDYDILKLLLEHGVDVNAK--SYILGLTAL 273
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
+ R ++LLL GA + N +PL A
Sbjct: 274 HSSIKSE--RKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 70.7 bits (173), Expect = 6e-13
Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 12/203 (5%)
Query: 33 RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE 92
+ D+ + DKK +I A ++ +LL++ AD+ + +T L A
Sbjct: 129 QTIDLVYIDKKSKDDIIEA------EITKLLLSYGADINMKDRHKGNTALHYATENKDQR 182
Query: 93 VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
+ ELLL+ GAN + ++ +PL A I+ +LL +GA ++R K G +PL +
Sbjct: 183 LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR--DKCGNTPLHI 240
Query: 153 AAMNGHTAAV-KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
+ + KLLL+ G D+NA+ TAL + R + LLL+ A++
Sbjct: 241 SVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNS 298
Query: 212 TGLTPLMEAASGGY-VEVGRVLL 233
LTPL A + +GR+L+
Sbjct: 299 YKLTPLSSAVKQYLCINIGRILI 321
Score = 66.4 bits (162), Expect = 1e-11
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 43/192 (22%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D++ + +TAL A + L ELLLS GA++ D
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD-------------------- 198
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+T ++PL A +V +LL GA+ + R+ TPL ++
Sbjct: 199 --------------KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV-- 242
Query: 122 GYV---NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
GY +I+KLLL HG ++N+++ LG++ L + + +KLLL+ G+DIN+ + +
Sbjct: 243 GYCKDYDILKLLLEHGVDVNAKS-YILGLTALHSSIKS--ERKLKLLLEYGADINS-LNS 298
Query: 179 NRNTALTLACFQ 190
+ T L+ A Q
Sbjct: 299 YKLTPLSSAVKQ 310
Score = 63.4 bits (154), Expect = 1e-10
Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 91 YEVVELLLTRGANKEHR----NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
YE + + + E+ ++ + PL A ++++K LLT G +N + +
Sbjct: 13 YETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN-QPDHR-D 70
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV-SLLLDRKAN 205
++PL + + +K ++ IN A+ A E+ +L +R N
Sbjct: 71 LTPLHIICKEPNKLGMKEMI---RSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN 127
Query: 206 VEHRAKTGLTPLMEAASGGYVE--VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
++ L + + + +E + ++LL GAD+N +TAL A + R
Sbjct: 128 IQ---TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKD-RHKGNTALHYATENKDQRL 183
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
ELLLS GA V + +K NSPL A + +V +L ++GA D++D
Sbjct: 184 TELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231
Score = 57.2 bits (138), Expect = 1e-08
Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR 140
PL A +VV+ LLTRG N + D TPL + +K ++ IN
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMI---RSINKC 96
Query: 141 TGSKLGISPLMLAAM--NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH----- 193
+ + + + N + K++L N + + + L + +
Sbjct: 97 ---SVFYTLVAIKDAFNNRNVEIFKIIL-----TN-RYKNIQTIDLVYIDKKSKDDIIEA 147
Query: 194 EVVSLLLDRKANVEHRAK-TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
E+ LLL A++ + + G T L A + +LL GA+VN P + ++ L
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK--TNNSPL 205
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL---SVVELLCKHGADIDS 309
A + V +LL GA + ++K GN+PL ++ G+ +++LL +HG D+++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV--GYCKDYDILKLLLEHGVDVNA 263
Query: 310 Q 310
+
Sbjct: 264 K 264
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 78.1 bits (192), Expect = 2e-15
Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 37/309 (11%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+P+ LA E ++LL+ GA + + + L A G V ++ LL G +
Sbjct: 37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
K G++PL LA + +KLL+ G+D + T++ + L LA G + + LL
Sbjct: 97 -VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELL 154
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN----APPVPSSRDTALTIA 255
+D KA ++ G TPL+ A + G + + ++LLD GA+++ V AL A
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV-----AALCYA 209
Query: 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV 315
+ V L + +GA + + G ++++++C +++S+ +
Sbjct: 210 IENNKIDIVRLFIKRGA---------DCNIMFMIEGEECTILDMICNMCTNLESE---AI 257
Query: 316 SCLMA--AFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDK-ELLDKCQECSMVIRVA 372
L+A A R H K +R D+ + T+ DK E D ++C + +R
Sbjct: 258 DALIADIAIRI-HKKTIR----------RDEGFKNNMSTIEDKEEFKDVFEKCIIELRRI 306
Query: 373 KNQQAERAN 381
K+++ + N
Sbjct: 307 KSEKIGKKN 315
Score = 70.4 bits (172), Expect = 7e-13
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA- 68
AL A G ++ LL G + G +P+ LA + + +L+ H A
Sbjct: 1 MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI 60
Query: 69 ------DMEAQ----SERTK----------------------DTPLSLACSGGRYEVVEL 96
D+E++ E TPL LA + ++++L
Sbjct: 61 PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL 120
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
L+ RGA+ + N ++PL LA G + I+LL+ H A ++ G +PL++A
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC--CGCTPLIIAMAK 178
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACF---QGRHEVVSLLLDRKAN 205
G A K+LLD G++I+ +N + C+ + ++V L + R A+
Sbjct: 179 GDIAICKMLLDSGANIDY---FGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227
Score = 58.5 bits (141), Expect = 4e-09
Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA ++++LL++RGAD + + F+PL LA G K +++L++HKA ++
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEH--RNVSDYTPLSLAASGGYVNIIKLL 130
+ + TPL +A + G + ++LL GAN ++ +N L A ++I++L
Sbjct: 164 E-DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN-GCVAALCYAIENNKIDIVRLF 221
Query: 131 LTHGAEIN 138
+ GA+ N
Sbjct: 222 IKRGADCN 229
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 64.4 bits (157), Expect = 8e-11
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 34/271 (12%)
Query: 92 EVVELLLTRGANKEHRNVSDYTPL------SLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
++V+LL+ GA+ ++ + TPL S I+KLLL GA+IN +T +
Sbjct: 51 KIVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFN-- 107
Query: 146 GISPLMLAAMNGHTAAV---KLLLDMGSDINAQIETNRNTALTLACFQG---RHEVVSLL 199
G+SP++ N + + LL G ++N ++ +R L + + +V+ +L
Sbjct: 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSRGYNLLHMYLESFSVKKDVIKIL 166
Query: 200 LDRKANV-EHRAKTGLTP----LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI 254
L N+ E + GLTP L ++V + L+ KG ++ S ++ L
Sbjct: 167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGS--ESVLES 224
Query: 255 AAD------KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
D K + + +L K ++ K+KKG +PL ++A + L K G DI
Sbjct: 225 FLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY 283
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+ + L A + G++ M+N + Q
Sbjct: 284 NVSKDGDTVLTYAIKHGNI----DMLNRILQ 310
Score = 47.8 bits (114), Expect = 1e-05
Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 123 YVNIIKLLLTHGAEINS-RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ--IETN 179
N ++ LL G ++N G+ I L L + VKLL+D G+D+N + IET
Sbjct: 15 DKNALEFLLRTGFDVNEEYRGNS--ILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETP 72
Query: 180 -----RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM---EAASGGYVEVGRV 231
RN +T + ++V LLL A++ + G++P++ ++ ++ R
Sbjct: 73 LCAVLRNREITSNKIK---KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF 129
Query: 232 LLDKGADVNAPPVPSSRDTAL--------TIAADKGHCRFVELLLSKGAQV-EVKNKKGN 282
LL KG +VN V +SR L ++ D +++LLS G + E + G
Sbjct: 130 LLSKGINVND--VKNSRGYNLLHMYLESFSVKKD-----VIKILLSFGVNLFEKTSLYGL 182
Query: 283 SPLWL----AANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
+P+ + + + V++ L K G +I++ +N S L
Sbjct: 183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL 222
Score = 33.6 bits (77), Expect = 0.33
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
I +DKKGF PL+++A + + + LL D+ S + DT L+ A G +++
Sbjct: 249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS-KDGDTVLTYAIKHGNIDMLNR 307
Query: 97 LLTRGANK 104
+L K
Sbjct: 308 ILQLKPGK 315
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 56.1 bits (136), Expect = 2e-10
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
TAL A G ELV+ LL +G DI D+ G T L +AA G+ +V+ +LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 52.6 bits (127), Expect = 3e-09
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200
+ L AA++G VK LL+ G DIN E + NTAL +A G EV+ LLL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54
Score = 51.9 bits (125), Expect = 5e-09
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
G + L AA G L +V+ L + G DI+ D + L A G+++ ++ ++
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 51.9 bits (125), Expect = 6e-09
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
G T L +AA G +E+ + LL+KG D+N +TAL IAA+ G+ ++LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINR--TDEDGNTALHIAAENGNLEVLKLLL 54
Score = 51.5 bits (124), Expect = 9e-09
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
T L AA G + ++K LL G +IN G + L +AA NG+ +KLLL
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDED--GNTALHIAAENGNLEVLKLLL 54
Score = 47.6 bits (114), Expect = 2e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
TAL AA G V+ LL KG + ++ GN+ L +AA G+L V++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 47.2 bits (113), Expect = 2e-07
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
T L A GR E+V+ LL +G + + T L +AA G + ++KLLL
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 44.9 bits (107), Expect = 2e-06
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
G T L AA +G ++V LL D+ E +T L +A G EV++LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54
Score = 43.4 bits (103), Expect = 6e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
TAL A GR E+V LL++ ++ + G T L AA G +EV ++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 29.9 bits (68), Expect = 0.37
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 6 ETESNHDTALTLACAGGHEELVELLL 31
T+ + +TAL +A G+ E+++LLL
Sbjct: 29 RTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 61.0 bits (148), Expect = 1e-09
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 5/181 (2%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ N + L + G+ L+E LL D + D KG TPL +AA+ G++ V +LL
Sbjct: 520 HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK 579
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
H ++ + + +T L A S +++ +L + + D L AA +
Sbjct: 580 HACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL--LCTAAKRNDLT 636
Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
+K LL G ++S G + L +A H V+LL+ G+D++ + +
Sbjct: 637 AMKELLKQGLNVDSE--DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE 694
Query: 186 L 186
L
Sbjct: 695 L 695
Score = 58.3 bits (141), Expect = 7e-09
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 17/198 (8%)
Query: 123 YVNIIKLLLTHGAEI------------NSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
V I+K L H E+ S L+ A G+ A ++ LL
Sbjct: 490 NVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKL 549
Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
D + R T L +A +G + V +LL NV R G T L A S + ++ R
Sbjct: 550 DPDIGDSKGR-TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR 608
Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
+L + + P + L AA + ++ LL +G V+ ++ +G + L +A
Sbjct: 609 ILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA 664
Query: 291 GGHLSVVELLCKHGADID 308
H+ +V LL +GAD+D
Sbjct: 665 EDHVDMVRLLIMNGADVD 682
Score = 57.6 bits (139), Expect = 1e-08
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
EH + + + L AS G +++ LL A+++ G G +PL +AA G+ V
Sbjct: 517 GGEHDDPNMASNLLTVASTGNAALLEELLK--AKLDPDIGDSKGRTPLHIAASKGYEDCV 574
Query: 163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS 222
+LL +++ + + N NTAL A H++ +L + + A L L AA
Sbjct: 575 LVLLKHACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL--LCTAAK 631
Query: 223 GGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKN 278
+ + LL +G +V++ TAL +A + H V LL+ GA V+ N
Sbjct: 632 RNDLTAMKELLKQGLNVDS----EDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685
Score = 55.6 bits (134), Expect = 6e-08
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 31/116 (26%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV------------ 297
T L IAA KG+ V +LL V +++ GN+ LW A + H +
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP 619
Query: 298 ----ELLC---------------KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
+LLC K G ++DS+D++ + L A + HV VR ++
Sbjct: 620 HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI 675
Score = 51.8 bits (124), Expect = 9e-07
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
+ L S G ++E LL + + + TPL +AAS GY + + +LL H ++
Sbjct: 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
R + G + L A H ++L S + + L A + +
Sbjct: 586 IRDAN--GNTALWNAISAKHHKIFRILYHFASISDPHAAGD---LLCTAAKRNDLTAMKE 640
Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
LL + NV+ G T L A + +V++ R+L+ GADV+
Sbjct: 641 LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683
Score = 46.4 bits (110), Expect = 4e-05
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
+ VG +L D G + + P + S+ LT+A+ G+ +E LL ++ + KG +PL
Sbjct: 507 LNVGDLLGDNGGEHDDPNMASN---LLTVAS-TGNAALLEELLKAKLDPDIGDSKGRTPL 562
Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+AA+ G+ V +L KH ++ +D + L A H K + ++ H A
Sbjct: 563 HIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK-IFRILYHFA 614
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 61.3 bits (148), Expect = 1e-09
Identities = 52/232 (22%), Positives = 108/232 (46%), Gaps = 17/232 (7%)
Query: 345 EMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 404
+ + + + L K +E K ++A++A ++ N+ L + EE+K+A
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK------AEEAKKAE 1590
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
+AR E K + EKK + +A + EE I+ + ++AE K L ++ EK + E
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE--------ET 516
+ A+ + + ++ + +E+K+KA E ++ EE+E + E + EE +
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Query: 517 EENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKL 568
E + + + EE + +A + E K A +++ +++KKK+
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAE---EAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 59.8 bits (144), Expect = 3e-09
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 12/203 (5%)
Query: 375 QQAERANKNANILLEELD-MEKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEE 432
++A+ A K A ++ D +K EE+K+AA+A K + E EEK +A E+++E
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 433 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEK 488
++A+ A K A + + +K EE K+ A K+ +KK + K EEK
Sbjct: 1375 ----EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDAN--SQASC 546
+KA E +++ EE + E + + E + E + + E +A +A
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 547 SSNEVKTAAPNSRRKDKKKKKLD 569
+ E K A +++ + KKK D
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKAD 1513
Score = 58.2 bits (140), Expect = 9e-09
Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 12/235 (5%)
Query: 334 VNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDM 393
V + D E + + + E + K +E M A+ Q A +A + + D
Sbjct: 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA-HFARRQAAIKAEEA-----RKADE 1282
Query: 394 EKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
K EE K+A +A+K E+KK + +KK E+ K +E ++ AK ++A+ A K A
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEA 1341
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
+ + K E+ E+ + + +K+E K+KA +++ EE+ + E + +
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
Query: 513 EEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
E++ + +++ + + + +E + +A +E K A +++ D+ KKK
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKA----DEAKKKAEEAKKADEAKKK 1452
Score = 57.1 bits (137), Expect = 2e-08
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 16/160 (10%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKR--ERKKQKKLEKK-EEKRKAME 428
A ++A+ A K A + + +K EE+K+A +A+K+ E KK ++ +KK EE +KA E
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
Query: 429 EEEEVIRVAK----NQQAERANKNANILLEELDMEKWREESKRAAQARK-------RERK 477
+++ K ++AE A K A+ + + +K +E+K+A +A+K E K
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Query: 478 KQKKLEKKEEKRKAME--EEEEEEEEVEVQEVEGEMMEEE 515
K + +K EEK+KA E + EE ++ E ++ E EE
Sbjct: 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Score = 55.5 bits (133), Expect = 8e-08
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 18/207 (8%)
Query: 371 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEKRKA 426
K ++ ++A + I E +K E+ K+A +A+K E ++K E + EE +KA
Sbjct: 1646 KKKAEELKKAEEENKIKAAEE-AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Query: 427 ME----EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
E E EE + + ++AE NK I EE E E+ K+A +A+K E +K+K
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENK---IKAEEAKKEA-EEDKKKAEEAKKDEEEKKKIA 1760
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEV----EGEMMEEETEENDMHSSGGGRGEG-EEGDSG 537
K+E+ K EE +E+E V +E+ E ME + + D+ + EG +EG+
Sbjct: 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820
Query: 538 IDANSQASCSSNEVKTAAPNSRRKDKK 564
I+ + + S+ + + N + ++
Sbjct: 1821 INDSKEMEDSAIKEVADSKNMQLEEAD 1847
Score = 55.1 bits (132), Expect = 8e-08
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARK-------RERKKQKKLEKKEEKRKA- 426
++AE A K A+ + + +K +E+K+A +A+K E KK + +K EEK+KA
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Query: 427 ----MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
EE ++ K ++A++A ++ N+ L + + K EE++ + E +K+ K
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Query: 483 E---KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET----------EENDMHSSGGGRG 529
E K EE + EE ++ EEE + E + EE EEN + ++ +
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
Query: 530 EGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLD 569
E+ +A + + K AA +++ ++ KK +
Sbjct: 1670 AEEDKKKA----EEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
Score = 54.8 bits (131), Expect = 1e-07
Identities = 36/153 (23%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
I+ + ++AE K L ++ EK + E + A+ + + ++ + +E+K+KA E
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Query: 429 ----EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
EE+E ++ K A L ++ EK + E + A+ + + ++ K E
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+E+K+KA E +++EEE+ ++ ++ E ++ E
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
Score = 53.2 bits (127), Expect = 4e-07
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 7/202 (3%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
A ++ E A K A+ ++ + +K +E+K+ A+ K KK +L+K +K +E +
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK---KKADELKKAAAAKKKADEAK 1424
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR--ERKKQKKLEKKEEKR 489
+ + + ++A+ A K A + + +K EE+K+A +A+K+ E KK + +KK E+
Sbjct: 1425 K--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSN 549
K +E +++ EE + + E + E ++ D + +E +A
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
Query: 550 EVKTAAPNSRRKDKKKKKLDMR 571
E K A ++ ++ KK + +
Sbjct: 1543 EEKKKADELKKAEELKKAEEKK 1564
Score = 52.8 bits (126), Expect = 4e-07
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 19/215 (8%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK--EEKRKAME-- 428
+ AE A A +E + EE AA+ +K E KK+ KK EEK+KA E
Sbjct: 1341 AKKAAEAAKAEAEAAADEA---EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Query: 429 --EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE--- 483
EE+ + + ++A A K A+ ++ + +K +E+K+ A+ K+ + +KK E
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Query: 484 -------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDS 536
K EE +KA E +++ EE + E + + E + + ++ + + + +E
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 537 GIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
+A E A +++ ++KKK +++
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Score = 52.8 bits (126), Expect = 5e-07
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
E L K +E + K ++AE K + E + + E + A+ K++ ++ KK
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 417 LE----KKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR 472
E K E K EE + K ++AE K + E + + EE+K+ A+
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
K++ ++ KK +++E+K+ A ++EEE++ E+++ + ++EEE +E D
Sbjct: 1743 KKKAEEAKK-DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
Score = 52.5 bits (125), Expect = 6e-07
Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK---EEKRKAMEEEE 431
++AE A K + + +K E K+A +A+K + K+K E K +E +KA E ++
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER-KKQKKLEKKEEKRK 490
+ K ++A++A++ ++ + K +E+K+A + +K + KK ++L+K EEK+K
Sbjct: 1511 KADEAKKAEEAKKADE-----AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Query: 491 AMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNE 550
A EE ++ EE+ + + E ++ E E + +A + E
Sbjct: 1566 A-EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624
Query: 551 VKTAAPNSRRKDKKKKK 567
+K A ++ ++ KKK
Sbjct: 1625 LKKAEEEKKKVEQLKKK 1641
Score = 49.8 bits (118), Expect = 4e-06
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 398 EESKRAAQARK-RERKKQKKLEKKEEKRKAMEE---------EEEVIRVAKNQQAERANK 447
EE ++A +ARK + KK + ++K EE +K EE EE+ + + + A A +
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
Query: 448 NANILLEE---LDMEKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
A I EE D K EE K+A +A+K E+KK + +KK E+ K +E +++ EE +
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
Query: 504 VQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDK 563
+ + EE ++ + +E ++ + A E K A +++K +
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
Query: 564 KKKKLD 569
+KKK D
Sbjct: 1389 EKKKAD 1394
Score = 49.4 bits (117), Expect = 5e-06
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 343 DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
+Q + + E L K +E + + + ++AE K A + + EK E+ +
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
++ ++ KK E +E+K+ ++ E K ++A++ + EE ++
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE-- 1753
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
EE K+ A +K E KK +++ K EK +EEE +EE+E EV+
Sbjct: 1754 EEKKKIAHLKKEEEKKAEEIRK--EKEAVIEEELDEEDEKRRMEVD 1797
Score = 44.4 bits (104), Expect = 2e-04
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE---EEVIRVAKNQQAERANKNAN 450
E E +A +A+K E K ++ K EE +K E+ EE + ++AE A K +
Sbjct: 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED 1150
Query: 451 ILLEEL----------DMEKWREESKRAAQARKRER-KKQKKLEKKEEKRKA-------- 491
E+ + + E++K+A ARK E +K ++L K E+ RKA
Sbjct: 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE 1210
Query: 492 ---MEEEEEEEEEVEVQEV----EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
EE + E+ + + V E + EE ++ + + + EE A QA
Sbjct: 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
Query: 545 SCSSNEVKTAAPNSRRKDKKK 565
+ + E + A + ++KKK
Sbjct: 1271 AIKAEEARKADELKKAEEKKK 1291
Score = 30.9 bits (69), Expect = 2.3
Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK--------- 419
K ++A++ + EE ++ EE K+ A +K E KK +++ K
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDE--EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
Query: 420 --KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
+E++++ ME ++++ + N L+ E K A ++ + +
Sbjct: 1785 LDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLE 1844
Query: 478 KQKKLEK----------KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
+ EK ++ ++A +E++ +E + +E+E E+ +++D+
Sbjct: 1845 EADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 58.0 bits (140), Expect = 9e-09
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
LAASG V ++LLT GA+ N R G +PL +A NGH V++LL+ G+D +
Sbjct: 89 LAASGDAVGA-RILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADPTL-L 144
Query: 177 ETNRNTALTLACFQGRHEVVSLLL 200
+ + T L LA G EVV LL
Sbjct: 145 DKDGKTPLELAEENGFREVVQLLS 168
Score = 56.8 bits (137), Expect = 2e-08
Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 20 AGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD 79
A G +LL+ GAD RD G TPL +A GH +VV +LL AD ++
Sbjct: 91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGK 149
Query: 80 TPLSLACSGGRYEVVELLL 98
TPL LA G EVV+LL
Sbjct: 150 TPLELAEENGFREVVQLLS 168
Score = 55.3 bits (133), Expect = 6e-08
Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 220 AASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVE 275
AASG V R+LL GAD P+ RD T L IA GH + V +LL GA
Sbjct: 90 AASGDAVGA-RILLTGGAD------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT 142
Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKH 303
+ +K G +PL LA G VV+LL +H
Sbjct: 143 LLDKDGKTPLELAEENGFREVVQLLSRH 170
Score = 47.2 bits (112), Expect = 2e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
A +G ++LL G+D N + + + T L +AC G +VV +LL+ A+ K G
Sbjct: 90 AASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148
Query: 214 LTPLMEAASGGYVEVGRVLL-----DKGADVNAPP 243
TPL A G+ EV ++L NA P
Sbjct: 149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKP 183
Score = 46.8 bits (111), Expect = 3e-05
Identities = 26/54 (48%), Positives = 32/54 (59%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
T L +ACA GH ++V +LL GAD DK G TPL LA G +VV +L H
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170
Score = 45.3 bits (107), Expect = 7e-05
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 50 LAATAGHDKV-VDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
LAA+ D V ILL AD + + TPL +AC+ G +VV +LL GA+ +
Sbjct: 89 LAASG--DAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145
Query: 109 VSDYTPLSLAASGGYVNIIKLLLTHGAE 136
TPL LA G+ +++LL H
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRHSQC 173
Score = 39.1 bits (91), Expect = 0.007
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
+LL+ GA ++ G +PL +A GH+ VV +L + GAD D + L A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEE 157
Query: 324 KGHVKAVRWMVNH 336
G + V+ + H
Sbjct: 158 NGFREVVQLLSRH 170
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 57.0 bits (138), Expect = 2e-08
Identities = 58/231 (25%), Positives = 83/231 (35%), Gaps = 49/231 (21%)
Query: 15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM---- 70
A + EL ELLL+ D L+ A + + V+ +L H
Sbjct: 57 FVAAIENENLELTELLLNLSCRGAVGDT-----LLHAISLEYVDAVEAILLHLLAAFRKS 111
Query: 71 --------EAQSERTKD-TPLSLACSGGRYEVVELLLTRGAN------------KEHRNV 109
+ SE T T L LA YE+V+LLL RGA+ + +
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171
Query: 110 SDYT--PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV----- 162
+ PL+ AA G +I+ LL A+I T LG + L L M A
Sbjct: 172 FYHGESPLNAAACLGSPSIVALLSEDPADI--LTADSLGNTLLHLLVMENEFKAEYEELS 229
Query: 163 ----KLLLDMG--SDINAQIE--TNRN--TALTLACFQGRHEVVSLLLDRK 203
L + + ++E N T L LA +GR + L L K
Sbjct: 230 CQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK 280
Score = 44.7 bits (106), Expect = 1e-04
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 48 LILAATAGHDKVV-DILLNHKADMEAQSERTKDTPLSLACSGGRY-EVVELLLTRGANKE 105
+ AA G V L K +R + L +A E+ ELLL
Sbjct: 21 FLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLL-----NL 75
Query: 106 HRNVSDYTPLSLAASGGYVNIIKLLLTH----------GAEINSRTGSKL--GISPLMLA 153
+ L A S YV+ ++ +L H N + S+ GI+ L LA
Sbjct: 76 SCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLA 135
Query: 154 AMNGHTAAVKLLLDMGSDINA 174
A + VKLLL+ G+ + A
Sbjct: 136 AHRQNYEIVKLLLERGASVPA 156
Score = 36.6 bits (85), Expect = 0.037
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 21/99 (21%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G+T L AA E+ ++LL++GA V A + F + S+G
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPA----------------RACGDF--FVKSQGV 169
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
G SPL AA G S+V LL + ADI + D
Sbjct: 170 DSF---YHGESPLNAAACLGSPSIVALLSEDPADILTAD 205
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 47.9 bits (115), Expect = 8e-08
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
GN+PL LAA GHL VV+LL + GAD++++D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 45.6 bits (109), Expect = 5e-07
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDK 42
+ +T L LA GH E+V+LLL GAD+ RDK
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 44.9 bits (107), Expect = 1e-06
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
G +PL LAA NGH VKLLL+ G+D+NA+
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 42.2 bits (100), Expect = 9e-06
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
G TPL AA G++EV ++LL+ GADVNA
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNA 30
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
TPL LAA G++ ++KLLL GA++N+R
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQ 73
G TPL LAA GH +VV +LL AD+ A+
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRN 108
+TPL LA G EVV+LLL GA+ R+
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
+ NT L LA G EVV LLL+ A+V R K
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNK 279
+T L +AA GH V+LLL GA V ++K
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 54.6 bits (131), Expect = 1e-07
Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 3/199 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+N++ E+ K L+ L E+ +S+ R++ ++K E ++E +K +E +
Sbjct: 273 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELK 332
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ + + E EE + E+ + ++ Q + K+K ++
Sbjct: 333 KEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEE---NDMHSSGGGRGEGEEGDSGIDANSQASCSS 548
++EEE E + E +E + + E EE + E E
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452
Query: 549 NEVKTAAPNSRRKDKKKKK 567
K A + K + KK
Sbjct: 453 ELEKQALKLLKDKLELKKS 471
Score = 47.3 bits (112), Expect = 2e-05
Identities = 57/298 (19%), Positives = 104/298 (34%), Gaps = 15/298 (5%)
Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
V K A A V S K EL L + + PL A
Sbjct: 539 VANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPA-RTFVLLDPLLKLPLKSIAV 597
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYI 350
+ L + A +++ ++ K + ++ K +E
Sbjct: 598 LEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLE------SAKAKESGLRK 651
Query: 351 QTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 410
++ L +K + + + + K AE+ + + R+E + + R +E
Sbjct: 652 GVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKE 711
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVI-RVAKNQQAERANKNANIL------LEELDMEKWRE 463
K+ KLEK+E ++E ++ I K + + K EE + +
Sbjct: 712 ELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELS 771
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
++ + + +K K E+KEEK KA EEE EE E++E + EE+
Sbjct: 772 LKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEE-ELKEEAELLEEEQLLIEQE 828
Score = 46.5 bits (110), Expect = 3e-05
Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 350 IQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 409
+ +E DK E ++ ++ E K+ EE + + ++ +
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDME---------K 460
+ +K K E+KEEK KA EEE + ++AE + ++ +E ++ +
Sbjct: 783 KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 842
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+EE K A + + ++++ K+E ++ + +EEE EE+ E+E + +E+ E+ +
Sbjct: 843 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 902
Query: 521 M 521
+
Sbjct: 903 L 903
Score = 43.4 bits (102), Expect = 4e-04
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
A ++ +L + K A+ + ++KLE +EE ++ +
Sbjct: 183 TENLAELIIDLEELKLQ----ELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEE 238
Query: 436 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
Q ++ I + ++EK EE +E +K+KKL+++E K A EEE
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEK-EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 496 EEEEEEVEVQEVEGEMMEEETEEN 519
E + E ++++ + + E+ E
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESE 321
Score = 41.9 bits (98), Expect = 0.001
Identities = 28/137 (20%), Positives = 58/137 (42%)
Query: 387 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
L+EE + + ++ + K+Q K + + K E EE + +
Sbjct: 179 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEE 238
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+ + D ++ E SK+ + + + K K+EEK K ++EEE + E +E
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298
Query: 507 VEGEMMEEETEENDMHS 523
++ E+++ E + D
Sbjct: 299 LKSELLKLERRKVDDEE 315
Score = 40.3 bits (94), Expect = 0.003
Identities = 34/193 (17%), Positives = 75/193 (38%), Gaps = 11/193 (5%)
Query: 375 QQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
++ + + EE++ K E + +E K+++K +K +E+ + +EE
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
++ + ER E+L + + +++E ++ + E KE + K
Sbjct: 298 ELKSELLKLER---RKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREA 354
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKT 553
EEEEEE+ ++QE E+ EE + + + + E K
Sbjct: 355 EEEEEEQLEKLQEK-----LEQLEEELLAKK--KLESERLSSAAKLKEEELELKNEEEKE 407
Query: 554 AAPNSRRKDKKKK 566
A ++++
Sbjct: 408 AKLLLELSEQEED 420
Score = 40.3 bits (94), Expect = 0.003
Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 14/189 (7%)
Query: 343 DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
++E Q KE + + + AE + + + ++ + +
Sbjct: 819 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE 878
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
+ +K + + + K EK++E++K +EEE + + + ++ E + A + L E
Sbjct: 879 ELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEP 938
Query: 463 EESKRAAQARKR---------ERKKQKKLEKKEEKRK-----AMEEEEEEEEEVEVQEVE 508
EE K E + ++ L KEE E EE+EE + + +
Sbjct: 939 EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998
Query: 509 GEMMEEETE 517
+ EE+ E
Sbjct: 999 ERLEEEKKE 1007
Score = 38.8 bits (90), Expect = 0.008
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 2/152 (1%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
+ + + A + L EE+ E+ +E + + ++ K + K+E++++ ++E E
Sbjct: 846 EQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEE-KKELE 904
Query: 433 VIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
N E+ N+ + EE + K+ E + E++K++ +++EE+R
Sbjct: 905 EESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNK 964
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
+EE E E+E N
Sbjct: 965 RLLLAKEELGNVNLMAIAEFEEKEERYNKDEL 996
Score = 36.9 bits (85), Expect = 0.038
Identities = 29/164 (17%), Positives = 68/164 (41%), Gaps = 7/164 (4%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ------QAERANKNANILLEELDMEKWRE- 463
RKK+++L+K E+ + + E + K Q QA++A + + + E+
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLY 229
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
+ + ++ +++EE + +E E+EEE + E + E+E + +
Sbjct: 230 LDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEEL 289
Query: 524 SGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+ E E + + ++K + ++ +K+ KK
Sbjct: 290 KLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK 333
Score = 36.5 bits (84), Expect = 0.048
Identities = 30/168 (17%), Positives = 60/168 (35%), Gaps = 17/168 (10%)
Query: 366 SMVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
N E+ N+ + EE + K+ E E ++ EK++E+
Sbjct: 903 LEEESQKDNLLEEKENEIEERIAEEAIILLKYESE--------PEELLLEEADEKEKEED 954
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL-- 482
EEEE R+ + E N N + E + E+ + + + + E+K+ +
Sbjct: 955 NKEEEEERNKRL-LLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREII 1013
Query: 483 -EKKEEKRKAMEEEE----EEEEEVEVQEVEGEMMEEETEENDMHSSG 525
E + ++ +E + E+ G + +D S G
Sbjct: 1014 EETCQRFKEFLELFVSINRGLNKVFFYLELGGSAELRLEDSDDPFSGG 1061
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 53.3 bits (128), Expect = 2e-07
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 58 KVVDILLNHKADMEAQSERTKDTPLSLACSG-----GRYEVVELLLTRGANKEHRNVSDY 112
+V + +N A++ + TPL S ++V++L+ GA+ +N
Sbjct: 52 DIVKLFINLGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110
Query: 113 TPLSLAASGGYVN---IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA---AVKLLL 166
TPL S GY+N I+ ++ +GA+ K G + L + + H +KLLL
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLL--DKDGFTMLQVYLQSNHHIDIEIIKLLL 168
Query: 167 DMGSDINAQIETNRNTALTLACF 189
+ G DIN N+ TL C+
Sbjct: 169 EKGVDIN--THNNKEKYDTLHCY 189
Score = 43.3 bits (102), Expect = 3e-04
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 162 VKLLLDMGSDINAQIETNRNTAL-TLAC----FQGRHEVVSLLLDRKANVEHRAKTGLTP 216
VKL +++G+++N ++ +T L T+ ++ ++V +L++ A++ + G TP
Sbjct: 54 VKLFINLGANVNG-LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETP 112
Query: 217 LMEAASGGYV---EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH---CRFVELLLSK 270
L S GY+ E+ +++ GAD + T L + H ++LLL K
Sbjct: 113 LYCLLSNGYINNLEILLFMIENGADTTL--LDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170
Query: 271 GAQVEVKNKK 280
G + N K
Sbjct: 171 GVDINTHNNK 180
Score = 39.8 bits (93), Expect = 0.004
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPL--MLAAMNGHTAA---VKLLLDMGSDINAQIET 178
+I+KL + GA +N +PL +L+ + + VK+L++ G+DIN +
Sbjct: 51 TDIVKLFINLGANVNGLDNEY--STPLCTILSNIKDYKHMLDIVKILIENGADINKK--- 105
Query: 179 NRNTALTLAC-----FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY---VEVGR 230
N + L C + E++ +++ A+ K G T L + +E+ +
Sbjct: 106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIK 165
Query: 231 VLLDKGADVN 240
+LL+KG D+N
Sbjct: 166 LLLEKGVDIN 175
Score = 39.4 bits (92), Expect = 0.005
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 25 ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL---NHKADMEAQSERTKDTP 81
++V++L+ GADI ++ G TPL + G+ ++ILL + AD + T
Sbjct: 90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGF-TM 148
Query: 82 LSLACSGGRY---EVVELLLTRGAN-KEHRNVSDYTPLSLAASGGY----VNIIKLLLTH 133
L + + E+++LLL +G + H N Y L +I+KL + +
Sbjct: 149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN 208
Query: 134 GAEIN 138
G IN
Sbjct: 209 GFIIN 213
Score = 37.5 bits (87), Expect = 0.018
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTAL-TIAAD----KGHCRFVELLLSKGAQVEVKNKK 280
++ ++ ++ GA+VN + + T L TI ++ K V++L+ GA + KN
Sbjct: 51 TDIVKLFINLGANVNG--LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSD 108
Query: 281 GNSPLW-LAANG--GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
G +PL+ L +NG +L ++ + ++GAD D + L + H
Sbjct: 109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH 157
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 51.9 bits (124), Expect = 3e-07
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 91 YEVVELLLTRGANKE----HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
++++ +L GA+ E S PL A + KLL+ +GA++N R +
Sbjct: 46 TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN-RYAEEAK 104
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
I+PL ++ ++G +++LL G+DIN Q
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADINIQT 134
Score = 44.2 bits (104), Expect = 1e-04
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 25 ELVELLLSRGAD--IEH--RDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT 80
++++ +L GAD + PLI A +D +L+ + AD+ +E K T
Sbjct: 47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106
Query: 81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
PL ++ G + +E+LL+ GA+ + TP+ LA
Sbjct: 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144
Score = 43.4 bits (102), Expect = 2e-04
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 59 VVDILLNHKADMEAQ---SERTKDTPLSLACSGGRYEVVELLLTRGAN-KEHRNVSDYTP 114
++D +L AD EA SE +K PL A + +LL+ GA+ + + TP
Sbjct: 48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107
Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAM 155
L ++ G + +++LL++GA+IN +T ++P+ LA M
Sbjct: 108 LYISVLHGCLKCLEILLSYGADINIQTNDM--VTPIELALM 146
Score = 41.9 bits (98), Expect = 6e-04
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 225 YVEVGRVLLDKGADVNAPPVPS--SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
Y ++ +L GAD AP S S+ L A D + +LL+ GA V N+
Sbjct: 45 YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV---NRYAE 101
Query: 283 ----SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
+PL+++ G L +E+L +GADI+ Q N V+ + A
Sbjct: 102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM 146
Score = 38.4 bits (89), Expect = 0.008
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 123 YVNIIKLLLTHGAEINSRTGSKLG--ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
Y +II +L GA+ + +PL+ A + A KLL+ G+D+N E +
Sbjct: 45 YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK 104
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
T L ++ G + + +LL A++ + +TP+
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPI 141
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 45.4 bits (108), Expect = 1e-06
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA 187
LL HG + T G +PL LAA G V+ LL G D+N + +++ TAL LA
Sbjct: 1 LLEHGPIDLNATDGN-GNTPLHLAAKYGALELVQWLLKPGVDLNLR-DSDGLTALDLA 56
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
LL H ++ +TPL LA G E+V+ LL G + R+ T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 42.7 bits (101), Expect = 1e-05
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 30 LLSRG-ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85
LL G D+ D G TPL LAA G ++V LL D+ + T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG-LTALDLA 56
Score = 40.8 bits (96), Expect = 5e-05
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 96 LLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA 153
LL + + + TPL LAA G + +++ LL G ++N R G++ L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD--GLTALDLA 56
Score = 40.0 bits (94), Expect = 1e-04
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILA 51
T L LA G ELV+ LL G D+ RD G T L LA
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 38.9 bits (91), Expect = 3e-04
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 165 LLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
LL+ G + N NT L LA G E+V LL ++ R GLT L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 38.5 bits (90), Expect = 4e-04
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 198 LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA 255
LL ++ G TPL AA G +E+ + LL G D+N S TAL +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL--RDSDGLTALDLA 56
Score = 37.3 bits (87), Expect = 8e-04
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 267 LLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR 313
LL G + + GN+PL LAA G L +V+ L K G D++ +D+
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD 48
Score = 33.5 bits (77), Expect = 0.023
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 232 LLDKG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
LL+ G D+NA + +T L +AA G V+ LL G + +++ G + L LA
Sbjct: 1 LLEHGPIDLNA--TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 31.9 bits (73), Expect = 0.083
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 299 LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
LL D+++ D + L A + G ++ V+W++
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP 38
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 48.9 bits (117), Expect = 1e-06
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
+K KK+ KLE+K+ +R+ E EEE K + +R + +E + + E K
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGE-----RKEEEELEEEREKK 55
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+ + RK ++ +K +++ EK K+ EEE + + E
Sbjct: 56 KEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEE 97
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+K KK+ KLE+K+ +R+ E EEEE EE + E + E +E EE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEE 47
Score = 34.7 bits (80), Expect = 0.079
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 462 REESKRAAQARKRERKKQKKLE--------KKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
KRA K+ R++Q++ E K EEKR+ +EEEE EE ++ E E +
Sbjct: 3 IGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 514 EETEE 518
E E+
Sbjct: 63 EREEQ 67
Score = 34.3 bits (79), Expect = 0.083
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 419 KKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK 478
K K++A EE++ A + EE E+ + E KR + ++ E +
Sbjct: 2 KIGAKKRAKLEEKQ------------ARRQQREAEEEEREERKKLEEKREGERKEEEELE 49
Query: 479 QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
+++ +KKEE+ + EE+ +E+ E ++++ + EE + + +
Sbjct: 50 EEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSA 94
Score = 31.6 bits (72), Expect = 0.67
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ ++A + EE E+ + E KR + ++ E ++++ +KKEE+ + EE+
Sbjct: 8 RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
Query: 432 E 432
Sbjct: 68 A 68
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 50.9 bits (122), Expect = 2e-06
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 356 KELLDKCQECSMVIRVAKNQ------QAERANKNANILLEELDME------KWREESKRA 403
+ + + ++ + Q QAE+A + + E ++E K +E K
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE--------E 455
+ + + +++LE+ +E+ + E+E E ++ + E + LLE E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM-EEEEEEEEEVEVQEVEGEMMEE 514
++ RE + + ++ ++L++K E K EE E EE+E E E +E
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Query: 515 ETEE 518
E EE
Sbjct: 362 ELEE 365
Score = 48.2 bits (115), Expect = 1e-05
Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQ 414
+ L D +E + + Q E + A + E ++ EE + + + + Q
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757
Query: 415 KKLEKKEEKRKAMEEE--------EEVIRVAKNQQAERANKNANILLEELDMEKWREE-- 464
++LE+ EE+ +++EE EE+ + Q E + E ++ E
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817
Query: 465 --SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
+R + + + ++++E+ EEK +EEE EE E+ E++E++ E+ E E E+ ++
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK-ELEELKEELEELEAEKEELE 876
Query: 523 SS 524
Sbjct: 877 DE 878
Score = 44.7 bits (106), Expect = 1e-04
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 2/151 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEK--WREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ ++ + +EEL+ E RE + + ++ ++L++K E K E
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
E E + Q + L E+L E A + + + E + E
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ E E EE +E E ++EE +E +
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELE 431
Score = 40.9 bits (96), Expect = 0.002
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 10/156 (6%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM---EE 429
+ E + L E+++ K E + + + + K+E + K EE
Sbjct: 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLE 483
EE+ + + AE + A I E ++++ ES R ER + ++
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKR-EIESLEERLERLSERLEDLKEELKELEA 432
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
+ EE + +EE EE EE+E Q E +E E
Sbjct: 433 ELEELQTELEELNEELEELEEQLEELRDRLKELERE 468
Score = 40.9 bits (96), Expect = 0.002
Identities = 38/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 356 KELLDKCQECSMVIRVAKNQ----QAERANKNANILLEELDMEKWREESKRAAQARKRER 411
++L + +E + + + Q + E + K +EE + + R+ +
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD--MEKWREESKRAA 469
++ ++LE++ E+ + + E + Q+ ER + L EE++ EK E +
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852
Query: 470 QARKRERKKQKKLEKKEEKRKAME------EEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ K + +++LE+ E +++ +E EEE+EE E E++E+E E+ E + E +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910
Score = 40.1 bits (94), Expect = 0.004
Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 1/185 (0%)
Query: 354 NDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK 413
KE L++ + + + E + L L+ + E+ R A E +
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE-LEAEL 392
Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
+ + EE ++ +E EE + + + + + E +++ EE + +
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEE 533
+ ++ + K+ E+ A +EE + E E+ +E + E E+ E
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512
Query: 534 GDSGI 538
G G+
Sbjct: 513 GLPGV 517
Score = 39.3 bits (92), Expect = 0.006
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK---LEKKEEKRKAME 428
+ ++ E + LEEL+ E E + A R+ E +Q++ ++ EE + +E
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQKKLEKKEE 487
E EE + + + E + + E ++E +EE + + + + +++L + E
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898
Query: 488 KRKAMEEE--------EEEEEEVEVQEVEGEMMEEETEEND 520
+ ++EE EE E ++E EVE +EEE EE
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939
Score = 38.9 bits (91), Expect = 0.008
Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE-------KKEEKRKAM 427
++ E + L+EL+ E E + + E + +K E +EEK +
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER--------KKQ 479
EE E+ + + + + LEEL+ + R E + + E + +
Sbjct: 891 EELRELES--ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948
Query: 480 KKLEKKEEKRKAME------EEEEEEEEVEVQEVEGEMMEEETEEND 520
+++E+ EE+ +A+ EE EE E +E++ + + E +
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEK 995
Score = 38.9 bits (91), Expect = 0.008
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 4/156 (2%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
++N+++ A K LEE E + K + + + + + + EE R+ +EE E
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715
Query: 432 EVIRVAKNQ--QAERANKNANILLEELDMEKWR-EESKRAAQARKRE-RKKQKKLEKKEE 487
+ K + E + LEEL+ E EE Q R E ++ + LE+
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
K K EE EE+ + +E+E E E E + +
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811
Score = 38.2 bits (89), Expect = 0.016
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 17/166 (10%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
++ E A + + L EL+ + R E E ++ + EK +E + +EE E
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE-EKLDELEEELEELE 855
Query: 432 EVIRVAKNQ----QAERANKNANI------------LLEELDMEKWREESKRAAQARKRE 475
+ + K + +AE+ + L EL+ E + + + E
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ K + E + EE EEE E+ E+E E+ E E +
Sbjct: 916 ELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961
Score = 36.6 bits (85), Expect = 0.040
Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
++ ++R+ + ++KLE+ EE E E + +Q E+ + A +++
Sbjct: 168 SKYKERKEEAERKLERTEEN----LERLEDLLEELEKQLEKLERQAEKAERYQELKAELR 223
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E A + ++ +K+LE+ EE+ +EEE EE +E E++E E E+ E ++E ++
Sbjct: 224 E-LELALLLAKLKELRKELEELEEELSRLEEELEELQE-ELEEAEKEIEELKSELEEL 279
Score = 36.2 bits (84), Expect = 0.052
Identities = 25/130 (19%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKR-------KAMEEEEEVIRVAKNQQAERANKNANILL 453
+R +A ++ + ++ LE+ E+ + +E + E + +AE +LL
Sbjct: 172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL 231
Query: 454 EELD--MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+L ++ E + ++ + + Q++LE+ E++ + + E EE E++E++ E+
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE-LKSELEELREELEELQEEL 290
Query: 512 MEEETEENDM 521
+E + E ++
Sbjct: 291 LELKEEIEEL 300
Score = 32.8 bits (75), Expect = 0.63
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 29/149 (19%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR-- 435
E+ + LEEL+ EK E + + + + +++L + E + ++EE E +R
Sbjct: 855 EKELEELKEELEELEAEK-EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913
Query: 436 ----VAKNQQAERANKNANILLEELD----MEKWREESKRA------------------A 469
AK ++ E LEE + E +R
Sbjct: 914 LEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYE 973
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEE 498
+ +R + + + E EE ++ + E EE
Sbjct: 974 EVEERYEELKSQREDLEEAKEKLLEVIEE 1002
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 50.7 bits (121), Expect = 2e-06
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
ES + + K + K++KK +K++ K + + + + K E+ +
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK--------- 150
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
EK EE + + +KRER + K KK K+K +++E EE + ++ E ++ + E
Sbjct: 151 -EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209
Query: 518 ENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
E D++ E EE D + + +E + ++ SRR KK D
Sbjct: 210 EPDVN----EEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPS 259
Score = 43.3 bits (102), Expect = 3e-04
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
K + ++ + K +R ++K ++KE+K + + EE + + + R K
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK------ 177
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
++ + + + E+++Q E + K EE + EE E +E +G+ E
Sbjct: 178 -----PPKKKPPNKKKEPPEEEKQRQAAREAVKGK----PEEPDVNEEREKEEDDGKDRE 228
Query: 514 EETEENDMHSSGGGR 528
T + S
Sbjct: 229 TTTSPMEEDESRQSS 243
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 50.2 bits (120), Expect = 2e-06
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
++K ++K EKKE ++EE E K L+E + E E
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEES-GKRDVILEDESAEPTGLDEDEDED--EPKPSGE 279
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
++ E ++K+ EK++ +K ME+E+E+EE V E E E E E
Sbjct: 280 RSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPP 330
Score = 34.8 bits (80), Expect = 0.11
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 7/133 (5%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME---E 429
K L+E + E E ++ E ++K+ EK++ +K ME E
Sbjct: 250 KRDVILEDESAEPTGLDEDEDED--EPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307
Query: 430 EEEVIRVAKNQQAERANKNAN-ILLEELDMEKWREESKRAAQA-RKRERKKQKKLEKKEE 487
+EE+ V ++ E ++ L + + EK R R R +KK K EE
Sbjct: 308 DEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEE 367
Query: 488 KRKAMEEEEEEEE 500
++ E E
Sbjct: 368 GYLVTKKVYEWES 380
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 50.5 bits (121), Expect = 2e-06
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 385 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
I E ++E R + + ++ + +++LEK EEK + +E E E + KN+ A+
Sbjct: 299 EIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKL 358
Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE--EEEEEEEV 502
+ L E L+ E +E K + ++ E Q+ E+ E A+EE EE EE E
Sbjct: 359 LEERLKELEERLE-ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417
Query: 503 EVQEVEGEMMEEETEE 518
E++E+E E+ E E E
Sbjct: 418 ELEELERELEELEEEI 433
Score = 46.3 bits (110), Expect = 5e-05
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 359 LDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE 418
L++ + + A ++ E + LLEEL+ K + + ++ + ++ + ++L+
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK 572
Query: 419 KKEEKRKAMEEEEEVIRVAKNQQAERANKNANI---------LLEELDMEKWREESKRAA 469
+ E+ + + +E + + + E K + LL+ L++ + E + A
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAE 632
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ + E +K + EE +A EE EE+ E E+ E+ E EE
Sbjct: 633 EELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQL 683
Score = 44.0 bits (104), Expect = 2e-04
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK------KLEKKEEKRKAMEE 429
E E L+ K R + + + ++++ LE+ EEK + +EE
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295
Query: 430 EEEVIRVAKNQQAERANKNANI--LLEEL-----DMEKWREESKRAAQARKRERKKQKKL 482
E I + + + LLE+L +EK E+ ++ + +++ +L
Sbjct: 296 LEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNEL 355
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQ 505
K E+R EE EE E E++
Sbjct: 356 AKLLEERLKELEERLEELEKELE 378
Score = 42.1 bits (99), Expect = 8e-04
Identities = 27/133 (20%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
Q+ ++ + L EL++E+ EE R + + R++ ++LEK+ + + E
Sbjct: 464 GQELPEEHEKELLELYELELEELEEELSREKEEAEL-REEIEELEKELRELEEELIELLE 522
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
+ A ++ E + LLEEL+ K + + ++ + ++ + ++L++ E+ + +
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLR 582
Query: 494 EEEEEEEEVEVQE 506
+EE EE+ +
Sbjct: 583 TRKEELEELRERL 595
Score = 38.6 bits (90), Expect = 0.011
Identities = 40/163 (24%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 354 NDKELLDKCQECSMVIRVAKNQQAERANKNANILLEEL--DMEKWREESKRAAQARK-RE 410
++L + +E + + QQ + + L+EL +E+ R R + + RE
Sbjct: 534 KLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRE 593
Query: 411 RKKQ--KKLEKKEEKRKAMEEEEEVIRVAKN-QQAERANKNANILLEELDMEKWREESKR 467
R K+ KKL++ EE+ +EE + + +++ + E A + LE+L+++ EE +
Sbjct: 594 RLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
AA E+ ++ + E + E ++ EE+ EE+ E++++E E
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696
Score = 38.2 bits (89), Expect = 0.012
Identities = 29/132 (21%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 387 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
L E +E+ +EE + ++ E +++ E +EEK + E + ++ + +
Sbjct: 212 LKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKI 271
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+ + E +E+ E+ +R + +RE ++ ++ E R +EE EE E+++ E
Sbjct: 272 REEELRELERLLEELEEKIERL-EELEREIEELEEEL--EGLRALLEELEELLEKLKSLE 328
Query: 507 VEGEMMEEETEE 518
E +EE+ E+
Sbjct: 329 ERLEKLEEKLEK 340
Score = 37.4 bits (87), Expect = 0.025
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 384 ANILLEELDMEKWREESKRAAQARKRERKKQKKLE---------KKEEKRKAMEEEEEVI 434
IL E +EK+ + S+ + K + K ++LE ++ EE +E+
Sbjct: 157 KEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELK 216
Query: 435 RVAK-NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
++ + ++ E I E + + EE +R + + R + + + + R+ E
Sbjct: 217 KLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIRE--E 274
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEE 518
E E E +E E + E +EE E
Sbjct: 275 ELRELERLLEELEEKIERLEELERE 299
Score = 36.7 bits (85), Expect = 0.040
Identities = 33/157 (21%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK---KLEKKEEKRKA 426
+ K + + + A L+E E + + + E++ ++ +LE+ EE+ K
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435
Query: 427 MEEEEEVIRVAKNQQAERANKNAN--ILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+EE+ + + AE A + +EL E +E + + +++L +
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLE---LYELELEELEEELSR 492
Query: 485 KEEKRKAMEEEEE-EEEEVEVQEVEGEMMEEETEEND 520
++E+ + EE EE E+E E++E E++E E +
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKE 529
Score = 36.3 bits (84), Expect = 0.050
Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
+ + K A +EEL+ + E + +++L++ ++ + EE+EE
Sbjct: 174 ELLKEVIKEAKAKIEELE-GQLSELLE---DIEDLLEALEEELKELKKLEEIQEEQEEEE 229
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK------KLEKKEEK 488
+ + E E L+ K R + + + ++++ LE+ EEK
Sbjct: 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEK 289
Query: 489 RKAMEE-------EEEEEEEVEVQEVEGEMMEEETEE 518
+ +EE EEE E + E E + E+ +
Sbjct: 290 IERLEELEREIEELEEELEGLRALLEELEELLEKLKS 326
Score = 36.3 bits (84), Expect = 0.057
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 6/154 (3%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ + E K LEEL+ E + + + K++ E + EE
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK------KQKKLE 483
EE+ + + + E I E + + + A+ K + +
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+KE E EE EEE+ ++ E E+ EE E
Sbjct: 472 EKELLELYELELEELEEELSREKEEAELREEIEE 505
Score = 35.5 bits (82), Expect = 0.084
Identities = 32/184 (17%), Positives = 74/184 (40%), Gaps = 7/184 (3%)
Query: 348 RYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR 407
KE L++ +E ++ + ER ++ +L E E + +
Sbjct: 577 ELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELE 636
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL---EELDMEKWREE 464
K + E +E + A+EE EE + + + + N + ++E+ EE
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEE 696
Query: 465 SKRAAQARKRERKKQKKLEKKEEK----RKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
++ + + KK ++E+ E+ + +EE ++E E++E E + E+ +
Sbjct: 697 LEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAG 756
Query: 521 MHSS 524
+ +
Sbjct: 757 LRAD 760
Score = 35.1 bits (81), Expect = 0.12
Identities = 30/145 (20%), Positives = 66/145 (45%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
+ E + LLE+++ E + + E +++++ E+ E++ +A+EE +
Sbjct: 186 KIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELE 245
Query: 436 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
K + E + I EL+ K REE R + E +++ + ++ E+ EE
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEE 305
Query: 496 EEEEEEVEVQEVEGEMMEEETEEND 520
E E ++E+E + + ++ E
Sbjct: 306 ELEGLRALLEELEELLEKLKSLEER 330
Score = 35.1 bits (81), Expect = 0.12
Identities = 21/124 (16%), Positives = 54/124 (43%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
E + + +++L +++E+ + EE EE+ + + + E + +
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+E+ E+ + + + ++K + + KEE R+ + +E +E +E + EE E
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590
Query: 518 ENDM 521
+
Sbjct: 591 LRER 594
Score = 33.2 bits (76), Expect = 0.52
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 370 RVAKNQQAERANKNANILLEELD--MEKWREESKRAAQARKRERKKQKKLEKKE--EKRK 425
R+ + ++ + EEL+ E+ +E K+ + +R + ++ L+ E E
Sbjct: 567 RLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAEN 626
Query: 426 AMEEEEEVIRVAKNQQAERANKNANI--LLEEL--DMEKWREESKRAAQARKRERKKQKK 481
+EE EE + + +A + LEEL +E+ E +R Q + E + ++K
Sbjct: 627 ELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEK 686
Query: 482 LE----KKEEKRKAMEE-EEEEEEEVEVQEVEGEMMEEETE 517
LE +EE + EE EE ++ E++++ E+ + E
Sbjct: 687 LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
Score = 32.8 bits (75), Expect = 0.68
Identities = 26/152 (17%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 343 DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
++ +++ + + EL + E +++ + + L + +E+ E+ +
Sbjct: 606 EERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEE 665
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
+RE ++ + E+ EEK + +E+ EE + + + E + E +E+
Sbjct: 666 LEAEIRRELQRIENEEQLEEKLEELEQLEEEL---EQLREELEELLKKLGEIEQLIEELE 722
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+ +K K +K LE EE R+ + +
Sbjct: 723 SRKAELEELKKELEKLEKALELLEELREKLGK 754
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 49.4 bits (119), Expect = 4e-06
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 368 VIRVAKNQQAERANKNANIL---LEELDME---KWRE-ESKRAAQARKRERKKQKKLEKK 420
+I AK E K N L LEEL+ E K E E+ + +E ++KK + +
Sbjct: 503 IIEEAKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
EE+ K +EE E+ + A + + A++ L + ++ +ARKR K +
Sbjct: 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621
Query: 481 KLEKKEEKRKAMEEEEEEEEEVEV 504
K EKK++K+K +EE + +EV+
Sbjct: 622 KKEKKKKKQKEKQEELKVGDEVKY 645
Score = 40.6 bits (96), Expect = 0.002
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 431 EEVIRVAKNQQAERANKNANIL---LEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
E +I AK E K N L LEEL+ E ++++ A K K +++LE+K+E
Sbjct: 501 ENIIEEAKKLIGEDKEK-LNELIASLEELEREL-EQKAEEAEALLKEAEKLKEELEEKKE 558
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEE 514
K + E++ EE E E Q+ E +E
Sbjct: 559 KLQEEEDKLLEEAEKEAQQAIKEAKKE 585
Score = 36.7 bits (86), Expect = 0.035
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 421 EEKRKAMEEE----EEVIR--VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 474
EE +K + E+ E+I ++ E+ + A LL+E EK +EE + + +
Sbjct: 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEA--EKLKEELEEKKEKLQ- 561
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E + + E ++E ++A++E ++E +E+ + + +
Sbjct: 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 49.2 bits (118), Expect = 5e-06
Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEVIRVAKNQQAERANKNA-- 449
M++ +SK K ER+K K E+ E+ R+ ++++ ++++ + + +
Sbjct: 179 MKEVIAKSKF----YKAERQKAK--EEDEDLREELDDDFKDLMSLLRTVKPPPKPPMTPE 232
Query: 450 ------NILLEELDMEKWR----EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+ + EL ++ R + +K + K E ++ KKLE + +R M EEE++
Sbjct: 233 EKDDEYDQRVRELTFDR-RAQPTDRTKTEEELAKEEAERLKKLEAERLRR--MRGEEEDD 289
Query: 500 EEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
EE E + + +++E E +D + G G+GE +E +
Sbjct: 290 EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEE 325
Score = 39.2 bits (92), Expect = 0.007
Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 38/225 (16%)
Query: 338 AQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNA-NILLEELDMEKW 396
D+++ + D + D V K + + + EL ++
Sbjct: 195 KAKEEDEDLREEL----DDDFKDLMSLLRTVKPPPKPPMTPEEKDDEYDQRVRELTFDR- 249
Query: 397 REESKRAAQARKRERKK---------QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
RA +R K ++L+K E +R EE + E A+
Sbjct: 250 -----RAQPT---DRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADD 301
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+ + D + + + E++EE E+EE++++++E +E
Sbjct: 302 LDDEFEPDDDDNFGLGQGE--------------EDEEEEEDGVDDEDEEDDDDDLEEEEE 347
Query: 508 EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVK 552
+ ++ +EE +E D S E EE + +++ S+
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEE-EEEEEKEKKKKKSAESTRSEL 391
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 41.9 bits (99), Expect = 1e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINA 174
G +PL LAA NG+ VKLLL+ G+DINA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 38.0 bits (89), Expect = 3e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEH 39
+ +T L LA G+ ELV+LLL GADI
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 37.6 bits (88), Expect = 4e-04
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADID 308
GN+PL LAA G+L +V+LL +HGADI+
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 36.5 bits (85), Expect = 0.001
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
G TPL AA G +E+ ++LL+ GAD+NA
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 34.5 bits (80), Expect = 0.006
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEH 106
+TPL LA G E+V+LLL GA+
Sbjct: 3 NTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 34.5 bits (80), Expect = 0.006
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEIN 138
TPL LAA G + ++KLLL HGA+IN
Sbjct: 3 NTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 33.8 bits (78), Expect = 0.009
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEH 208
+ NT L LA G E+V LLL+ A++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.0 bits (76), Expect = 0.016
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 43 KGFTPLILAATAGHDKVVDILLNHKAD 69
G TPL LAA G+ ++V +LL H AD
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGAD 27
Score = 29.1 bits (66), Expect = 0.40
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEV 276
+T L +AA G+ V+LLL GA +
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 47.4 bits (112), Expect = 1e-05
Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 28/256 (10%)
Query: 21 GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT 80
G E VE LL RG D G PL +A+ ++++V +LL H AD A ++ K T
Sbjct: 49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHK-T 107
Query: 81 PLSLACSGGRYEVVE---LLLTRGANKEHRNVSDY--TPLSLAASGGYVNIIKLLLTHGA 135
PL SG EV+E LL+ GA K + +V + PL LA + + K +++ G
Sbjct: 108 PLYY-LSGTDDEVIERINLLVQYGA-KINNSVDEEGCGPL-LACTDPSERVFKKIMSIGF 164
Query: 136 EINSRTGSKLGISPL--MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
E +R K G + + L + N + + ++ +G ++ + + NT L + C +
Sbjct: 165 E--ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVK 221
Query: 194 --EVVSLLLDRKANVEHRAKTG---LTPLMEAASGGY-----VEVGRVLLDKGADVNAPP 243
++++LLL +V + K G LT L++ S + + V+ D+ ++
Sbjct: 222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNIC--- 277
Query: 244 VPSSRDTALTIAADKG 259
+ RD L I DKG
Sbjct: 278 IFYDRDDVLEIINDKG 293
Score = 36.6 bits (84), Expect = 0.038
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
RFVE LL +G + GN PL +A+ + +V +L HGAD ++ D
Sbjct: 53 RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACD 102
Score = 32.3 bits (73), Expect = 0.74
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 43/187 (22%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKV--VDI 62
+ET+ + + L +A + +V +LL+ GAD DK+ TPL + + + +++
Sbjct: 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLT----------RGANKEHRNV-SD 111
L+ + A + + PL LAC+ V + +++ G N HR++ SD
Sbjct: 126 LVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSD 184
Query: 112 ------------------------YTPLSLAASGGY--VNIIKLLLTHGAEINSRTGSKL 145
TPL + S V+II LLL ++N + +K
Sbjct: 185 NPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQ--NKF 241
Query: 146 GISPLML 152
G SPL L
Sbjct: 242 GDSPLTL 248
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 46.1 bits (110), Expect = 3e-05
Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 384 ANILLEELDMEKWREESKRAA-----QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
I +E + E+ REE + +A + E ++ ++ E+KEEK + + A+
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195
Query: 439 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK-QKKLEKKEEKRKAMEEEEE 497
+++ E A++ EE + K R++ K A+ R+R++++ Q+ E++ E+++ +EE
Sbjct: 196 DEREELDELRADLYQEEYE-RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEER 254
Query: 498 EEEEVEVQEVEGEMMEEETEE 518
EEE E + + + E+E E
Sbjct: 255 AEEEAERERMLEKQAEDEELE 275
Score = 43.0 bits (102), Expect = 3e-04
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 363 QECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR-------KRERKKQK 415
A++++ E A++ EE + K R++ K A+ R +R R++Q
Sbjct: 185 ARLRAQQEEAEDEREELDELRADLYQEEYE-RKERQKEKEEAEKRRRQKQELQRAREEQI 243
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
+ +++ + + EEE E R+ + Q + + N + + R E ++ + K E
Sbjct: 244 EEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEE-KEE 302
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
R+ ++ E+ EE + EEE E + +E
Sbjct: 303 RRAAEREEELEEGERLREEEAERQARIE 330
Score = 40.3 bits (95), Expect = 0.002
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKR----ERKKQKKLEKKEEKRKAM 427
K ++ L+ L E+ RE ++ + R E+ ++++ ++EE + +
Sbjct: 36 EKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERL 95
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE---- 483
+E E++ + + Q E + ++ + + +E RK E K++++ E
Sbjct: 96 QEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKI 155
Query: 484 --------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
++EE+R+A E +EE+E EV + + E E E ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREEL 201
Score = 39.1 bits (92), Expect = 0.005
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
L+EL + ++EE +R + +++E +K+ +K+E ++A EE+ E ++
Sbjct: 201 LDELRADLYQEEYERKERQKEKEEA-EKRRRQKQELQRAREEQIEEKEERLQEERAEEEA 259
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+LE+ E E + A + R + + +++LE++ E+++ E EEE +E E
Sbjct: 260 ERERMLEKQ-AEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEE-LEEGER 317
Query: 508 EGEMMEEE 515
E E
Sbjct: 318 LREEEAER 325
Score = 36.8 bits (86), Expect = 0.025
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
E+ + A+ ++ ER+ + +E++ K A EEE E R + ++ L+E
Sbjct: 27 EEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAV-------LQEQ 79
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
+E+ + + + R +ER++ + +EE+E E E +E + ++ EE
Sbjct: 80 -IEEREKRRQEEYEERLQEREQMDE-------IIERIQEEDEAEAQEKREKQKKLREEID 131
Query: 517 EENDM 521
E N+
Sbjct: 132 EFNEE 136
Score = 31.8 bits (73), Expect = 1.0
Identities = 27/149 (18%), Positives = 64/149 (42%), Gaps = 13/149 (8%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVA 437
ER + I + + E +E + + + E + + + ++ + E EE +++
Sbjct: 97 EREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKIL 156
Query: 438 K--NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM--E 493
+ ++AER EE + RE + + R R +Q++ E + E+ + +
Sbjct: 157 EYQREKAER---------EEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRAD 207
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEENDMH 522
+EE E E Q+ + E + ++ ++
Sbjct: 208 LYQEEYERKERQKEKEEAEKRRRQKQELQ 236
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 45.9 bits (110), Expect = 4e-05
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 23/153 (15%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
+ + A + A +LEE A+ KK+ LE KEE K E E+ +
Sbjct: 31 AKIKEAEEEAKRILEE-------------AKKEAEAIKKEALLEAKEEIHKLRNEFEKEL 77
Query: 435 RVAKN--QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 492
R +N Q+ E+ L+ +E + + + K +KQ++LEKKEE+ + +
Sbjct: 78 RERRNELQKLEKRLLQKEENLDR-KLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
Query: 493 EEEEEEEEEV-------EVQEVEGEMMEEETEE 518
EE+ +E E E +E+ E +EEE
Sbjct: 137 IEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
Score = 44.8 bits (107), Expect = 1e-04
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 378 ERANKNANILLEELDME------KWREESKRAAQARKRE-RKKQKKLEKKEEKRKAMEEE 430
E A K A + +E +E K R E ++ + R+ E +K +K+L +KEE ++ +
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE---NLDRK 101
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-----K 485
E++ + ++ E+ K +EL+ K+ + + ++ ++LE+
Sbjct: 102 LELLE-KREEELEKKEKELEQKQQELE--------KKEEELEELIEEQLQELERISGLTA 152
Query: 486 EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
EE ++ + E+ EEE E + E+ EE EE D
Sbjct: 153 EEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188
Score = 43.2 bits (103), Expect = 3e-04
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
K+ A+A+ +E +++ K +E K++A ++E + AK + + L E + E
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHK--------LRNEFEKEL 77
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEMMEEETEE 518
RE + KR +K++ L++K E + EEE E++E+E+E ++ E E EEE EE
Sbjct: 78 -RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Score = 40.5 bits (96), Expect = 0.002
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 397 REE--SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
+EE ++ KRE + +KK ++ E+K++ +E++EE + +Q + + + + E
Sbjct: 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
Query: 455 E---LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
E + +EK EE++ A +E +++ K E ++ ++
Sbjct: 154 EAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192
Score = 39.8 bits (94), Expect = 0.003
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRE 475
+ KK + K E EEE R+ + + E LLE + + K R E ++ + R+ E
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83
Query: 476 -RKKQKKLEKKEEK-RKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+K +K+L +KEE + +E E+ EEE+E +E E E ++E E+
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 46.2 bits (110), Expect = 5e-05
Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 19/187 (10%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERAN-----------KNANILLEELDMEKWREESKRAA 404
+EL +K E + + + E + I D+ + E ++
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEE-------EVIRVAKNQQAERANKNANILLEELD 457
+ + K+ +LE + E+ + EE E Q E+ + L E LD
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE-EEEEVEVQEVEGEMMEEET 516
+ A RER + + +R+ + EE+ EE +++ + E+ E E
Sbjct: 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
Query: 517 EENDMHS 523
++ S
Sbjct: 867 LIEELES 873
Score = 44.3 bits (105), Expect = 2e-04
Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARK--------RERKKQKKLEKKEEKRKA 426
++ ++ + L+ +K + +R A + E + K E EE
Sbjct: 284 EELQKELYALANEISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEEL-AE 341
Query: 427 MEEEEEVIRV------AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
+EE+ E ++ A+ ++ E + LEEL+ E+ + AQ +
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLELQIASLNN 400
Query: 481 KLE-----------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
++E ++E ++ +EE ++ EE E++E++ E+ E E E +
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451
Score = 43.1 bits (102), Expect = 5e-04
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 375 QQAERANKNANIL--LEELDME----KWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
+QAE+A + + L EL++ + E + + ++ ++ +++LE+ + + +E
Sbjct: 207 RQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266
Query: 429 EEEEVIRVAKN------QQAERANKNANILLEELDMEKWREESKRAAQARKR-------- 474
E+ E +R+ + ++ ++ + L E+ K+ + R
Sbjct: 267 EKLEELRLEVSELEEEIEELQKELYALANEISRL------EQQKQILRERLANLERQLEE 320
Query: 475 -----ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E + K E EE A EE+ EE + E++ +E E+ E E E ++ S
Sbjct: 321 LEAQLEELESKLDELAEE--LAELEEKLEELKEELESLEAELEELEAELEELES 372
Score = 40.4 bits (95), Expect = 0.003
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 379 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
A N++IL ++E+ E+ + + + + +K L + ++ + +EEE E +R
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKEL 721
Query: 439 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
+ + I D+ + E ++ + + K+ +LE + E+ EE E
Sbjct: 722 EE------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE----LEERLE 771
Query: 499 EEEVEVQEVEGEMMEEETEENDM 521
E E E+ E E E+ E E + +
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQL 794
Score = 39.7 bits (93), Expect = 0.006
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEE 431
E AN + E + + + + + + L + EE + +EE E
Sbjct: 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ N++A LEE E + + + R+ E K+ + + EE R+
Sbjct: 873 SELEALLNERAS---------LEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
Query: 492 MEEEEEEEEEVEVQE--------VEGEMMEEETEEN 519
+ + E E +EV+ E + EE E
Sbjct: 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAL 959
Score = 37.3 bits (87), Expect = 0.027
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
ERA+ + L ++E+ EE + R R++ LE+ EK +E E +
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRE---LEELREKLAQLELRLEGLE 935
Query: 436 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
V + ER ++ ++ LEE + + + E R+ +R + K E A+EE
Sbjct: 936 VRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY 995
Query: 496 EEEEE 500
EE +E
Sbjct: 996 EELKE 1000
Score = 35.8 bits (83), Expect = 0.080
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 382 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQ 441
++ LEEL+ E ES+ + E + K + + + E I + +
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----IERLEARL 409
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
ER L +E++ + E + + + +++LE+ +E+ + +EE EE E
Sbjct: 410 -ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
Query: 502 VEVQEVEGEMMEEETEEN 519
E++E E + E E
Sbjct: 469 -ELEEAEQALDAAERELA 485
Score = 35.4 bits (82), Expect = 0.089
Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 3/153 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ Q + +EEL+ E + A + E + + + KEE + E +
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK-EEKRK 490
E+ E AN + E + + + + + + L + EE +
Sbjct: 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
Query: 491 AMEEEEEE--EEEVEVQEVEGEMMEEETEENDM 521
+EE E E E +E + +E ++
Sbjct: 867 LIEELESELEALLNERASLEEALALLRSELEEL 899
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 39.9 bits (94), Expect = 6e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINA 174
G +PL LAA NG+ VKLLLD G+DINA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 39.5 bits (93), Expect = 1e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIE 38
+ T L LA G+ E+V+LLL +GADI
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 39.1 bits (92), Expect = 1e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADID 308
G +PL LAA G+L VV+LL GADI+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 37.6 bits (88), Expect = 4e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 111 DYTPLSLAASGGYVNIIKLLLTHGAEIN 138
TPL LAA G + ++KLLL GA+IN
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 36.4 bits (85), Expect = 0.001
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEA 72
G TPL LAA G+ +VV +LL+ AD+ A
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 34.9 bits (81), Expect = 0.004
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKE 105
TPL LA G EVV+LLL +GA+
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ T L LA G EVV LLLD+ A++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Score = 32.6 bits (75), Expect = 0.027
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
G TPL AA G +EV ++LLDKGAD+NA
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEV 276
T L +AA+ G+ V+LLL KGA +
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 45.3 bits (108), Expect = 9e-05
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 35/135 (25%)
Query: 397 REESKRAAQARKR--------ERKKQKKLEK---KEEKRKAMEEEE-----EVIRVAKNQ 440
+E K+A +A+ R ER+K + + E R A +++ ++ K
Sbjct: 442 EQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAA 501
Query: 441 QAERANKNANILLEELDMEKWREESKRAAQARKRE-------------------RKKQKK 481
+ A + + RE K A+AR+ E R K KK
Sbjct: 502 ATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKK 561
Query: 482 LEKKEEKRKAMEEEE 496
++ +A EE +
Sbjct: 562 AAQQAANAEAEEEVD 576
Score = 38.0 bits (89), Expect = 0.014
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
AK ++A + NA E K+AA A R K KK ++ + E+
Sbjct: 557 AKAKKAAQQAANAEAEEEVDP--------KKAAVAAAIARAKAKKAAQQAASAEPEEQVA 608
Query: 432 EV-IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
EV + A A K + + + ++AA A R K +K +++ +
Sbjct: 609 EVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAE 668
Query: 491 AMEEEEEEEEEV 502
E E+ ++ V
Sbjct: 669 PEEAEDPKKAAV 680
Score = 33.0 bits (76), Expect = 0.54
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
I AK ++A + +A E + + + K+AA A R K KK E++
Sbjct: 586 IARAKAKKAAQQAASA-----EPEEQVAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEP 640
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ VA +A K A + + E+ K+AA A R K KK +
Sbjct: 641 VDPRKAAVAAAIARAKARKAA--QQQANAEPEEAEDPKKAAVAAAIARAKAKKAAQ 694
Score = 32.6 bits (75), Expect = 0.59
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 30/118 (25%)
Query: 402 RAAQA--RKRERKKQKKLEKKE--EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
R A+A R E++K+K E K E R+A E E+ A R +
Sbjct: 432 RQAKAEIRAIEQEKKKAEEAKARFEARQARLEREK---------AAREAR---------- 472
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
K+AA+AR + K K K + + + ++
Sbjct: 473 -------HKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAR 523
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 44.8 bits (106), Expect = 9e-05
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEKR 424
+ + ++ E + +K+A QA K+ +KQK+ E K+ +
Sbjct: 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
KA E E A+ + E A K A EE K E+K+ A K++ + + K K
Sbjct: 133 KAKAEAE-----AEKKAKEEAKKQA----EEEAKAKAAAEAKKKAAEAKKKAEAEAK-AK 182
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGE 510
E K KA EE + + E + E
Sbjct: 183 AEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 43.7 bits (103), Expect = 2e-04
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 5/165 (3%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
AK + E K E+K A+A + E+K +++ +K+ E+ +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA-EAEKKAKEEAKKQAEEEAKAKAAA 162
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
E AK + AE K + + + + + A+A + K + K E A
Sbjct: 163 E----AKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAA 218
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDS 536
E E + + E+ + G G E D
Sbjct: 219 AAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGNAAGSEVDK 263
Score = 42.9 bits (101), Expect = 3e-04
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK----EEKRKAME 428
+ Q+ A K + + E+ + A QAR++E +++ EK E+ K E
Sbjct: 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
E+++ AK +QA A A E+ E+ + K+A + K + + K + E K
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAK---KQAEEEAKAKAAAEAKKKAAEAK 172
Query: 489 RKAMEEEEEEEE 500
+KA E + + E
Sbjct: 173 KKAEAEAKAKAE 184
Score = 42.5 bits (100), Expect = 4e-04
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 367 MVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 426
+V A QQA R I ++ K +E ++ + + E +KQ+ E + ++K
Sbjct: 42 LVDPGAVAQQANR------IQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE--QARQKE 93
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK- 485
+E+ + AK + E K E+K A+A + E+K +++ +K+
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA-EAEKKAKEEAKKQA 152
Query: 486 EEKRKAMEEEEEEEEEVE 503
EE+ KA E +++ E
Sbjct: 153 EEEAKAKAAAEAKKKAAE 170
Score = 36.0 bits (83), Expect = 0.050
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLE-KKEEKRKAMEEEEEVIRVAKNQ-QAERANKNAN 450
++ ++ A K+E+++QKKLE + EE K E+ + + + AE+A K A
Sbjct: 49 AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA- 107
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
E++ + A+ ++++ ++ K + E K KA E E++ +E ++ E E
Sbjct: 108 ------------EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Query: 511 MMEEETEE 518
+ E
Sbjct: 156 AKAKAAAE 163
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 43.9 bits (104), Expect = 1e-04
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 23/126 (18%)
Query: 398 EESKRAAQARKRERKKQKKLEK-KEEKRKAMEEEEEVIRVA----------KNQQAE--- 443
E A QA+++++ ++ EK K+E+ K EE E R+A K QQA
Sbjct: 90 ENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQR 149
Query: 444 ------RANKNANILLEELDMEKWR---EESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
A ++A+ L + EE+K+ Q + ++ KQ++ +++EE+RK ++
Sbjct: 150 TPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKK 209
Query: 495 EEEEEE 500
++EEEE
Sbjct: 210 QQEEEE 215
Score = 42.0 bits (99), Expect = 4e-04
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 377 AERANKNANILLEELDMEKWREESKRAAQARKRER----------KKQKKLEKKEEKRKA 426
A++A + + + +K +E K +A R+R +++ + K+ K
Sbjct: 95 AKQAQRQKKLQKLLEEKQK-QEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153
Query: 427 MEEEEEVIRVAKNQQAERANK----NANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
+E E + + A+ A L+E +++K +++ ++ R+ ER+KQ+K
Sbjct: 154 KKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK----REEERRKQRKK 209
Query: 483 EKKEEKRKAMEEE 495
+++EE+RK EE
Sbjct: 210 QQEEEERKQKAEE 222
Score = 33.5 bits (77), Expect = 0.21
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 366 SMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 425
S + + + + + A L+E +++K +++ ++ R+ ER+KQ+K +++EE+RK
Sbjct: 162 SSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK----REEERRKQRKKQQEEEERK 217
Query: 426 AMEEE 430
EE
Sbjct: 218 QKAEE 222
Score = 28.5 bits (64), Expect = 8.4
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 398 EESKRAAQARKRERKKQKKLEKK--EEKRKAMEEEEEVIRVAKNQQAERANKN 448
EE+K+ Q + E KK K+ ++K EE+RK ++++E + Q+AE A +
Sbjct: 178 EEAKKRLQ--EWELKKLKQQQQKREEERRKQRKKQQEEEE--RKQKAEEAWQK 226
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 43.8 bits (103), Expect = 3e-04
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM 458
E + ER + + E EE E+E E +N+ E ++
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENES-------------EGEI 685
Query: 459 EKWRE---ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
R+ E + +A++ + K + + E+ E + + E E+E E+E E EGE +E+E
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGE-EGEEVEDE 744
Query: 516 TEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNE 550
E + EG+ ++ + ++A +E
Sbjct: 745 -GEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778
Score = 43.4 bits (102), Expect = 3e-04
Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 4/183 (2%)
Query: 388 LEELDMEKWREESKRAAQA-RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
E K ES+ A RK E++ + ++E KE K E E E + +AE
Sbjct: 669 QEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKG-ETEAEEVEHEGETEAEGTE 727
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
I E E E A + E + +K + E + +A +E+E+E E++ E
Sbjct: 728 DEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGE 787
Query: 507 VEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKK 566
+GE M+ + G GE+ + + +QA + + +T +++ +
Sbjct: 788 -DGE-MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEA 845
Query: 567 KLD 569
K D
Sbjct: 846 KQD 848
Score = 40.0 bits (93), Expect = 0.004
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+ E + ++ E + + + E KE++ + + E + ++ AE ++
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Query: 457 DMEKWREESKRAAQARKRERKKQKKL------EKKEEKRKA----------MEEEEEEEE 500
E + +A ++ +++L E K++++ EEEEEEEE
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871
Query: 501 EVEVQEVEGEMMEEETEEND 520
E E +E E E EEE EEN+
Sbjct: 872 EEEEEEEEEEEEEEEEEENE 891
Score = 36.9 bits (85), Expect = 0.032
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 7/131 (5%)
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
E + E +E + + + E + K E E K + E E + Q+E +
Sbjct: 767 EGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDT 826
Query: 450 NILLEELDMEKWREESKRAAQARK--RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+ E + E E A Q K + +EE EEEEEEEEE E +E
Sbjct: 827 EVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE-----EEEEEEEEEEEEEEE 881
Query: 508 EGEMMEEETEE 518
E E EEE EE
Sbjct: 882 EEEEEEEENEE 892
Score = 36.1 bits (83), Expect = 0.060
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE---------EEEEEVEVQEV 507
+ E A+ E + ++ E + K E E E+E E E++
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Query: 508 EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAA 555
E + + ETE ++ G EG E + I+ + +E + A
Sbjct: 703 EAD-HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEA 749
Score = 35.4 bits (81), Expect = 0.091
Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 10/168 (5%)
Query: 376 QAERANKNANILLEELDMEKWRE--------ESKRAAQARKRERKKQKKLEKKEEKRKAM 427
+A+ A+ EE++ E E E + + + E + + + E K E
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK-KLEKKE 486
+ +E + + I E K E ++ + +K + E +
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819
Query: 487 EKRKAMEEEEEEEEEVEVQ-EVEGEMMEEETEENDMHSSGGGRGEGEE 533
E + E ++E E E+ E +GE ++E + S GG E EE
Sbjct: 820 ETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEE 867
Score = 31.5 bits (71), Expect = 1.6
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAME-EEEEEEEEVEVQEVEGEMMEEETEEND 520
E++ + E ++ + E + + E E+E E E E EGE+ E E +
Sbjct: 635 VAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQE 694
Query: 521 MHSSGGGRGEGEEGDSGIDANSQ 543
G G E +E D + ++
Sbjct: 695 ----GEGEIEAKEADHKGETEAE 713
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 43.5 bits (103), Expect = 3e-04
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+++ ++ Q +R+R +++ +R+ E EE R + Q + A + E
Sbjct: 603 QQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVT 662
Query: 457 DMEKWREESKRAAQA----RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+ + ++E ++A + R+ + K+Q + E K + +E E+EE VQ+V
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEE-RVQQV 716
Score = 33.9 bits (78), Expect = 0.31
Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 31/149 (20%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
+ Q + A + E + + ++E ++A R+R+R++ +EKR+A +E +
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQA-PRRERQRRRN------DEKRQAQQEAKA 696
Query: 433 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK---EEKR 489
+ ++ Q E+ +R Q + R+KQ++L +K E+
Sbjct: 697 LNVEEQSVQET-------------------EQEERVQQV--QPRRKQRQLNQKVRIEQSV 735
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
EE V + V E+ TE
Sbjct: 736 AEEAVAPVVEETVAAEPVVQEVPAPRTEL 764
Score = 31.2 bits (71), Expect = 2.0
Identities = 27/143 (18%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 370 RVAKNQQAE-RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK-----EEK 423
R A+ Q AE R ++ A + + ++ ++ +R Q R+ + K+Q + E K E+
Sbjct: 644 RQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQS 703
Query: 424 RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE 483
+ E+EE V +V ++ + N+ I + + A + + E
Sbjct: 704 VQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRTE 763
Query: 484 KKEEKRKAMEEEEEEEEEVEVQE 506
+ + + E++E E
Sbjct: 764 LVKVPLPVVAQTAPEQDEENNAE 786
Score = 29.2 bits (66), Expect = 7.1
Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 30/134 (22%)
Query: 415 KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN------------ILLEELDMEKWR 462
K L E+ K E+ +Q +R N + + R
Sbjct: 577 KALFSGGEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENR 636
Query: 463 EESKR--------AAQAR----------KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV 504
EE++R A+ R R + +Q++ ++E +R+ +E+ + ++E +
Sbjct: 637 EENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKA 696
Query: 505 QEVEGEMMEEETEE 518
VE + ++E +E
Sbjct: 697 LNVEEQSVQETEQE 710
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 42.3 bits (100), Expect = 3e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV--EVQEVEGEM 511
EE D EK E++K AA+A+ ++ K K EK++ KR+ E+ E EE E + E
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLR 98
Query: 512 MEEETEENDM 521
+ + EE+D+
Sbjct: 99 LRKLQEESDL 108
Score = 33.5 bits (77), Expect = 0.23
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
EE D EK E++K AA+A+ ++ K K EK++ KR+ E+
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 31.2 bits (71), Expect = 1.3
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
++ + W EE + K + + K KK K K E+E+ + E+ E E E
Sbjct: 30 DDDVKDSWDEEEDEEKEEEKAKVAAKAK-AKKALKAKIEEKEKAKREKEEKGLRELEEDT 88
Query: 514 EETEE 518
E E
Sbjct: 89 PEDEL 93
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 43.1 bits (101), Expect = 4e-04
Identities = 31/154 (20%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+E++KRA Q ++ KKQ +K ++K ++ + R + +Q ++ KN +
Sbjct: 209 QEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQR-DEVRQKQQEAKNLP---KPA 264
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEE-EEEVEVQEVEGEMMEE 514
D +E+ + A ++ K Q +++K EE KA + + + ++E + E E E E
Sbjct: 265 DTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKEL 324
Query: 515 ETEENDMHSSGGGRGEGEEGDSGIDANSQASCSS 548
E ++ + + + ++ + ++ + S
Sbjct: 325 EAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDS 358
Score = 39.6 bits (92), Expect = 0.004
Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 373 KNQQAERANKNANILLEELDMEKWR--------EESKRAAQARKRERKKQKKLEKKEEKR 424
K ++++ K A L EELD ++ + ++ A ++ E +++++ K K
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 425 KAMEEEEEVIRVAKNQ--QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
+E +VA+NQ + E+A EE K + +++ E++ + K
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKE 323
Query: 483 EKKEEKRKAMEEE 495
+ ++KR+ + E+
Sbjct: 324 LEAQKKREPVAED 336
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.8 bits (96), Expect = 4e-04
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 25/120 (20%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
R+RE ++ + +++K +K EE ++ + + ++ + E
Sbjct: 43 ALRRREYERLELMDEKWKKETEDEEFQQ--KREEKKRKD--------------------E 80
Query: 465 SKRAAQARKRERKKQKKLEKKEEK---RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
K A + KR++KKQKK +KK+ K +K +E + EE +E EGE ++E M
Sbjct: 81 EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIM 140
Score = 33.9 bits (78), Expect = 0.071
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 45/141 (31%)
Query: 368 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 427
V R + ++ ER LE +D EKW++E++ +KRE KK+K E+K K++A
Sbjct: 40 VYRALRRREYER--------LELMD-EKWKKETEDEEFQQKREEKKRKD-EEKTAKKRA- 88
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
+ + K+ + +K++ KK K E+KE
Sbjct: 89 ----------------------------------KRQKKKQKKKKKKKAKKGNKKEEKEG 114
Query: 488 KRKAMEEEEEEEEEVEVQEVE 508
+ + E +EEEE E ++ E
Sbjct: 115 SKSSEESSDEEEEGEEDKQEE 135
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 42.2 bits (99), Expect = 5e-04
Identities = 31/176 (17%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+++ + + A+K E++++KK E+ EE + E+E ++ + ++
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKER----------- 110
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
L+ + +K EE+++ AQ ++++++Q + E+K+KA + + E + E
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170
Query: 513 EEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKL 568
++ E ++ + + E + A ++A ++ + K A + +KK +
Sbjct: 171 KKAEEA--AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAA 224
Score = 42.2 bits (99), Expect = 5e-04
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 2/176 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
A+ Q + + +K + E+ +A A + + K KK+ + A EE
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ ++A A E+ E + E K + +K K KA
Sbjct: 183 AKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKA 242
Query: 492 MEE--EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQAS 545
+ + E ++ + + +GGG SG NS AS
Sbjct: 243 DKAAAAAKAAERKAAAAALDDIFGGLSSGKNAPKTGGGAKNASSQGSGAAKNSGAS 298
Score = 42.2 bits (99), Expect = 6e-04
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME--E 429
AK + +R K + E + +E + + + + ++Q+K ++ EK+ +E +
Sbjct: 74 AKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQ 133
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR-AAQARKRERKKQKKLEKKEEK 488
+EE R A +Q ++A E K E+K+ A +A K + + K E K
Sbjct: 134 QEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAK 193
Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+KA E + E+ + + E++ E
Sbjct: 194 KKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 42.7 bits (100), Expect = 5e-04
Identities = 29/151 (19%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
++ +N + ++ + ++ E +K ++ K+ + +++ER K KK E + K +
Sbjct: 175 VQKHRNAETSKSPEKGDVPAVE---KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLA 231
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK----RERKKQKKLEK 484
++ A +A+ A+ + D E + A + +K +++K++K+ E+
Sbjct: 232 LDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEE 291
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
K++K+K + Q V+ +EEE
Sbjct: 292 KKKKKKHHHHRCHHSDGGAEQPVQNGAVEEE 322
Score = 37.4 bits (86), Expect = 0.020
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 395 KWREESKRAAQARKRERKKQKKLEKKEEKRK----AMEEEEEV-----IRVAKNQQAERA 445
K EE + + K +R+K+K+ ++K +R+ E +E++ + + + E A
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENA 142
Query: 446 ------NKNANILLEELDM---------EKWREESKRAAQARKRER--------KKQKKL 482
+K+ N LD+ EK + R A+ K KK KK
Sbjct: 143 LPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKP 202
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE---------ETEENDMHSSGGGRGEGEE 533
+KKE+K K E ++++++EVE + +++ E +E + ++ G E
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSE 262
Query: 534 GDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
D DA ++ + S + K +++KKKKK
Sbjct: 263 PDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKK 296
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 41.6 bits (98), Expect = 5e-04
Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 386 ILLEELDMEKWREESKRAAQA---RKRERKKQKKLEKKEEKRKAMEE-EEEVIRVAKNQQ 441
+ +++LD+EK R E + +K + + + + E +E+ E +V ++ Q
Sbjct: 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69
Query: 442 AERANKN--------------ANILLEELDMEKWREESKR--AAQARKRERKKQKKLEKK 485
R L E+ + K R S A+ + K +K++E
Sbjct: 70 EIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129
Query: 486 EEKRKAMEE---EEEEEEEVEVQEVEGEMMEEETEE 518
+E+ + +E+ E E E EV E+ E E ++
Sbjct: 130 KERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 39.2 bits (92), Expect = 6e-04
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
EK E K+ +A+ RE K +K + K ++R+A ++EE+ E Q
Sbjct: 33 EKGIAEYKKQQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVTQ 79
Score = 35.7 bits (83), Expect = 0.008
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
EK E K+ +A+ RE K +K + K ++R+A ++EE ++ ++NK LL
Sbjct: 33 EKGIAEYKKQQKAKAREADKARKQQLKAKQRQAANDDEEDT--IESVTQSQSNKLPWGLL 90
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 42.7 bits (100), Expect = 7e-04
Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 21/198 (10%)
Query: 354 NDKELLDKCQECSMVIRVAKNQQAERANK-NANILLEELDMEKWR---EESKRAAQARKR 409
+ E K E S A N +++ +K + N LE+ D ++ E S +
Sbjct: 3915 DLLETEQKSNEQS-----AANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
+ Q+ + + + ++ E++ + + + + LE++DME +E+K A
Sbjct: 3970 QPDIQENNSQPPPENEDLDLPEDL-----KLDEKEGDVSKDSDLEDMDMEA-ADENKEEA 4023
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN---DMHSSGG 526
A K E + E E+ ++E+ ++++ ++ E + +M E+ EEN + S+
Sbjct: 4024 DAEKDEPMQD---EDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Query: 527 GRGEGEEGDSGIDANSQA 544
G EE + G QA
Sbjct: 4081 GVKSDEELEQGEVPEDQA 4098
Score = 32.7 bits (74), Expect = 0.85
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 20/160 (12%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQ-------ARKRERKKQKKLEK---KEEKRKAM 427
A N L E+ D+E+ E A Q AR+ E + E +
Sbjct: 3822 VGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDS 3881
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE--RKKQKKLEKK 485
EEE + + N E +N L E+L E E+ Q + + L K
Sbjct: 3882 EEENQDLDEEVNDIPE---DLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSK 3938
Query: 486 EEKRKAME-----EEEEEEEEVEVQEVEGEMMEEETEEND 520
E+ KA+E E+E+EEE + ++ E+ + E N
Sbjct: 3939 EDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 42.0 bits (99), Expect = 0.001
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 393 MEKWREESKR-AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK--NA 449
+ K EE R A+ R+ E+K + +KE K ++E +E K Q + N
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
Query: 450 NILLEELDME------KWRE-ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
N EEL+ E R+ ES+ ++R+ + + E + + + + E++ + +
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
Query: 503 EVQEVEGEMMEEETEE 518
+ + E +EEE E
Sbjct: 920 SELKAKLEALEEELSE 935
Score = 38.9 bits (91), Expect = 0.008
Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 24/190 (12%)
Query: 356 KELLDKCQECSMVIRVAKNQQ---AERANKNANIL------LEELDMEKWREESKRAAQA 406
EL + + S I + + + K L L L+ E +S+
Sbjct: 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
Query: 407 RKRERKKQK--KLEKKEEKRKAMEEEEEV--IRVAKNQQAERANKNANIL------LEEL 456
+ E ++ KLE+ +A + I+ ++ E ++ L L L
Sbjct: 765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
Query: 457 DMEKWREESKRA-AQARKRERKKQKKLEKKE----EKRKAMEEEEEEEEEVEVQEVEGEM 511
+EK E + Q ++ + K+Q K +KE +K EEE EE E ++++E +
Sbjct: 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
Query: 512 MEEETEENDM 521
+ + E +++
Sbjct: 885 GDLKKERDEL 894
Score = 38.5 bits (90), Expect = 0.011
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
+RKK+K LE+ EE + +E + +I + Q LE L E+ + E +A
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQ------------LERLRREREKAERYQAL 216
Query: 470 QARKRERKKQKKLEKKEEKRKAME---------EEEEEEEEVEVQEVEGEMMEEETEEND 520
KRE + + L++KE + E EEE E+ E+ E+E + E E +
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
Query: 521 MHSSGGGRGEGE 532
++ GE E
Sbjct: 277 LNKKIKDLGEEE 288
Score = 37.7 bits (88), Expect = 0.019
Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 12/151 (7%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
K ++ E A + L E+D E +R+R+ + E E K + +
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK---------KL 482
E+ V K R E+L+ K + R +E ++ +
Sbjct: 372 ELEEVDKEFAETRDELKD--YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E K +EEE+E++ E+++ E ++ +
Sbjct: 430 AGIEAKINELEEEKEDKAL-EIKKQEWKLEQ 459
Score = 36.2 bits (84), Expect = 0.063
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Query: 355 DKELL-DKCQECSMVIRVAKNQQAERANK--NANILLEELDMEKWREESKRAAQARKRER 411
+KE L + QE K Q + N N EEL+ E+ E R
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE-EELEELEAALRDLESRLG 885
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVA---KNQQAERANKNANILLEELD-MEKWREESKR 467
+K+ ++ E + + +E + E + K ++ L EEL +E + E +
Sbjct: 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEE------EEEEEEEVEVQEVEGEMMEEETE 517
+ Q +L++ EE+ +A+E +E EE + E++ + + E E
Sbjct: 946 IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE 1001
Score = 35.4 bits (82), Expect = 0.11
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 400 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDME 459
S+ R + +L++ E+ + ++ E ++ + E + L +
Sbjct: 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI-ENRLDELSQELSDAS-R 716
Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
K E K Q + E K +++LE+ EE ++E+E E + E++E+E + E E
Sbjct: 717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-ELKELEARIEELE 771
Score = 33.5 bits (77), Expect = 0.37
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR-KRERKKQ 414
+ LL + +E + + + ER + L L+ E E+ KR + +
Sbjct: 214 QALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEL--EKLTEEISELEKRLEEIE 271
Query: 415 KKLEKKEEKRKAMEEEE--EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR 472
+ LE+ +K K + EEE V +AE A+ +I +E ++E A
Sbjct: 272 QLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE----------DAE 321
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+R K + +++K + + +E E EE E ++ E E + E D+
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEE-ERKRRDKLTEEYAELKEELEDL 369
Score = 33.5 bits (77), Expect = 0.43
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 6/133 (4%)
Query: 397 REESKRAAQARKRERKKQKKLE----KKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
R E + R+R +++L + ++E + + A ++ K L
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS-RKIGEIEKEIEQL 728
Query: 453 LEELDMEKWR-EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+E + K R EE + + ++E + K K+ E R EE+ + E + ++E +
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 512 MEEETEENDMHSS 524
E S
Sbjct: 789 SHSRIPEIQAELS 801
Score = 33.1 bits (76), Expect = 0.46
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 387 LLEELDMEKWREES-KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA 445
EL + R E KR + + E ++ + E + + + I + + E+
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLD--ELSQELSDASRKIGEIEKEI-EQL 728
Query: 446 NKNANILLEEL-DMEKWREESKRAAQARKRERKK-QKKLEKKEEKRKAMEEEEEEEE--- 500
+ L E L ++E+ ++ + K E K+ + ++E+ EE +EE + E
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788
Query: 501 -EVEVQEVEGEMMEEETE 517
+ E++ E+ + E E
Sbjct: 789 SHSRIPEIQAELSKLEEE 806
Score = 33.1 bits (76), Expect = 0.56
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 12/139 (8%)
Query: 398 EESKRAAQARKRERKKQKKLEK-KEEKRKAMEEEEEVIRVAKNQQAERANKNANI--LLE 454
E K A+ R + ++KLEK K E + E + + + E A+ NA I +
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
Query: 455 EL-----DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
++ + E E K+ ++ K E++ K EE + E E+ +++
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK----EEYDRVEKELSKLQR 490
Query: 510 EMMEEETEENDMHSSGGGR 528
E+ E E + G
Sbjct: 491 ELAEAEAQARASEERVRGG 509
Score = 32.0 bits (73), Expect = 1.1
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 33/163 (20%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK----------AMEEEEEVIRVA 437
LE L E+ + E +A KRE + + L++KE + ++EEE E +
Sbjct: 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE 259
Query: 438 KNQQAERANKNANILLEELD---MEKWREESKRA-----------AQARKRERKKQKKLE 483
++ +R + LLEEL+ + EE R A + +K+++LE
Sbjct: 260 ISELEKRLEE-IEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE 318
Query: 484 KKEEKRKAMEEE--------EEEEEEVEVQEVEGEMMEEETEE 518
EE+ +E E EE E E+E + + + EE E
Sbjct: 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
Score = 30.4 bits (69), Expect = 3.1
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 388 LEELDMEKWREESKRA-----AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQA 442
LEEL+ + E Q +R R++++K E+ + K E E + + +
Sbjct: 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEAL 235
Query: 443 ERANKNANILLEELDMEKWREESKRAAQAR-KRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
ER + L L+ E E+ KR + ++ LE+ +K K + EEE+ +
Sbjct: 236 ERQKEAIERQLASLEEEL--EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK 293
Query: 502 VEVQEVEGE 510
++ E+E E
Sbjct: 294 EKIGELEAE 302
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 41.8 bits (99), Expect = 0.001
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 12/163 (7%)
Query: 356 KELLDKCQECSMVIR---------VAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
KELL+K +E + ++ A+ ++A+R + E EE +A A
Sbjct: 18 KELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAA 77
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
++ + E E+E + +A K A +K +
Sbjct: 78 AAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKA 137
Query: 467 RAAQARKRERKKQ---KKLEKKEEKRKAMEEEEEEEEEVEVQE 506
R + K + + ++ +K+K + E+ EV + E
Sbjct: 138 ARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180
Score = 37.5 bits (88), Expect = 0.023
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 15/164 (9%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
++ R E K+ + KE K E EV K+ + +EE + K
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEV-------------KSHSSTVEEEEARKEEA 48
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
+ + +A+ + + EE+ KA EE E E+
Sbjct: 49 KREAEEEAKAEAEEAAA--AEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARP 106
Query: 524 SGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+ + + + AA +R K +
Sbjct: 107 AEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGR 150
Score = 29.4 bits (67), Expect = 6.8
Identities = 23/148 (15%), Positives = 38/148 (25%), Gaps = 20/148 (13%)
Query: 420 KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
+EE RK + E + A A + K E
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAA--------------------AEAEEEAKAEAAAA 79
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGID 539
E+ E A E E+ + E + ++ G + +
Sbjct: 80 APAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAAR 139
Query: 540 ANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+ + RRK KKK+K
Sbjct: 140 GGKRGKGGKGRRRRRGRRRRRKKKKKQK 167
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 26/109 (23%)
Query: 402 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL--------- 452
+ A +R + ++K+ EKK R N+ I+
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLW-----------------TLRRNRLRMIITPWRAPELH 326
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
E +++K R K A+ARK+E ++++ ++E R+A +E
Sbjct: 327 AENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMAR 375
Score = 39.4 bits (92), Expect = 0.004
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 50/152 (32%)
Query: 377 AERANKNANIL---------LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 427
R N+ I+ E +++K R K A+ARK+E +KR+A
Sbjct: 307 TLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIA---------QKRRAA 357
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
E E N+ A R+E A + R +
Sbjct: 358 ERE--------------INREA------------RQERAAAMARARARRA------AVKA 385
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
K+K + + E+ E +
Sbjct: 386 KKKGLIDASPNEDTPSENEESKGSPPQVEATT 417
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 41.4 bits (98), Expect = 0.001
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 407 RKRERKKQKKLEKK------EEKRKAMEEEEEVIRVAKNQQAERANKNANIL-LEELDME 459
K +R+ + + KK KRK E + + E A + A L L E ++E
Sbjct: 341 TKEKRETRDSIAKKIAEKLHTSKRKVRREVLPFLSIIFKHNPELAARLAAFLELTEEEIE 400
Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
K + +K K +KK E++++++K +++EE E +E E + E+E EE
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Query: 520 DMHSSGGGRGEGEEGDSGIDA 540
+ E ++ + +
Sbjct: 461 EAEEEKEEEEEKKKKQATLFD 481
Score = 31.4 bits (72), Expect = 1.3
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 35/114 (30%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
L E ++E K + +K K +KK E++++++K +
Sbjct: 394 LTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK-------------- 439
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ + E K++K+ EK+EE+ +A EE+EEEEE+
Sbjct: 440 ---------------------KEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 375 QQAERANKNANILLEELDMEKWRE-ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
QQ +++ K A ++ + ++ E + K+AA+ + ++ ++++L +E+K++A EE
Sbjct: 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAK 125
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
K +QAE A A K E+KRAA A K+ + KK + E +KA
Sbjct: 126 QAALKQKQAEEAAAKA----AAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA 181
Query: 494 EEEEEEEEVEVQEVEGE 510
E +++ E + E
Sbjct: 182 EAKKKAEAEAAAKAAAE 198
Score = 38.2 bits (89), Expect = 0.009
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
E+ R Q +K ++ +++ +KKE+++ EE + A Q+ + E +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQ----AEELQQKQAAEQERLKQ--------LEKE 109
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+E+ K+A +A K+ KQK+ E+ K A + + E E + E
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Score = 36.7 bits (85), Expect = 0.033
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKR-ERKKQKKLEKKEEKRKAMEEE 430
K +QAE A A K E+KRAA A K+ + +KK E + K+ A E +
Sbjct: 129 LKQKQAEEAAAKA----AAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAK 184
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
++ A + A A K A E +K E+K+ A A + + E K K
Sbjct: 185 KKAEAEAAAKAAAEAKKKA----EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEK 240
Query: 491 AMEEEEEEEEEVEVQEVE 508
A + E+ E
Sbjct: 241 AAAAKAAEKAAAAKAAAE 258
Score = 35.9 bits (83), Expect = 0.056
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 397 REESKRAAQARKRE-RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
R++ ++ + R E RKK+++ + +E ++K E+E + ++ K + A + K
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK-------- 117
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
K EE+ + A ++++ ++ K KA E + + E + E
Sbjct: 118 ----KQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
Score = 31.3 bits (71), Expect = 1.3
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREES--KRAAQARKRERKKQKKLE----KKEEK 423
R+A +Q ++A + A + +K EE+ K AA A+ + + K+ K +
Sbjct: 110 RLAAQEQKKQAEEAAKQAALK---QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAE 166
Query: 424 RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR-----KRERKK 478
K E E A + A A K A E K E+K+ A+A E KK
Sbjct: 167 AKKKAEAE-----AAKKAAAEAKKKA----EAEAAAKAAAEAKKKAEAEAKKKAAAEAKK 217
Query: 479 QKKLEKKEEKRKAMEEEEEEEE 500
+ E K KA E + E
Sbjct: 218 KAAAEAKAAAAKAAAEAKAAAE 239
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 41.2 bits (97), Expect = 0.002
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQA-----ERANKNANILLEELDM 458
A+A + +++++ EK+ + + E + K + E N LEEL
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAME--EEEEEEEEVEVQEVEGEMMEEET 516
E + ES+ + R+ R K +K + + + +E E+E EE++ V+E+E ++ E
Sbjct: 451 EIEKLESEL-ERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509
Query: 517 EENDMHSSGGG 527
+ SG G
Sbjct: 510 -MRKLELSGKG 519
Score = 40.1 bits (94), Expect = 0.003
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEVIRVAKNQQAERAN 446
EE + KR +K ++ +E+ EE+ ++ E EE+ R + ++E
Sbjct: 402 RPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461
Query: 447 KNANILLEELDMEKWREESKRAAQARKRE-RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
E+ + ++ R +AR R + +K+LE+K+++ + +E + E ++
Sbjct: 462 -----FRREVRDKVRKD---REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513
Query: 506 EVEGEMME 513
E+ G+
Sbjct: 514 ELSGKGTP 521
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 41.2 bits (97), Expect = 0.002
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 24/176 (13%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ---KKLEKKEEKRKAMEEEEE 432
+ ER + L E + + E KR RER + + EK+E +A EE EE
Sbjct: 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569
Query: 433 VIRVAKNQQAERANKNANI-----------LLEELDMEKWREESKRAAQARKRERKKQKK 481
++ A I + + + E R KR A A + ++++
Sbjct: 570 AREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERL 629
Query: 482 LEKKEEKRK--------AMEEEEEEEEEVE--VQEVEGEMMEEETEENDMHSSGGG 527
EK+E KR+ +EE E++E E +++VE ++ E E +D+ + G
Sbjct: 630 AEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685
Score = 36.9 bits (86), Expect = 0.033
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQ-----KKLEKKEEKRKAMEE---EEEVIRVAKN 439
+EEL+ E E + + ER + ++E+ EE+R+ +EE E K
Sbjct: 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR 536
Query: 440 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
++AE + A L E + E+ RE AA+A + + ++++ + K ++E E
Sbjct: 537 ERAEELRERAAEL--EAEAEEKREA---AAEAEEEAEEAREEVAELNSKLAELKERIESL 591
Query: 500 EEVEVQEVEGEMMEEETEE 518
E + E+E E
Sbjct: 592 ERIRTLLAAIADAEDEIER 610
Score = 32.7 bits (75), Expect = 0.64
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 398 EESKRAAQARKRERKKQK---KLEKKEEKRKAMEEEEEVIRVAKNQ--QAERANKNANIL 452
E S + + ++ +LE EE+ + +EE E + ER + L
Sbjct: 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE-EEEEVEVQEVEGEM 511
E + + E KR RER + + E +E++ A E EEE EE EV E+ ++
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
Query: 512 MEEETE 517
E +
Sbjct: 582 AELKER 587
Score = 32.3 bits (74), Expect = 0.86
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ--ARKR 474
+E+ E+ + +E E E + + ER + +++ E +E+ E + + A +R
Sbjct: 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERR 529
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
E ++K+ E+ EE R E E E E E + EEE EE
Sbjct: 530 ETIEEKR-ERAEELR---ERAAELEAEAEEKREAAAEAEEEAEE 569
Score = 28.9 bits (65), Expect = 9.2
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRA-AQARKRER 476
++ EE R +EE + A N++AE ++A+ L E E+ REE+ ++ +
Sbjct: 321 DRDEELRDRLEECRVAAQ-AHNEEAESLREDADDLEER--AEELREEAAELESELEEARE 377
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
+ + E+ EE + +EE E + V E EE E
Sbjct: 378 AVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 40.2 bits (94), Expect = 0.003
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
E+ KK +K + + + E++E+++ + K E R K +
Sbjct: 11 EKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSS- 69
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGG 527
+ E EK + RK+ E + + E E EE E D +S GG
Sbjct: 70 --KPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGG 125
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 40.3 bits (94), Expect = 0.003
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 10/177 (5%)
Query: 389 EELDMEKWREESKRAAQARKRER-------KKQKKLEKKEEKRKAMEEEEEV-IRVAKNQ 440
E D+E ++E+ R A+ R+R + K E+ EK KA+ + +++ I AK +
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Query: 441 QAERANKNANILLE--ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
A A A L + E+ EE K A+A+ K K ++KR+ EE EE
Sbjct: 63 AAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEE 122
Query: 499 EEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAA 555
E+ + + G EE ++ + + ++ + K AA
Sbjct: 123 EKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAA 179
Score = 35.3 bits (81), Expect = 0.079
Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 14/201 (6%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK-------KLEKKEEKR 424
AK + + + E + K + ++ AA+A+ KQK E+K +
Sbjct: 69 AKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAK 128
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ A +Q + EE D EK + ++ AA+A+ KQK E
Sbjct: 129 AKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAE- 187
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
A E EE EE + + + + + +G G+ GD A + A
Sbjct: 188 ------AGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIA 241
Query: 545 SCSSNEVKTAAPNSRRKDKKK 565
+ + A ++ + KK
Sbjct: 242 AAKAKAAAAARAKTKGAEGKK 262
Score = 31.5 bits (71), Expect = 1.4
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query: 372 AKNQQAERA-NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 430
+N++ E+A KN ++ +EE +AA K +K E + + EE
Sbjct: 39 EENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAK----------QKREGTEEVTEE 88
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
E+ AK A +A A + E+ EE K AA+A+ K K ++KR+
Sbjct: 89 EKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKRE 148
Query: 491 AMEEEEEEEEEVE 503
EE EEEEE +
Sbjct: 149 GTEEVTEEEEETD 161
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 40.4 bits (95), Expect = 0.003
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
V K + I E E +E+ K + + + +L + E+ + +E+
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
E + + K + E LE L+ K + E K + +R + +K++E+ EEK
Sbjct: 229 EVKELEELKEEIEE-----LEKELESLEGSKRKLEEK-IRELEERIEELKKEIEELEEKV 282
Query: 490 KAMEEEEEEEEE 501
K ++E +E+ EE
Sbjct: 283 KELKELKEKAEE 294
Score = 39.3 bits (92), Expect = 0.007
Identities = 30/140 (21%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEK---KEEKRKAMEEEEEVIRVAKN-------Q 440
++++ +E K + ++ RK+ ++LEK KE + ++E E ++ + +
Sbjct: 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE 518
Query: 441 QAERANKNANILLEEL-----DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
+ E+ + L E+L +++ ++E ++ + +K+ + +KKL++ EE+ + +E
Sbjct: 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578
Query: 496 EEEEEEVEVQEVEGEMMEEE 515
EE V+E+E + E E
Sbjct: 579 LEELGFESVEELEERLKELE 598
Score = 37.7 bits (88), Expect = 0.017
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 386 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA 445
+EL + + A +R ++ + E +E ++K EEE E +R + + R
Sbjct: 616 REEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR-EEYLELSRE 674
Query: 446 NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK-RKAMEEEEEEEEEV-- 502
LEEL EK REE K+ + K E ++++K +K+ EK KA+E EE E+V
Sbjct: 675 LAGLRAELEEL--EKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKK 732
Query: 503 -----------EVQEVEGEMMEEETEE 518
+V E+ E+ EE TE
Sbjct: 733 YKALLKERALSKVGEIASEIFEELTEG 759
Score = 37.4 bits (87), Expect = 0.023
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 388 LEEL--DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA 445
L+EL E++ + S+ + R+ +K+L + EE+ +EE + + + + E
Sbjct: 285 LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
Query: 446 NKNANILLEELDMEKWRE--ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV- 502
K + ++E+ E E +A + KK+ E+ K +EE E+ +EE+
Sbjct: 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIE 404
Query: 503 -EVQEVEGEMMEEETEEND 520
E+ ++ + E + E +
Sbjct: 405 EEISKITARIGELKKEIKE 423
Score = 36.2 bits (84), Expect = 0.059
Identities = 31/133 (23%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+++ E+ +R + +K+ ++ +K+LE+ EE+ + EE + + + L
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
Query: 453 LEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV------Q 505
+EL+ +EK +EE + + KK + +E +KA+EE ++ + + V +
Sbjct: 390 EKELEELEKAKEEIEEEISKITARIGELKK--EIKELKKAIEELKKAKGKCPVCGRELTE 447
Query: 506 EVEGEMMEEETEE 518
E E++EE T E
Sbjct: 448 EHRKELLEEYTAE 460
Score = 35.8 bits (83), Expect = 0.069
Identities = 22/141 (15%), Positives = 58/141 (41%), Gaps = 2/141 (1%)
Query: 380 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN 439
+ E K E+ + + + +K+ ++LE+K ++ K ++E+ E
Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE 300
Query: 440 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE--KRKAMEEEEE 497
E ++ I +E+ + + + + ++ ++L+KK + +++ E EE
Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER 360
Query: 498 EEEEVEVQEVEGEMMEEETEE 518
E E + + E+ +
Sbjct: 361 HELYEEAKAKKEELERLKKRL 381
Score = 34.7 bits (80), Expect = 0.18
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI---------LLEELDM-----EKWRE 463
+ E K ++ E + + K ++ E I L EEL+ ++ E
Sbjct: 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
Query: 464 ESKRAAQARKRERKKQKKLEKKEEK----RKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ + K + K EEK + +EE ++E EE+E + E + ++E+ EE
Sbjct: 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Score = 33.9 bits (78), Expect = 0.29
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 394 EKWREESKRAAQARKRER---KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
++ RE KR ++ + ++ K+LE+KEE+ + ++++ + + + ER
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH----- 361
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
E + K ++E + R +K ++ EE KA EE EEE ++ + E +
Sbjct: 362 ---ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
Query: 511 MMEEETEEN 519
+E ++
Sbjct: 419 KEIKELKKA 427
Score = 33.1 bits (76), Expect = 0.45
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
++ E+ + L E+L K + E K + ++ + +KKL + E+K +EEE +
Sbjct: 518 EELEKKAEEYEKLKEKLI--KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575
Query: 435 RVAKNQQAERANKNANILLEEL-DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
+ E ++ L E L ++E + E A K +++K+L+K EE+
Sbjct: 576 ---LKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KA 631
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEEND 520
EE E E ++E+ E+ E E + ++
Sbjct: 632 FEELAETEKRLEELRKELEELEKKYSE 658
Score = 32.0 bits (73), Expect = 1.0
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
L EL+ + E + A ++ E + +E+ EE+ K +E K+ + E +
Sbjct: 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK---EEKRKAMEEEEEEEEEVEV 504
+ E +++K EE + + RK+ ++LEKK EE + EE E E+
Sbjct: 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
Query: 505 QEVEGEMMEEETEE 518
E E +E+ EE
Sbjct: 678 LRAELEELEKRREE 691
Score = 31.6 bits (72), Expect = 1.4
Identities = 25/131 (19%), Positives = 72/131 (54%), Gaps = 9/131 (6%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEK-RKAMEEEEEVIRVAKNQQAERANKNANI 451
+E++ E KR + K +K++KL K+ + K +++E E+I++ + + + +
Sbjct: 454 LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEK-- 511
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
L++ ++E+ ++++ + +++ K + +++ ++ E E+ EE + ++ E+E ++
Sbjct: 512 -LKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK-----ELEKLEELKKKLAELEKKL 565
Query: 512 MEEETEENDMH 522
E E E ++
Sbjct: 566 DELEEELAELL 576
Score = 29.3 bits (66), Expect = 6.6
Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLE--------KKEEKRKAMEEEEEVIRVAKN 439
L L EK +E + +A++ ++ K+ + +E +KA+EE ++
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440
Query: 440 QQAERANKNANILLEE--LDMEKWREESKRAAQARKRERKKQKKLEK--KEEKR------ 489
E ++ LLEE ++++ +E K + ++ RK+ ++LEK K+E
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500
Query: 490 --KAMEEEEEEEEEVEVQEVEGEMMEEET 516
+ ++E EE+ ++ ++E+E + E E
Sbjct: 501 LAEQLKELEEKLKKYNLEELEKKAEEYEK 529
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 39.7 bits (93), Expect = 0.003
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 406 ARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREES 465
K E+K+Q+ +E+K + M E + + + + + E D W
Sbjct: 206 EVKAEKKRQELERVEEKKLEKMAPEASRLD--EMSEGLLEESDDDGEEESDDESAWEGFE 263
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
K R K+K ++ ++++ E E E +EE
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEE 299
Score = 36.6 bits (85), Expect = 0.034
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 19/94 (20%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
KR +A++ + K++K+LE++ ++ K +++ K Q R + + +E+
Sbjct: 272 PVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK--------KLAQLARLKE----IAKEV 319
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
K A+ARK+E++K++ +KK ++RK
Sbjct: 320 A-------QKEKARARKKEQRKERGEKKKLKRRK 346
Score = 35.1 bits (81), Expect = 0.097
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGE 530
K E+K+Q+ +E+K + M E +E+ E + EE++++ S
Sbjct: 206 EVKAEKKRQELERVEEKKLEKMAPEASRLDEMS------EGLLEESDDDGEEES--DDES 257
Query: 531 GEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
EG + + KT A R K+K++K+L+
Sbjct: 258 AWEGFES-EYEPINKPVRPKRKTKA--QRNKEKRRKELERE 295
Score = 34.3 bits (79), Expect = 0.18
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 34/142 (23%)
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD---MEKWREESK-- 466
++ +K K E+KR+ +E EE +A R ++ + LLEE D E+ +ES
Sbjct: 201 EEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWE 260
Query: 467 ------------------------RAAQARKRER-----KKQKKLEKKEEKRKAMEEEEE 497
+ + ++ ER K+ KK + + K + +E
Sbjct: 261 GFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVA 320
Query: 498 EEEEVEVQEVEGEMMEEETEEN 519
++E+ ++ E E ++
Sbjct: 321 QKEKARARKKEQRKERGEKKKL 342
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional.
Length = 508
Score = 39.9 bits (93), Expect = 0.003
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)
Query: 379 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE-----EV 433
RA A E D + +E+K AA A RE K +K E+ KA + E +
Sbjct: 191 RAETLAR---EAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKA 247
Query: 434 IRVAKNQQA--------ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
+ AK +A ++A + A +LD K E+KRAA A +E K KK
Sbjct: 248 LAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAK-AAAAKK 306
Query: 486 EEKRKAMEEEEEEEEEVEV 504
E KA + + E V +
Sbjct: 307 AETAKAATDAKLALEPVSI 325
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 39.8 bits (93), Expect = 0.003
Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 2/175 (1%)
Query: 351 QTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 410
+ KC++ + Q + LEE + E + ++ + +K
Sbjct: 7 PIQTKPFTIPKCEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKEL 66
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL-EELDMEKWREESKRAA 469
+ +++L +++++K E++ + Q E A A LL E D E E +
Sbjct: 67 SQLEEQLINQKKEQKN-LFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDE 125
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
+++ +++ Q E E+KR+ + EE + E E + E +E E E +H +
Sbjct: 126 LSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEA 180
Score = 37.1 bits (86), Expect = 0.025
Identities = 26/146 (17%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
Q K + L E+L +K +++ Q ++ E Q ++ K E E+++ +
Sbjct: 57 QYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKEL 116
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+ + + E + + L ++ + + E+ + + K E +K+ + + E+ K E+
Sbjct: 117 ELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQ 176
Query: 495 EEEEEEEVEVQEVEG--EMMEEETEE 518
E ++E +E E E ++
Sbjct: 177 LHEANLDLEFKENEEQRESKWAILKK 202
Score = 34.0 bits (78), Expect = 0.21
Identities = 44/208 (21%), Positives = 77/208 (37%), Gaps = 29/208 (13%)
Query: 376 QAERANKNANILL-EELDMEKWREESKRAAQARKRERKKQKKLE---KKEEKRKAMEEEE 431
Q E A A LL E D E E + +++ +++ Q E KK E K E
Sbjct: 96 QDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERL- 154
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
K N E +E RE+ + + K+ E++ E + A
Sbjct: 155 ---------------KFENEKKLEESLELEREKFEEQLHE-ANLDLEFKENEEQRESKWA 198
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEE-------NDMHSSGGGRGEGEEGDSGIDANSQA 544
+ ++ + E+ Q+V+GE +E E +D++ G + + + S
Sbjct: 199 ILKKLKRRAELGSQQVQGEALELPNESFIRSKFPSDINEKADKGFRGFDCLNKVPIFSIQ 258
Query: 545 SCSSNEVKTAAPNSRRKDK-KKKKLDMR 571
E ++ ++ KD KK D R
Sbjct: 259 IEGKIEFESKRTKTKNKDWLKKLDADRR 286
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 38.7 bits (91), Expect = 0.004
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 24/118 (20%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN--QQAERANKNANILLEE 455
EE+K+ A+A K+E LE KEE K E E ++ +N Q+ E+ LL+
Sbjct: 41 EEAKKEAEALKKE----ALLEAKEEIHKLRAEAERELKERRNELQRQEKR------LLQ- 89
Query: 456 LDMEKWREE--SKRAAQARKRER---KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+EE ++ K+E +K+K+L ++++ + EEE EE E + QE+E
Sbjct: 90 ------KEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 37.9 bits (88), Expect = 0.004
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAK-NQQAERANKNANILLEELDMEKWREESKRAA 469
K K ++KE +++ E EE + AK + A R A E+ D E+ E+ +
Sbjct: 35 IKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPS 94
Query: 470 -------QARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
+ARKR+RK +KL + EE+ + + ++E+E+
Sbjct: 95 AVPQWGKKARKRQRKVIRKLLEAEEQLREDQYDDEDED 132
Score = 27.9 bits (62), Expect = 7.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 406 ARKRERKKQKKLEKKEEKRKAMEEEEE 432
ARKR+RK +KL + EE+ + + ++E
Sbjct: 103 ARKRQRKVIRKLLEAEEQLREDQYDDE 129
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 39.5 bits (92), Expect = 0.004
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
E D E ++ +KR ++A K+E LE KEE RK EE + + ++ER
Sbjct: 52 ERDAEHIKKTAKRESKALKKE----LLLEAKEEARKYREE------IEQEFKSER----- 96
Query: 450 NILLEELDMEKWREESKRAAQARKRER--KKQKKLEKKEE----KRKAMEEEEEEEEEVE 503
+EL + R + + RK E K+K LE KE+ K K ++E EE+ E++E
Sbjct: 97 ----QELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152
Query: 504 VQEVE-----GEMMEEETEE 518
Q+ + + E E
Sbjct: 153 EQKKAELERVAALSQAEARE 172
Score = 33.7 bits (77), Expect = 0.33
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 423 KRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
K K+ +E E+ + Q+A A E D E ++ +KR ++A K+E L
Sbjct: 25 KMKSAKEAAELTLLNAEQEAVNLRGKA-----ERDAEHIKKTAKRESKALKKE----LLL 75
Query: 483 EKKEEKRKAMEEEEEE--EEEVEVQEVEGEMMEEET 516
E KEE RK EE E+E E E++++E + E T
Sbjct: 76 EAKEEARKYREEIEQEFKSERQELKQIESRLTERAT 111
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 39.3 bits (92), Expect = 0.005
Identities = 21/76 (27%), Positives = 31/76 (40%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEG 534
E K + K + + E +E+E+EE E + E E E E E + S
Sbjct: 351 ESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Query: 535 DSGIDANSQASCSSNE 550
D G D+ S+A S
Sbjct: 411 DVGSDSESKADKESAS 426
Score = 28.9 bits (65), Expect = 8.9
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGE 530
R+ E E++ + E+ +E EE E ++ E E + + + SS G
Sbjct: 357 KRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416
Query: 531 GEEGDSGIDANSQAS 545
+ D ++S +
Sbjct: 417 ESKADKESASDSDSE 431
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 38.5 bits (89), Expect = 0.006
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM--HS 523
K+A A K+ K+ + E +EE+ EEEEEEE EVE E + E D S
Sbjct: 120 KKAGNAGKKATKEDESDEDEEEE----EEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGS 175
Query: 524 SGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPN 557
SGG GE E +S +A ++ + + T+
Sbjct: 176 SGGDNGEEGEEESVTEAEAEGTTVAGPTTTSPNG 209
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 38.9 bits (90), Expect = 0.007
Identities = 25/143 (17%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
WR+ + + ++ E ++++K ++ + E ++ +N + + A +
Sbjct: 139 NDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEA 198
Query: 454 E---ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
E +K +E + + +K+ +++K LE++E++RK E + + EE E + ++ E
Sbjct: 199 GKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEE 258
Query: 511 MMEEETEENDMHSSGGGRGEGEE 533
+ E + G E+
Sbjct: 259 IERRRAEAAEKRQKVPEDGLSED 281
Score = 38.9 bits (90), Expect = 0.007
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
E + ++ R A+ ++E K+ + E+++ KR ++EE K + E
Sbjct: 129 TEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSR 188
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV---- 504
+++ K E+ K+ Q E ++ KK K+EE+RK +EEEE+ ++ E
Sbjct: 189 GGAEGAQVEAGKEFEKLKQKQQEAALELEELKK--KREERRKVLEEEEQRRKQEEADRKS 246
Query: 505 -QEVEGEMMEEETE 517
+E E ++EE E
Sbjct: 247 REEEEKRRLKEEIE 260
Score = 31.9 bits (72), Expect = 1.1
Identities = 23/146 (15%), Positives = 58/146 (39%)
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
E + E +E A +Q E + + L E + + E+++ +
Sbjct: 61 ERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESR 120
Query: 481 KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
+ ++ E+ + + + E++ + + +E + E E E EE + G E +
Sbjct: 121 EEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLK 180
Query: 541 NSQASCSSNEVKTAAPNSRRKDKKKK 566
+++ + S + A + ++ +K K
Sbjct: 181 HTENTFSRGGAEGAQVEAGKEFEKLK 206
Score = 31.5 bits (71), Expect = 1.2
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN----ILL 453
++ + AA+ R+R R+++++L +K+E+ + +V ++N + +K + LL
Sbjct: 2 DDEEEAARERRR-REREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALL 60
Query: 454 EEL-DMEKWREESKRAAQARKRERKKQKKLEKKEE-KRKAMEEEEEEEEEVEVQEVEGEM 511
E L E+ R+E A R++E K + E R+ E+ E E VE +E E
Sbjct: 61 ERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESR 120
Query: 512 MEEETEEND 520
E E E
Sbjct: 121 EEREEVEET 129
Score = 29.6 bits (66), Expect = 5.3
Identities = 28/167 (16%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEE---EEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
+RE ++ ++ + E++K + + + ++ Q + +N + EE + +
Sbjct: 64 ARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREER 123
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E + + +K + +E +++ E E EEEE+ + +E E T +
Sbjct: 124 EEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTE 183
Query: 524 SGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNS---RRKDKKKKK 567
+ RG E + ++A + + + AA ++K ++++K
Sbjct: 184 NTFSRGGAE--GAQVEAGKEFEKLKQKQQEAALELEELKKKREERRK 228
Score = 29.2 bits (65), Expect = 7.3
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 355 DKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 414
+K +E + K + E +++ K E+ K+ Q E ++
Sbjct: 160 EKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEEL 219
Query: 415 KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 474
KK K+EE+RK +EEEE+ K ++A+R ++ EE K E +RA A KR
Sbjct: 220 KK--KREERRKVLEEEEQ---RRKQEEADRKSREE----EEKRRLKEEIERRRAEAAEKR 270
Query: 475 ER 476
++
Sbjct: 271 QK 272
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 38.7 bits (90), Expect = 0.008
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
+K REE R + ++ K K E+ + E+E + A + E + ++
Sbjct: 159 QKIREE--REKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQK--- 213
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E +RAA R+ + EE+R+ + +E+E EE VE + +
Sbjct: 214 ----------EERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHG 263
Query: 514 EETEENDMHSSG 525
E++E+ +
Sbjct: 264 EDSEDGETKPES 275
Score = 32.5 bits (74), Expect = 0.55
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 366 SMVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
M +K Q E L EL M W E +R +++E ++ + + +E
Sbjct: 202 DMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDE 261
Query: 425 KAMEEEEE 432
+ E+
Sbjct: 262 HGEDSEDG 269
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 38.3 bits (89), Expect = 0.009
Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 21/168 (12%)
Query: 382 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK----EEKRKAMEEEEEVIRVA 437
+ ++L + + E R R +E +++ + K E + EE + R
Sbjct: 96 ERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREV 155
Query: 438 KNQQAERANKNANILLEELDMEKWREESKRAA-----------QARKRERKKQKKLEKKE 486
Q+ + A + + ++WREE ++ Q + ER + L+
Sbjct: 156 GKQRGLLSRGLATFKRDRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLS 215
Query: 487 EKRKAM---EEEEEEEEEVEVQEVEGEMMEEETEEND---MHSSGGGR 528
+ + E+E E E ++E E+ E E + N + S GR
Sbjct: 216 QADFQLAGVAEKELETVEARIKEARYEIEELENKLNLNTRIVSQHSGR 263
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 38.7 bits (90), Expect = 0.009
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 29/130 (22%)
Query: 426 AMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK------- 478
A+ EEVI +Q + EE + K +E ++ +R + K
Sbjct: 380 AVSRLEEVISKYAMKQDDT---------EEEERRKRQERERQGTSSRSSDPSKASSTSGE 430
Query: 479 ------QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE-------ENDMHSSG 525
Q+ E++ + + EEEEEEEEE E +E EGE EEE E E +M S
Sbjct: 431 SPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSS 490
Query: 526 GGRGEGEEGD 535
G G+GEE +
Sbjct: 491 EGDGDGEEPE 500
Score = 31.4 bits (71), Expect = 1.7
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 10/163 (6%)
Query: 413 KQKKLEKKEEKRKAMEEEEEVIRVAKNQQA-ERANKNANILLEELDMEKWREESKRAAQA 471
KQ E+ EE+RK E E + + + + + + + E EE +
Sbjct: 394 KQDDTEE-EERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESE---EEESVEEEE 449
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME-----EETEENDMHSSGG 526
+ E +++++ E +EE+ + EEEEE E + +E E EE EE+ +
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSE 509
Query: 527 GRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLD 569
G + S S + + P S + ++ D
Sbjct: 510 MAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESD 552
Score = 29.9 bits (67), Expect = 5.1
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 4/160 (2%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
EE + + E +++++ E +EE+ + EEEEEV +++ + + EE +
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+ R S+ A +R E ++ + + E + EE + E E GE +EE
Sbjct: 501 EDAERRNSEMAGISRMSEGQQPRGSSVQPESPQ----EEPLQPESMDAESVGEESDEELL 556
Query: 518 ENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPN 557
+ S EG +S V T+ N
Sbjct: 557 AEESPLSSHTELEGVATPVETKISSSRKLPPPPVSTSLEN 596
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 38.2 bits (89), Expect = 0.009
Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 42/184 (22%)
Query: 394 EKWREESKRAAQARKRERKKQ-----KKLEKKE-EKRKAMEEEEEVIRVAKNQQAERANK 447
E + + ++ + K ++ KKLE + + ++ ME E
Sbjct: 109 EADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLER--------------- 153
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-KEEKRKAMEEEEEEEEEVEVQE 506
LEEL + Q+R+ + LE ++K EEEEEE+E +
Sbjct: 154 -----LEEL----------KELQSRRADVDVNSMLEALFRREKKEEEEEEEEDEALIKSL 198
Query: 507 VEGEMMEEE---TEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDK 563
G EE+ ++ D ++S A +S K+AA S
Sbjct: 199 SFGPETEEDRRRADDEDSEDDEEDNDNTPS--PKSGSSSPAKPTSILKKSAAKRSEAPSS 256
Query: 564 KKKK 567
K K
Sbjct: 257 SKAK 260
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 38.0 bits (89), Expect = 0.010
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 407 RKRERKKQKKLEKKEEK--RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
+K K ++EE+ KA EEE + K ++ ++ + A L +L E
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREA--KLAKLSPE----- 306
Query: 465 SKRAAQARKRERKKQKKLEKK 485
+ RK E K++KK +K
Sbjct: 307 -----EQRKLEEKERKKQARK 322
Score = 37.2 bits (87), Expect = 0.016
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 424 RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE 483
K EEEEE I K + ER + ++ + +K E+K A + + +RK ++K
Sbjct: 262 DKTREEEEEKIL--KAAEEERQEEAQ---EKKEEKKKEEREAKLAKLSPEEQRKLEEKER 316
Query: 484 KKEEKR 489
KK+ ++
Sbjct: 317 KKQARK 322
Score = 36.1 bits (84), Expect = 0.037
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 373 KNQQAERANKNANILLEEL---DMEKWREESKRAAQARKRERKK----------QKKLEK 419
+ + +K E++ E+ +EE++ + +K+E ++ Q+KLE+
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 420 KEEKRKA 426
KE K++A
Sbjct: 314 KERKKQA 320
Score = 36.1 bits (84), Expect = 0.037
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 438 KNQQAERANKNANILLEEL---DMEKWREESKRAAQARKRERKK----------QKKLEK 484
+ + +K E++ E+ +EE++ + +K+E ++ Q+KLE+
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 485 KEEKRKA 491
KE K++A
Sbjct: 314 KERKKQA 320
Score = 34.9 bits (81), Expect = 0.11
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
+K REE + E ++++ EKKEEK+K E + + E Q
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
Score = 31.8 bits (73), Expect = 0.86
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
K + ER + ++ + +K E+K A + + +RK ++K KK+ ++
Sbjct: 274 KAAEEERQEEAQ---EKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 29.9 bits (68), Expect = 3.8
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 460 KWREESKRAA-QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
K E R + R+ E +K K +EE+++ +E++EE+++ E + ++ EE
Sbjct: 252 KLSPEVLRKVDKTREEEEEKILK-AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 37.8 bits (88), Expect = 0.010
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 419 KKEEKRKAMEEEEEVIRVAKNQQAERANKNA--NILLEELDMEKWREESKRAAQARKRER 476
+++E + ME+ EE +R A+ + E L++ + E E K + R
Sbjct: 6 EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRR 65
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+++ +EE+ + E +E EV E E E E ET +
Sbjct: 66 LEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQ 107
Score = 34.7 bits (80), Expect = 0.095
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 393 MEKWREE-SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
E+ ++E +R Q + R+ QK+LE+ EE EE K +Q E +
Sbjct: 3 AEREQQELEERMEQMEEDMRRAQKELEEYEE-TALELEE-------KLKQEEEEAQLLEK 54
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+EL+ E R E + AA +RER + + E E K EE E++E E + E
Sbjct: 55 KADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELRE 114
Query: 512 MEEETEE 518
+E E
Sbjct: 115 AQEAHER 121
Score = 33.9 bits (78), Expect = 0.19
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 7/152 (4%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
+Q E + A LEE + E K + + + ++K E +EE R+ EE
Sbjct: 15 EQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASE 74
Query: 435 RVAKNQQAERANKNANILLEELDMEK-------WREESKRAAQARKRERKKQKKLEKKEE 487
+ +AE A + E + EK ++E + A +A +R R++ +
Sbjct: 75 EERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPT 134
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
+ E+ E + ET+ +
Sbjct: 135 APPHVAAPVNGEQLEPDDNGEEASADLETDPD 166
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 38.2 bits (89), Expect = 0.010
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAE-RANK-NANI 451
E+ REE + ++A +K ++EE++KA+ + ++ + + +A +I
Sbjct: 71 EERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSI 130
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+ L + EE KR + R + R ++ + R A E +E + + + +
Sbjct: 131 YIPLLKDKMQEEELKR--KIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSK 188
Query: 512 MEEET 516
+++T
Sbjct: 189 YKKKT 193
Score = 32.4 bits (74), Expect = 0.62
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+KW K RK + K+++ +K+ E+RK K + A + +
Sbjct: 268 TKKWESLVKFLRTERKEKEAKEQQEKKELEQRKK----------KKKEMAPKVKQRFEAN 317
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
+K +EE K ++E K+++K ++E
Sbjct: 318 DP---AQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 29.4 bits (66), Expect = 5.9
Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 398 EESKRAAQARKR----ERKKQKKLEKKEEKR-KAMEEEEEVIRVAKNQQAERANKNANIL 452
+ES +++ ++ L+ K + ++ E +++ + ++ E+ K
Sbjct: 234 QESHKSSSRTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEK 293
Query: 453 LEELDMEK----WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
E +K + K+ +A +K Q++ +++ K + E+E E+E E E
Sbjct: 294 KELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 38.2 bits (89), Expect = 0.010
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 5/113 (4%)
Query: 388 LEELDMEKWREESKRAAQ--ARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA 445
L++L + +++A +R +Q KL + E+RK + A ++ E
Sbjct: 170 LKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEEL 229
Query: 446 NKNANIL---LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
N + L + + + AA R + + ++ E K E
Sbjct: 230 RANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPE 282
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 38.4 bits (90), Expect = 0.010
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)
Query: 393 MEKWREESKRAAQA----RKRERKKQKK---LEKKEEKRKAMEE-EEEV-IRVAKNQQAE 443
EK ++ A+ K+E + KK LE KEE K E E E+ R + Q+ E
Sbjct: 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLE 82
Query: 444 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE-EEV 502
R L+ ME ++ + + K K+K L++KEE+ + + E+ EE E +
Sbjct: 83 RRLLQREETLDR-KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
Query: 503 ------EVQEVEGEMMEEETEE 518
E +E+ E +EEE
Sbjct: 142 SGLTQEEAKEILLEEVEEEARH 163
Score = 38.0 bits (89), Expect = 0.015
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER-ANKNANILLEELDMEKWREESKR 467
R+R +KKL EE K + EE + ++A A + + L EL+ E +E
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERE-LKERRNE 77
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE--------EVEVQEVEGEMMEEETEEN 519
+ +R ++++ L++K E EE E++E ++ +E E E + E E
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Query: 520 DMHSSG 525
SG
Sbjct: 138 LERISG 143
Score = 36.8 bits (86), Expect = 0.030
Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 349 YIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 408
+ + +K+L + +I AK ++AE K +L + ++ K R E +R + R+
Sbjct: 18 LRKRIAEKKLGSAEELAKRIIEEAK-KEAE-TLKKEALLEAKEEVHKLRAELERELKERR 75
Query: 409 RE-RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR 467
E ++ +++L ++EE ++ + E + K + E+ K + + LD ++
Sbjct: 76 NELQRLERRLLQREET---LDRKMESLD-KKEENLEKKEKELSNKEKNLD--------EK 123
Query: 468 AAQARKRERKKQKKLEK---------KEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+ + +++++LE+ KE + +EEE E ++E+E E EE
Sbjct: 124 EEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEE 179
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 38.5 bits (89), Expect = 0.010
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK--QKKLEKKEEKRKAMEEEE 431
R + + ++E E K+ ++ KR KK + E EE + + E+
Sbjct: 44 LAAGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNED 103
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ + R + A +++ EK + + R+R+K KK+++ E + +
Sbjct: 104 AALDKESKKTPRRTRRKAAAASSDVEEEK--------TEKKVRKRRKVKKMDEDVEDQGS 155
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
E + EE V +E E EE E D
Sbjct: 156 ESEVSDVEESEFVTSLENESEEELDLEKDDG 186
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 36.8 bits (85), Expect = 0.015
Identities = 21/114 (18%), Positives = 57/114 (50%)
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
E+ E + + K RE K+K + K+ + +E +E + + ++++
Sbjct: 77 EITFENNKGKLKLRLIEESRELTKKKGKKVKKSILEIVEIDELQEFIDELLKSDKEILPL 136
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ L + +E+ + + K + + K+ ++LE +++ + + EE+E+++E+E
Sbjct: 137 LLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELE 190
Score = 32.5 bits (74), Expect = 0.45
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
E K+ + +K + + E +E + ++ ++E++ + ER +
Sbjct: 94 ESRELTKKKGKKVKKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRK 153
Query: 454 EELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
E+ + +E+ +E + + K ++ EKK+E + EE EE EE+E
Sbjct: 154 EKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 37.8 bits (88), Expect = 0.016
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
K Q+ ++ K N+ L++ E + ++ K ++ K+KK +KK+ ++ E+E
Sbjct: 238 KKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDEL 297
Query: 432 EV-----------IRVAKNQQAERANKNANILLEELDMEKWREE----SKRAAQARKRER 476
E R ++ R + EE + + + E+ A+ R+ +
Sbjct: 298 EPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQEDDDFVEDDDDLQASLAKQRRLAQ 357
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
KK+KKL ++ R+ EE E+EEE G +++E +E
Sbjct: 358 KKRKKLRPEDIARQIAEERSEDEEEAAENNDNGIVIDETSE 398
Score = 32.4 bits (74), Expect = 0.69
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
+ E W++ + A RKRE ++K + +E++ +N +
Sbjct: 35 DAAAYENWKKRQEEAEAKRKREELREKIAKAREKR-------------ERNSKLGGIKTL 81
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
++ D + W ++SK+ + ++ ERKK L++KE++R A E+
Sbjct: 82 GEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEYTSED 130
Score = 30.5 bits (69), Expect = 3.0
Identities = 40/204 (19%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV--IRVAKNQQAERAN 446
++ D + W ++SK+ + ++ ERKK L++KE++R A E++ ++V + E
Sbjct: 87 DDDDTKAWLKKSKKRQKKKEAERKKALLLDEKEKERAAEYTSEDLAGLKVGHKVE-EFEE 145
Query: 447 KNANIL-------------LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK--- 490
IL +EL+ + E+ K + E KK+K ++ K
Sbjct: 146 GEDVILTLKDTGVLEDEDEGDELENVELVEKEKD---KKNLELKKKKPDYDPDDDDKFNK 202
Query: 491 ----AMEEEEEEEEEVEVQEV---EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQ 543
+ +EE E ++ + + + ++ E + + + + +D +S
Sbjct: 203 RSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKKRQEV---KKKLKINNVSLDDDST 259
Query: 544 ASCSSNEVKTAAPNSRRKDKKKKK 567
+ +S+ + +K KKKKK
Sbjct: 260 ETPASDYYDVSEMVKFKKPKKKKK 283
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 35.8 bits (83), Expect = 0.016
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 30/114 (26%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
RK++R+K+ + E KE++R+ EE + IR EE K
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRIR---------------------------EERK 62
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ + + +ERK+ KL ++E EE+ E E+ +V++ E E E T +
Sbjct: 63 QELEKQLKERKEALKLLEEEN---DDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 33.5 bits (77), Expect = 0.11
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+K +EE+K + + E +K+ + E+K+E K ++E +E + +E + + E E E E
Sbjct: 36 KKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTE 95
Query: 519 NDMHSSGGGRGEGEEGDSGID 539
+ G E D +
Sbjct: 96 DVEDDEWEGFPEPTVTDYEEE 116
Score = 32.7 bits (75), Expect = 0.20
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 472 RKRERKK--QKKLEKKE-----EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
RK++R+K Q++ ++KE E+RK + EE ++E E +++E + + E E +D +
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDA 89
Query: 525 GGGRGEGEEGDSGIDANS 542
E E D
Sbjct: 90 ETEDTEDVEDDEWEGFPE 107
Score = 31.1 bits (71), Expect = 0.66
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 466 KRAAQARKR---ERKKQKKLEKKEEKRKAMEEEEEE-EEEV-EVQEVEGEMMEEETEEND 520
KR Q RK+ E K++++ E+ EE+++ EE ++E E+++ E +E + EE +E D
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 521 MHSSGGGRGEGEEGD 535
+ E +E +
Sbjct: 89 AETEDTEDVEDDEWE 103
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 37.8 bits (88), Expect = 0.018
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK-NANI-LLEE 455
E K A + E+K +K+L+K E K + E+E E + A + ++ AN+ L+EE
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEE 335
Query: 456 LD--MEKWREE-----------SKRAAQARKRERKKQKKLEKKEE----KRKAMEEEEEE 498
+ SK ++ +R KK KKL+ + + ++E
Sbjct: 336 GLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAY 395
Query: 499 EEEVE--VQEVEGEMMEEETEE 518
E + +++ EG+ EE E
Sbjct: 396 YESAKTALEKAEGKKAIEEIRE 417
Score = 35.8 bits (83), Expect = 0.068
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEE--KRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
++SK ++ +R KK KKL+ + R+ E +E + + A + +
Sbjct: 356 DKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAE------GK 409
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
+E+ REE K ++KK+KK E E+ R
Sbjct: 410 KAIEEIREE-LIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 35.4 bits (82), Expect = 0.092
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
R + ++++ + +K K E + K ++ + A N + L EL
Sbjct: 338 KSVRLADFYGNEEIKIELDKSKTPSENAQRYFK-KYKKLKGAKVNLDRQLSEL------- 389
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ + K +K E +KA+EE EE E
Sbjct: 390 ------KEAIAYYESAKTALEKAEGKKAIEEIREELIE 421
Score = 31.6 bits (72), Expect = 1.3
Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 17/149 (11%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQ------ARKRERKKQKKLEKKEEKRKAME 428
+ ++ + A+ L ++L+ E + E+K Q K + ++K E + +E
Sbjct: 275 FERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIE 334
Query: 429 EEEEVIRVA----------KNQQAERANKNANILLE-ELDMEKWREESKRAAQARKRERK 477
E + +R+A + +++ ++NA + ++ + R K
Sbjct: 335 EGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIA 394
Query: 478 KQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+ + EK + + EE EE+ +
Sbjct: 395 YYESAKTALEKAEGKKAIEEIREELIEEG 423
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 36.0 bits (83), Expect = 0.019
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
R+ K+ K+E KQ+K E++E++ ++E E I ++K +Q ER + +
Sbjct: 66 RKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKL 120
Score = 30.2 bits (68), Expect = 1.5
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 402 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKW 461
R + ++ +R KK K+E K +E+E V + + AE+ K++ E
Sbjct: 17 REYKVKEIQRNLTKKARLKKEYLKLLEKEG--YAVPEKESAEKQVKSS--------KEDR 66
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+ E K+ +K E KQ+K E++E++ ++E E+ E + ++ E E
Sbjct: 67 KFEKKKKLDEKK-EIAKQRKREQREKELAKRQKELEKIELSKKKQKERE 114
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 37.3 bits (87), Expect = 0.019
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 12/131 (9%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
L K E + A RK Q E K + E ++++ ++ E
Sbjct: 42 LLFSKTAVEVTKLAAVDSELRKFQT-----REAAKVKDAEAQLLKDPAEKKREERKAAKK 96
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
I E E K E + ++EK E EE E V + + E +
Sbjct: 97 I--ERS--TPSLIERKTQEVKDSGEEIAEMM---RDEKVPIRELEEIPPEFVALYKQEIQ 149
Query: 511 MMEEETEENDM 521
N++
Sbjct: 150 SPTRLNLINEL 160
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 34.5 bits (80), Expect = 0.020
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 17/79 (21%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
LE+KEE+ + E+ E QQ E LEE ++++R ++ +A QA+ R
Sbjct: 19 LEQKEERLEQQEKAYE------KQQKEIKK------LEEF-IDRFRAKASKAKQAQSRI- 64
Query: 477 KKQKKLEKKEEKRKAMEEE 495
K LEK E K +E++
Sbjct: 65 ---KALEKMERIEKPVEKK 80
Score = 27.9 bits (63), Expect = 3.4
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ + QQ E LEE ++++R ++ +A QA+ R K LEK E K +E+
Sbjct: 31 KAYEKQQKEIKK------LEEF-IDRFRAKASKAKQAQSRI----KALEKMERIEKPVEK 79
Query: 430 E 430
+
Sbjct: 80 K 80
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase
(trigger factor) [Posttranslational modification,
protein turnover, chaperones].
Length = 441
Score = 37.3 bits (87), Expect = 0.021
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK-----RKAM-EEEEEVIRVAKNQQ 441
LEEL EK R+ +R + E++K++ L+ E +++ E E + + QQ
Sbjct: 262 LEELK-EKLRKNLERELKEATLEKRKEQLLDALVEANDFDLPESLVEAEIDNLLKQALQQ 320
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLEKKEEKRKAMEEE 495
++ ++ E+ REE K A+ R + K++KLE EE+ KA EE
Sbjct: 321 LQQQGIDSLEA-SGESEEELREEFKEEAEKRVKLGLLLEEIAKEEKLEVTEEEIKAEIEE 379
Query: 496 EEEEEEVEVQEVEGEMMEEETEENDM 521
+ E E ++ E D
Sbjct: 380 LARQYGGEQPEEVIKLYYNNQELLDA 405
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 36.4 bits (84), Expect = 0.022
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
E +E+W E K+ + K RK KK++K EE+ + +IR K+ + K
Sbjct: 14 EEILEQWVEARKKREELEKDLRKANKKIKKLEEENPWLGNVVGIIRKDKDGEGAPPAKRP 73
Query: 450 NILLEELDMEKWREESKRA-AQARKRERKKQKKLEKKEEKR----KAMEEEEEEE 499
E+D + +R+ +++K LE K+++ K + EEEEE
Sbjct: 74 RTDQMEVDSGPGKRPHAGGFTDQERRDHRRRKALENKKKQLSSGGKHLSREEEEE 128
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 37.5 bits (87), Expect = 0.022
Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 3/154 (1%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE-EVI 434
+A A I + + + ++ + + A++ + +L ++ + KA E E +
Sbjct: 280 EAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETL 339
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK--QKKLEKKEEKRKAM 492
+ ++ N E + E Q+ +RE K+ ++ +EKR
Sbjct: 340 AGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFE 399
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGG 526
+E EEE + + E +E E + ++
Sbjct: 400 DEAEEEARQRLADDEEEVRAGDEAREEKIAANSQ 433
Score = 30.6 bits (69), Expect = 2.9
Identities = 19/99 (19%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI-L 452
+ + AA ++ + K+ + E +EE R+ + ++EE +R +A AN +
Sbjct: 377 SQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAG--DEAREEKIAANSQV 434
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+++ ++ + A Q ++ R+KQ E+++ +
Sbjct: 435 IDKEEVCNLYDRRDTAWQKQRFLREKQTAFERQKTEHTK 473
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 37.3 bits (86), Expect = 0.024
Identities = 26/199 (13%), Positives = 60/199 (30%), Gaps = 9/199 (4%)
Query: 372 AKNQQAERANKNANILLEELDMEKW--REESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
AK + A A L +++ A + ++ L +E++ + +
Sbjct: 359 AKLAAEKLARVTAQGALNARLKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLST 418
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
+EE + KN A+ + A + K + A +E Q++ + K
Sbjct: 419 QEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQ-SRGKT 477
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSN 549
A E +E+ + ++ S + ++ A
Sbjct: 478 AAAERSQEQMTAALKA------LLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEE 531
Query: 550 EVKTAAPNSRRKDKKKKKL 568
+ + + KK+
Sbjct: 532 AKQRQLQEQKALLEHKKET 550
Score = 31.9 bits (72), Expect = 1.00
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
++A+ K A + E+ K +++ EK +++ + + EE
Sbjct: 468 QREAQSRGKTAAAERSQ---EQMTAALKALLAFQQQIADLSGAKEKASDQKSLLWKAEEQ 524
Query: 434 IRVAKNQQAERANKNANILLEELD-MEKWREE--SKRAAQARKRERKKQKKLEKKEEKR 489
+ K + +R + LLE ++ + QA + E Q +KE
Sbjct: 525 YALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGS 583
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 35.3 bits (82), Expect = 0.024
Identities = 22/110 (20%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
K E+ E + + +++ EE + K ++ + + + L+E + ++ R E K+A + +K
Sbjct: 19 KREEFERREELLKQREEELE-KKEEELQESLIKFDKFLKENEAKRRRAE-KKAEEEKKLR 76
Query: 476 RKKQKKLEKKEEKRKAMEEEEEE-EEEVEVQEVEGEMMEEETEENDMHSS 524
++K++++++ + + + ++ E E+ EE++E + E +E E +
Sbjct: 77 KEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPEFEE 126
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 36.9 bits (85), Expect = 0.025
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGE 532
K+E +K ++ EE+ AMEEE+++EE+ + + E E +++ ++ D
Sbjct: 33 KKENAIRKLGKEAEEE--AMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLH 90
Query: 533 EGDSGIDANSQASCSSNEVKTA 554
+ S D N + NE A
Sbjct: 91 DDSSADDGNE----TDNEAGFA 108
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 36.1 bits (84), Expect = 0.028
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA--NILLEE 455
E+ +R + RK +K+++K KK+E + E EE K+++ +NA NI+ +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 456 LDM-EKWREESKRAAQARKRERKKQ-KKLEKKEEKRKAMEEEEEEEEEVEVQE 506
++ + + + + +K+++K K+L KK E RK EE +E++ E++E
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEE 121
Score = 35.7 bits (83), Expect = 0.037
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR---VAKNQQAERANKNANILLEE 455
E +R + +++ RKKQK+ E K+++ E EEV +K + A N NI+ +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Query: 456 LDME-------------KWREESKRAAQARKRERKKQKKLE-KKEEKRKAMEEEE 496
++ K +++ Q K+ ++KKLE E+K +EE+E
Sbjct: 69 VEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKE 123
Score = 32.3 bits (74), Expect = 0.50
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ RKRE++K +K +K++E +K + ++ E EEV+ +E + + E +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
Score = 31.5 bits (72), Expect = 0.93
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
S+ A ++R +++Q+K KK+++++A ++E+ ++ E E + E
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEEN 48
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 36.6 bits (85), Expect = 0.032
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
K + A K + ++ R E + + +R +K+++L+ + EK +E +
Sbjct: 48 EKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQ- 106
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ--KKLEK--KEE 487
++ E+A + LEEL+ ++ E R A + +K K L+ +EE
Sbjct: 107 -------LEEREKALSARELELEELE-KQLDNELYRVAGLTPEQARKLLLKLLDAELEEE 158
Query: 488 KR---KAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
K K +EEE + E E + Q + + M+ E
Sbjct: 159 KAQRVKKIEEEADLEAERKAQNILAQAMQRIASE 192
Score = 36.2 bits (84), Expect = 0.046
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ 470
++++ E + ++A +E EE + A + E + N +E E REE +R
Sbjct: 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRE--REELQREE- 83
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEMMEEETEEND 520
+R +K+++L+ + EK +E + EE E+ + +E+E +EE ++ D
Sbjct: 84 --ERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE---LEELEKQLD 129
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 35.7 bits (83), Expect = 0.032
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ 470
RKK L K K EEE + + + + N LL+ELD E EE R +
Sbjct: 8 RKK-GILPPKPPSPKEEEEEALELAIQEAHE----NALEKKLLDELDEELDEEEDDRFLE 62
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
+R+R + K ++ K + E + + EV E +
Sbjct: 63 EYRRKRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTW 104
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 36.8 bits (85), Expect = 0.034
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 354 NDKELLDKCQECSMVIRVAKN--QQAERANKNANILLEELDMEKWREESKRAAQAR--KR 409
N+ EL ++ + + R K+ Q ++ N L + K +++ + + K
Sbjct: 428 NESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKS 487
Query: 410 ERKKQKKLEKK--EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDME-------- 459
E + EK+ EEK++ EEEE R A A R ++ + D+E
Sbjct: 488 EADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEH 547
Query: 460 --KWREESKRAAQARKRERKKQKKLEKKEE 487
K +EE R + +E +K ++ EK+ E
Sbjct: 548 DLKLKEEECRMLEKEAQELRKYQESEKETE 577
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 36.4 bits (85), Expect = 0.043
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
RK+ RKKQ+K EKK EK +A + + A ++A+ + + + EK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEK 464
Score = 36.4 bits (85), Expect = 0.044
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
ERKK +K ++K EK+ EE E+ + + + + + E
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 34.5 bits (80), Expect = 0.15
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
ERKK +K ++K EK+ EE E + A ++AE A K A
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAE---KAAAKKKAEAAAKKA 446
Score = 33.8 bits (78), Expect = 0.31
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
EE + + RK++RK +KK +KEE KA +++ E + + +GE
Sbjct: 399 EEGENGN--LSPAERKKLRKKQRKAEKK-AEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Score = 29.9 bits (68), Expect = 3.9
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 443 ERANKNANILLEELDME---KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+ L K R++ ++A + ++E ++ +KK E + + E
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 500 EEVEVQEVEGE 510
+ + GE
Sbjct: 453 TKKVDPDPLGE 463
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 35.6 bits (82), Expect = 0.045
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 8/145 (5%)
Query: 79 DTPLSLACSGGRY---EVVELLLTRGANKEHRNVSD-YTPLSLAAS-GGYVN--IIKLLL 131
+TP+ +C E+++ L+ GA+ + + + L S V I+K+L+
Sbjct: 52 ETPI-FSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILI 110
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
G+ I + + + N +KLL+D G + N N + F
Sbjct: 111 DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS 170
Query: 192 RHEVVSLLLDRKANVEHRAKTGLTP 216
++ L ++ K+G
Sbjct: 171 DKKIFDFLTSLGIDINETNKSGYNC 195
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 34.8 bits (80), Expect = 0.048
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 20 AGGHEELVEL--LLSRGADIEHR-DKKGFTPLILAATAGHDKV-----VDILLNHKADME 71
G EL+E+ +S + HR D G A +D+ +++L+N AD+
Sbjct: 30 TGNIYELMEVAPFISGDGHLLHRYDHHG--RQCTHMVAWYDRANAVMKIELLVNMGADIN 87
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
A+ T +T L +A S YE+ E L + G N N T +A ++++L
Sbjct: 88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEIL 147
Query: 131 LTHGAEINSRTGSKL 145
+GA + L
Sbjct: 148 RANGAVCDDPLSIGL 162
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 35.0 bits (81), Expect = 0.049
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
+++EK ++ R A+ E ++ + E ++ K +A E EE I
Sbjct: 2 MELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILR----------- 50
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKL-----EKKEEKRKAMEEEEEEE 499
+E + E+ R S +AR++ + ++++ E EEK + + + E E
Sbjct: 51 KAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASDPEYE 104
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 34.7 bits (80), Expect = 0.049
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 466 KRAAQARKRERKK------QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
K+A + +R++ K +K+ EK+E KA+ E E+E E+E ++ E ++M+EE +
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 28.9 bits (65), Expect = 3.8
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRV 436
EE + EK +EE R +A K++ +LEKK+ + K M+EE++++
Sbjct: 82 EEAEKEKEKEE--RFMKALAEAEKERAELEKKKAEAKLMKEEKKIMFA 127
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 36.2 bits (84), Expect = 0.050
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 482 LEKKE----EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGG 526
L++KE E+ A EEEEEEEEE E +E E+M E + +SGG
Sbjct: 391 LKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASGG 439
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 36.1 bits (83), Expect = 0.053
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
E+ L + ++ G T L A GY+++ LL+ GA+VNA V S+ T L
Sbjct: 202 EIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA--VMSNGYTCLD 259
Query: 254 IAADKG--------HCRFVELLLSKGAQVE 275
+A D+G H + +E+LL + ++
Sbjct: 260 VAVDRGSVIARRETHLKILEILLREPLSID 289
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 36.2 bits (83), Expect = 0.053
Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 344 QEMTRYIQTVNDKELLDKCQECSMVI-RVAKNQQ-AERANKNANILLEELDMEKWREESK 401
+++ IQ D L K E + V ++ + ++ E+ N++ ++ +++D +K +E
Sbjct: 958 KDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE--- 1014
Query: 402 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKW 461
R Q RK++ +L++ EE+ K +E ++V + +Q L E +D+ K
Sbjct: 1015 RWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEH------QKLEENIDLIK- 1067
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
R A R++ +K+ K KKE + + EE+ E
Sbjct: 1068 RNHVL--ALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
Score = 35.8 bits (82), Expect = 0.087
Identities = 39/193 (20%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ-- 414
EL + Q I+ AK Q + E+ ++ +E S + AQ + + K++
Sbjct: 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951
Query: 415 ------KKLEKKEE---KRKAMEEEEEVIRVAKN-----QQAERANKNANILLEELDMEK 460
K +E K + ++E E+ V + E+ N++ ++ +++D +K
Sbjct: 952 NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK 1011
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+E R Q RK++ +L++ EE+ K +E + + +++++ ++ E
Sbjct: 1012 IQE---RWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKR 1068
Query: 521 MHSSGGGRGEGEE 533
H GR +G E
Sbjct: 1069 NHVLALGRQKGYE 1081
Score = 33.9 bits (77), Expect = 0.28
Identities = 40/206 (19%), Positives = 91/206 (44%), Gaps = 11/206 (5%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
V ++ E+ NK L+ EK ++ + +R Q+ + ++ +++
Sbjct: 321 LVDCQRELEKLNKER----RLLNQEKTELLVEQGRLQLQADRH-QEHIRARDSLIQSLAT 375
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
E+ + +ER KN + L+ E ++ + ++ A + +ER KQ++ ++ +++
Sbjct: 376 RLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEK 435
Query: 490 KAM------EEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQ 543
K + ++E E+++ E++ V E+ + E + + + E S + NS
Sbjct: 436 KGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL 495
Query: 544 ASCSSNEVKTAAPNSRRKDKKKKKLD 569
EVK+ D+K +KLD
Sbjct: 496 TETLKKEVKSLQNEKADLDRKLRKLD 521
Score = 32.3 bits (73), Expect = 0.95
Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
K QE M ++ K + + I +E +E RE K + + K++E
Sbjct: 201 KVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIE-- 258
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREES------KRAAQARKR 474
+ + + I+ K+++ + N+ + L+ + + +E R++
Sbjct: 259 -HNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREK 317
Query: 475 ERKK---QKKLEKKEEKRKAMEEEEEE-EEEVEVQEVEGEMMEEETEENDM 521
ER+ Q++LEK ++R+ + +E+ E E +++ + +E D
Sbjct: 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDS 368
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 36.1 bits (83), Expect = 0.053
Identities = 32/180 (17%), Positives = 74/180 (41%), Gaps = 18/180 (10%)
Query: 392 DMEKWREESKRAAQARKRER--KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
+ +K E+ +K+++ K +KKL+ ++ ++ +++ + R
Sbjct: 228 ESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGR----- 282
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
E D S +A E ++ K + K + ++E+ EE E E E EG
Sbjct: 283 -----EEDYI-----SDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Query: 510 EMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLD 569
+ ++ + + G + ++ DSG D++ + V +++ KK++ +D
Sbjct: 333 GLSKKGKKLKKLKGKKNGL-DKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVD 391
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 36.2 bits (82), Expect = 0.055
Identities = 29/119 (24%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Query: 398 EESKRAAQARKRERKK-QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
E+ ++ + +K E+KK QK++ K E + + ++ + A+ +AE + A +E
Sbjct: 62 EQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAA----QEE 117
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
+ ++W+ E +R + ++++ KKL+ +++K KA++ E+ E+ E + +EEE
Sbjct: 118 EHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEE 176
Score = 30.4 bits (67), Expect = 3.3
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQAR--KRERKKQKKLEKKEEKRKAMEEEE 431
N Q + A + + + +EK ++ K+ AQ + K +QK KK +++A E
Sbjct: 48 NDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEA 107
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
E + A ++ + K +++ +K + K A+ +K + K +K EK E+ +KA
Sbjct: 108 EAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKA 167
Query: 492 MEEEEEEEEEV 502
EEE V
Sbjct: 168 STPAPVEEEIV 178
Score = 28.9 bits (63), Expect = 8.5
Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+V K +++E+ I + +K + +AR+ E + +K+ ++EE ++ E
Sbjct: 66 QVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAE 125
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
+E R+ K Q+ + A+ L++L EK +E++ +A +A K E+ K+
Sbjct: 126 QE---RIQKEQEKKEAD------LKKLQAEKKKEKAVKAEKAEKAEKTKK 166
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 35.1 bits (81), Expect = 0.057
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG--EMMEEETEENDM 521
++ + E +KL E+K K +E E+ +EE+ + +E E E +E+ +++D
Sbjct: 137 RKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 34.3 bits (79), Expect = 0.12
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 437 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 496
K + + + EE E+ +++ K+ + + EE K +EEE
Sbjct: 127 GKKLALSKFKRKVGLFTEEE------EDIDEKLSMLEKKLKELEAEDVDEEDEK--DEEE 178
Query: 497 EEEEEVEVQEVEGEMMEEETEENDM 521
EEEEE E ++ + + +++ + N
Sbjct: 179 EEEEEEEDEDFDDDDDDDDDDYNAE 203
Score = 29.0 bits (65), Expect = 6.9
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 473 KRERKKQKKLEKKEEKRK-AMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEG 531
+K KKL + KRK + EEEE+ + ++ +E ++ E E E+ D E
Sbjct: 121 GINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Query: 532 EEGD 535
EE +
Sbjct: 181 EEEE 184
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 36.1 bits (84), Expect = 0.060
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
EE+ + + +K+L+K EEK + +E E E + + A L +
Sbjct: 88 EENIEIEAQIE---ELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKY 144
Query: 458 MEKWREESKRAAQARKRERKKQKKLEK-KEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
E K ++ K+K L++ K A EE + +++ + E
Sbjct: 145 DSNLSEALKG---LNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPE 199
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 35.8 bits (83), Expect = 0.069
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQ------AERANKNANILLEELD 457
+ R+R ++ ++ L+ K+K EE+ +Q A A K A + L+ L
Sbjct: 603 TELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ 662
Query: 458 MEKWRE---------ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE-------EEE 501
E+ E K+ A+ + R+ Q K E+++A E ++ E
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQ--LLEQQQAFLEALKDDFRELRTERL 720
Query: 502 VEVQEVEGEMMEEETE 517
+ Q VEGE+ + +
Sbjct: 721 AKWQVVEGELDNQLAQ 736
Score = 35.8 bits (83), Expect = 0.075
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
LEE++ K RK ER KQK E+ E + E IR K++Q +
Sbjct: 361 LEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEE 420
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+ L +L + + + + + E +L + +++ + EE E++E+ +
Sbjct: 421 DLQALESQLRQQLEAGKLEFNEEEYELEL----RLGRLKQRLDSATATPEELEQLEINDE 476
Query: 508 EGEMMEEETE 517
E +EE E
Sbjct: 477 ALEKAQEEQE 486
Score = 29.7 bits (67), Expect = 6.3
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI----LL 453
E+ +R + + E+K+ ++ A+EE+ + + QQ E N L
Sbjct: 391 EQLERDLEKNNERLAAIR--EEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELE 448
Query: 454 EELDMEKWR--------EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
L K R EE ++ + K Q++ E+ E + ++ E
Sbjct: 449 LRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELR 500
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 35.4 bits (82), Expect = 0.069
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
E+ K K + K K+ + E ++ + + N EK E K
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMIS---DLKRKLKSKFERDN--------EKLDAEVKEKK 332
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ +K+E KK+K++E+ EE+ + +E + ++EE
Sbjct: 333 KEKKKEEKKKKQIERLEERIEKLEVQATDKEE 364
Score = 31.2 bits (71), Expect = 1.7
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
K+ME+ +E I+ A Q +R K +L + + + K K ER +K +
Sbjct: 277 KSMEKLQEKIK-ALKYQLKRLKKM---ILLFEMISDLKRKLKS-----KFERDNEKLDAE 327
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+EK+K ++EE++++++E E E +E + + +
Sbjct: 328 VKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKE 363
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 35.4 bits (82), Expect = 0.074
Identities = 28/111 (25%), Positives = 45/111 (40%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR 467
K + + +K K K E E Q E AN A ++EE + + +
Sbjct: 16 KLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAA 75
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+A++ KK + EK + E E+EE E E++ + E E EE
Sbjct: 76 EEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEE 126
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 36.0 bits (83), Expect = 0.077
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 41/161 (25%)
Query: 388 LEELDMEKWREESKRAAQAR-----------KRERKKQKKLEKKEEKRKAMEEE------ 430
L++LD E + E R R K R+ KK K+ +KA E E
Sbjct: 1165 LDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Query: 431 -----------EEVIRVAKNQQAERANKNANILLEELDME-------KWREESKRAAQAR 472
E V + ++A A EE ++ + +S A A+
Sbjct: 1225 GSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAK 1284
Query: 473 KRERKKQ--KKLEKKEEKRKA----MEEEEEEEEEVEVQEV 507
E K + +K A + + ++++++ V+
Sbjct: 1285 MEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVS 1325
Score = 35.6 bits (82), Expect = 0.084
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 453 LEELDMEKWREESKRAAQARKRER-------KKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
L++LD E + E R R R K ++ KK +K ++ E E E
Sbjct: 1165 LDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETY 1224
Query: 506 EVEGEMMEEETEE 518
E E
Sbjct: 1225 GSSAMETENVAEV 1237
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 35.0 bits (80), Expect = 0.082
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQ---EVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
E++E ++ EEEE+EEV E E+ EEE EE + G + E
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGER 232
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.4 bits (82), Expect = 0.082
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEK-RKAMEEEEEVIRVAKNQQAERANK 447
EEL EK +E+ + + ++ +K+++K +K+ EK KA E + +++ +
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDET 610
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKL-EKKEEKRKA 491
+ + D E E SK+ + +E KQ KL E+ K
Sbjct: 611 --GLPTHDADGE---EISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
Score = 34.2 bits (79), Expect = 0.21
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 492
EEL EK +E+ + + ++ +K+++K +K+ EK +
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 34.2 bits (79), Expect = 0.24
Identities = 15/61 (24%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 448 NANILLEELDMEK--WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
N I +E+ W+ + K + +RE+++++ L++++ RK ++EE++++E+E
Sbjct: 530 NLGIRIEDKPDGPSVWKLDDK---EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Query: 506 E 506
E
Sbjct: 587 E 587
Score = 30.0 bits (68), Expect = 4.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
RE+ ++ A ++ +K KK +EEK+K E+ E+
Sbjct: 555 REKEEKEALKEQKRLRKLKK---QEEKKKKELEKLEK 588
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 34.1 bits (78), Expect = 0.088
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 439 NQQAERANKNANILLEELDMEKW-REESKRAAQARKRERKKQKKL--EKKEEKRKAMEEE 495
++ K LLE + + W +E+ + + K E+++ + E+ EE+ + E+
Sbjct: 9 PEKKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDI 68
Query: 496 EEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKT 553
E+EEE VE +E E EE+ E+N + + +S D N+Q S N K
Sbjct: 69 EDEEEIVEDEEEE----EEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKN 122
Score = 29.4 bits (66), Expect = 2.9
Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 374 NQQAERANKNANILLEELDMEKW-REESKRAAQARKRERKKQKKL--EKKEEKRKAMEEE 430
++ K LLE + + W +E+ + + K E+++ + E+ EE+ + E+
Sbjct: 9 PEKKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDI 68
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWRE--ESKRAAQARKRERKKQKKLEKKEE 487
E+ + ++++ E ++ N+ L++++ + + S + A+ K KK EK ++
Sbjct: 69 EDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKSKK 127
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 35.6 bits (82), Expect = 0.093
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK--KEEKRKAMEE 429
A ++ E+ N++ LL+E + K +E + + ++RER K+ +LEK +E + +E
Sbjct: 522 ALEKELEQKNEHLEKLLKEQEKLK-KELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
E +IR K ++ +A +E K K + KQK +K
Sbjct: 581 VESIIRELKEKKIHKA-----------------KEIKSIEDLVKLKETKQKIPQKP 619
Score = 33.6 bits (77), Expect = 0.37
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 432 EVIRVAKNQQAERANKNANILLEEL-DMEKWREESKRAAQARKRERKKQKK-LEKKEEKR 489
+I AK E + N+L+E+L +EK E+ + +E++K KK LE++ E+
Sbjct: 497 FIIEQAKTFYGEFKEE-INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEE 514
K E ++ E E E QE + +E
Sbjct: 556 KERERNKKLELEKEAQEALKALKKE 580
Score = 32.1 bits (73), Expect = 0.92
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
E+ K E KEE +E+ + + + E+ N++ LL+E + K E +
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEK-----ELEQKNEHLEKLLKEQEKLKKELEQEMEE 554
Query: 470 -QARKRERKKQKKLEKKEEKRKAMEEEEE 497
+ R+R +K + + E +E + +E E
Sbjct: 555 LKERERNKKLELEKEAQEALKALKKEVES 583
Score = 30.6 bits (69), Expect = 2.8
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR 467
K +++ +K E K ++E+E++ + + + E L+E + K E K
Sbjct: 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE---------LKERERNKKLELEKE 569
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
A +A K +K E + R+ E++ + +E++ E ++ E + +
Sbjct: 570 AQEALKALKK-----EVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQK 614
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 34.9 bits (80), Expect = 0.093
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 382 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQ 441
K I ++E + E +E++ RK E +K++ L+ EE+ K E + K
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELK------KRNT 97
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE---EKRKAMEEEEEE 498
AN + +E + E++ R + KR+R++++++E+++ EK + M EEE
Sbjct: 98 LLEANIDDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKMRNMTEEERR 157
Query: 499 EEE 501
E
Sbjct: 158 AEL 160
Score = 30.7 bits (69), Expect = 2.2
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
R++ + Q R+RE K+K LE+ E KRKA E + E +++ + + + L E
Sbjct: 43 RKKDRITIQEREREAAKEKALEE-EAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEA 101
Query: 457 DMEKWR---EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
+++ E + +A K K+ K ++ E+R+ ME E+ E E++ M E
Sbjct: 102 NIDDVDTDDENEEEEYEAWKLRELKRIKRDR--EEREEMEREKAEIEKMR------NMTE 153
Query: 514 EETEEND 520
EE
Sbjct: 154 EERRAEL 160
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 35.0 bits (81), Expect = 0.094
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
++ E E K + + E ++A+ ++ + +++LD E R E K
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEE 500
+ +EE+ +A E E
Sbjct: 62 PAASGEGG-GGEEEEEEAKAEAAEFRA 87
Score = 31.9 bits (73), Expect = 1.0
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
E +E + +E ++ K +AE + L EE+D + +++ +
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEID----KLDAEIDRLEELLDEL 58
Query: 478 KQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ K E EEEE + E E
Sbjct: 59 EAKPAASGEGGGGEEEEEEAKAEAAE 84
Score = 28.9 bits (65), Expect = 7.5
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
A+ ++AE I ++LD E R E K + ++EE+ E E
Sbjct: 27 AEEEKAEYDALKEEI--DKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAEAAE 84
Query: 432 EVIRVAKNQQAERANKNA 449
+ A + A
Sbjct: 85 FRAYLRGGDDALAEERKA 102
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 35.3 bits (82), Expect = 0.095
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
K R+ + +K +KR + + + + + + LEEL + E SK
Sbjct: 4 LKLIRENPDAVREKLKKRGGDALDVDKLL-----ELDEERRKLLRELEEL-QAERNELSK 57
Query: 467 RAAQARKRERKK-QKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
+A KR ++ + + +E ++ ++E E +E+E +
Sbjct: 58 EIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 29.1 bits (66), Expect = 7.4
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 371 VAKNQQAERANKNANILLEELDMEKWREESKR--AAQARKRERKKQKKLEKKEEKRKAME 428
V + + + L ELD E+ R+ + QA + E K+ K + A E
Sbjct: 14 VREKLKKRGGDALDVDKLLELD-EERRKLLRELEELQAERNELSKEIGRALKRGEDDAEE 72
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDME 459
EV + + K L+EL+ E
Sbjct: 73 LIAEVKELKEKL------KELEAALDELEAE 97
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 35.2 bits (81), Expect = 0.099
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 412 KKQKKLEKKEEK-RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ 470
K+Q+ L++ +K + ++ EV K++ A E+L E+ ++ K A
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEV----KDETDASEEAEAKAKEEKLKQEENEKKQKEQAD 421
Query: 471 ARKRERKKQKK 481
K +R+K ++
Sbjct: 422 EDKEKRQKDER 432
Score = 30.5 bits (69), Expect = 2.3
Identities = 9/74 (12%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
+K++E K ++ + + + + + + + + ++ Q +++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEE--------AEAKAKEEKLKQEENEKKQ 416
Query: 478 KQKKLEKKEEKRKA 491
K++ E KE+++K
Sbjct: 417 KEQADEDKEKRQKD 430
Score = 29.4 bits (66), Expect = 6.0
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 342 SDQEMTRYIQTVNDK--ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREE 399
S + ++ N K + K E K++ A E+L E+ ++
Sbjct: 363 SGDKRQELLKEYNKKLQDYTKKLGE-------VKDETDASEEAEAKAKEEKLKQEENEKK 415
Query: 400 SKRAAQARKRERKKQKK 416
K A K +R+K ++
Sbjct: 416 QKEQADEDKEKRQKDER 432
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 34.6 bits (80), Expect = 0.11
Identities = 19/101 (18%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 387 LLEELDMEKWREESKRAAQARKRERK--KQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
LL E +K EE+++ + +K ++ +K E+ +EK+ +E+ +++ + K +
Sbjct: 124 LLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKK--KRKGGGD 181
Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
+ L+++ +++ ++ AR + K+K + K
Sbjct: 182 EGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAK 222
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 34.8 bits (80), Expect = 0.12
Identities = 44/255 (17%), Positives = 91/255 (35%), Gaps = 49/255 (19%)
Query: 361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ------ 414
K E +IR KN + + N + EE++ K + + A + + K
Sbjct: 17 KGFERQKLIRRIKNAEKKSKNDKLARIEEEIEALKTLDLDQLAKKYLFSKLIKVITSKPT 76
Query: 415 ----------KKLEKKEEKRKAMEEEEEVIRVAKNQ-QAERANKNANILLEELDMEKWR- 462
+ + K K E EV+ K+ N+ + L+
Sbjct: 77 KAWAESPEFRQIINDKSHKANPSRSEAEVVEKLKSLNNVVSRLLNSKPVKNVLESIMEGL 136
Query: 463 ----------EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
++ K + +K ++K+ K+ K+++ ++ E E+E + E ++ +
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEES-ESEDESKSEESAEDDSDDEE 195
Query: 513 EEETEEND------MHSSGGGRGEGEEG--------------DSGIDANSQASCSSNEVK 552
EE+++ D M EGEE D S++ S+ +
Sbjct: 196 EEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEE 255
Query: 553 TAAPNSRRKDKKKKK 567
++ P+ + K+KK
Sbjct: 256 SSPPSKKPKEKKTSS 270
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 33.0 bits (76), Expect = 0.14
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 457 DMEKWREESKRAAQARKRERKKQKK----LEKKEEKRKAMEEEEEEEEE-----VEVQEV 507
D+E+ REE +R + ++R+ +K+K+ L +KEE+ K +EE E+ + + + ++
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDY 72
Query: 508 EGEMMEEETEENDMHS 523
+ E+ E+E ++ M
Sbjct: 73 DEELKEQERWDDPMAQ 88
Score = 31.9 bits (73), Expect = 0.43
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 392 DMEKWREESKRAAQARKRERKKQKK----LEKKEEKRKAMEEEEEVI 434
D+E+ REE +R + ++R+ +K+K+ L +KEE+ K +EE E+
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAK 59
Score = 31.1 bits (71), Expect = 0.80
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
R R + +++++ +++E++ K E +EE+E+E V+ E E+ EE +
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEK--ERKEEKEKEWGKGLVQKEEREKRLEELE 56
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 34.8 bits (80), Expect = 0.14
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 482 LEKKEE---KRKAMEEEEEEEEEVEVQEVEGEMMEEETE-----ENDMHSSGGGRG 529
L++K +R A EEEEEEEEE E MEE E M ++GGG G
Sbjct: 390 LKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPAAGGGGG 445
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 33.4 bits (77), Expect = 0.14
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
A+A + + + Q L + E++ + E+ I E+A K A + EE+
Sbjct: 47 AEAERLKEEAQALLAEYEQELEEAREQASEII-------EQAKKEAEQIAEEI------- 92
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
K A+ K+ + E + EK +A+EE E E+ V E + ++
Sbjct: 93 --KAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKK 141
Score = 31.1 bits (71), Expect = 0.84
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
+AER + A LL E E+ EE++ A + KK+ + +E K +A EEE+ R
Sbjct: 48 EAERLKEEAQALLAEY--EQELEEAREQASEIIEQAKKEAEQIAEEIKAEA---EEELER 102
Query: 436 VAKNQQAE 443
+ + +AE
Sbjct: 103 IKEAAEAE 110
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 34.7 bits (79), Expect = 0.15
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ K REE A + KRE +++ + E++ EK K E E E E E E
Sbjct: 577 LAKKREE---AVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 33.1 bits (75), Expect = 0.55
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
+ K REE A + KRE +++ + E++ EK K E E E + ++AERA K
Sbjct: 577 LAKKREE---AVEKAKREAEQKAREEREREKEKEKERERE-----REREAERAAK 623
Score = 32.4 bits (73), Expect = 0.91
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
A+KRE +K K+E ++KA EE E E+E+ + +E E E E E SS
Sbjct: 578 AKKREEAVEKA--KREAEQKAREEREREKEKEKERERE---REREAERAAKASS 626
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 32.6 bits (75), Expect = 0.17
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E K A+ + + KKQ++ + + EK M EE+ E E+E E E E +E E ++
Sbjct: 12 EVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARREL 70
Score = 29.1 bits (66), Expect = 2.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
E K A+ + + KKQ++ + + EK M EE+ + + E A + EL
Sbjct: 12 EVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELK 71
Query: 458 MEK 460
E
Sbjct: 72 AEA 74
Score = 28.0 bits (63), Expect = 7.5
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+ K + + ++ + +K E +K K+ +E+ +E+ E+E EE+E + E+ E
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 33.3 bits (77), Expect = 0.17
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 28/91 (30%)
Query: 400 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDME 459
K+A +A+K +RK++K+ ++ A + ++E+ + A+ +AE+A
Sbjct: 14 KKKAKKAKKEKRKQRKQ-----ARKGADDGDDELKQAAEEAKAEKA-------------- 54
Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRK 490
+ R+ R++Q + E+K +
Sbjct: 55 ---------ERDRELNRQRQAEAEQKAIVAQ 76
>gnl|CDD|218701 pfam05698, Trigger_C, Bacterial trigger factor protein (TF)
C-terminus. In the E. coli cytosol, a fraction of the
newly synthesised proteins requires the activity of
molecular chaperones for folding to the native state.
The major chaperones implicated in this folding process
are the ribosome-associated Trigger Factor (TF), and the
DnaK and GroEL chaperones with their respective
co-chaperones. Trigger Factor is an ATP-independent
chaperone and displays chaperone and
peptidyl-prolyl-cis-trans-isomerase (PPIase) activities
in vitro. It is composed of at least three domains, an
N-terminal domain which mediates association with the
large ribosomal subunit, a central substrate binding and
PPIase domain with homology to FKBP proteins, and a
C-terminal domain of unknown function. The positioning
of TF at the peptide exit channel, together with its
ability to interact with nascent chains as short as 57
residues renders TF a prime candidate for being the
first chaperone that binds to the nascent polypeptide
chains. This family represents the C-terminal region of
the protein.
Length = 162
Score = 33.4 bits (77), Expect = 0.17
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK------RKAMEEEEEVIRVAKNQQ 441
LEEL EK R++ + + E K+ L+K E +EEE + + QQ
Sbjct: 2 LEELK-EKLRKQLEEEKKEATAEELKEAILDKLVENAEIELPESLVEEEIDRLLRQFLQQ 60
Query: 442 AERANKNANILLEE--LDMEKWREESKRAAQARKRER------KKQKKLEKKEEKRKAME 493
+ + L E+ REE K A+ R + K++K+E +E+ K
Sbjct: 61 LQGQGLDLEEYLSLSGSSEEELREEFKEEAEKRVKLGLILEEIAKEEKIEVTDEEIKEEI 120
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEEN 519
EE + +E +EV+ + E
Sbjct: 121 EELASQYGMEPEEVKEFYKKNEQLSA 146
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 34.6 bits (80), Expect = 0.17
Identities = 23/154 (14%), Positives = 63/154 (40%), Gaps = 2/154 (1%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
I+ A + + + +L+ M K +++ + +K+ + K K +K ++
Sbjct: 38 IKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Query: 429 EEEEVIRVA--KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
+E + + A KN + + N ++ L+ ++ + E +
Sbjct: 98 DELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDD 157
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
E + ++E+EE+ E +E+E +++ ++
Sbjct: 158 EDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Score = 31.5 bits (72), Expect = 1.2
Identities = 22/129 (17%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 395 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN--KNANIL 452
EE+K+ + + + K K KEE ++A+E +++ + K+ +
Sbjct: 11 AAEEEAKKKLK-KLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
E +K + + +AA A+ +KK K +K + +++++ V++++
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Query: 513 EEETEENDM 521
++ +++D
Sbjct: 130 ADDDDDDDD 138
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 33.8 bits (78), Expect = 0.18
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEK--RKAMEEEEEVIRVAKNQQAERANKNANILLE 454
R+ + A+A K E K + L+ E R+A+EE++ + +AK +AE +
Sbjct: 59 RKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKL 118
Query: 455 ELDMEKWREE------SKRAAQARKRERKKQKKLEKKEEKRK---AMEEEEEEEEEVEVQ 505
+ + ++ K A +ARK K Q+K+ + AM E EE++E +
Sbjct: 119 KKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEER 178
Query: 506 EVEGEMMEEETEEND 520
E E E E +
Sbjct: 179 EARAEAAAELAEGSG 193
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 33.9 bits (77), Expect = 0.18
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+ ++ + Q + + ++ E K E+++ EE+EEEE E E ++ EG+ ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 28.9 bits (64), Expect = 7.0
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEE-EEEEEVEVQEVEGEMMEEETEEND 520
Q + + K+++ L K +E + + EE + +EE E +EVE E +EE + D
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 34.4 bits (79), Expect = 0.19
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 23/157 (14%)
Query: 375 QQAERANKNA--NILLEELDMEK----WREESKRAAQARKRERKKQKKLEKKEEK----R 424
++AE+A A I E+ E+ + R + ER+K+ +LE +E
Sbjct: 287 REAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINA 346
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK--QKKL 482
+ +EE A +A A A + E ++ +A + E+
Sbjct: 347 AQRQAQEEAKAAANIAEAIGAQAEAAV-----------ETARETEEAERAEQAALVAAAE 395
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
++E+ + E + E E Q E + E E
Sbjct: 396 AAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREK 432
Score = 32.9 bits (75), Expect = 0.48
Identities = 25/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKR------ERKKQKKLEKKEEKRKAME 428
++ E A AN + +++E ++ + + A+ + E + + K E +R+A +
Sbjct: 232 KETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQ 291
Query: 429 EEEEVIRVA--KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
E + + QAE+ ++A L E +R + +++ + +
Sbjct: 292 AEILAEQAIQEEKAQAEQEVQHAKALEAR---EMRVGLIERQKETELEPQERSYFINAAQ 348
Query: 487 EKRK-AMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ + + E + Q ETEE +
Sbjct: 349 RQAQEEAKAAANIAEAIGAQAEAAVETARETEEAE 383
Score = 32.5 bits (74), Expect = 0.65
Identities = 28/231 (12%), Positives = 65/231 (28%), Gaps = 31/231 (13%)
Query: 368 VIRVAKNQQAERAN------KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 421
+ N+ A+ + +++ E++ A K E +++ + +
Sbjct: 236 IAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEIL 295
Query: 422 EKRKAMEE--------------EEEVIRVAKNQQA---ERANKNANILLEELDMEKWREE 464
++ EE E +RV ++ E + + + + E
Sbjct: 296 AEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEA 355
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV----EVQEVEGEMMEEETEEND 520
A A + + +E E +A E+ E ++VE + E +
Sbjct: 356 KAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEA 415
Query: 521 MHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
+ + E E I +A + A +
Sbjct: 416 EAQAAEIKAEAE----AIREKGKAEAEAKRALAEAIQVLGDAAAAELFKAL 462
Score = 31.7 bits (72), Expect = 1.2
Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 17/197 (8%)
Query: 343 DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
+ R KE + QE S I A+ Q E A ANI +
Sbjct: 318 EAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGA-----QAEAA 372
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
AR+ E ++ + +A E+E+ + +A +A +A A + + E R
Sbjct: 373 VETARETEEAERAEQAALVAAAEAAEQEQ--VEIAVRAEAAKAEAEAQAAEIKAEAEAIR 430
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND-- 520
E+ K A+A ++ L + + E + V+ E + + D
Sbjct: 431 EKGKAEAEA-------KRALAEAIQVLGDAAAAELFKALVQALPEVAEEAAQPMKNIDSE 483
Query: 521 -MHSSGGGRGEGEEGDS 536
+ GG G G
Sbjct: 484 KVRVIGGANGGSTAGKV 500
Score = 30.6 bits (69), Expect = 2.5
Identities = 17/106 (16%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN------KNANILLEELDMEKWREE 464
R+ + L+ E E+E E+ N+ A+ + +++ E
Sbjct: 214 RRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAE 273
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
++ A K E +++ + + ++ EE+ + E+EV+ +
Sbjct: 274 TEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEA 319
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 33.9 bits (77), Expect = 0.19
Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 20/215 (9%)
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+V ++ L A + V ++ LL GA N PL AA T VK+LL
Sbjct: 27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLENE----FPLHQAATLEDTKIVKILLF 82
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGL-TPLMEAASGGYV 226
G D ++Q + NTAL A G + V L + + + KTG T A V
Sbjct: 83 SGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 141
Query: 227 EVGRVLLDKGADVNAPPVPSSRDTALT-----IAADKGHCRFVELLLSKGAQVEVKNKKG 281
+ L + +PS+ D A+ I GH + LLL N
Sbjct: 142 SIVSYFLSE--------IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 193
Query: 282 NSP-LWLAANGGHLSVVELLCKHGADIDSQDNRKV 315
P + LA + L +++ L K+ +I S + V
Sbjct: 194 FIPDIKLAIDNKDLEMLQALFKYDINIYSVNLENV 228
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 34.2 bits (78), Expect = 0.20
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 470 QARKRERKKQKKLEKKE-------EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
QA +R + + + +A+ E+ + E + + E E+ E
Sbjct: 32 QAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGG 91
Query: 523 SSGGGRGEGEEGDSG 537
SG G
Sbjct: 92 PSGSGSESVGSPTPS 106
Score = 30.3 bits (68), Expect = 2.7
Identities = 9/82 (10%), Positives = 18/82 (21%), Gaps = 7/82 (8%)
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
+ + ES R +K+++ + + E + E
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPE 121
Query: 516 TEENDMHSSGGGRGEGEEGDSG 537
G E S
Sbjct: 122 NT-------SGSSPESPASHSP 136
Score = 29.6 bits (66), Expect = 5.2
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 11/131 (8%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
QA +R + K +V VA+ + + E + + E+
Sbjct: 32 QAGRRRGTAARA--AKPAPPAPTTSGPQVRAVAEQGHRQTESDT-----ETAEESRHGEK 84
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
+R + EE + + G E + S
Sbjct: 85 EERGQGGPSGSGSESVGSPTPSPS----GSAEELASGLSPENTSGSSPESPASHSPPPSP 140
Query: 525 GGGRGEGEEGD 535
G E
Sbjct: 141 PSHPGPHEPAP 151
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 33.1 bits (75), Expect = 0.20
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM 458
E + + +RE+++Q +LE++E KR+A EE A+ Q+ ERA +
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERARE----------- 85
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+E K +A + E+++Q++ E+ +++++ E EE E E E + E E
Sbjct: 86 ----KEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQE 140
Score = 30.1 bits (67), Expect = 2.3
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
EKR+ E+ E + +Q E+ L E+ R E + Q +R R+K++K
Sbjct: 30 EKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
++K E+ + E+EE+E + + +E E EE
Sbjct: 90 AKRKAEEEEKQEQEEQERIQKQKEEAEARAREE 122
Score = 28.1 bits (62), Expect = 9.6
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
EE D + E +RAA+ R R ++ ++ E++ + K + + + EEE + ++ E E ++
Sbjct: 50 EEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQ 109
Query: 514 EETEENDMHS 523
++ EE + +
Sbjct: 110 KQKEEAEARA 119
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 34.3 bits (79), Expect = 0.21
Identities = 38/233 (16%), Positives = 69/233 (29%), Gaps = 64/233 (27%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKW------REESKRAAQARKRERKKQK---KLEKK 420
+ K + + ++ L +D E + +RK R KL+K
Sbjct: 766 QALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825
Query: 421 EEKRKAMEEEEEVIRVAKN----QQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
++ K + E EEV K Q+ R+ K + + ++R A ++ +
Sbjct: 826 IKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQ 885
Query: 477 KKQ--------------------------------KKLEKKEE--------KRKAMEEE- 495
+ + + LE K E EE
Sbjct: 886 ELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEG 945
Query: 496 -----EEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQ 543
+ E ++ EVE ++ E E D+ G ANS+
Sbjct: 946 PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKK-----STILVREGNKANSE 993
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.1 bits (75), Expect = 0.23
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
R+E A+ + E +++ + E++EEK E++EE+E E E Q +E + + E E
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 32.7 bits (74), Expect = 0.37
Identities = 17/74 (22%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
K ++++ + +EK R+E + + + ER+++K ++++E++ + E EE+ E + +
Sbjct: 117 KKKSLIIRQEQIEKARQEREELEERMEWERREEK-IDEREDQEEQEREREEQTIEEQSDD 175
Query: 507 VEGEMMEEETEEND 520
E E++E++ E +
Sbjct: 176 SEHEIIEQDESETE 189
Score = 29.6 bits (66), Expect = 3.5
Identities = 18/83 (21%), Positives = 44/83 (53%)
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
D++K + R Q K +++++ E+ E +R+ + +E E++E + +E E + +EE++
Sbjct: 114 DIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQS 173
Query: 517 EENDMHSSGGGRGEGEEGDSGID 539
++++ E E D +
Sbjct: 174 DDSEHEIIEQDESETESDDDKTE 196
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 33.8 bits (78), Expect = 0.23
Identities = 14/90 (15%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
E + +KL + + +E R+ + ++ + I +E +E+ +
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLI--- 341
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+ ++ KLE+ ++K + +E+ E+
Sbjct: 342 ---EERKELNSKLEEIQKKLEDLEKRLEKL 368
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 33.7 bits (77), Expect = 0.23
Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 17/145 (11%)
Query: 388 LEELDMEKWREESKRA---------AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
+E +D+E R+E K A + + K+ E KE+ + +E+EE+++ +
Sbjct: 100 VEHIDVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLK--E 157
Query: 439 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE--- 495
++ E + L+ L++E R E + K K+ ++ E + EEE
Sbjct: 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK-KRWDELEPGVELPEEELIS 216
Query: 496 --EEEEEEVEVQEVEGEMMEEETEE 518
+E + +++EG+ +E
Sbjct: 217 DLVKETLNLAPKDIEGQGYIYAEDE 241
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 34.2 bits (78), Expect = 0.23
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 13/136 (9%)
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAM-----EEEEEVIRVAKNQQAERANKNAN 450
RE S + + Q++ +K +++ + E + A R +
Sbjct: 367 IREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
Query: 451 ILLE-ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE-------EEEV 502
+ + ++++ E AA + +K +K+ +E + E E++ +E
Sbjct: 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET 486
Query: 503 EVQEVEGEMMEEETEE 518
+ V + E EE
Sbjct: 487 RKKAVVLARLLELQEE 502
Score = 33.4 bits (76), Expect = 0.43
Identities = 19/140 (13%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVA 437
++ + +L+ ++++ + + +K K + L + +
Sbjct: 160 AKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHE 219
Query: 438 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
+ Q E+ K+ RE ++ Q+ +K++ E++ +K++ +++
Sbjct: 220 RKQVLEKELKHL------------REALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
Query: 498 EEEEVEVQEVEGEMMEEETE 517
EE+ QE E +E
Sbjct: 268 RIEELRAQEAVLEETQERIN 287
Score = 29.9 bits (67), Expect = 4.9
Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 6/164 (3%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
+LL C C + Q E+ K+ L++ KR AQ E + +K+
Sbjct: 204 QLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ----EEQLKKQ 259
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQA-ERANKNANILLEELDMEKWREESKRA-AQARKR 474
K+ + + E + + + Q+ RA K A + + + ++++R + + +
Sbjct: 260 QLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK 319
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R + K L K+ K EE+ ++ + + + E
Sbjct: 320 MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEV 363
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 34.1 bits (78), Expect = 0.24
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 401 KRAAQARKRERKKQKKLEKKEEK------RKAMEEEEEVIRVAKNQQAERANKNANILLE 454
+R A +R ++K EK+++K K ++++EEV+ + + + N+ +
Sbjct: 6 RREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIA 65
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLE 483
+ + +EESK+ + K + + QK+++
Sbjct: 66 DEVKKSTKEESKQLLEVLKTKEEHQKEIQ 94
Score = 29.5 bits (66), Expect = 6.5
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRK--AMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
+R A +R ++K EK+++K + E+ +++EEV V+ + E+ ++EN
Sbjct: 6 RREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQEN 61
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 33.4 bits (76), Expect = 0.24
Identities = 28/141 (19%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME-----EEEEVIRVAKNQQAE 443
EE + E Q R+ K++ + E KE+ + +E ++EE + Q E
Sbjct: 80 EEAEPHAEEEG-----QLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDE 134
Query: 444 RANK---NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE-E 499
+++ E L+ K EE++ + + ++ K+ K++ + E+ +E E
Sbjct: 135 DKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVE 194
Query: 500 EEVEVQEVEGEMMEEETEEND 520
+ + ++ EE+ +E D
Sbjct: 195 KAERTKAETDDVTEEDYDEED 215
Score = 30.7 bits (69), Expect = 1.7
Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME-----EEEEVIRVAKNQQAERAN 446
+ ++E + + + K E +++++ +E EE E + +E+
Sbjct: 115 KIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYK 174
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE--VEV 504
++ E + E +E ++A R + E +E+ +E+ + +EE E
Sbjct: 175 QDMKEKASEQENEDSKEPVEKAE--RTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEP 232
Query: 505 QEVEGE 510
E + E
Sbjct: 233 VEEQQE 238
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 32.4 bits (74), Expect = 0.28
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 395 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
+W++ A+ + E K K E + +++++ + ++ N +L
Sbjct: 31 RWKQRDIHQARVERMEEIKNLKYEL-IMNDHLNKRIDKLLKGLREEELSPETPTYNEMLA 89
Query: 455 EL--DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
EL ++K EE+ ++ E KK + KKE+K + +E E+EE
Sbjct: 90 ELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 32.5 bits (75), Expect = 0.29
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 400 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
K+ +A ++ KK +K + K EK+KA +EE +
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 32.5 bits (75), Expect = 0.29
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
K+ +A ++ KK +K + K EK+KA +EE +
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 31.0 bits (71), Expect = 0.98
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 459 EKWREESKRAAQAR--KRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
E++++ + A K+E K +K EKK EK KA E+++ ++E
Sbjct: 49 EEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93
Score = 29.8 bits (68), Expect = 2.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
K K +KK EK + K + + ++EE +
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 29.0 bits (66), Expect = 4.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 406 ARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
K K +KK EK + K + + ++E +
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 33.4 bits (77), Expect = 0.29
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIR---VAKNQQAERANKNANILLEELDMEK--WR 462
+E+ + + K E E E + Q ++ L+E+++ E+
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
E +R + + ++Q++L K+ K +A ++E
Sbjct: 261 AEQERML---EHKLQEQEELLKEGFKTEAESLQKE 292
Score = 29.2 bits (66), Expect = 6.0
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQA-ERANKNANILLEELD--MEKWREESK 466
E + + + + + RK ++ EE + +++A E A + L + +E R +++
Sbjct: 155 EERDKLEAKYNQVPRKGVKAEEVLQEFLNSKEAVEEAILQTDQALTAKEKAIEAERAKAE 214
Query: 467 RAAQARKRERKKQKKLEKK--------EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
A ++ R+KQK+ E+ +E K + E+ E E E + E E + + E+
Sbjct: 215 AAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQ 274
Query: 519 NDM 521
++
Sbjct: 275 EEL 277
Score = 28.8 bits (65), Expect = 8.6
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
+ L KE KA+E E AK + AE + +L E+ ++E ++ +A++
Sbjct: 196 DQALTAKE---KAIEAER-----AKAEAAEAEQE---LLREK------QKEEEQMMEAQE 238
Query: 474 RERKKQKKL--EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
R ++ K EK E +R+ + E+E E ++QE + E+++E +
Sbjct: 239 RSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQE-QEELLKEGFKTE 285
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 33.1 bits (75), Expect = 0.31
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 475 ERKKQKKLEKKEEKRKAME-----EEEEEEEEVEVQEVEGEMMEEETE 517
+RK+++ LE+KE + + E E+ E++ +E+ E +E T+
Sbjct: 96 KRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 33.6 bits (77), Expect = 0.32
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
+E D E+ +K R++ R K+ K +KK+E +K +E++ I N +
Sbjct: 42 DEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQQNAAIDADMN---NKGKGR 98
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
LL++ ++ A A+ + KK + + + EEEE+EE ++ +E
Sbjct: 99 LKYLLQQTEI--------FAHFAKGDQSASAKKAKGRGRHASKLTEEEEDEEYLKEEE 148
Score = 32.5 bits (74), Expect = 0.91
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASC 546
E+ + + EEE+E E++ V + ++ E EE D ++ ++A
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVP---AEDEDEDEEDDEEAESPAKAEI 57
Query: 547 SSNEVKTAAPNSRRKDKKKKKLDMR 571
S E A +K KK++ +
Sbjct: 58 SKRE--KARLKELKKQKKQEIQKIL 80
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 33.7 bits (77), Expect = 0.32
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+ LLEE K RE K A + + ER++Q + +++ E+ KA E + + + EV++
Sbjct: 248 DFLLEE----KRRELEKLAKE--EAERERQAEEQRRREEEKAAMEADRAQAKAEVEK 298
Score = 31.0 bits (70), Expect = 2.1
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 385 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
+ LLEE K RE K A + +RER+ +++ ++EE++ AME + AK + +R
Sbjct: 248 DFLLEE----KRRELEKLAKEEAERERQAEEQ-RRREEEKAAMEADRA---QAKAEVEKR 299
Query: 445 ANKNANIL 452
K N+L
Sbjct: 300 REKLQNLL 307
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 33.4 bits (77), Expect = 0.34
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 461 WREESKRAAQARKR-ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+ E R Q R E++ + +LEK E+K + +E+E EE E E + GE+
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLYGEL 334
Score = 30.3 bits (69), Expect = 3.3
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 30/149 (20%)
Query: 396 WREESKRAAQARKR-ERKKQKKLEKKEEKRKAMEEEEEVIRVAKN--QQAERANKNANIL 452
+ E R Q R E++ + +LEK E+K + +E+E E A+N E N +
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLYGELLTANLYAI 342
Query: 453 ---LEELDMEKWREESKR----------AAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
++E+++ + + + A+K +K +K E + +EE +EE
Sbjct: 343 KKGMKEVELPNYYTGEEITIPLDPAKSPSENAQKYYKKYKKLKRAVEAVEEQIEETKEEI 402
Query: 500 EEVE--------------VQEVEGEMMEE 514
E +E ++E+ E++E+
Sbjct: 403 EYLESVEAQLENAESLEDLEEIREELIEQ 431
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.3 bits (74), Expect = 0.34
Identities = 14/62 (22%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
KWR++ ++ ++K++++ E++E + + ++EEE+ +E +E + ++ E+ EN
Sbjct: 85 KWRKKVRKLLG---LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELA--KLKREKRREN 139
Query: 520 DM 521
+
Sbjct: 140 ER 141
Score = 28.0 bits (63), Expect = 7.7
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
RK+ RK +K++E+ + E E E E + E+ E +
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVE---------------------ELDEEEQIDELLE 125
Query: 467 RAAQARKRERKKQKKLEKKEEKR 489
+ KRE++++ + ++KE +
Sbjct: 126 KELAKLKREKRRENERKQKEILK 148
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 31.6 bits (72), Expect = 0.35
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 469 AQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
AQ +R K+Q+KLE EEK K E EE + + E E
Sbjct: 3 AQIEERLEKEQRKLEAPEEKSKKNAAREVPLEE-NLNVNRNRLEEGTVE 50
Score = 27.8 bits (62), Expect = 8.0
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 18/98 (18%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
AQ +R K+Q+KLE EEK K E E N N N L E
Sbjct: 3 AQIEERLEKEQRKLEAPEEKSKKNAAREVP-------LEENLNVNRNRLEEGTV------ 49
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKR-----KAMEEEE 496
E++ A +++ EKR KA EE
Sbjct: 50 EARTIDDAIAVLSVNALDVDRHPEKRMKAAYKAFEEAN 87
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 32.6 bits (75), Expect = 0.36
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 407 RKRERKKQK-KLEKKEEKRKAMEEEEE 432
++E+KK K EKK K + + EE
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 32.6 bits (75), Expect = 0.36
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 472 RKRERKKQK-KLEKKEEKRKAMEEEEE 497
++E+KK K EKK K + + EE
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 33.4 bits (77), Expect = 0.36
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 24/99 (24%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
LE+K E+ + E QQ E A ++W K AA K+ +
Sbjct: 239 LEQKAERLRQEAAAYE------KQQKELA-----------KEQEWIRRGKAAASKAKKAK 281
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
+ K+LEK +E EE VE +
Sbjct: 282 SRIKRLEK-------LEARLAEERPVEEGKPLAFRFPPP 313
Score = 31.8 bits (73), Expect = 1.2
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 19/98 (19%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
+ + E R +KQ+K KE++ + R + K+
Sbjct: 239 LEQKAERLRQEA---AAYEKQQKELAKEQEW--------IRRGKAAASKAKKAKS----- 282
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+++ + R A+ R E K ++
Sbjct: 283 ---RIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRL 317
Score = 31.1 bits (71), Expect = 2.0
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ + +Q A + L + ++W K AA K+ + + K+LEK E R A E
Sbjct: 242 KAERLRQEAAAYEKQQKELAKE--QEWIRRGKAAASKAKKAKSRIKRLEK-LEARLAEER 298
Query: 430 EEEVIRVAKNQQAERANKNANILLE 454
E + + + ++LE
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKLVLE 323
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 32.8 bits (75), Expect = 0.38
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK----NQQAERANKNANILLEEL 456
KR +A + E+ K K + E + +++ I K Q AER K + +E
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHS---QEK 66
Query: 457 DMEKWREESK 466
EK + + K
Sbjct: 67 KEEKKKPKKK 76
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 33.3 bits (76), Expect = 0.38
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV 504
++ K +K+ K+ +KRK EE++E ++EVE
Sbjct: 22 RPVKDEAKPRKI-KRVKKRKKREEKDELDDEVEF 54
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.8 bits (75), Expect = 0.42
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 34/142 (23%)
Query: 395 KWREES-KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
K+R+ + RKR+ + +LE+ E K+ +E + I A A+ +
Sbjct: 42 KYRQPGQGTEDELRKRDLRA--ELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDD 99
Query: 454 EELDMEKWR-------------------------------EESKRAAQARKRERKKQKKL 482
+E D K + E + AA R+ E+ K+++
Sbjct: 100 DEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERA 159
Query: 483 EKKEEKRKAMEEEEEEEEEVEV 504
E+KE + + EEE+ E E+
Sbjct: 160 EEKEREEEEKAAEEEKAREEEI 181
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 31.8 bits (73), Expect = 0.43
Identities = 21/124 (16%), Positives = 62/124 (50%), Gaps = 26/124 (20%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEVIRVAKNQQAERANKNA 449
+D++K ES A+K+ K+ KKL+ + ++K K +++EE+ ++ +E
Sbjct: 21 VDVQKVLSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSE------ 74
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
+ ++++ Q+K ++ ++K++A ++E +++++ +Q +
Sbjct: 75 -------------------EARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQPIYD 115
Query: 510 EMME 513
++ +
Sbjct: 116 KIDK 119
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 32.2 bits (74), Expect = 0.43
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
W S+ + + R K +K+LE+ +++ ++ + E ++ + + ER LLEE
Sbjct: 57 WSFPSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEER-----TELLEE 111
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
L Q K +K + +LEK E+ E+ +EE +V +
Sbjct: 112 L------------KQLEKELKKLKAELEKYEKNDPERIEKLKEETKVAKEAAN 152
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 31.8 bits (73), Expect = 0.46
Identities = 22/100 (22%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
QK+LEK+ +KR+A + E+ K L E+L + + A K
Sbjct: 20 QKQLEKEFKKRQA--------------ELEKLEKELQKLKEKLQKDA---ATLSEAAREK 62
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
+E++ QKK+++ + K++ ++++ ++ ++ E+Q++ ++ +
Sbjct: 63 KEKELQKKVQEFQRKQQKLQQDLQKRQQEELQKILDKINK 102
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 33.2 bits (75), Expect = 0.46
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVA 437
E +N +EE E E + + E ++ E EE + +EE +E
Sbjct: 985 ENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEE 1044
Query: 438 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
+ AE N NI E ++E++ EE+ + E ++ E EE + +EE E
Sbjct: 1045 IEENAEE-NVEENI---EENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVE 1100
Query: 498 EEEEVEVQEVEGEMMEEETEEND 520
E E +E E EE EE D
Sbjct: 1101 ENVEENAEENAEENAEENAEEYD 1123
Score = 30.9 bits (69), Expect = 2.5
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
E E K A+A E ++ E EE + EE V +N + E +N +
Sbjct: 933 ENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVE-ENVEENVEENV 991
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
EE E E + + E ++ E EE + +EE EE +E V+E+E E E
Sbjct: 992 EENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIE-ENAE 1050
Query: 514 EETEEN 519
E EEN
Sbjct: 1051 ENVEEN 1056
Score = 30.5 bits (68), Expect = 3.5
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAE-----RANKNANILLE-----EL 456
++ KK KK + K+ E + + KNQ + + ANI + E
Sbjct: 898 GGKKDKKAKKKDAKDLSGNIAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEE 957
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
D E+ EE+ E ++ +E+ E+ +EE EE E ++E E +EE
Sbjct: 958 DAEENVEENVEENVEENVEENVEENVEENVEEN--VEENVEENVEENIEENVEENVEENI 1015
Query: 517 EENDMHSSGGGRGEGEEGDSGIDANSQASCSSN 549
EEN E EE D + N
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Score = 29.4 bits (65), Expect = 6.8
Identities = 34/142 (23%), Positives = 55/142 (38%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVA 437
E +N +EE E E + + E ++ E EE + EE + V
Sbjct: 969 ENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVE 1028
Query: 438 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
+ ++ N+ E + E+ EE+ E ++ E EE + EE
Sbjct: 1029 EVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENV 1088
Query: 498 EEEEVEVQEVEGEMMEEETEEN 519
EE E++E E +EE EEN
Sbjct: 1089 EENVEEIEENVEENVEENAEEN 1110
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 33.2 bits (76), Expect = 0.47
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 24/129 (18%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
Q ++ +++ +EL AR+ ER+ + E E + A+ E ++
Sbjct: 277 QYDQLSRDLGRARDEL------------ETAREEERELDARTEALEREADALRTRLEALQ 324
Query: 436 V-AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
Q AE LE + AA AR+ R+ + +LE EE+R+ EE
Sbjct: 325 GSPAYQDAEE--------LERARADA-EALQAAAADARQAIREAESRLE--EERRRLDEE 373
Query: 495 EEEEEEEVE 503
++
Sbjct: 374 AGRLDDAER 382
Score = 29.8 bits (67), Expect = 5.3
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 14/139 (10%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN------- 446
+ + +A R +++++L+++ + E E R + AERA
Sbjct: 347 AAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTA 406
Query: 447 -----KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
A L E ++ R+++ R R + ++ + + +A
Sbjct: 407 EPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLRRRD--DVADRAEATHAAARAR 464
Query: 502 VEVQEVEGEMMEEETEEND 520
+ + E E E D
Sbjct: 465 RDELDEEAEQAAARAELAD 483
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 31.5 bits (72), Expect = 0.51
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
+A K KKQKK+ K +R+A +E ++ K QQA + L+ E+ ++E
Sbjct: 53 EAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALK-----------LEHERNKQE 101
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKA 491
K+ K+E +K++K + K++K+KA
Sbjct: 102 -KKKRSKEKKEEEKERKRQLKQQKKKA 127
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.9 bits (75), Expect = 0.52
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
R +++ +++LE+K++K + +E+E A ++A+
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK----------------- 44
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+K AQ KK EKK KR +E E+ +
Sbjct: 45 ----AKLQAQQASDGTNVPKKSEKKSRKRDVEDENPEDFID 81
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 33.0 bits (76), Expect = 0.53
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
R R KQ++ E + E EEEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIN 339
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 32.8 bits (75), Expect = 0.53
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
L E L+ +KW ++K Q + ++E +R EEE+EEEEE E E EG
Sbjct: 352 LWETLNKQKW-TKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEE-DEDEGPS 409
Query: 512 MEE-ETEENDMHSSGGGRGEG 531
E + EE + +
Sbjct: 410 KEHSDDEEFEEDDVESKYEDS 430
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 33.0 bits (76), Expect = 0.55
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL---EELDMEKWREE-------SK 466
+ + +E+ + +E+E E + + E A K LL E L++E R E +
Sbjct: 217 IREIKEELEEIEKERESLL---EELKELAKKYLEELLALYEYLEIELERAEALSKFLKTD 273
Query: 467 RAAQA-----RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV 504
+ R +K ++ ++K +E E +EEE EV
Sbjct: 274 KTFAIEGWVPEDRVKKLKELIDKATGGSAYVEFVEPDEEEEEV 316
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 32.7 bits (76), Expect = 0.55
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 25/115 (21%)
Query: 391 LDMEKWRE--ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
LD++ RE E+ + A A++ +L + +E+R+ ++ E E QAER N
Sbjct: 2 LDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELE------ELQAER---N 52
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
A SK QA+++ + + + +E ++ ++ E E +E+E
Sbjct: 53 AL--------------SKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 31.7 bits (72), Expect = 0.55
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 395 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
+W ++ + KKQ+K K+E +++ VI +N K N +
Sbjct: 50 RWNAYVRKQYEEAIELAKKQRKELKREAGSLTLQD---VISFLQNL------KTTNPSDQ 100
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
L E R +++ + +KR + +K+LEK ++ +EE+ +
Sbjct: 101 ALQKENERLKNQNESL-QKRNEELEKELEKLRQRLSTIEEDYQ 142
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 32.4 bits (74), Expect = 0.56
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 389 EELDMEKWREESKRAAQARKRE----RKKQKKLEKK----EEKRKAMEEEEEVIRVAKNQ 440
+ ++ K +E++++A K + ++ Q KLE+ EE+RK ++E+ + +
Sbjct: 52 KAFELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQY 111
Query: 441 QAERANK------------NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
Q E A K N +L + + +E +RA + E +++ E+ E +
Sbjct: 112 QDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELE 171
Query: 489 RKAMEEEEEEE------EEVEVQEVEGEMMEEETEEN 519
R+ + + E E EE E +++ EM++ + E
Sbjct: 172 RENIRAKIEAEARGRAKEERENEDINREMLKLKANEE 208
Score = 29.0 bits (65), Expect = 7.0
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 17/161 (10%)
Query: 344 QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
QE TR EL K +E AK ++A + L+E ++ + +
Sbjct: 60 QEKTR------QAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQD 113
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEE----EEVIRVAKNQQAE----RANKNANILLEE 455
ARKR +K+ ++ ++ E+ M+EE +E +R A ++ + L E
Sbjct: 114 ELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERE 173
Query: 456 LDMEKWREESK-RAAQARKRE--RKKQKKLEKKEEKRKAME 493
K E++ RA + R+ E ++ KL+ EE+ +E
Sbjct: 174 NIRAKIEAEARGRAKEERENEDINREMLKLKANEERETVLE 214
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 32.8 bits (75), Expect = 0.58
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 30/205 (14%)
Query: 389 EELDMEKWREESKRAAQARKRER--------KKQKKLEKKEEKRKAMEEEEEVIRV-AKN 439
+ D E++KR ++ K +R K K K + +EE +++ + K
Sbjct: 6 DSSDESSDEEDTKRVVKSAKDKRFEEMTSTIKTIKNAMKINDWVSLLEEFDKLNKAYQKA 65
Query: 440 QQAERANKNANILLEEL------------DMEKWREESKRAAQARKRERKKQKKLEKKEE 487
++ K ++ L D E ++ SK A+A ++K KK K+ E
Sbjct: 66 KRVSENVKTPRFYIKTLVMLEDFLNELWADKEAKKKMSKNNAKALNTLKQKVKKNNKQFE 125
Query: 488 K-----RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANS 542
R+ E E+EEEEE E + +G E+E E+ G +SG+D
Sbjct: 126 DDITRYREDPESEDEEEEEDEDDDDDGSDDEDEDED----GVGATEEVAASSESGVDRVK 181
Query: 543 QASCSSNEVKTAAPNSRRKDKKKKK 567
+ + + + + K KK
Sbjct: 182 EDDEEDEDADLSKKDVLEEPKMFKK 206
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 32.7 bits (75), Expect = 0.59
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKR 474
+L KK + KA EEEEE+ R K ++ E +K LL L+ E E+ R R++
Sbjct: 174 QLSKKLAELKA-EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK 232
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEE--EEEVEVQEVE 508
E ++K EK ++ + E E+ + E+ +Q +E
Sbjct: 233 EELRKKYEEKLRQELERQAEAHEQKLKNELALQAIE 268
Score = 31.9 bits (73), Expect = 1.0
Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
EE+ +++K +A + + E +++ REE + R + K+ +++ R
Sbjct: 170 EELDQLSKKLAELKAEEEEEL---ERALKEKREELLSKLEEELLARLESKEAALEKQLRL 226
Query: 491 AMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E E+EE + +++ E+ +
Sbjct: 227 EFEREKEELRKKYEEKLRQELERQAEAHEQKLK 259
Score = 29.6 bits (67), Expect = 5.9
Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+++ REE + R + K+ +++ R E E+E +R ++ L
Sbjct: 194 LKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK----------L 243
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+EL E A + + + + +E + E K ++E+ EEE
Sbjct: 244 RQEL------ERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERN 286
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 32.7 bits (74), Expect = 0.61
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 395 KWREESKRAAQARKRERKKQKKL-EKKEEKRKAMEEEEEVIRVAKNQQA--------ERA 445
K+++E+ RA E +++ L E++EE K ME E IR+ + ++
Sbjct: 74 KFKDEADRAKIMAMTEIERESILFEREEEISKLMERRELAIRMEQQHRSSGCTDTRRSTR 133
Query: 446 NKNANILLEE-----LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE---E 497
+ EE L+++K RE +R R E ++ K ++ EE + ++EE
Sbjct: 134 YEPLTSAAEEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSY 193
Query: 498 EEEEVE 503
EE VE
Sbjct: 194 AEEAVE 199
Score = 29.2 bits (65), Expect = 6.6
Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKN 383
+ + A+ + F ++E+++ ++ +++ S ++ + E
Sbjct: 81 RAKIMAMTEIERESILFEREEEISKLMERRELAIRMEQQHRSSGCTDTRRSTRYEPLTSA 140
Query: 384 ANILLEEL-DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE-VIRVAKNQQ 441
A ++L +++K RE +R R E ++ K ++ EE + ++EE +
Sbjct: 141 AEEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVED 200
Query: 442 AERANKNANI 451
R + A +
Sbjct: 201 ISRTDDFAEL 210
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 32.7 bits (75), Expect = 0.61
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 26/220 (11%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRER--------------KKQKKLE 418
++ + L + D E EE ++ + R ER +
Sbjct: 235 HKKEKLKEELKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRA 294
Query: 419 KK-EEKRKAMEE-----EE-----EVIRVAKNQQAERANKNANILLEELDMEKWREESKR 467
K EE RKA+EE EE E V++ + E ++ ++ D +
Sbjct: 295 KYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGG 527
+ K + + + K M+ E ++E E+E E E EE
Sbjct: 355 RKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEE 414
Query: 528 RGEGEEG-DSGIDANSQASCSSNEVKTAAPNSRRKDKKKK 566
+ G N + S ++K N ++ K+
Sbjct: 415 PSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESD 454
Score = 30.8 bits (70), Expect = 2.4
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 26/88 (29%)
Query: 451 ILLEELDMEKWREESKRAAQARK------RERKKQK-----------KLEKKEEKRKAME 493
+ L++L E E R A+ RK RE K K ++ KKE+ ++ ++
Sbjct: 189 LELKKLSPE---EAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELK 245
Query: 494 EEEEEEEEVEVQEVEGEMMEEETEENDM 521
E E E+ + + E EE E+ +
Sbjct: 246 EFE------ELVKADPEAALEELEKLER 267
Score = 29.6 bits (67), Expect = 6.0
Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
++ A+ ++ E + L EL+ EE + + +K + + E +
Sbjct: 379 MQRAEARKKEENDAEIEELRRELE----GEEESDEEENEEPSKKNVGRRKFGPENGEKEA 434
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
E +++ + KN+ E+ + LE+ + K + + + + ++ +K++++ E EE
Sbjct: 435 ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 29.3 bits (66), Expect = 8.3
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 386 ILLEELDMEKWREESKRAAQARK------RERKKQK-----------KLEKKEEKRKAME 428
+ L++L E E R A+ RK RE K K ++ KKE+ ++ ++
Sbjct: 189 LELKKLSPE---EAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEELK 245
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
E EE+++ E K EE K + SK A K R K EE
Sbjct: 246 EFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRAK-----YDEEA 300
Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSS 548
RKA+EE+ + EE+ +++EG+ + EE E+ E+ DS +
Sbjct: 301 RKALEEQLRQGEELR-RKIEGKSVSEEDED-------------EDSDSEEEDEDD----- 341
Query: 549 NEVKTAAPNSRRKDKKKKKL 568
+E N KK KL
Sbjct: 342 DEDDDDGENPWMLRKKLGKL 361
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 31.8 bits (72), Expect = 0.64
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEE 533
+ KKL K +EEE+ + + E E + E ME+ + D E E
Sbjct: 2 PPKGNAKKL--KVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Query: 534 GDSGIDANSQASCSSNEVKTAAPN------SRRKDKK 564
S +S + SS E + P SRR D+
Sbjct: 60 AASSKAPSSSSKSSSQETISIPPTPPARRPSRRWDQT 96
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 32.6 bits (75), Expect = 0.65
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
L+ELD + E +R A ++++ +++LE E++ +EEE + +
Sbjct: 407 LDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQG 466
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
I EE+ E+ + + +RE K E + K +E+ + E +E
Sbjct: 467 IQQI-KEEI------EQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET 519
Query: 508 EGEMMEEETEEND 520
+ ++ EE +
Sbjct: 520 KPRLLREEVTAEE 532
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 31.5 bits (72), Expect = 0.65
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
R++E ++ +K KK + + EE + ++ K++ NK+ + +E K
Sbjct: 61 REKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKD--------REREILKEHK 112
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
+ + +E KK L+K E K+ ++++ +E
Sbjct: 113 KQEKELIKEGKKPYYLKKSEIKKLVLKKKFDE 144
Score = 29.6 bits (67), Expect = 3.3
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 392 DMEKWREESKRAAQARKRERKKQK--KLEKKEEKRKAMEEEEEVIRVAKNQQAERAN--- 446
++E+ + K+ + ++E K+ ++ + + K + E E+++ K Q+ E
Sbjct: 64 EIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGK 123
Query: 447 -----KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
K + I L +K +E K++ Q K KK+KK KE+K
Sbjct: 124 KPYYLKKSEIKKLVL--KKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 31.0 bits (70), Expect = 0.66
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGG 526
E+ A EEEEE +EV+ + E E++ E+ D GG
Sbjct: 41 FEETTPDAAAEEEEEEVVKEVDAENEEVEVV--SLEDADDDPKGG 83
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 31.4 bits (71), Expect = 0.71
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
KLL++ G+DIN + NT L +A + +E+ + L
Sbjct: 75 KLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL 111
Score = 30.2 bits (68), Expect = 1.4
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAAS 120
+L+ AD+ + +TPL +A YE+ L + G N E N + TP +A
Sbjct: 76 LLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE 135
Query: 121 GGYVNIIKLLLTHGAE 136
++ +L GA+
Sbjct: 136 RHDAKMMNILRAKGAQ 151
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 31.6 bits (71), Expect = 0.73
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ L+++G+DINAQ +TAL LA + H++ L
Sbjct: 80 IDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117
Score = 30.4 bits (68), Expect = 1.6
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 58 KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLS 116
+++D L+ AD+ AQ DT L LA +++ E L + G + N + +P
Sbjct: 78 EIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE 137
Query: 117 LAASGGYVNIIKLL 130
LA V ++++L
Sbjct: 138 LAIDNEDVAMMQIL 151
>gnl|CDD|224291 COG1372, COG1372, Intein/homing endonuclease [DNA replication,
recombination, and repair].
Length = 420
Score = 32.3 bits (73), Expect = 0.79
Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 387 LLEELDMEKWREESKRAA-------QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN 439
LL L +E ES++ + + ++ + KA + E + ++ +
Sbjct: 268 LLLRLGIESTITESEKKGKRERVVTISGANLLLELLRIVYAYKLGKAAKIAEALEKLKEK 327
Query: 440 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
++ I + E+ ++ + + RK++ E + K+ + +E +E
Sbjct: 328 KKNINRRILRKIAIREVLLKLEGRLLSKLKLLLEILRKEKLLKEDENLKKLSKGDEYFDE 387
Query: 500 -EEVEVQEVEGEMMEEETEENDM 521
EE+E +G + + E+
Sbjct: 388 IEEIEEIGYDGYVYDLTVEDTHN 410
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 31.4 bits (71), Expect = 0.79
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 447 KNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
KN +L+E D + K +EE+K AA+A + K+ L+ E + ++ + + EV V
Sbjct: 130 KNMGVLVEGYDDVVKAKEEAKAAAKAAALAKAKEASLKSAEAE---LKASKGKSIEVNVI 186
Query: 506 EVEGEMMEEE 515
E E ++E
Sbjct: 187 GEEDEGEKDE 196
Score = 29.9 bits (67), Expect = 2.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 382 KNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE-EVIRVAKN 439
KN +L+E D + K +EE+K AA+A + K+ L+ E + KA + + EV + +
Sbjct: 130 KNMGVLVEGYDDVVKAKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEE 189
Query: 440 QQAERAN 446
+ E+
Sbjct: 190 DEGEKDE 196
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.0 bits (73), Expect = 0.80
Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
+ + E +E + +K+ K + E ++K+K + +
Sbjct: 68 SDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKK--DPTAAKSPKAAAPRPKKKSE 125
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-----EEEEEEVE 503
L R+ S+ + K ++L+++E +RK ++ + E+++E+
Sbjct: 126 RISWAPTLLDSPRRKSSRSSTVQNK--EATHERLKEREIRRKKIQAKARKRKEKKKEKEL 183
Query: 504 VQEVEGEMMEE--ETEENDMHS 523
QE E + E ETE ++ S
Sbjct: 184 TQE---ERLAEAKETERINLKS 202
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 30.7 bits (69), Expect = 0.80
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 444 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ KN ++ E D+E W E + + E+ E A + +E+ +E E
Sbjct: 36 KCEKNYDLGREARDLE-WTEAGRAEKGPAAAATAAAEAAEEAE----AADADEDADEAAE 90
Query: 504 VQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
+ EEET+E ++ E EE D D ++A
Sbjct: 91 ADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 32.2 bits (73), Expect = 0.81
Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM 458
+RA R + + Q + E +++ + + E+ R + AE + + LE
Sbjct: 57 LLQRAELIRSKSKLIQLENELMQKELEHKRAQIELER-KASTLAENYERELDRNLELEVR 115
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
K + E+K + + + EE+ K ++++ + E +++ E ++ E
Sbjct: 116 LK---------ALEELEKKAENEAAEAEEEAKLLKDKLDAES----LKLQNEKEDQLKEA 162
Query: 519 NDMHSSGGGRGE 530
+ S
Sbjct: 163 KESISRIKNDLS 174
Score = 32.2 bits (73), Expect = 0.83
Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 22/161 (13%)
Query: 376 QAERANKNANILLE----------ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 425
Q E +K A I LE E ++++ E R + E+K + + + EE+ K
Sbjct: 79 QKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAK 138
Query: 426 A----MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
++ E ++ K Q + A ++ + + +L E + AQ E K +
Sbjct: 139 LLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDL------SEMQCRAQNADTELKLLES 192
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
EE R+ +EE ++E E E + + + +N +
Sbjct: 193 E--LEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVK 231
Score = 29.9 bits (67), Expect = 4.6
Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 1/146 (0%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
+ Q A+ K LEEL + + + A +K + ++ + K EEE
Sbjct: 179 RAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEE 238
Query: 433 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 492
+ R ++ + ++ K + + EL+ E + +E + K E ++ + +
Sbjct: 239 LKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRL- 297
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEE 518
E E+ E++ E+E E +E E +
Sbjct: 298 ERFEKMREKLADLELEKEKLENELKS 323
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 31.6 bits (72), Expect = 0.83
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQ--KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
E ++E+ +EE K AA + +E K K+ E+ EE+ + +EE +E E E +E
Sbjct: 58 ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESN 117
Query: 512 MEEETEEND 520
+E+E
Sbjct: 118 VEKEITNPS 126
Score = 29.3 bits (66), Expect = 5.1
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEE----EEEEEVEVQEVEGEMMEEETEEND 520
A A ++E KK E E + EE+E E++E+ E E E EEE EE D
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 521 MHSSGGGRGEGEEGDS 536
SS E EE
Sbjct: 100 EESSDENEKETEEKTE 115
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 31.3 bits (71), Expect = 0.83
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
EE K + + +++++K+E +E +++ E E E+ E QE E EEE EE
Sbjct: 40 EEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Score = 29.4 bits (66), Expect = 3.9
Identities = 23/106 (21%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 342 SDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESK 401
+++ YI +E Q+ + +I+ A ++ E+ N + ++ +E + + EE++
Sbjct: 7 VEKKPLLYIVQPKLEEAKANMQK-TFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAE 65
Query: 402 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
+ +A + ER+ + ++KEE + E+EEE V + + K
Sbjct: 66 KEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRK 111
Score = 29.0 bits (65), Expect = 4.8
Identities = 15/90 (16%), Positives = 40/90 (44%)
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
++ ++ + + + K E+++ + + E+E+E + AE+ K EE
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKK 485
+ E + + ++++ K+ LE+K
Sbjct: 93 KEEEAEDVKQQEVFSFKRKKPFKEMNLEEK 122
Score = 28.6 bits (64), Expect = 5.8
Identities = 18/76 (23%), Positives = 43/76 (56%)
Query: 433 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 492
+I+ A ++ E+ N + ++ +E + + EE+++ +A + ER+ + ++KEE +
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 493 EEEEEEEEEVEVQEVE 508
E+EEE E+ + +
Sbjct: 92 EKEEEAEDVKQQEVFS 107
Score = 28.3 bits (63), Expect = 8.6
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
KK + E+++E + +E + + ++AE +E +
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAE-------------------KEKEAGEPE 74
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R+ ++Q+K E +E+ K E E+ +++EV + + E EE
Sbjct: 75 REDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLEE 121
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.1 bits (71), Expect = 0.93
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 426
+ +E++ E AA A K E + + EKKE K+K
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEE--ESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 0.93
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ +E++ E AA A K E + + EKKE K+K
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEE--ESAEGEKKESKKKK 196
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 32.1 bits (73), Expect = 0.93
Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 420 KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
+EE+ +++E +V+R + ++A ++ + ++ R K+ Q R R K
Sbjct: 241 QEEES--IDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKM 298
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEG-EMM--EEETEENDMHSSGGGRGEGEEGDS 536
+ + K ++ E + EE ++ E E + +E+D E + +
Sbjct: 299 RPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDED----DEESKEEV 354
Query: 537 GIDANSQASCSSNEVKTAAPNSRR---KDKKKKKLDMRW 572
+ +V + N RR ++K+KK R+
Sbjct: 355 EKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRKKGFKGRF 393
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 31.3 bits (71), Expect = 0.94
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
M + E ++ +AR++ R + ++ K K M + + + Q+A A +
Sbjct: 103 QMLEENREQQKEKEARRQAR--EAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKER 160
Query: 452 LLEE------LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
L+ E ++ + Q +++E KK+ K K+ EK +
Sbjct: 161 LVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRMAA 210
Score = 29.4 bits (66), Expect = 4.7
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 23/129 (17%)
Query: 367 MVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK-KQKKLEKKEEKRK 425
M+ + Q+ + A + A +M K + A R ++RK +QK KE K +
Sbjct: 104 MLEENREQQKEKEARRQAREAEIAKNMAKM---PQMIADWRAQKRKREQKARAAKERKER 160
Query: 426 AMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
+ E E + + R +E+ Q K E+KK K+ +++
Sbjct: 161 LVAEAREHFGYWVDPRDPR--------FQEM-----------LQQKEKEEKKKVKEAKRR 201
Query: 486 EEKRKAMEE 494
E++ K M
Sbjct: 202 EKEEKRMAA 210
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.9 bits (73), Expect = 0.95
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
E +++++ E + +K KK KK KK + +A+ EE E E E +
Sbjct: 75 EEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Score = 28.8 bits (65), Expect = 9.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 453 LEELDMEKWREESK------RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
LEE++ E+ REE + A + KK + + K+ +K +EE EE +E++
Sbjct: 63 LEEIE-EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEA 121
Query: 507 VEGEM 511
E E
Sbjct: 122 EEPEP 126
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 30.5 bits (69), Expect = 0.99
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
++K+ +E R KR + ++KLE++E++ + +E+ E E + + E+ + E +
Sbjct: 20 LQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQK 79
Query: 518 ENDMHS 523
D
Sbjct: 80 MEDEKL 85
Score = 29.4 bits (66), Expect = 2.4
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM--EEEEEVIRVAKNQQAERANKNAN 450
++K+ +E R KR + ++KLE++E++ + +E+ E+ + +Q E K
Sbjct: 20 LQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLEL-RKLEQ 78
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQ-----KKLEKKEEKRKAMEEEEEEEE 500
+ +E E W E + A + + K +L + EK ++E++ E E
Sbjct: 79 KMEDEKLQETWHEHNLALANFIRTKTKPHLYYRPWRLTPETEKL--LDEQQREAE 131
>gnl|CDD|239940 cd04494, BRCA2DBD_OB2, BRCA2DBD_OB2: A subfamily of OB folds
corresponding to the second OB fold (OB2) of the
800-amino acid C-terminal ssDNA binding domain (DBD) of
BRCA2 (breast cancer susceptibility gene 2) protein,
called BRCA2DBD. BRCA2 participates in homologous
recombination-mediated repair of double-strand DNA
breaks. It stimulates the displacement of Replication
protein A (RPA), the most abundant eukaryotic ssDNA
binding protein. It also facilitates filament formation.
Mutations that map throughout the BRCA2 protein are
associated with breast cancer susceptibility. BRCA2 is a
large nuclear protein and its most conserved region is
the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro,
and is composed of five structural domains, three of
which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and
OB3 are arranged in tandem, and their mode of binding
can be considered qualitatively similar to two OB folds
of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Length = 251
Score = 31.7 bits (72), Expect = 1.0
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV--------IRVAKNQQAERANKN 448
R E + A R +++QKKLE K + E+EE R Q
Sbjct: 42 RAEEREA---RLHAQRQQKKLEALFSKIQEEFEKEEEDNNQRRPRSRTRTRQNVTDLQDG 98
Query: 449 ANI--LLE-----ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
A + LE + EE A ++ + ++K+ +EE RKA+EE +EE
Sbjct: 99 AELYEALEAAADPSFLEAELSEEQLEALSNYQQLQNEKKQARLQEEFRKAVEEALKEE 156
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 30.9 bits (70), Expect = 1.0
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 462 REESKRAAQARKRERKK-----QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
EE + A KR + + L+++E + + +E++EEEE E +E E EEE
Sbjct: 39 TEEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEE 98
Query: 517 EEN 519
EE
Sbjct: 99 EEY 101
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 31.7 bits (72), Expect = 1.1
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
EK+ EK EEEEEE+EE + +E + EEE +E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE 63
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 31.9 bits (72), Expect = 1.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGE 532
K+E K+ E + EK MEE+E E + E+ E ++ S G+GE +
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESD 81
Query: 533 E 533
+
Sbjct: 82 K 82
>gnl|CDD|216868 pfam02084, Bindin, Bindin.
Length = 239
Score = 31.4 bits (71), Expect = 1.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEG 531
E +E+ AM+EEEEEEE+ V ++ N+++++ GG G G
Sbjct: 149 EVREQVLSAMQEEEEEEEQDAANGVRDNVL------NNLNNAPGGGGYG 191
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 30.9 bits (70), Expect = 1.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
K+ KK+K +K++ K +++++E+EEV E EE EEND
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEEND 95
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 31.8 bits (72), Expect = 1.1
Identities = 41/214 (19%), Positives = 88/214 (41%), Gaps = 43/214 (20%)
Query: 124 VNIIKLLLTHG-AEIN---SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN 179
+++IK ++ G +N +TG GI L M ++ L + G ++N Q N
Sbjct: 155 LDLIKYMVDVGIVNLNYVCKKTGY--GILHAYLGNMYVDIDILEWLCNNGVNVNLQ---N 209
Query: 180 RNTALTLACFQGRHEVVSLLLDR----KANVEHRAKTGLTPLM----------EAASGGY 225
+ L + V + ++ + +++ + G++P+M + Y
Sbjct: 210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIY 269
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL-----LLSKGAQVEVKNKK 280
+E LD N P + S +T+A R +++ L G ++ K+
Sbjct: 270 IES----LDGNKVKNIPMILHSY---ITLA------RNIDISVVYSFLQPGVKLHYKDSA 316
Query: 281 GNSPL--WLAANGGHLSVVELLCKHGADIDSQDN 312
G + L ++ + +++LL ++G D++ DN
Sbjct: 317 GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN 350
Score = 30.3 bits (68), Expect = 3.4
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEM 346
++E LC +G +++ Q+N ++ L G+V A ++ + + D +M
Sbjct: 194 ILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCA--SVIKKIIELGGDMDM 242
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 31.9 bits (73), Expect = 1.2
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
K ++ +RE + ++E E + +E+E EE E + ++TE+ D
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281
Score = 31.1 bits (71), Expect = 2.0
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 19/91 (20%)
Query: 484 KKEEKRKAMEEEEEEEEEVEVQ-EVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANS 542
K +E + E EEE + E+E E +G E+E + S E +E
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFS---EEKE--------- 272
Query: 543 QASCSSNEVKTAAPNSRRKDKKKKKLDMRWF 573
+ KT + K+KK ++ WF
Sbjct: 273 ------DPDKTEDLDKLEILKEKKDEELFWF 297
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 31.0 bits (71), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
QA+RA + A K RE + +A +RERK + K +K+ K +A + E +
Sbjct: 111 QAQRAEQQA----------KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Query: 436 VAK 438
V+
Sbjct: 161 VSD 163
Score = 30.3 bits (69), Expect = 2.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 441 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
QA+RA + A K RE + +A +RERK + K +K+ K +A + E +
Sbjct: 111 QAQRAEQQA----------KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Query: 501 EVEVQE 506
++ E
Sbjct: 161 VSDISE 166
Score = 29.9 bits (68), Expect = 2.8
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
EE+K QA++ E++ +K+ E+++ E R K + + K
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRE-----RKPKPKAPRKKRKPRA 151
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 31.2 bits (70), Expect = 1.3
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
++ +K EK + K E E++VIR + + N + D K+ + +A
Sbjct: 55 EQLEKKEKMRMEEKRREPEKQVIRAGVDPKTVVCALFLNKTCAKGDACKF---AHGKEEA 111
Query: 472 RKRERKKQKKLEKKEEKRKAMEEE 495
RK E+ + +E+ + +
Sbjct: 112 RKTEKPDLYSDVRDKEEDVPLGKR 135
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 31.8 bits (72), Expect = 1.3
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGY-VNIIKLLLTHGAEINSRTGSKLGISPL 150
+VV LLL+ + +++N++D+ S + ++KLL++ G EINS K GI+ +
Sbjct: 55 DVVILLLS---SVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINS---IKNGINIV 108
Query: 151 MLAAM--NGHTAAVKLLLDMG 169
A N + KLLLD G
Sbjct: 109 EKYATTSNPNVDVFKLLLDKG 129
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 31.6 bits (72), Expect = 1.3
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 16/107 (14%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
E+ A + + ++ ++++ LE++ ++R+ + E +QA+ + + L ELD
Sbjct: 145 EDLNEADRKKMQQEQQREWLEQQVQERQQAKAAE--------KQADTLH---DQLRVELD 193
Query: 458 -----MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+ EE +RA + + K E++E +R+ +EE+E+
Sbjct: 194 HRAQELASLEEECRRAVEQATADFNKALAEEQRERERREKQEEQEDN 240
Score = 30.4 bits (69), Expect = 2.8
Identities = 30/177 (16%), Positives = 70/177 (39%), Gaps = 40/177 (22%)
Query: 371 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEE 429
V + QQA+ A K A+ L ++L +E RA + E + ++ +E+ + KA+ E
Sbjct: 168 VQERQQAKAAEKQADTLHDQLRVEL----DHRAQELASLEEECRRAVEQATADFNKALAE 223
Query: 430 EEEVIRVAKNQQAERANK-------NANILLEELDM-------------------EKWRE 463
E+ + Q+ + N +++L E D+ +
Sbjct: 224 EQRERERREKQEEQEDNLAEIYNQLTSDLLTENPDVAQSSFGPHRVIPDRWKGMSPEQLA 283
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKR---------KAMEEEEEEEEEVEVQEVEGEM 511
++ + + +E++++++ E+ EK +A E +E + + +
Sbjct: 284 AIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQLD 340
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.9 bits (68), Expect = 1.4
Identities = 19/112 (16%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 398 EESKRA-AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+++ R A+A++ + ++KLE+ ++ R ++ + R + + L
Sbjct: 1 DKAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQGISAAELRNYQA---FISAL 57
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME--EEEEEEEEVEVQE 506
D +++ + QA K+ + +++ ++ ++RK +E E E+++E + +
Sbjct: 58 DEAIAQQQQE-LEQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEEN 108
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 31.6 bits (71), Expect = 1.5
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 389 EELDME----KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
+EL++E K+ E S+ K + KK+K E++EEK+ M ++ K ++ +
Sbjct: 504 KELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKM-----IMMSNKQKKLYK 558
Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
K +N +EE + +K++ KQKKL+ K+
Sbjct: 559 KMKYSN---------AKKEEQAENLKKKKKQIAKQKKLDSKK 591
Score = 30.0 bits (67), Expect = 4.1
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
L EE ++ EE+ + ++ + ++ +++ +E A + E
Sbjct: 462 LMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDD---DDEELQAQKELELEAQGIKYSET 518
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ K K + +K +EEEEE++++
Sbjct: 519 SEADKDVNKSKNKKRKVDEEEEEKKLK 545
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 31.0 bits (70), Expect = 1.5
Identities = 17/81 (20%), Positives = 33/81 (40%)
Query: 443 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
E+ K + L+ K + E + + ++ E+ E+ ++ E+ + E
Sbjct: 7 EKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEE 66
Query: 503 EVQEVEGEMMEEETEENDMHS 523
E+ E E M E+ E M S
Sbjct: 67 EISEKEKVMSEKLKEPAQMSS 87
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 30.3 bits (69), Expect = 1.5
Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 415 KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRA-AQARK 473
+L +K + R + ++ E + N+ + + L+ + + E + + K
Sbjct: 38 PELRQKHKAR--IAKDPEFQYL--NEDIAWLKEERDDKTVSLNEAERKAEREEDEKKRLK 93
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
RE +++K L ++ K +++EE + + E
Sbjct: 94 RENERRKALGEEPLKSLDDLPKDKEEPDAYLDE 126
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 29.2 bits (66), Expect = 1.5
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 400 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA-NILLEELDM 458
S++ RER+ + E +EK K M E + R+A+++ +A K A I E +
Sbjct: 4 SEKLGVLSPRERQALEYNEALKEKYKHMPE---IKRIARHRHVPKAIKKAQKIKREMKEA 60
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
+K +EE +R+ K + K E++K +
Sbjct: 61 KKRKEE-------NRRKHSKPGSVPPKPERKKHVV 88
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.5 bits (71), Expect = 1.6
Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
D+ + ++ + + K +K++ EK +A++ + N +++ +
Sbjct: 272 DIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG- 330
Query: 452 LLEELDME-KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
LE+L E + +EE +A Q+ E KQ ++ + E+ E +E E E +
Sbjct: 331 KLEKLKSEIELKEEEIKALQSNIDELHKQ-----LRKQGISTEQFELMNQEREKLTRELD 385
Query: 511 MMEEETEE 518
+ ++++
Sbjct: 386 KINIQSDK 393
>gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast
Rrp6p, human polymyositis/scleroderma autoantigen
100kDa, and similar proteins. Yeast Rrp6p and its
human homolog, the polymyositis/scleroderma autoantigen
100kDa (PM/Scl-100), are exosome-associated proteins
involved in the degradation and processing of
precursors to stable RNAs. Both proteins contain a
DEDDy-type DnaQ-like 3'-5' exonuclease domain
possessing three conserved sequence motifs termed ExoI,
ExoII and ExoIII, with a specific YX(3)D pattern at
ExoIII. The motifs are clustered around the active site
and contain four conserved acidic residues that serve
as ligands for the two metal ions required for
catalysis. PM/Scl-100, an autoantigen present in the
nucleolar compartment of the cell, reacts with
autoantibodies produced by about 50% of patients with
polymyositis-scleroderma overlap syndrome.
Length = 192
Score = 30.6 bits (70), Expect = 1.7
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 24 EELVELLLSR---GADIEH---RDKKGFTPLILAATAGHDKVVDIL 63
EELVE L + D+EH R GFT L+ +T D +VD L
Sbjct: 15 EELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTL 60
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 31.1 bits (70), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEENDMHSSG 525
EEEEEEEEE++V VE + + S
Sbjct: 235 EEEEEEEEEIDVVTVEKRRSSSNRKASTSESIT 267
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 31.2 bits (71), Expect = 1.8
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 373 KNQQAERANKNANIL--LEELDMEKWREESK--RAAQARKRERKKQKKLEKKEEKRKAME 428
K R L L LD ++ ++ QA++ E KQ K ++K K E
Sbjct: 15 KESLKARGLSVDIDLEKLIALD-DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE 73
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELD 457
++E+ + ++ + L EL
Sbjct: 74 IKKELKEL--KEELTELSAALKALEAELQ 100
Score = 29.3 bits (66), Expect = 7.1
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 438 KNQQAERANKNANIL--LEELDMEKWREESKRAAQARKRERKKQKKL-EKKEEKRKAMEE 494
K R L L LD ++ ++ + + + + K++ + K +K+ +EE
Sbjct: 15 KESLKARGLSVDIDLEKLIALD-DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEE 73
Query: 495 EEEE--EEEVEVQEVEGEMMEEETEENDMHSS 524
++E E + E+ E+ + E E D S
Sbjct: 74 IKKELKELKEELTELSAALKALEAELQDKLLS 105
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 30.8 bits (70), Expect = 1.8
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 405 QARKRERKKQKKLEKKEEKRKAME--EEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
+ RK+Q + E K+ K+K + +E R AK ERA +R
Sbjct: 166 EKLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERA-------------FSYR 212
Query: 463 EESKRAAQARKRERKKQKKLEKKEEK 488
E K A ++R++ +KL K +EK
Sbjct: 213 TERK----AFGKKRRRARKLAKLDEK 234
Score = 28.5 bits (64), Expect = 9.2
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKN------ANILLEELDMEKWREESKRA------A 404
LL +E + A+ QQ E NK + L+E +RA
Sbjct: 159 MLLGISEE---KLNSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTER 215
Query: 405 QARKRERKKQKKLEKKEEK 423
+A ++R++ +KL K +EK
Sbjct: 216 KAFGKKRRRARKLAKLDEK 234
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 31.1 bits (70), Expect = 1.8
Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 4/112 (3%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
Q + + + LD++ S + Q + + + + E+ +
Sbjct: 172 ASQKQLQASATQLKSQVLDLKL---RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQ 228
Query: 434 IRVAKNQQAERA-NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
A Q+ + K I + + + +R A+ R ++ +LE
Sbjct: 229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
Score = 31.1 bits (70), Expect = 1.9
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
+L + + R+AQ + + L + +A EE A Q A+ +
Sbjct: 182 TQLKSQV-LDLKLRSAQIEQEAQN----LATRANAAQARTEELARRAAAAQQTAQAIQQR 236
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
+ +K ++ + RA Q R+RER +L++ E + +E+E + E
Sbjct: 237 DAQI-----SQKAQQIAARAEQIRERER----QLQRLETAQARLEQEVAQLE 279
Score = 30.4 bits (68), Expect = 2.8
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
K Q + +R A+ +Q + + E ++RAA A++ + Q++ +
Sbjct: 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQART----EELARRAAAAQQTAQAIQQRDAQI 240
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
+K + + E IR + +Q +R L +E+ + + QA R R++
Sbjct: 241 SQKAQQIAARAEQIR-ERERQLQRLETAQARLEQEV------AQLEAYYQAYVRLRQQA 292
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.1 bits (71), Expect = 1.8
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
E+ K +EEE + + + + K +L EK RE+ ++ + +++ ++ ++
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEK-REQLEKLLETKEKLSEELEE 392
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEV 507
LE++ ++ K E E ++ V +
Sbjct: 393 LEEELKELKEELESLYSEGKISVNKT 418
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 29.9 bits (68), Expect = 1.8
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 408 KRERKKQKKLEKKEEKRK----AMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
+R+ K +++ EE+ K + E E+ + A+ +A NA ++L +E
Sbjct: 30 ERKEKIANNIKEAEERLKQAAALLAEAEQQLAQAR-AEASEIINNAKKEAQKL-----KE 83
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
E AQ + + E ++EK +A+ E ++ + VQ E
Sbjct: 84 EILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIAE 128
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.3 bits (71), Expect = 1.9
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 358 LLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 417
+ + S IR+ + + N + N L E +K ++ +K ++ KK K
Sbjct: 22 FIKNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNK---TDDLKDSKKTKLK 78
Query: 418 EKKEEKRK-AMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
+KK+ K+K ++++ + +KN + A A L+ + + + + K ++
Sbjct: 79 QKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKK 138
Query: 477 KKQKKLEKKEEKRKAMEEEEE 497
KK+ K E + + +
Sbjct: 139 KKKVLSSKDELIKYDNNKPKS 159
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 30.9 bits (70), Expect = 1.9
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
+ +I KN++A+R ++ K A + RKR RK + + KE
Sbjct: 243 QRMIERCKNRKAKRDPNGT-----------FQVARKAAMKRRKRNRKLRARN-AKELAAM 290
Query: 491 AMEEEEEEEEEVEVQEVEG 509
ME + E + + G
Sbjct: 291 RMEANQIRRNEPRARMLMG 309
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 31.1 bits (70), Expect = 1.9
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 373 KNQQAERANKNANILLEELDM-------EKWREESKRAAQARKRERKKQKKLEKKEEKRK 425
K Q A+ + + LEE D ++WREE K R + KK K +
Sbjct: 418 KAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELK-----RMKMMKKFGKEIGELPDGY 472
Query: 426 AMEEEEE 432
+ E +EE
Sbjct: 473 SEEVDEE 479
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 28.3 bits (64), Expect = 1.9
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R E R A R RERKK + E + + + E E ++E+E E E ++ E EE
Sbjct: 9 RRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.2 bits (71), Expect = 2.0
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 8/169 (4%)
Query: 345 EMTRYIQTVNDKELLDKCQECSMVIR-VAKNQQAERANKNANILLEELDMEKWREESKRA 403
+ +D+E K ++ S+ KN ++ + N ++L E + + +
Sbjct: 1218 SNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKR 1277
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
A + K E + +V K + A E+ K ++
Sbjct: 1278 VSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARK-KK 1336
Query: 464 ESKRAAQARKRE------RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
R QA + R ++KK + E E ++ E+E+ E E
Sbjct: 1337 SKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385
Score = 30.8 bits (70), Expect = 2.5
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 11/165 (6%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
A+ K+E++ +K L+ K +E+ ++ + Q+ E+ ++ R
Sbjct: 1109 AELEKKEKELEK-LKNTTPKDMWLEDLDKFEEALEEQEEVE---------EKEIAKEQRL 1158
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE-EEEVEVQEVEGEMMEEETEENDMH 522
+SK +A K + K KK EKK++K A + ++ + + + + ++ +N
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218
Query: 523 SSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+S G E +E S ++ ++ +S D+
Sbjct: 1219 NSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSD 1263
Score = 30.4 bits (69), Expect = 3.3
Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 17/159 (10%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERA-NKNANILLEELDMEKWREESKRAAQARKRE 475
EK E+ +E++E+ + KN + ++ + E L+ ++ EE + A + R +
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKS 1160
Query: 476 RKK-------QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGR 528
+ K + KL+KKE+K+K ++ ++ V + E
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE---------KRKLDD 1211
Query: 529 GEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+ + ++ + + R K KK
Sbjct: 1212 KPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNS 1250
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 31.2 bits (70), Expect = 2.0
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGID 539
KKL KK +K+ A EEE+ ++ E E D G + +E D +
Sbjct: 486 KKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKE 545
Query: 540 ANSQASCSSNEVKTAAPNSRRKDKKKK 566
EV P ++ K K
Sbjct: 546 GGKPGETKEGEV-GKKPGPAKEHKPSK 571
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 31.2 bits (70), Expect = 2.1
Identities = 15/102 (14%), Positives = 43/102 (42%)
Query: 444 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
R NK +L ++ + S R Q R+ R+ +++L +++ + ++++ + +
Sbjct: 270 RENKRKQMLPQQQQQSFDQLVSPRKEQKREERRQLKQQLRDMQKQLRQLQQKYVQIYDST 329
Query: 504 VQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQAS 545
+ ++ E+ ++ S + D+G D +
Sbjct: 330 DDSTDDDIHEDIGNLSEDSPSRSNSLDASAPDNGGDRPRSDN 371
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.8 bits (69), Expect = 2.2
Identities = 20/88 (22%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 443 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE-------E 495
++++ ++ LE L++ + E +R Q + E + +++E+ EE EE E
Sbjct: 80 DKSDNENDVELEGLNIIV-KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSE 138
Query: 496 EEEEEEVEVQ----EVEGEMMEEETEEN 519
+++E+E + + E+ GE + EE +++
Sbjct: 139 KDDEKESDAEGDENELAGEYIIEEVDDD 166
Score = 30.4 bits (68), Expect = 2.6
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 481 KLEKKEEKRKAMEEEEEEEEEVEVQEVEG-EMMEEETEENDMHSSGGGRGEGEEGDS 536
+ K EE+R +EEEE+E+ E++EVE E++EEE ++++ + EGD
Sbjct: 95 IIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 31.1 bits (70), Expect = 2.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHD-KVVDILLNHKADM 70
+T L A + LV LLL G+D+ R G+T + +A + +++ +LL HK +
Sbjct: 453 ETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTL 512
Query: 71 E 71
+
Sbjct: 513 D 513
Score = 29.2 bits (65), Expect = 7.7
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG-SKLGISPL 150
EVV+LLL G N H+N TPL + +V + K + E + + I
Sbjct: 49 EVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY 108
Query: 151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
M + N +K+L++ G D++ + E +R+
Sbjct: 109 M-KSKNVDVDLIKVLVEHGFDLSVKCENHRS 138
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 28.3 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
EK R + + A+K RKK++KL K ++ E E +E+
Sbjct: 10 EKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIR 54
Score = 26.4 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
R E RA +A+KR KK + +K++ K E+ +E E E+
Sbjct: 8 RNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIR 54
>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting
protein 1 (NUFIP1). Proteins in this family have been
implicated in the assembly of the large subunit of the
ribosome and in telomere maintenance. Some proteins in
this family contain a CCCH zinc finger. This family
contains a protein called human fragile X mental
retardation-interacting protein 1, which is known to
bind RNA and is phosphorylated upon DNA damage.
Length = 57
Score = 27.7 bits (62), Expect = 2.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 446 NKNANILLE-ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
+I L+ ++ KW EE RKK + EK+K EEE + E+
Sbjct: 11 IPGTSIKLQTPEEIAKWIEE-----------RKKNYPTKANIEKKKKAEEERIKRGEL 57
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 30.7 bits (69), Expect = 2.3
Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 31/207 (14%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQK--------KLEKKEEKRKAMEEEEEVIRVAKN 439
++++ E+ EE + QA RE+K K KL++ E +A E EEE ++
Sbjct: 161 EKKMEEEEAGEEKESVEQA-TREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDED 219
Query: 440 QQAERANKNANILLEELDMEKWREESKRAAQA-------RKRERKKQKKLEKKEE----- 487
+ ++ ++ D +E +E+ K+K E
Sbjct: 220 DFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDE 279
Query: 488 -----KRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANS 542
+K + + EEE+E + ++ + + EE E E G+D S
Sbjct: 280 PDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVK-----LDEPVLEGVDLES 334
Query: 543 QASCSSNEVKTAAPNSRRKDKKKKKLD 569
SS E + A + + +K+ L
Sbjct: 335 PKELSSFEKRQAKLKQQIEQLEKENLA 361
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 30.4 bits (69), Expect = 2.3
Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 378 ERANKNANILLEELDMEKWREE--SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
E K + E ++++ R+E + + A KR+ K E +E+ ++ EE +E+
Sbjct: 10 ELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINE 69
Query: 436 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
+ + +R NA + + + +E+ + + ++++E+ E+K++
Sbjct: 70 EVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLT 129
Query: 496 EEEEEEVE 503
EEE E+
Sbjct: 130 PEEERELV 137
Score = 28.5 bits (64), Expect = 8.8
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 25/151 (16%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEE-----------KRKAMEEEEEVIRVA 437
L E+ RE ++ + RK +K LE+ E+ K+KA E E++ +A
Sbjct: 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA 185
Query: 438 KN------------QQAERANKNANILLEELD--MEKWREESKRAAQARKRERKKQKKLE 483
++A+ K A+ L EE +K E + + R+ +KK++
Sbjct: 186 NEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
K KA + E+ EE E E E +
Sbjct: 246 ALRAKEKAAKRREKREELKERAEEIYEKFKR 276
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 30.9 bits (71), Expect = 2.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV-EVQEVE 508
A + ++++K E E+ + E E EEE +V V+
Sbjct: 323 AYRLRKREKKAAELAAEEAEEEEAAEPEEESWDDVLPVD 361
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 29.2 bits (66), Expect = 2.5
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+R R ++KKL+++E KR+ E +E E E+
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
>gnl|CDD|212164 cd11650, AT4G37440_like, Uncharacterized protein domain conserved
in plants. This domain contains an extensive protein
sequence fragment that appears conserved in a number of
plant proteins, including the gene product of
Arabidopsis thaliana locus AT4G37440, which has been
identified in transcriptional profiling as expressed at
different levels in white cabbage cultivars.
Length = 253
Score = 30.5 bits (69), Expect = 2.5
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 497 EEEEEVEVQEVEGE-----MMEEETEEND---MHSSGGGRGEGEEGDSG----IDANSQA 544
E+VEV ++ GE E E+ D SS G E DSG + +S
Sbjct: 1 SGAEDVEV-DIVGETTVRDNASEGDEDGDATESSSSFGDSDSASEDDSGGDADTEVDSPF 59
Query: 545 SCSSNEVKTAAPNSRRKDKKKKKLDMRW 572
T + +KKKL W
Sbjct: 60 FGGGGLGDTFDSGPLK--VRKKKLTAHW 85
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
LE+L+ E+ + + + R K + + + ++K K M++EE+EE
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 29.9 bits (68), Expect = 2.5
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 462 REESKRAAQARKRERKKQKK-LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
E+ K + ++ +++K+ LEK+ + +A E E+ EE E Q E +E
Sbjct: 118 AEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 30.6 bits (68), Expect = 2.5
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 398 EESKRAAQARKRERKKQKKLEKKE---EKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
+ K A AR R K +LE++E E+ K E+E + +AE+ + +
Sbjct: 132 QAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQ 191
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ + EK + + A + E++KQK +K++ K ++ +E E+
Sbjct: 192 KTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQ 238
Score = 29.1 bits (64), Expect = 8.3
Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 360 DKCQECSMVIRVAKNQQAERANKNANILLEE---LDMEKWREESKRAAQARKRERKKQKK 416
DK E + + A+N + +RANK+ L +E + EK + E + A + + +Q+K
Sbjct: 125 DKKIELAQAKKEAENAR-DRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEK 183
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
+ ++EK+K +E+++ +A E + E+ D+ K +++ + A+ +E
Sbjct: 184 QKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQEN 243
Query: 477 KKQKKLEK 484
Q ++K
Sbjct: 244 HNQFFIKK 251
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 30.4 bits (68), Expect = 2.6
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 15/171 (8%)
Query: 413 KQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK------WREESK 466
+ ++ KK K + E E++V + + + +A + +L +E ++ + W +
Sbjct: 189 RARRFRKKSSKIEIEEVEKKVDDLLE--KDMKAESVSVVLKDEKELARQERVSSWENFKE 246
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEE-------EEEEEEVEVQEVEGEMMEEETEEN 519
+ R K++K +EE + M EE E E +EV + E + E E E
Sbjct: 247 EPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEA 306
Query: 520 DMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDM 570
R + + D ++ + E+ N K ++K+ M
Sbjct: 307 HKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQM 357
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 2.7
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 340 FPSDQEMTRYIQTVNDKELLDKCQECSMVIR-VAKNQQAERANKNANILLEELDMEKWRE 398
P +E + D EL D +E + ++K + N L ELD K E
Sbjct: 20 HPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEE 79
Query: 399 ESK--RAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
E + K + +L + +E+++ +E EE
Sbjct: 80 ERLLDELEELEKEDDDLDGELVELQEEKEQLENEEL 115
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 30.2 bits (69), Expect = 2.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 444 RANKNANILLEEL-DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+A A L L D + EE K A+ + +++ E++EE EEEEE EE
Sbjct: 266 KAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEE-----EEEEEPSEE 319
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.8 bits (70), Expect = 2.7
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 381 NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ 440
N+N N +K ++ K + +++ + + ++E++ E E N
Sbjct: 1495 NENVN--------KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNL 1546
Query: 441 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
++ +N+ NI E+ ES +KR+ KKQ K + E
Sbjct: 1547 ESVLSNQEKNI-------EEDYAESDI----KKRKNKKQYKSNTEAE 1582
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 30.5 bits (70), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 412 KKQKKLE---KKEEKR-KAMEEEEEVIRV-AKNQQA 442
+K K+L K+E R KA++ E E +R K +QA
Sbjct: 251 QKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQA 286
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 29.5 bits (66), Expect = 2.8
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
E +ES + + + ++ E+++ K + MEEE EV+R Q R
Sbjct: 22 GKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMR-----QGIRDKYGI-- 74
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
K +EE + QA E + + +KK + A E EE+EEE E ++
Sbjct: 75 --------KKKEEDEEEPQAAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEKSGFPTQL 126
Query: 512 MEEETEENDM 521
+ + +++
Sbjct: 127 KDLPGKVSEL 136
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 29.6 bits (67), Expect = 2.8
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 401 KRAAQAR-----KRERKKQKKL-EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
K ++R KR + Q+KL E KE+K A+++ EE A+ E A K A IL
Sbjct: 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAEL-IVETAKKEAYIL-- 104
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+K +++K + + ++ + E ++ +R+ +EE
Sbjct: 105 ---TQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEE 141
>gnl|CDD|221431 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This
protein is found in bacteria. Proteins in this family
are about 330 amino acids in length. The operon from
which this protein is derived confers immunity for the
host species to a broad range of antibacterial
compounds, unlike the specific immunity proteins that
are linked to and co-regulated with their
antibiotic-synthesis proteins.
Length = 318
Score = 30.4 bits (69), Expect = 2.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
E KR AQA K E+R+AM E+E + +VQE+ +++E E E
Sbjct: 236 EADKRIAQA-------------KAEERRAMAVAREQEMKAKVQEMRAKVVEAEAE 277
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 28.4 bits (64), Expect = 3.0
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
+EEL+ REE++R + ++RE +K+K+ EE+RK +EE
Sbjct: 49 MEELEKA--REETER--ERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 29.5 bits (67), Expect = 3.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 15/60 (25%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
K ++AE A + + + R+ +K+AA+A +RER + R AM +E
Sbjct: 8 KRREAEAARRRPLVPED-------RKAAKKAARAARRER--------RARARAAMMAGDE 52
Score = 29.5 bits (67), Expect = 3.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 15/60 (25%)
Query: 438 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
K ++AE A + + + R+ +K+AA+A +RER + R AM +E
Sbjct: 8 KRREAEAARRRPLVPED-------RKAAKKAARAARRER--------RARARAAMMAGDE 52
Score = 29.1 bits (66), Expect = 4.2
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
K R KR R R + ++K K+ A E + G+
Sbjct: 2 KGRPTPKRREAEAARRRPLVPE-DRKAAKKAARAARRERRARARAAMMAGD 51
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 29.8 bits (67), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 407 RKRERKKQK-KLEKKEEKRKAMEEEE 431
R++E+KK + K EKK K + +E E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAE 118
Score = 29.8 bits (67), Expect = 3.3
Identities = 11/26 (42%), Positives = 22/26 (84%)
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEE 501
R+K+KK + +E++KA++EE+++E E
Sbjct: 93 REKEKKKSRTKEEKKALKEEKDKEAE 118
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 28.5 bits (64), Expect = 3.0
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVA--------KNQQAERANKNANILLEELDM 458
R R+ +++ E ++ + +EE++ R + + A R + + + +E
Sbjct: 10 RSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDDDMEAGGA 69
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
+ EE + A AR E +++++LEK+EE+ K
Sbjct: 70 DIQEEERRSARLAR-LEDREEERLEKEEEREK 100
Score = 27.7 bits (62), Expect = 5.8
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRK 425
+ EE + A AR E +++++LEK+EE+ K
Sbjct: 69 ADIQEEERRSARLAR-LEDREEERLEKEEEREK 100
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 29.9 bits (67), Expect = 3.1
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E A Q +KK+KK K+E K + E+ ++ E + E+ D
Sbjct: 81 EKDLALQPPPGGKKKEKK---KKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPP 137
Query: 524 SGGGRGEGEEGDS 536
GG GE E G S
Sbjct: 138 PPGGEGEVEGGPS 150
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 29.7 bits (67), Expect = 3.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
+KE K E EE + E K ++ EE++ E+ E+S+ + + + E K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 478 KQKKLEKKEEKRKAMEEEEE 497
+ + KEE +K E E
Sbjct: 61 DENN-KLKEENKKLENELEA 79
Score = 29.3 bits (66), Expect = 4.6
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEE---EEEVEVQEVEGEMMEEETEENDMHSSGG 526
++E K K +E+ K E +EE+ EE++E +E+E E + E++EE++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 30.3 bits (69), Expect = 3.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 470 QARK--RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
R+ ER K K+ E EEEEE E + +E ++ ET
Sbjct: 254 ARRRLAYERAK----AKRAEILAQRAEEEEESSEGAAETIEEPELDLET 298
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 30.0 bits (68), Expect = 3.2
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 407 RKRERKKQKKLEKKEEKRK---AMEEEEEVIRVAKNQQ--AERANKNANI---------L 452
R + LE +E K+K A+E E A K + L
Sbjct: 24 ELRLDLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQL 83
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
EE++ ++ R E + A A++R + ++ + +E+ ++E +
Sbjct: 84 KEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTR 134
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels
in the brain in humans. The human protein has six
associated ankyrin repeat domains pfam00023 towards the
C-terminus which act as protein-protein interaction
domains.
Length = 193
Score = 29.8 bits (67), Expect = 3.2
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 388 LEELD--MEKWREESKRAAQ----ARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQ 441
+ ELD M K +E +R A KR+RK +LE EEKRK + ++ +
Sbjct: 84 MSELDKVMAKQKETQRRMLAQLLAAEKRQRKTVLELE--EEKRKHIRYMKKSDDFTNLLE 141
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
ER L + L+ EK +Q K+E++ +K L EE+ ++
Sbjct: 142 QER-----ERLKKLLEQEK--------SQQAKKEQEHRKLLATLEEELGKLK 180
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 407 RKRERKKQK-KLEKKEEKRKAMEEEEE 432
++E+KK K EKK K + + EE
Sbjct: 97 AEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 29.9 bits (68), Expect = 3.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 472 RKRERKKQK-KLEKKEEKRKAMEEEEE 497
++E+KK K EKK K + + EE
Sbjct: 97 AEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.7 bits (65), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 388 LEELD---MEKWREESKRAAQARKRERKKQKKLEKKEEKRK 425
LE+ D + ++ E K +A +E KK K EK + +
Sbjct: 83 LEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.7 bits (65), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 453 LEELD---MEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
LE+ D + ++ E K +A +E KK K EK + +
Sbjct: 83 LEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.7 bits (67), Expect = 3.3
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 425 KAMEEEEEVIRVAKNQQAERANKNAN-ILLEELDMEKWREESKRAAQARKRERKKQKKLE 483
K +EE IR E +K + I E++++ ++ K+ ++ +K
Sbjct: 15 KTLEE----IRAHVRSTTESVDKVRDDIFPEDIEIPSPKQPKKKRPTTPRKPATTKKS-- 68
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
KK++K K EEE++ E + + E + E D S
Sbjct: 69 KKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.2 bits (68), Expect = 3.3
Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 362 CQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 421
C EC +R N L E+ +EK + KR K K+++
Sbjct: 46 CPECDTPLR---------KNNFRVQLFEDPTVEKEVDIRKRVL---KIYNKREEDFPSLR 93
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
E +EE E+++ N N ++ + +E +++E+K Q + ++K +
Sbjct: 94 EYNDYLEEVEDIVYNLTN--------NIDLENTKKKIETYQKENKDVIQ---KNKEKSTR 142
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGE--MMEEETEE 518
+++ E+ E+EEEE+ + +Q+ E E M + + ++
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 30.1 bits (68), Expect = 3.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 393 MEKWREESKRAAQARKRERKKQK-KLEKKEEKRKAM--EEEEEVIRVAKNQQAERANKNA 449
+ E++ + +R++++ LE +EE R + E+EE+ +R + Q+ R NA
Sbjct: 97 ETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLRERQRQRMARLQANA 156
Query: 450 NIL 452
Sbjct: 157 AAY 159
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 30.0 bits (68), Expect = 3.5
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 349 YIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 408
Y Q KE +K ++ + + E+ +++ ++ EE KR +K
Sbjct: 177 YAQLTAYKEACEKNLTVEIIGDEEEAKAFEQQKESSEQSQDDDSDSDEEEEQKRQ---KK 233
Query: 409 RERKKQKKLEKKEEKRKAM 427
R Q+KL+ K K +
Sbjct: 234 RRSTDQEKLDDKRLKNSKL 252
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 29.6 bits (67), Expect = 3.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
+ +K++KK KEEK+ E+E+ EEE ++G
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCILDG 130
>gnl|CDD|218270 pfam04795, PAPA-1, PAPA-1-like conserved region. Family of
proteins with a conserved region found in PAPA-1, a
PAP-1 binding protein.
Length = 89
Score = 28.1 bits (63), Expect = 3.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
KRA AR+R+ + +K+ E EE+ E I +QA R + D K
Sbjct: 5 KRAEAARRRKNQSEKRAE---------EEKMETINKLLKKQARRKKRE--------DKIK 47
Query: 461 WREESKRAAQARKRER 476
+E K +A + E+
Sbjct: 48 KGDEKKAQEKAARAEK 63
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 30.0 bits (68), Expect = 3.8
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN 439
D+ K REE ++ +A KK+ K E++ + EE E+I + KN
Sbjct: 388 DVYKEREEKEKEKKA-----KKEGKEERRIHFQNKSIEEAEII-IGKN 429
Score = 30.0 bits (68), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
E++K+ K E KEE+R + + EE E+
Sbjct: 397 EKEKKAKKEGKEERRIHFQNKSIEEAEI 424
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 30.1 bits (68), Expect = 3.8
Identities = 13/72 (18%), Positives = 34/72 (47%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+E +R++++ L+++ E+R E+ E EE+ ++E+ +E +E+++
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Query: 522 HSSGGGRGEGEE 533
+ E
Sbjct: 438 EEAQPEEEEEAR 449
Score = 29.0 bits (65), Expect = 7.3
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ EE +A +R +Q + +++ + + + E+E E E + E + EEE
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.3 bits (66), Expect = 3.9
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME-----EEEEEEEEVEVQEVEGEMM 512
+++ EE + + + + K ++ +E ++ EEEE++E + + +
Sbjct: 84 LDEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDED 143
Query: 513 EEETEENDMHSSGGGRGEGEEGD 535
E++ E ++ E E+ D
Sbjct: 144 EDDDEIVEILIEDDEVDEDEDDD 166
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 29.8 bits (68), Expect = 3.9
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 366 SMVIRVAKNQQAERANKNANILLEEL-DMEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
++++ +A+ +++++ L E+ +M++ + + + K K QKK EK+E K
Sbjct: 24 ALIVSLAQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKA 83
Query: 425 KAMEEE 430
+ +
Sbjct: 84 AKAKSK 89
Score = 29.8 bits (68), Expect = 3.9
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 459 EKWREESKRAAQAR--KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
E+++E + A K+E K K +KK+EK++A + + + + V + +G++ E
Sbjct: 47 EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLFVLDFKGDIDASEV 106
Query: 517 E 517
E
Sbjct: 107 E 107
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.0 bits (68), Expect = 4.0
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
IR NQQ + + + + +++ E +R RK+ K E EE +
Sbjct: 176 IREL-NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKA 234
Query: 494 EEEEEEEEVEVQEVEGE 510
E EE +E+ ++ E
Sbjct: 235 EIEELTDELLNLVMDIE 251
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.9 bits (68), Expect = 4.1
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 2/120 (1%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
+ +++K+ K E+ R +A +EL+ +
Sbjct: 56 TPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALPEWKKELEKPSEPK 115
Query: 464 ESKRAAQARKRERKKQKKLEKKEEK--RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E + A A + +K+ + E K + +E++ +VE E + + + + +
Sbjct: 116 EEEPKAAAESKVVQKELDELRDELKELKNLLEDQLSGLRQVERIPPEFAELYKRLKRSGL 175
>gnl|CDD|225224 COG2348, COG2348, Peptidoglycan interpeptide bridge formation
enzyme [Cell wall/membrane/envelope biogenesis].
Length = 418
Score = 30.1 bits (68), Expect = 4.1
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 27/145 (18%)
Query: 380 ANKNANILLEELDMEKWREESKRAAQA------RKRERKKQ-KKLEKKEEKRKAM----E 428
+K + LL+ +K R K+A + RE +L KK +RK
Sbjct: 163 KDKTEDQLLKSFS-KKTRRNIKKAEKKGVKVRRLSREELDLFSELMKKTSERKGFTDRSL 221
Query: 429 EEEEVIRVAKNQQAE------RANKNANILLEEL-----DMEKWREESKRAAQARKRERK 477
E +AE ++ L +EL ++E+ +E K + K
Sbjct: 222 SYYENFYDIYKDKAELPLAYLDLDEYLKKLNQELAKLAAEIERVQEALKE----SPKSEK 277
Query: 478 KQKKLEKKEEKRKAMEEEEEEEEEV 502
Q KL + + + +A EE EEV
Sbjct: 278 AQNKLNRLQMQLEAFEERIALIEEV 302
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 28.3 bits (63), Expect = 4.1
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI-RVAKNQQAER 444
+ K ++ K A K ++K KK +KKEE R+A+ +EE++ ++ K ER
Sbjct: 7 LSKEKKAEKAKAGTAKDKKKWSKK-KKKEEARRAVTVDEELLDKIRKEVPRER 58
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 30.0 bits (67), Expect = 4.1
Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
++ Q + A LE+ EK R + Q + ER +Q++ E +++ + ++EE +
Sbjct: 423 RSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQ 482
Query: 433 VIRVA---KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
+++ + Q E + + L + K R + +RA ++ R+K +KLEK+ ++
Sbjct: 483 NLQLKLSERELQLELLKEEVSKLAS--NQLKQRSDLERAHIELEKIREKHEKLEKELKRL 540
Query: 490 KAMEEEEEEEEEVE 503
+A E + V+
Sbjct: 541 RANPESADRGSAVD 554
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 30.4 bits (68), Expect = 4.1
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGE 532
KR R + E + + ++++E+E+ + + E + EEE EE ++ E E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEE-EIKGFDDEDEEDE 191
Query: 533 EGDSGIDANSQ 543
G+ S+
Sbjct: 192 GGEDFTYEKSE 202
Score = 30.0 bits (67), Expect = 5.0
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
R++ + L +++ + ++++E+ + + + E EEE EE + E EE +
Sbjct: 134 RRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDD--EDEEDE 191
Query: 536 SGIDANSQAS 545
G D + S
Sbjct: 192 GGEDFTYEKS 201
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 30.0 bits (67), Expect = 4.1
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
R ++++ K I L+ EE+++ A+A + E +K K E+ E+ + A+E
Sbjct: 319 RTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLK--EEAEQTKAALET 376
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK-------RERKKQKKL 482
E + A ++AE A + L E+ + EES +A RK E +K
Sbjct: 377 AELRLEAAL-KEAEAAKAAEALALAEIKALQESEESAKADSPRKITLSLEEYEELSKKAE 435
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
E +E K + + EE + E E EE +
Sbjct: 436 EAEELAEKKVAAALAQVEEAKESENESLKKLEEASK 471
Score = 28.8 bits (64), Expect = 9.2
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK--------KEEKRKA 426
QQA++ ++ A + EEL+ E +R A +++L K EE+ A
Sbjct: 88 QQAKQDSELAKLRAEELEQGIQELEVERYITATAELDSVKEELRKIRQEYDALVEERDAA 147
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
++ EE I +K + K L +E+ K E AA E + LEK +
Sbjct: 148 LKRAEEAICASKVNE-----KKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQ 202
Query: 487 EKR--KAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
++ + +E E+E E Q+++ E E+ E
Sbjct: 203 DRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASA 239
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 29.8 bits (68), Expect = 4.2
Identities = 16/124 (12%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
W+ + +A ++ + + + + +A++ +EE+ ++ + + A + +EE
Sbjct: 333 WKIDIMTEEEASEKRQAEFDAI--LDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEE 390
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
L +E + + + R+R ++ + +E E+ ++ + ++ ++ E+ +
Sbjct: 391 L-LEIEGFDEETVEELRERAKEALETEALAQE-------EKLADDLLSLEGLDRELAFKL 442
Query: 516 TEEN 519
E+
Sbjct: 443 AEKG 446
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 29.0 bits (65), Expect = 4.3
Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE--EEEVIRVAKNQQAERANKNAN 450
E+ ++E + + R + ++++K + K + V++ ++ N
Sbjct: 41 REQRKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNENFTDKENVEPE 100
Query: 451 I------LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
+ + D K + K A + +K + KL+K++++ +E E+EE
Sbjct: 101 QPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEE 156
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 30.0 bits (68), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 491 AMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
EEEEEEEE +E E E EEE +
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 29.6 bits (67), Expect = 5.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+R+ E EE E +E E EEE EE
Sbjct: 294 RRRRPPPSPPEPEEEEEEEEEVPEEEEEEEE 324
Score = 29.2 bits (66), Expect = 6.3
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEE 518
E EEEEE E + E E EEE EE
Sbjct: 302 PPEPEEEEEEEEEVPEEEEEEEEEEE 327
Score = 29.2 bits (66), Expect = 7.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+R+ E EEE E +E E EEE EE
Sbjct: 295 RRRPPPSPPEPEEEEEEEEEVPEEEEEEEEE 325
>gnl|CDD|218366 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 7, represents a mobile module of the RNA
polymerase. Domain 7 forms a substantial interaction
with the lobe domain of Rpb2 (pfam04561).
Length = 135
Score = 28.7 bits (65), Expect = 4.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
K +E K +E+E++V ++ +E M+
Sbjct: 101 KDDEGEKEDSVGDEDEDDVFLKRLESNMLSS 131
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 29.8 bits (68), Expect = 4.4
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 377 AERANKNANILLEELDMEKWREESKRAA---QAR---KRERKKQKKLEKKEEKRKAMEE- 429
E L E+L + E RAA + + K E + ++ EE +K EE
Sbjct: 16 KELKEATLEELAEKLGLPP--EAVMRAAEWLEEKGLVKVEERVEEVYVLTEEGKKYAEEG 73
Query: 430 --EEEVIRVAKN---------QQAERANKNANILLEELDMEKWR--EESKRAAQARKRER 476
E ++ K+ ++A K I L L + W E+ K + E
Sbjct: 74 LPERRLLNALKDGGEVSLDELKEALLDKKEVGIALGNLARKGWAKIEKGKVILKPDAYED 133
Query: 477 KKQKKLEKKEEKRKAMEEEEEEE 499
++K L+ E K EE+ +
Sbjct: 134 PEEKALKALAEGDKEELSEEDLK 156
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 30.1 bits (67), Expect = 4.5
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 34/150 (22%)
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 468
++ ++ ++EK+ RKA+E +++ + ++ ER REE +R
Sbjct: 432 KDHAERARIEKENAHRKALE-----MKILEKKRIERLE---------------REERERL 471
Query: 469 AQAR----KRERKKQKKLEKKEEKRKAMEEEEEEE-EEVEVQEVEGEMMEE--------E 515
+ R +RER ++++LE++ +R +E + + E V +E + +E+ +
Sbjct: 472 ERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRLEKARRNSYFLK 531
Query: 516 TEENDMHSSGGGRGEGEEGDSGIDANSQAS 545
EN + S+GGG G+G +G+ A S
Sbjct: 532 GMENGL-SAGGGPGDGPGVGAGVGAGVGTS 560
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 29.2 bits (66), Expect = 4.5
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
D EK +E K + +K R+ Q+ +K K ++E++ E+ + + E+M
Sbjct: 70 DQEKMKELQKMMKEFQKEFREAQE--SGDMKKLKKLQEKQM-----EMMDDQRELM 118
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members
of this family are components of the mitochondrial large
ribosomal subunit. Mature mitochondrial ribosomes
consist of a small (37S) and a large (54S) subunit. The
37S subunit contains at least 33 different proteins and
1 molecule of RNA (15S). The 54S subunit contains at
least 45 different proteins and 1 molecule of RNA (21S).
Length = 146
Score = 28.9 bits (65), Expect = 4.7
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD--- 457
+R + RKR K +K K K +E+ R K + E+L+
Sbjct: 15 QREQRKRKRLEKFIRKRTKSARGLKPVEDRIVPQLSVDE-AKRRQRKLLKLSPEDLERRA 73
Query: 458 --MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ W Q ++RE + Q+ ++ E +++A+EE + E E
Sbjct: 74 LIEKCWALY-----QQQEREAENQQLRQQYEAQQEALEELKLESPE 114
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 29.6 bits (67), Expect = 4.8
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 483 EKKEEKRKAMEEEEEEEEEV 502
A EEEEEEE+
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|129374 TIGR00273, TIGR00273, iron-sulfur cluster-binding protein. Members
of this family have a perfect 4Fe-4S binding motif
C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or
imperfect (the first Cys replaced by Ser) second copy.
Members probably bind two 4fe-4S iron-sulfur clusters
[Energy metabolism, Electron transport].
Length = 432
Score = 29.8 bits (67), Expect = 4.8
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 367 MVIRVAKNQQAERANKNANILLEEL-DMEKWREESKRAAQ-ARKRERKKQKKLEKKEEKR 424
++R A ER N +L+EEL E+WRE K + +L++ +R
Sbjct: 4 GILREALRNAQERLRANRKLLVEELGYWEEWRELVKEIKLKVLENLDFYLDQLKENVTQR 63
Query: 425 -------KAMEEEEEVIR-VAKNQQAERANKNANILLEELDMEKWREE 464
K EE ++I VA+ + ++ K+ +++ EE+ + + E+
Sbjct: 64 GGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMVSEEIGLNEVLEK 111
>gnl|CDD|184633 PRK14338, PRK14338, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 459
Score = 29.8 bits (67), Expect = 4.8
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
E+K+ +R+A+E+ +E ++A + A + +L+E KWR
Sbjct: 365 PEEKQRRRRALEQLQE--QIATERNARFLGQTVEVLVEGEAKGKWR 408
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 29.0 bits (65), Expect = 4.8
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
E K + E+KE K A ++ +++K ++A + L+ EK E++ A
Sbjct: 100 EAKFEAWKEEKEGKVNAKKD-----KLSKAKKAAKKAA--------LEAEKKVNEARAEA 146
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
A +K+ +A EEEE EE +E E E
Sbjct: 147 VA-----EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.6 bits (64), Expect = 6.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 469 AQARKRERKKQKKLEKK--EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
++A+K +K + EKK E + +A+ E++ E E EEE EE
Sbjct: 122 SKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAP 175
Score = 28.2 bits (63), Expect = 8.6
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 459 EKWREESKRAAQAR-KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+K + K A +A + E+K + + ++KA E EE E E E
Sbjct: 119 DKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEE 178
Query: 518 EN 519
Sbjct: 179 AP 180
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 28.1 bits (63), Expect = 5.1
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 468
R + K EK+ EKR + + + K+++ + + E ++ +E ++
Sbjct: 22 RPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKM 81
Query: 469 AQARKRERKKQKKLEKKEEKRKAMEE 494
A K KK ++L+++E++ K ++E
Sbjct: 82 AA--KMHAKKVERLKRREKRNKLLKE 105
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.9 bits (65), Expect = 5.1
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+ A K +K + A E E E E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 29.4 bits (66), Expect = 5.2
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 396 WREESK-RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
W S+ +A AR R +Q R E E R A A A A
Sbjct: 144 WDAWSQAQADAARARHDARQA--------RLRREREAAEARAAARAAASAAAAAAEASAA 195
Query: 455 ELDMEKWREESKRAAQARKRERKKQKKLE 483
E KRA A ER ++KK E
Sbjct: 196 AAPAADDAEAKKRAIIAAALERARKKKEE 224
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.6 bits (66), Expect = 5.2
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 13/158 (8%)
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK--WREESKR------AAQARK 473
+R A+ +E V K + R L EK +E R
Sbjct: 121 ARRLALFKEHGEYMVRKPKMNRREKLRERKALNAAKFEKNIEKELMLRLKSGIYGDTPLN 180
Query: 474 RERKKQKKLEKKEEKRKAMEE---EEEEEEEVEVQEVEGEMMEEETEENDMHS--SGGGR 528
K + EKR+ +E EEEEE + E++ V + +E+T++ D+
Sbjct: 181 VREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQS 240
Query: 529 GEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKK 566
E E + + S++ +E R+ D KK
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKK 278
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 29.7 bits (67), Expect = 5.2
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 379 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
R + + + + WRE + R R E +KQ + + E + + E+ K
Sbjct: 44 RVSGEGLAVASLVTVSTWRERTSRPDPERLAELRKQIRELEAE-----LRDLEDRGDALK 98
Query: 439 NQQ--AERANKNA------NILLEELDMEKWR-------EESKRAAQARKRERKKQKKLE 483
E + + E D+++W E +R + ++ ++LE
Sbjct: 99 ALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELE 158
Query: 484 KK-----EEKRKAMEEEEEEEEEVEV 504
K+ E + + + V V
Sbjct: 159 KQLSELQNELNALLTGKSQRSHTVLV 184
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 29.6 bits (66), Expect = 5.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 450 NILLEELDMEKWREESKRAAQARKRER----KKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
N L +E K+ E +K ++ K++ KK +K+EK E+ + E + E+ E
Sbjct: 338 NSLRDEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEK--ERLRIQSEMRDAEDIEEAI 395
Query: 506 EVE 508
E E
Sbjct: 396 EEE 398
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 29.4 bits (67), Expect = 5.3
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR-----KAM-EEEEEVIRVAKNQQ 441
LEEL R+ +R + R + + K++ L+K E +++ E+E + + QQ
Sbjct: 252 LEELK-ADIRKNLEREKKERAKNKLKEQLLDKLVENNEFELPESLVEQEIDRLLEQALQQ 310
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLEKKEEKRKAMEEE 495
++ + L++ + E+ REE + A+ R + K++K+E EE+ +A EE
Sbjct: 311 LQQQGIDLEEYLKDTE-EELREEFREEAERRVKLGLILEEIAKKEKIEVSEEEVEAEIEE 369
Query: 496 EEEEEEVEVQEV 507
++ + +EV
Sbjct: 370 LAQQYGEDPEEV 381
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.4 bits (66), Expect = 5.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+ +K + ++ + + K ++E+EEEEE E +E E E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
>gnl|CDD|107164 PHA02277, PHA02277, hypothetical protein.
Length = 150
Score = 28.5 bits (63), Expect = 5.4
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 392 DMEKWREE-SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
DMEKW E + ++ + K K+L++ + ++EE + +V A+ + N
Sbjct: 16 DMEKWIEAVVQGTVDGKQVDEKTAKQLDRIGSRSVSLEEATRIAKVLNAVTAQEVTGDFN 75
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+D+ E + K + K K EK+E K +EE ++++ E Q+
Sbjct: 76 DAFNAIDLMMIIMEDELGVTQEKVGKAKDKLNEKREAYLKEKQEELRQKQQEEAQK 131
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 29.5 bits (66), Expect = 5.4
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
Q++ E + EEEEE A+ EE ++ + E + Q +
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAG-----EEERTDEPKVEHEAHEQHEQ 191
Query: 474 RERKKQKKLEKKEEKRKAMEEEEE---EEEEVEVQEVEGEMMEEETEE 518
+ + + +E E E EEE E E E E+ E+ E+
Sbjct: 192 PADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEK 239
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.9 bits (68), Expect = 5.4
Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 18/181 (9%)
Query: 336 HVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
H+A +P E + + ELL +E IR + + + ++L
Sbjct: 704 HLASWPEVDEELIDEEAEKEFELL---KEIISAIRNLRAEMNLSPSAPLKVVL------V 754
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE-EVIRVAKNQQAERANKNANILLE 454
EE + +A + + K LE+ E EE EV V + L
Sbjct: 755 GSEELEDRLEANEDDIKGLANLEELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAA 814
Query: 455 EL-----DMEKWREESKRAAQ--ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
EL ++EK +E R + + + K + ++EK K + E + + ++E +
Sbjct: 815 ELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEK-LAEYQVKLAKLEERLA 873
Query: 508 E 508
Sbjct: 874 V 874
>gnl|CDD|177296 PHA00728, PHA00728, hypothetical protein.
Length = 151
Score = 28.7 bits (64), Expect = 5.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+K+ ++L+KK + +A+ E EE+ E+QE+E
Sbjct: 11 KKENEELKKKLAELEALMNNESAEEDEELQEIE 43
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.4 bits (64), Expect = 5.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
Q+RK E KK+++L+++ E+ +A E E E E +
Sbjct: 99 QSRK-EAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|218209 pfam04678, DUF607, Protein of unknown function, DUF607. This
family represents a conserved region found in several
uncharacterized eukaryotic proteins.
Length = 180
Score = 28.9 bits (65), Expect = 5.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
R +K+LE E+ +EE ++ I +++A R
Sbjct: 57 DRTHYLRKRLEALSEELAPLEEIKKEIDRLAHRRARR 93
>gnl|CDD|237462 PRK13665, PRK13665, hypothetical protein; Provisional.
Length = 316
Score = 29.5 bits (67), Expect = 5.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
E KR AQA K E+R+AM E+E + +VQE+ +++E E E
Sbjct: 240 EADKRIAQA-------------KAEERRAMAVALEQEMKAKVQEMRAKVVEAEAE 281
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 29.4 bits (66), Expect = 5.6
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEE--KRKAMEEEEEVIRVAKNQQAERAN 446
+ ++K +++ Q+R E KLEK E +RKA E + ++A+ + RA
Sbjct: 11 ADRKLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAERKA---LEALKKLAEATASIRA- 66
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
+N L +K RE Q + RK+Q+ L K + + +E+ ++
Sbjct: 67 QNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKA 126
Query: 507 VEGEMMEE 514
E + E
Sbjct: 127 ALNEALAE 134
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 28.8 bits (65), Expect = 5.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 481 KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
K +K EE EE E+ EE E +E E E E EE
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 28.4 bits (64), Expect = 7.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ +K ++ + +E + EEEE EEE +E E E ++E E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.9 bits (62), Expect = 5.7
Identities = 13/68 (19%), Positives = 32/68 (47%)
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E K+A K+ +++ + +++EK + + E ++E E E + E + + + +
Sbjct: 38 EFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPAT 97
Query: 524 SGGGRGEG 531
G+G
Sbjct: 98 VASKAGDG 105
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 29.4 bits (66), Expect = 5.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
RKKQ + KKE+K K + + + E V+++ + E E
Sbjct: 68 RKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNERE 107
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.2 bits (63), Expect = 5.8
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 458 MEKWREESKRAAQARKRERKK-QKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+EK + + Q + E K+ Q +LE++ KR E+ E E+ E +E E
Sbjct: 57 LEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQE 108
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 28.6 bits (64), Expect = 5.8
Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLE---------KKEEKRKAMEE--EEEEEEEV 502
E LD EK R E + K+ KK K+L K+E R E E E
Sbjct: 94 EALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRVHEHEFGPETNGVEE 153
Query: 503 EVQEVEGEMMEEETEENDM 521
+ E M
Sbjct: 154 DTYRRTCTTCGLEETYEKM 172
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 29.4 bits (66), Expect = 5.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
RK K+ KR E +EEE EE +E + E E E
Sbjct: 385 RKFLKEKGHPVVKRVVREVDEEEIEE---EEEAMQPEEMEME 423
Score = 28.7 bits (64), Expect = 9.9
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E++K + RK ++K + K+ + EE EEEEE ++ +E+E E E
Sbjct: 376 EDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 29.1 bits (64), Expect = 5.8
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
EK K EE++ K ++ E ++N I E+ +K + R R +E + K
Sbjct: 144 EKLKKNAEEKDATIQRKTKEMEEDSRN-QIAHHEIQQKKNEIQKLRNDLKRGQEHRDAKL 202
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
++ R +EE ++ E+Q + EM
Sbjct: 203 RVEESMARVKGLKEELKQLTDELQHAKSEM 232
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 29.6 bits (66), Expect = 5.9
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 412 KKQKKLEKKEEKRKAMEEE-----EEVIRVAKNQQAERANKNANIL----LEELDMEKWR 462
KK + + K +K+K + +E E+ + K++ + K N+ L +L +EK
Sbjct: 1173 KKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKID 1232
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
EE K++ K + L++ +EK +E E E +++ +
Sbjct: 1233 EEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAE 1275
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 29.7 bits (66), Expect = 6.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 443 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-----KEEKRKAMEEEEE 497
E+ + +IL + D EE + + + E K++ LEK EEK K EE +
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKF 283
Query: 498 EEEEVEVQEVEGEMME 513
E +V+ + + G E
Sbjct: 284 IEHDVKDRNIAGGFSE 299
Score = 29.3 bits (65), Expect = 8.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 378 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-----KEEKRKAMEEEEE 432
E+ + +IL + D EE + + + E K++ LEK EEK K EE
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE--- 280
Query: 433 VIRVAKNQQAER 444
I+ ++ +R
Sbjct: 281 -IKFIEHDVKDR 291
>gnl|CDD|221514 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 571 and 1310 amino
acids in length. There are two conserved sequence
motifs: LPA and ELH. EVC2 is implicated in Ellis van
Creveld chondrodysplastic dwarfism in humans. Mutations
in this protein can give rise to this congenital
condition. LIMBIN is a protein which shares around 80%
sequence homology with EVC2 and it is implicated in a
similar condition in bovine chondrodysplastic dwarfism.
Length = 429
Score = 29.4 bits (66), Expect = 6.2
Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 7/147 (4%)
Query: 364 ECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 423
E + + R + +A R + +++ + ++ + Q +R KK E+
Sbjct: 152 EIATLNRADADLEACRLQISKDVI--AILLKNLVSSGHLSPQTERRMSSVFKKQFLLLER 209
Query: 424 RKAMEEEEEVIRVAKNQQAE-RANKNANILLEELDMEKWREESKRAAQARKRERK----K 478
R E E +++ + E R A E +ME+ E KRA + E
Sbjct: 210 RLQEEYERKMVALTAECNLETRKKMEAQHQREMAEMEQAEELLKRAPEREAVECSSLLDT 269
Query: 479 QKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
LE++ +R + ++EE+ + Q
Sbjct: 270 LHGLEQEHLQRSLLLQQEEDFAKAHRQ 296
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 29.0 bits (65), Expect = 6.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 486 EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+E+ + +E+EE+E V+E E E+ EEE +E
Sbjct: 37 DEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEG 71
>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 280
Score = 29.0 bits (65), Expect = 6.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ 470
KL +K+K +E+E E R +AE+ + A IL + MEK E KR ++
Sbjct: 174 KLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEK--ETEKRISE 226
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 29.3 bits (66), Expect = 6.4
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 28/135 (20%)
Query: 397 REESKRAA--QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK------- 447
+E RAA +R R+ ++ + L +E++ ++EE+ E+ ++ +
Sbjct: 254 QEALIRAATRMSRTRDPRRPRDL--TDEQKASVEEDPELQE-LIRKRDHLKKEIIALYGQ 310
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
A L E+ + + R+R R++ KK + EE +EE V ++
Sbjct: 311 VAKAKGTPLY-ERLEKRRREVRNERQRLRRELKK-----------KIREEFDEEQPVIDI 358
Query: 508 E----GEMMEEETEE 518
E G + EE +E
Sbjct: 359 ERQLSGLAVSEEVKE 373
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 29.5 bits (67), Expect = 6.4
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANIL--LEELDMEKWREESKRAAQARKRERKK 478
E + ++E+E++++ + A +L +E L +E+ +E K + KK
Sbjct: 704 EAALEYLQEQEDLLK----EIASLLKVPPELLPKVERL-LEELKELEKELERL-----KK 753
Query: 479 QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+ + + + EE +V +EV+G M+E
Sbjct: 754 KLAAAELADLLSNAKAEEIGGVKVLAKEVDGADMKE 789
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 28.8 bits (65), Expect = 6.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E+ +Q + E +E + + E+E EEE VE + + EE+ + ++
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAEL 49
>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.
Length = 156
Score = 28.2 bits (64), Expect = 6.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
AERA K + + E E++ A + KK+ +E K +A E +
Sbjct: 46 AAERAKKELELAQAK--YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA 103
Query: 436 VAKNQ-QAERA 445
A+ + + ER
Sbjct: 104 QAQAEIEQERK 114
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 29.4 bits (66), Expect = 6.6
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
KE K K E++EE+ EEV+ +EV+ E EEE
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 28.1 bits (63), Expect = 6.7
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAE---RANKNANILLEELDMEKWREESKRAAQARKR 474
K+E A ++ + +++ AK++ E ANK + +LEE K A+ +
Sbjct: 40 RAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEA---------KAEAREERE 90
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ K Q + E + EK +A EE ++ ++ V E +++E ++
Sbjct: 91 KIKAQARAEIEAEKEQAREELRKQVADLSVLGAE-KIIERNIDK 133
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 28.5 bits (64), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 403 AAQARKRERKKQKKLEKKEEK 423
A+ + + K+Q+KLEK+ EK
Sbjct: 146 GAETNETKSKRQEKLEKRGEK 166
Score = 28.5 bits (64), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 468 AAQARKRERKKQKKLEKKEEK 488
A+ + + K+Q+KLEK+ EK
Sbjct: 146 GAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 26.6 bits (59), Expect = 7.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
+ E++K + EK+E + + EEEEE I+ + + +AN
Sbjct: 16 KLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKELVPKAN 55
>gnl|CDD|204467 pfam10376, Mei5, Double-strand recombination repair protein. Mei5
is one of a pair of meiosis-specific proteins which
facilitate the loading of Dmc1 on to Rad51 on DNA at
double-strand breaks during recombination. Recombination
is carried out by a large protein complex based around
the two RecA homologues, Rad51 and Dmc1. This complex
may play both a catalytic and a structural role in the
interaction between homologous chromosomes during
meiosis. Mei5 is seen to contain a coiled-coli region.
Length = 212
Score = 28.6 bits (64), Expect = 7.2
Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 29/154 (18%)
Query: 355 DKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER--- 411
+ LD+ + E N ++ + + + S + + K R
Sbjct: 59 ENFELDQAVSEPPESSLKNIDSEENETSNEKLIEKWRTICQSESRSILNSSSPKINRMGG 118
Query: 412 -----KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
+K+ + EK++ + + EE +++ R L+ ++ + + +
Sbjct: 119 YKDFKRKELEAEKRKLEYQVDEESDDLRR-----------------LKLVEKYEIKNDLS 161
Query: 467 R-AAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+K E+ KQ++LEK + K + EEE EE
Sbjct: 162 ELQELIKKWEKAKQRELEKLQ---KELAEEEGEE 192
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 26.8 bits (60), Expect = 7.3
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ E EEEEE E E E E EEE +++DM
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 29.1 bits (66), Expect = 7.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 474 RERKKQKKLEKKE--EKRKAMEEEEEEEEEVEVQEVE 508
+RK+Q+ EK++ E+ K EEEEEEE +V ++
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 29.3 bits (65), Expect = 7.4
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKW----REE 464
R+ +K+ E ++E+ + I + ++AE A L + W
Sbjct: 584 RKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKMRR 643
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE---VQEVEGEMMEEETEENDM 521
KR + R ++ K+L+KK + + +E E+ V ++ + +E E +E
Sbjct: 644 IKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLKEIEVEDDEKTP 703
Query: 522 HSSGGGRGEGEEGDS 536
S GG E EEG S
Sbjct: 704 ILSPGGDEEVEEGLS 718
Score = 28.9 bits (64), Expect = 9.7
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
A N++A EEL + K E R R+ + ++L +EE RKA +
Sbjct: 345 LDAGLENESALKKQEELALNKLSVEEVAE---RTRQLRFMRELMFREE-RKAKRVAKIKS 400
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK--------E 486
+ + + R K ++ + D+E + E RA + + K +K E
Sbjct: 401 KTYRKIRKNRKEKEMALIPKSEDLENEKSEEARALERMTQRHKNTSSWTRKMLERASHGE 460
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
R+A+ E+ + +E+ + E+M+ E
Sbjct: 461 GTREAVNEQIRKGDELMQRIHGKEIMDGE 489
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 26.2 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 486 EEKRKAMEEEEEEEEEVEVQEVEG 509
EE+++ EEE E+EEE E Q
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 26.9 bits (60), Expect = 7.6
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
RK ++KK+ K K E + ++A+ A KN + L ELD K +EE
Sbjct: 9 AYRKEQKKKELKKNKAERQ--------------ARREAKLAKKNPDRLQRELDKLKAQEE 54
Query: 465 SKRAAQARKRERKKQKKLEK 484
S + R E++K KKLEK
Sbjct: 55 S---GKLRPVEKQKLKKLEK 71
>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39). Found in eukaryotes,
Rab39 is mainly found in epithelial cell lines, but is
distributed widely in various human tissues and cell
lines. It is believed to be a novel Rab protein involved
in regulating Golgi-associated vesicular transport
during cellular endocytosis. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 211
Score = 28.6 bits (64), Expect = 7.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 58 KVVDILLNHKADMEAQSERTKDTPLSLA 85
+ V IL+ HK D+E+Q + T++ LA
Sbjct: 109 RPVFILVGHKCDLESQRQVTREEAEKLA 136
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 29.0 bits (64), Expect = 7.7
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 440 QQAERAN----KNANILLEELDMEKWRE-ESKRAAQARKR---------ERKKQKKLEKK 485
Q+A R+N + I LE++ WR E+K A+ K ++ K+ K
Sbjct: 86 QRARRSNRCRQEGIKIGLEDI-FTLWRHVETKVRAKICKMKVTTKINHHDKINGKRKTAK 144
Query: 486 EEKRK-AMEEEEEEEEEVEVQEVE 508
E RK +M+E E E+E +V E E
Sbjct: 145 EHLRKLSMKECEHAEKERQVSEAE 168
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 27.9 bits (63), Expect = 8.0
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 26/130 (20%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEKKEE-------KRKAMEEE----EEVIRVAKN 439
L+ E +E RA + ++ ++ +++ +KE+ K + +EEE EE ++ AK
Sbjct: 7 LEAENAQE---RAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEAKE 63
Query: 440 QQAERANKNANI--------LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ E N LLEE ++E E KR + ++ R+ KK E+ E K KA
Sbjct: 64 KLEESEKLATNAEALTRRIQLLEE-ELE---ESEKRLKETTEKLREADKKAEESERKVKA 119
Query: 492 MEEEEEEEEE 501
+E E +E EE
Sbjct: 120 LENERDEWEE 129
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.1 bits (65), Expect = 8.0
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E ++++ + E+ E E+E E + V E EM E + +D+
Sbjct: 332 VEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDL 379
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 28.5 bits (64), Expect = 8.0
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRV-------AKNQQAERAN 446
+ +++E K+ + + R + KKL+KK +K + +E++ + K +A +
Sbjct: 115 KDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQ 174
Query: 447 KNANILLEE 455
+ LLEE
Sbjct: 175 GLRDALLEE 183
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 28.5 bits (64), Expect = 8.2
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 413 KQKKLEKKEE-KRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
+Q+ EK EE + +A EE E A + ++ + ++ +MEK S +A
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNEA 62
Query: 472 RKRERKKQKKL-----EKKEEKRKAMEEEEEEEEEV 502
R + +++L E+ +E+ + E+++E +++
Sbjct: 63 RLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDL 98
>gnl|CDD|216742 pfam01855, POR_N, Pyruvate flavodoxin/ferredoxin oxidoreductase,
thiamine diP-bdg. This family includes the N terminal
structural domain of the pyruvate ferredoxin
oxidoreductase. This domain binds thiamine diphosphate,
and along with domains II and IV, is involved in inter
subunit contacts. The family also includes pyruvate
flavodoxin oxidoreductase as encoded by the nifJ gene in
cyanobacterium which is required for growth on molecular
nitrogen when iron is limited.
Length = 230
Score = 28.4 bits (64), Expect = 8.2
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225
E + L+D RA+ L P M A G
Sbjct: 170 EDLKDLVDEFLPPYKRARYALDPEMPIARGTA 201
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 28.9 bits (65), Expect = 8.2
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 394 EKWREESKRAAQARK------RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAE---- 443
+K + E +A AR RE +K K K+E K ++ EEEE+ + + Q+
Sbjct: 60 DKLQSEHSKAILARSKLESLCRELQKHNKTLKEENKARSDEEEEKRKELTEKFQSTLKDI 119
Query: 444 ----RANKNANILLEELDMEKWREESKRAAQARKRERK-----KQKKLEKKEEKRKAMEE 494
+ N N L E + E + + Q RE+ K K LE++ K +
Sbjct: 120 QDQMEEHSNPNHKLCEENEELREKLKELIEQYELREQHFEKLLKTKDLEQQLNDAKLEQA 179
Query: 495 EEEEEEEVEVQEVEGEMMEEET 516
+E+ E+E E + E E++ +E
Sbjct: 180 QEQAEQEQEKHKREKEILLKEA 201
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 28.9 bits (64), Expect = 8.4
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR--EESKRA 468
+++ KKL+K ++ K +E+V K++Q N+ L E ME+++ E+ +
Sbjct: 38 KREIKKLQKHRDQIKTWLSKEDV----KDKQVLMTNRR----LIENGMERFKSVEKLMKT 89
Query: 469 AQARKRERKKQKKLEKKEEKRK--------AMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
Q K ++ KE K++ ++E +++ E+ E QE EE+TE ++
Sbjct: 90 KQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQE-----NEEQTERHE 144
Query: 521 MH 522
H
Sbjct: 145 FH 146
>gnl|CDD|220520 pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members
of this family of bacterial proteins comprises various
hypothetical and putative membrane proteins. Their exact
function, has not, as yet, been defined.
Length = 369
Score = 28.7 bits (65), Expect = 8.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 349 YIQTVNDKELLDKCQECSMVIRVA 372
Y+Q ++ LL+ +E VI +
Sbjct: 204 YLQHIDYDALLELAEEHDGVIYLL 227
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is
a family of eukaryotic proteins of unknown function.
Some of the proteins in this family are putative nucleic
acid binding proteins.
Length = 158
Score = 27.9 bits (62), Expect = 8.5
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
R S+ + +R+R+RK+++ + +E K++ ++ +EE+ + E EMM
Sbjct: 58 RHRSRSRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMM 108
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 29.0 bits (65), Expect = 8.7
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
+ EL E ++E+K Q K+E +K++ K + + + E I A + AE +
Sbjct: 360 ISELLKEGSKQETK--EQPEKKEEEKEELDIDKIILQ--IIKNEGKIISAILKNAEIKEE 415
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
I ++ +EK E++ K +K +E +E K++ +E+E E +V E+
Sbjct: 416 EGKITIK---VEKSEEDTLDLEI--KSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLEL 470
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 28.9 bits (65), Expect = 8.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+E+ + +E+ EEEEEE + E E E E+E EE +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 29.1 bits (65), Expect = 8.8
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKK---EEKRKAMEEEEEEEEEVEVQEVE 508
L LD+ K E R Q + E + + LE+ E++ +A+E+ E E E +
Sbjct: 625 LQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESES------D 678
Query: 509 GEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
GE EE+ +E+D ++ G + +
Sbjct: 679 GEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNL 714
Score = 29.1 bits (65), Expect = 9.6
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGID 539
K E K ++ E EEE+E+++E + + + E + S G GE +E + +
Sbjct: 633 KADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Query: 540 ANSQASCSSNEVKTAAP 556
AN V+ A P
Sbjct: 693 ANEGVVPIDKAVRRALP 709
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 27.4 bits (61), Expect = 8.8
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 443 ERANKNANILLEELDME--KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
E+A + A ++ + E K EE + A+ ++ ++KK E +EE +K +EE E+E E
Sbjct: 20 EKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIE 79
Query: 501 EVEVQEVE 508
E++V+ E
Sbjct: 80 ELKVKAEE 87
>gnl|CDD|204055 pfam08764, Coagulase, Staphylococcus aureus coagulase.
Staphylococcus aureus secretes a cofactor called
coagulase. Coagulase is an extracellular protein that
forms a complex with human prothrombin, and activates it
without the usual proteolytic cleavages. The resulting
complex directly initiates blood clotting.
Length = 282
Score = 28.6 bits (64), Expect = 8.8
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEV 504
L +L M+++ E SK A + +K+ KK++ K K EEEEE+ EV
Sbjct: 108 LYDLTMKEYNEISKSLKDAVEDFKKEVKKIQSKNSDLKPYSEEEEEKATDEV 159
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 27.1 bits (60), Expect = 9.1
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 415 KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 474
+K+E++E +R EE+ + AK ++ +E+ +E+ ++ +
Sbjct: 3 RKVERRESRR-----EEKALVAAKLEKT----------IEKELLERLKQGTYGDEPYNIS 47
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVE-VQEVEGEMMEEETEENDM 521
+ +K LE +E + EEEEEEEEE E E + E E E D+
Sbjct: 48 QSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 27.5 bits (61), Expect = 9.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 426
+E ME +EE +R+A+ + E +++ E++EEKRK
Sbjct: 74 MEATFMEIQKEE-RRSARMARLEDERELAREEEEEKRKK 111
Score = 27.5 bits (61), Expect = 9.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+E ME +EE +R+A+ + E +++ E++EEKRK
Sbjct: 74 MEATFMEIQKEE-RRSARMARLEDERELAREEEEEKRKK 111
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 28.9 bits (65), Expect = 9.1
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 452 LLEELD--MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
L EEL+ +EK +E+ + K ER K+++ + K+K + + E
Sbjct: 342 LREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 28.6 bits (64), Expect = 9.1
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA--------------- 449
Q R RK K +K + E R +K Q+A + K+
Sbjct: 117 QYLIRMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGD 176
Query: 450 --NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
N + + EE + A+ + K +KK +E E+E E
Sbjct: 177 IYNFPSKSYNKVLEMEEVE-EAEEELPKSDKNPNSKKKSRVHVEIEYEDEIE 227
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 27.2 bits (61), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 493 EEEEEEEEEVEVQEVEGEMMEEETEE 518
E E EE+E+ E E + E+E EE
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEE 42
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 29.0 bits (65), Expect = 9.2
Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 19/127 (14%)
Query: 377 AERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRV 436
+ A LE L +E+ + A R+R ++ L EEEV +
Sbjct: 728 GRASPAGALDALELLQNI--KEKLQAADDLRQRIAAMERDLA---------RFEEEVEAL 776
Query: 437 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 496
A+ E A+ L +R +AR +K E+ EE K + E
Sbjct: 777 AEAVAPEMLGTPADETARAL--------KQRLKRARDTAAAAEKLAEEIEEAEKEVSEAA 828
Query: 497 EEEEEVE 503
+E E
Sbjct: 829 AALDEAE 835
>gnl|CDD|185626 PTZ00447, PTZ00447, apical membrane antigen 1-like protein;
Provisional.
Length = 508
Score = 28.8 bits (64), Expect = 9.4
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 434 IRVAKNQQAERANKNANILLEELDMEK-----------WREESKRAAQARKRERKKQKK- 481
++V K E+ N++++E +M+K +R ++A +E QK
Sbjct: 356 LKVLKESCGEKLELRKNMIMQEANMKKLMGKRRLSSPRFRRNIPKSAHKMIKEMYVQKDS 415
Query: 482 -----LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGE 532
E+ E K +EE+E + + E+E + +E+ END + EG+
Sbjct: 416 LETTAGERDEFKNDVLEEDEISGDNIGPDEIENDHYQEKEIENDNIQYDENKNEGK 471
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 28.3 bits (63), Expect = 9.4
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
R R R QK+ +KE + +V + Q+A L+ + R +
Sbjct: 55 RPRWRSLQKRSSEKEI------TVFDPDKVVRRQEA-------------LEAARLRMQED 95
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
A+A + K+K+ + +EEKR+ E + +E + +V ++ +E TEE S
Sbjct: 96 LDAKA---AKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAKLAQEATEETSSSSV 150
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 28.9 bits (65), Expect = 9.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 463 EESKRAAQARKRERKKQKKLEK--KEEKRKAMEEEEEEEEE 501
E ++K +K K EK +E KA E+E++
Sbjct: 6 VEESGEKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDD 46
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 28.8 bits (64), Expect = 9.6
Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 10/158 (6%)
Query: 398 EESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+ QA K E + + + +K M E E ++ ++ E+ N+ + + E
Sbjct: 346 DHGPEKPQATKLEPEVADEFADRVAKKVADMTAEIEKLKKRHARRMEKFNRTSALKDAEQ 405
Query: 457 DM-EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
+ + + + ++ + E + + E ++ E + + + + V+EVE +
Sbjct: 406 RLRDAAADPADTGSEIWRLEGRLEIDTEDDSSRQGPREHKAKYKVDDIVREVEKSWGKPI 465
Query: 516 TEENDMHS-SGGGRGEGEE-------GDSGIDANSQAS 545
E D+ GG E E GDS ID S
Sbjct: 466 VPEPDVSCVEKGGLLEKIEPEPSLIIGDSDIDMGHTDS 503
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 9.9
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
E+ K + + + K+ EK+E+++ EEE
Sbjct: 327 EDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRT 366
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.127 0.355
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,519,639
Number of extensions: 2953148
Number of successful extensions: 17140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9934
Number of HSP's successfully gapped: 1822
Length of query: 596
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 494
Effective length of database: 6,413,494
Effective search space: 3168266036
Effective search space used: 3168266036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (27.5 bits)