RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy904
(596 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 348 bits (895), Expect = e-115
Identities = 122/337 (36%), Positives = 166/337 (49%), Gaps = 11/337 (3%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
ES T L +A GH +V+ LL RGA + K TPL +AA AGH +V
Sbjct: 6 SGGGGGESG-LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
LL +KA + A+++ TPL A G +V+LLL AN + +TPL +AA
Sbjct: 65 YLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
G+V + LL A T K G +PL +AA G +LLL+ + NA + N
Sbjct: 124 GHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGL 180
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
T L +A ++V LLL R + A G TPL AA VEV R LL G NA
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240
Query: 242 PPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
S T L +AA +GH V LLLSK A + NK G +PL L A GH+ V ++
Sbjct: 241 E----SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
L KHG +D+ + L A G++K V++++ H
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Score = 341 bits (877), Expect = e-112
Identities = 101/335 (30%), Positives = 163/335 (48%), Gaps = 7/335 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ +T L +A GH E+ + LL A + + K TPL AA GH +V
Sbjct: 39 SPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + A+ + TPL +A G E V LL + A++ +TPL +AA
Sbjct: 98 LLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
G V + +LLL A N+ K G++PL +A + + VKLLL G ++ N
Sbjct: 157 GKVRVAELLLERDAHPNAAG--KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGY 213
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
T L +A Q + EV LL + + G+TPL AA G+ E+ +LL K A+ N
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
S T L + A +GH ++L+ G V+ + G +PL +A++ G++ +V+ L
Sbjct: 274 GN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 302 KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+H AD++++ S L A ++GH V ++ +
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366
Score = 337 bits (867), Expect = e-110
Identities = 114/344 (33%), Positives = 161/344 (46%), Gaps = 19/344 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
V+++ + + T L A GH +V+LLL A+ G TPL +AA GH + V
Sbjct: 72 KVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
LL +A TK TPL +A G+ V ELLL R A+ + TPL +A
Sbjct: 131 ALLEKEASQACM---TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187
Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN 179
++I+KLLL G +S G +PL +AA + LL G NA+
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-Q 244
Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
T L LA +G E+V+LLL ++AN K+GLTPL A G+V V VL+ G V
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
+A T L +A+ G+ + V+ LL A V K K G SPL AA GH
Sbjct: 305 DA------TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358
Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+V LL K+GA + + + L A R G++ + +
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 314 bits (806), Expect = e-101
Identities = 94/305 (30%), Positives = 140/305 (45%), Gaps = 6/305 (1%)
Query: 32 SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
S G + G TPL +A+ GH +V LL A + + +TPL +A G
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHT 60
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
EV + LL A + D TPL AA G+ N++KLLL + A N T G +PL
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLH 118
Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
+AA GH V LL+ + T L +A G+ V LLL+R A+ K
Sbjct: 119 IAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177
Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
GLTPL A +++ ++LL +G ++P + T L IAA + LL G
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQYG 235
Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
++ +G +PL LAA GH +V LL A+ + + ++ L ++GHV
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 332 WMVNH 336
++ H
Sbjct: 296 VLIKH 300
Score = 286 bits (734), Expect = 8e-91
Identities = 85/313 (27%), Positives = 128/313 (40%), Gaps = 27/313 (8%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
T+ T L +A G + ELLL R A K G TPL +A + +V
Sbjct: 138 SQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + + TPL +A + EV LL G + +V TPL LAA
Sbjct: 197 LLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
G+ ++ LLL+ A N K G++PL L A GH +L+ G ++A
Sbjct: 256 GHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGY 312
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
T L +A G ++V LL +A+V + K G +PL +AA G+ ++ +LL GA N
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372
Query: 242 PPVPSSRD----TALTIAADKGHCRFVELL---LSKGAQVEVKNKKGNSPLWLAANGGHL 294
T L IA G+ ++L + + V V +K
Sbjct: 373 ------VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM---------SFP 417
Query: 295 SVVELLCKHGADI 307
V+ + D
Sbjct: 418 ETVDEILDVSEDE 430
Score = 221 bits (565), Expect = 5e-66
Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 17/243 (6%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
S + + T L +A E+ LL G +G TPL LAA GH ++V
Sbjct: 204 SPHSPAWNGY-TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL+ +A+ ++ + TPL L G V ++L+ G + YTPL +A+
Sbjct: 263 LLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
G + ++K LL H A++N++T KLG SPL AA GHT V LLL G+ N ++
Sbjct: 322 GNIKLVKFLLQHQADVNAKT--KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGT 378
Query: 182 TALTLACFQGRHEVVSLL---LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
T L +A G V +L D + V K ++ E +LD D
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ETVDEILDVSED 429
Query: 239 VNA 241
Sbjct: 430 EGE 432
Score = 155 bits (395), Expect = 8e-42
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + + + T L L GH + ++L+ G ++ + G+TPL +A+ G+ K+V
Sbjct: 270 NGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
LL H+AD+ A+ TK +PL A G ++V LLL GA+ + TPL++A
Sbjct: 329 FLLQHQADVNAK---TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Query: 120 SGGYVNIIKLLLT---HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
GY+++ +L + + K V +LD+ D ++
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVS--DKHR---------MSFPETVDEILDVSEDEGEEL 434
Score = 107 bits (271), Expect = 3e-25
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
G S T L +A+ GH V+ LL +GA V N K +PL +AA GH
Sbjct: 3 PGISGGG--GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
V + L ++ A ++++ + L A R GH V+ ++ + A
Sbjct: 61 EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Score = 89.1 bits (222), Expect = 4e-19
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++T+ + L A GH ++V LLL GA G TPL +A G+ V D
Sbjct: 336 DVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394
Query: 62 IL---LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVS 110
+L + + + ++ + + E V+ +L ++ +S
Sbjct: 395 VLKVVTDETSFVLVS-DKHRMSFP---------ETVDEILDVSEDEGEELIS 436
Score = 77.5 bits (192), Expect = 2e-15
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
S G + G +PL +A+ GHL +V+ L + GA + + + + L A R GH +
Sbjct: 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 329 AVRWMVNHVAQ 339
++++ + A+
Sbjct: 62 VAKYLLQNKAK 72
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 289 bits (742), Expect = 3e-93
Identities = 90/320 (28%), Positives = 133/320 (41%), Gaps = 33/320 (10%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
E D L A +G E+L+ LL + D + TPL LAA ++V
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
+LL H AD+ A+ K PL ACS G YEV ELLL GA ++ +TPL AA
Sbjct: 76 LLLQHGADVHAK---DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132
Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN 179
S V + LLL+HGA+ G S + +A +
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVN--CHGKSAVDMAPTPELRERLTYEFK------------ 178
Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY---VEVGRVLLDKG 236
+L A + V L + + ++ T L A + + +V +LL KG
Sbjct: 179 -GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 237 ADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
A+VN ++ T L +AA++ H +E+L GA++ + G + L AA G
Sbjct: 238 ANVNE------KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 293 HLSVVELLCKHGADIDSQDN 312
HL LL +G+D
Sbjct: 292 HLQTCRLLLSYGSDPSIISL 311
Score = 265 bits (681), Expect = 4e-84
Identities = 89/320 (27%), Positives = 137/320 (42%), Gaps = 22/320 (6%)
Query: 21 GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH-DKVVDILLNHKADMEAQSERTKD 79
G + L A + L+ AA +G+ +K++ +L + A R K
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KS 59
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL LA R +V+LLL GA+ ++ PL A S G+ + +LLL HGA +N+
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+PL AA LLL G+D + +A+ +A E ++
Sbjct: 120 MD--LWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYE 176
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
G + L A +V + L P S +TAL A
Sbjct: 177 FK-----------GHSLLQAAREADLAKV-KKTLALEIINFKQP--QSHETALHCAVASL 222
Query: 260 HCRF---VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
H + ELLL KGA V KNK +PL +AA H V+E+L KHGA +++ D+ +
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282
Query: 317 CLMAAFRKGHVKAVRWMVNH 336
L A GH++ R ++++
Sbjct: 283 ALHRAALAGHLQTCRLLLSY 302
Score = 263 bits (675), Expect = 3e-83
Identities = 89/314 (28%), Positives = 133/314 (42%), Gaps = 27/314 (8%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ ++ T L LA +V+LLL GAD+ +DK G PL A + GH +V +
Sbjct: 50 NCH-ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL H A + A + TPL A S R EV LLL+ GA+ N + + +A +
Sbjct: 109 LLLKHGACVNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
+ + L+ AA A VK L + Q + +
Sbjct: 168 ELRERLTYEFKGHS--------------LLQAAREADLAKVKKTLALEIINFKQPQ-SHE 212
Query: 182 TALTLACFQG---RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
TAL A R +V LLL + ANV + K +TPL AA + +V VL GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
+NA + S TAL AA GH + LLLS G+ + + +G + + V+
Sbjct: 273 MNA--LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQ 325
Query: 299 LLCKHGADIDSQDN 312
+ + + D
Sbjct: 326 QILSESTPMRTSDV 339
Score = 225 bits (577), Expect = 9e-69
Identities = 67/298 (22%), Positives = 116/298 (38%), Gaps = 37/298 (12%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV ++ + L AC+ GH E+ ELLL GA + D FTPL AA+ +V
Sbjct: 83 DVHAKDK-GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL+H AD + K + + +A + E + + L A
Sbjct: 142 LLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGH-----------SLLQAAREA 189
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA---VKLLLDMGSDINAQIET 178
+ K L + + L A + H +LLL G+++N + +
Sbjct: 190 DLAKVKKTLALEIINFKQ---PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK- 245
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ T L +A + ++V+ +L A + G T L AA G+++ R+LL G+D
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
+ TA + + V+ +LS+ + + L A+ G
Sbjct: 306 PSI------ISLQGFTAAQMGNEA-----VQQILSESTPMRTSDVDY--RLLEASKAG 350
Score = 154 bits (392), Expect = 3e-42
Identities = 47/183 (25%), Positives = 69/183 (37%), Gaps = 4/183 (2%)
Query: 156 NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLT 215
G +A L D + E ++ L A ++++LL N T
Sbjct: 3 FGKSA--LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 216 PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE 275
PL AA V + ++LL GADV+A L A GH ELLL GA V
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118
Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+ +PL AA+ + V LL HGAD + S + A + + +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178
Query: 336 HVA 338
+
Sbjct: 179 GHS 181
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 286 bits (734), Expect = 5e-93
Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 21/297 (7%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKK-----GFTPLILAATAGHDKVVDILLNHKADME 71
+ + H L+ RG+ + D K G P G LL++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A S+ + P+ A G + L+++G +PL A GG+++ +K+LL
Sbjct: 56 AVSDWS---PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
HGA++N T +PL A ++G V LLL G+ + E++ + + A +G
Sbjct: 113 KHGAQVNGVT--ADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRG 168
Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA 251
E V+ L+ N++H+ TPL A + LL+ GADVN +D+
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG---KGQDSP 225
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
L LL+ GA + KN +G P+ L L L + GA +
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281
Score = 234 bits (600), Expect = 4e-73
Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ + A GH+ + L+S+G + +PL A GH V ILL H A +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
T D TPL AC G ++ V LLL GA+ + + +P+ AA G+V + L
Sbjct: 121 ---VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
+ +G I+ + +PL LA N A VK LL+ G+D+N +++ L
Sbjct: 177 IAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVVRT 232
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
E+ LL+D A+ + + G P+ + L +GA + P
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLEREGASLPKPK 284
Score = 219 bits (560), Expect = 4e-67
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 19/258 (7%)
Query: 84 LACSGGRYEVVELLLTRGANKEHRNVSD-----YTPLSLAASGGYVNIIKLLLTHGAEIN 138
+ S + L+ RG++ + P G LL++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
+ + SP+ AA++GH +++ L+ G +N + + L AC G V +
Sbjct: 56 AVSDW----SPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKI 110
Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
LL A V TPL A G + +LL GA V S + + AA +
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE---SDLASPIHEAARR 167
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
GH V L++ G ++ K +PL+LA + V+ L + GAD++ + S L
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPL 226
Query: 319 MAAFRKGHVKAVRWMVNH 336
A R + +++
Sbjct: 227 HAVVRTASEELACLLMDF 244
Score = 203 bits (520), Expect = 3e-61
Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 8/206 (3%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
V+ T +H + L AC GGH V++LL GA + TPL A +G V+
Sbjct: 84 AVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL H A ++ +S+ +P+ A G E V L+ G N +H+ TPL LA
Sbjct: 143 LLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
+K LL GA++N K SPL LL+D G+D A+
Sbjct: 201 QQRACVKKLLESGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAK-NAEGK 256
Query: 182 TALTLACFQGRHEVVSLLLDRKANVE 207
+ L + L A++
Sbjct: 257 RPVELVPPES-PLAQLFLEREGASLP 281
Score = 188 bits (480), Expect = 1e-55
Identities = 53/230 (23%), Positives = 86/230 (37%), Gaps = 22/230 (9%)
Query: 117 LAASGGYVNIIKLLLTHGAEINSR---TGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN 173
+ +S + + L+ G+ + S G G P G LL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55
Query: 174 AQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
A + + + A G + L+ + V ++PL EA GG++ ++LL
Sbjct: 56 A---VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 234 DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
GA VN T L A G V LLL GA V+ ++ SP+ AA
Sbjct: 113 KHGAQVNG------VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAA 165
Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
GH+ V L +G +ID + + + L A V+ ++ A
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 268 bits (688), Expect = 4e-86
Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 27/291 (9%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
+ LI A +V LL A++ Q E TPL A R ++VELLL
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
GA+ R + TP LAA G V ++KL L+ GA++N G + M AA+ G
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD--FYGFTAFMEAAVYGKVK 119
Query: 161 AVKLLLDMGSDINAQIETNRN---------TALTLACFQGRHEVVSLLLDRK-ANVEHRA 210
A+K L G+++N + +T + TAL A +G EV+ +LLD A+V
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179
Query: 211 KTGLTPLMEAASGG----YVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCR 262
G L+ A + +LLD GADVN R T L +A +K H
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------RGERGKTPLILAVEKKHLG 233
Query: 263 FVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
V+ LL + ++ + G + L LA + ELLCK GA D D
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 210 bits (538), Expect = 5e-64
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 20/243 (8%)
Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
A E D L A V++++ LL GA +N + + G +PL A
Sbjct: 1 AAVE-----DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDI 54
Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
V+LLL G+D + + N T LA G +++ L L + A+V G T MEAA
Sbjct: 55 VELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Query: 222 SGGYVEVGRVLLDKGADVNA--------PPVPSSRDTALTIAADKGHCRFVELLLSK-GA 272
G V+ + L +GA+VN + TAL AA+KGH +++LL + GA
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 273 QVEVKNKKGNSPLWLAANGGHLS----VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
V + G + L A S + LL HGAD++ + R + L+ A K H+
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233
Query: 329 AVR 331
V+
Sbjct: 234 LVQ 236
Score = 179 bits (456), Expect = 4e-52
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
+ L+ A N V+ LL+ G+++N Q E T L A R ++V LLL
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
A+ R K G TP + AA G V++ ++ L KGADVN D TA AA
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE------CDFYGFTAFMEAAV 114
Query: 258 KGHCRFVELLLSKGAQVEVKNK----------KGNSPLWLAANGGHLSVVELLCKH-GAD 306
G + ++ L +GA V ++ K G + L AA GH+ V+++L GAD
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 307 IDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
+++ DN + L+ A V +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAIT 202
Score = 88.3 bits (220), Expect = 1e-19
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKK-GNSPLWLAANGGHLSVVELLCKHGADI 307
+ L A V+ LL GA V + ++ G +PL A +VELL +HGAD
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 308 DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ + + A G VK ++ ++ A
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Score = 78.7 bits (195), Expect = 3e-16
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 13 TALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L LA H LV+ LL + +I D G T L+LA K+ ++L A +
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Query: 72 AQ 73
Sbjct: 281 CG 282
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 270 bits (694), Expect = 7e-86
Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 41/355 (11%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + N + +A G + V L+ G +++ G T L LA G
Sbjct: 12 NRIKSDDENM-EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK 70
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
L + + P+ LA + ++V L+ + P SL
Sbjct: 71 YLASVGEVHSLWHGQ---KPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNEC 121
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLDMGSDINAQIETN 179
+ ++ + + G + L G + +K+L+ +G+ A+ +
Sbjct: 122 DEREVNEIG------SHVKH--CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-A 172
Query: 180 RNTALTLACFQGRHEVVSLLLDRK-----ANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
T L A E + L++D +++ K G + L A + +V ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN-------------KKG 281
G DVN + L ++ + LL K ++
Sbjct: 233 MGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290
Query: 282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ AA+ V++LL + ++ N + +K R +
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345
Score = 265 bits (679), Expect = 1e-83
Identities = 64/338 (18%), Positives = 108/338 (31%), Gaps = 37/338 (10%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ TAL LAC G + + L S G G P+ LA A +V
Sbjct: 45 SPTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVV 101
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
L+ + P SL EV E+ G++ +H T L
Sbjct: 102 ALVEGAKERGQ-------MPESLLNECDEREVNEI----GSHVKHCK--GQTALHWCVGL 148
Query: 122 G--YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM-----GSDINA 174
G Y+ +IK+L+ GA ++ K +PLM A + A+ L++D ++
Sbjct: 149 GPEYLEMIKILVQLGASPTAKD--KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+ N+ L A +V ++ +V PL + V + + LL
Sbjct: 207 ANK-QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265
Query: 235 KGADVNAPPVP-----------SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
K P + AAD ++LL K +V G
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAG 325
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
+V + A + ++ + +
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 239 bits (612), Expect = 8e-74
Identities = 49/330 (14%), Positives = 100/330 (30%), Gaps = 44/330 (13%)
Query: 29 LLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG 88
+ + D + + +AA G V L+ Q+ T L LAC
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF-GCTALHLACKF 63
Query: 89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
G + + L + G + P+ LA +++ L+ E G
Sbjct: 64 GCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKER--------GQM 113
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG--RHEVVSLLLDRKANV 206
P L ++ + + TAL G E++ +L+ A+
Sbjct: 114 PESLLNECDEREVNEI------GSHVK-HCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLD-----KGADVNAPPVPSSRD--TALTIAADKG 259
+ K TPLM A E +++D ++ ++ + L A
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA----NKQGNSHLHWAILIN 222
Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ--------- 310
+ G V +++ + PL+L+ + + + L + Q
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282
Query: 311 ----DNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ + AA + ++ +
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312
Score = 225 bits (576), Expect = 2e-68
Identities = 60/306 (19%), Positives = 104/306 (33%), Gaps = 35/306 (11%)
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+ K + + + +A G+ + V L+ G + +N T L LA
Sbjct: 5 MTDFPKLNRIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
G V+ K L + G + G P+ LA M T V L++ +
Sbjct: 64 GCVDTAKYLASVGEVHSLWHGQ----KPIHLAVMANKTDLVVALVEGAKERG-------Q 112
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG--YVEVGRVLLDKGADV 239
+L EV + + G T L G Y+E+ ++L+ GA
Sbjct: 113 MPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166
Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLL-----SKGAQVEVKNKKGNSPLWLAAN 290
A +D T L A + + ++L++ +++ NK+GNS L A
Sbjct: 167 TA------KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYI 350
V + G D++ +DN L + R V + ++ F
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280
Query: 351 QTVNDK 356
TV
Sbjct: 281 TTVLPD 286
Score = 108 bits (273), Expect = 6e-26
Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 18/143 (12%)
Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TAL 252
S+ K N + + AA G + R L++ G ++ TAL
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI------QNRFGCTAL 57
Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
+A G + L S G + + G P+ LA +V L + +
Sbjct: 58 HLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQ--- 112
Query: 313 RKVSCLMAAFRKGHVKAVRWMVN 335
+ +
Sbjct: 113 ---MPESLLNECDEREVNEIGSH 132
Score = 93.0 bits (232), Expect = 1e-20
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 4/110 (3%)
Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
G + + + +AA KG V L+ G ++N+ G + L LA
Sbjct: 3 GSMTDFPKLNRIK--SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60
Query: 289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
G + + L G + + A V +V
Sbjct: 61 CKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAK 108
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 260 bits (666), Expect = 3e-83
Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 9/260 (3%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+P+ A G + L+++G +PL A GG+++ +K+LL HGA++N
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
T +PL A ++G V LLL G+ + E++ + + A +G E V+ L
Sbjct: 65 VT--ADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSL 120
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
+ N++H+ TPL A + LL+ GADVN +D+ L A
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG---KGQDSPLHAVARTA 177
Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLM 319
LL+ GA + KN +G P+ L + +L + ++
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRK 235
Query: 320 AAFRKGHVKAVRWMVNHVAQ 339
+ H K + ++ +
Sbjct: 236 CFGIQQHHKITKLVLPEDLK 255
Score = 259 bits (664), Expect = 6e-83
Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
++P+ AA GH + L++ + + +PL AC GG V++LL GA
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
+TPL A G + + LLL HGA + SP+ AA GH V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE---SDLASPIHEAARRGHVECVN 118
Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223
L+ G +I+ +I + T L LAC + V LL+ A+V + K +PL A
Sbjct: 119 SLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVART 176
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNK 279
E+ +L+D GAD A ++ + + + +L L + +
Sbjct: 177 ASEELACLLMDFGADTQA------KNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQL 228
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGA 305
H + +L+
Sbjct: 229 CRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 258 bits (662), Expect = 1e-82
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 14/263 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ + A GH+ + L+S+G + +PL A GH V ILL H A +
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
T D TPL AC G ++ V LLL GA+ + + +P+ AA G+V + L
Sbjct: 65 ---VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 120
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
+ +G I+ + +PL LA N A VK LL+ G+D+N +++ L
Sbjct: 121 IAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVART 176
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
E+ LL+D A+ + + G P+ + ++ L++ + + R
Sbjct: 177 ASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL--MQLCRLR 232
Query: 251 ALTIAADKGHCRFVELLLSKGAQ 273
+ H + +L+L + +
Sbjct: 233 IRKCFGIQQHHKITKLVLPEDLK 255
Score = 237 bits (607), Expect = 2e-74
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 9/236 (3%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
V+ T +H + L AC GGH V++LL GA + TPL A +G V+
Sbjct: 28 AVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN 86
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL H A ++ +S+ +P+ A G E V L+ G N +H+ TPL LA
Sbjct: 87 LLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
+K LL GA++N K SPL A LL+D G+D A+
Sbjct: 145 QQRACVKKLLESGADVNQ---GKGQDSPLHAVARTASEELACLLMDFGADTQAK-NAEGK 200
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ L + + L L+R+ L + ++ +++L +
Sbjct: 201 RPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 218 bits (559), Expect = 2e-67
Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 15/223 (6%)
Query: 109 VSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
+SD++P+ AA G+ ++ L++ G +N T +SPL A + GH + VK+LL
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT--ADHVSPLHEACLGGHLSCVKILLKH 58
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
G+ +N + +T L AC G + V+LLL A+V+ +P+ EAA G+VE
Sbjct: 59 GAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVEC 116
Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
L+ G +++ + T L +A + V+ LL GA V + K +SP
Sbjct: 117 VNSLIAYGGNIDH------KISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSP 169
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
L A + LL GAD +++ + + +
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 212
Score = 192 bits (491), Expect = 2e-57
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
SP+ AA++GH +++ L+ G +N + + L AC G V +LL A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
V TPL A G + +LL GA V S + + AA +GH V
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE---SDLASPIHEAARRGHVECVN 118
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG 325
L++ G ++ K +PL+LA + V+ L + GAD++ Q + S L A R
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTA 177
Query: 326 HVKAVRWMVNHVA 338
+ +++ A
Sbjct: 178 SEELACLLMDFGA 190
Score = 128 bits (324), Expect = 9e-34
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
+ +P+ EAA G+ R L+ +G VN + + + L A GH V++LL G
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILLKHG 59
Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
AQV ++PL+ A G V LL +HGA + + + S + A R+GHV+ V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAARRGHVECVN 118
Query: 332 WMVNH 336
++ +
Sbjct: 119 SLIAY 123
Score = 102 bits (258), Expect = 9e-25
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
D+ L EEL LL+ GAD + ++ +G P+ L + + L +
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREGP 222
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
+ +++ +L+L +
Sbjct: 223 PSLMQLC-RLRIRKCFGIQQHHKITKLVLPEDLKQ 256
Score = 56.3 bits (137), Expect = 5e-09
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
SP+ AA GH + L G ++ VS L A GH+ V+ ++ H AQ
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 253 bits (648), Expect = 6e-80
Identities = 71/308 (23%), Positives = 116/308 (37%), Gaps = 25/308 (8%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
L G E +E + + + + G + A ++G + V LL AD+
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINY 68
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
D T L AC ++V+ L+ GAN + + PL AAS GY++I + L
Sbjct: 69 A---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
++ GA + + G +PL +A ++ ++ + A
Sbjct: 126 ISQGAHVGAVN--SEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERI 176
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD- 249
+ L N AK+G T L AA+ GY EV ++L+ DVN +D
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI------KDY 230
Query: 250 ---TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
T L AA G +L+ +E NK G + +A + EL K
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Query: 307 IDSQDNRK 314
+ +K
Sbjct: 291 HSEKREKK 298
Score = 233 bits (598), Expect = 2e-72
Identities = 64/290 (22%), Positives = 115/290 (39%), Gaps = 13/290 (4%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
++ D K L G + ++ + + + + + ACS G E V
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLR 58
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
LL RGA+ + NV T L A V+++K L+ +GA IN G PL AA
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD--NEGWIPLHAAASC 116
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
G+ + L+ G+ + A + +T L +A + E++ ++R+
Sbjct: 117 GYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAA 169
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
E + + L + S TAL +AA KG+ ++LL+ V +
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHA--KSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
K+ G +PL AA+ G +L ++ D+++ + + A
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Score = 130 bits (329), Expect = 5e-34
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 11/161 (6%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ L + G + + ++ + + G + A S G E LL++GAD
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGAD 65
Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
+N + TAL A + V+ L+ GA + + +G PL AA+ G+L
Sbjct: 66 INY------ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+ E L GA + + ++ + L A + + ++ VN
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 255 bits (654), Expect = 7e-80
Identities = 64/333 (19%), Positives = 122/333 (36%), Gaps = 39/333 (11%)
Query: 3 VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
+E + G++ L + + + + L A AG + +
Sbjct: 53 QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEP 111
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLT--------RGANKEHRNVSDYTP 114
+ ++ T L S E E L+ GA+ + + TP
Sbjct: 112 ITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169
Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD---MGSD 171
L LA ++ L+ GA+ K S L AA N + +L+ + D
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYN--KSERSALHQAAANRDFGMMVYMLNSTKLKGD 227
Query: 172 INAQIETNRNTALTLACFQGRHEVVS---LLLDRKANVEHRA--------KTGLTPLMEA 220
I + N TAL + + V+ LL+++ A V++ G T L A
Sbjct: 228 IEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 221 ASGGYVEVGRVLL-DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVE 275
A + + + L+ +KG++ + +D T + +AA +G V L+ +GA VE
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340
Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
+ ++ LA H ++V++ + + +
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 209 bits (534), Expect = 3e-62
Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 48/332 (14%)
Query: 32 SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
+ L+ A+ G+ K L H + P G
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL----------YPNPQGYGNGND 74
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
+ + T L A+ G I + + I + + L
Sbjct: 75 FLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID---PRHNRTVLH 130
Query: 152 LAAMNGHTAAVKLLL--------DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203
A N + L+ G+D+NA + + NT L LA R +V+ L+
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKAG 189
Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK---GADVNAPPVPSSRD----TALTIAA 256
A+ K+ + L +AA+ + +L+ D+ D TAL I A
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE------LDRNGMTALMIVA 243
Query: 257 DKGH---CRFVELLLSKGAQV--------EVKNKKGNSPLWLAANGGHLSVVELLCKH-G 304
+LL+ KGA+V + + KG + L AA ++ +V+ L G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303
Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
++ D QD + +M A ++G ++ V +++
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335
Score = 136 bits (345), Expect = 1e-35
Identities = 33/201 (16%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
L+ A+ +G+ + L G +
Sbjct: 37 SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
L A+G + + + ++ P T L A E
Sbjct: 87 PTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDP---RHNRTVLHWIASNSSAEKSE 142
Query: 266 LLL--------SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSC 317
L+ + GA V + N+PL LA +V L K GAD + + S
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202
Query: 318 LMAAFRKGHVKAVRWMVNHVA 338
L A + +M+N
Sbjct: 203 LHQAAANRDFGMMVYMLNSTK 223
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 243 bits (623), Expect = 2e-76
Identities = 42/298 (14%), Positives = 88/298 (29%), Gaps = 19/298 (6%)
Query: 17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
+ ++ LS D D G + A + ++V LLN A
Sbjct: 5 SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--- 60
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
+ PL A + ++V++LL G + + T L A G + +KL +
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 137 INSRTGSKLGIS-PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
+ K G A M + V L + + + G ++
Sbjct: 121 LMFYG--KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDM 176
Query: 196 VSLLLDRKANVEHRAKTGLTP-LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI 254
+ LLLD + P + A +E+ + L ++ +A
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY---------SANLE 227
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
++++ K + + + + + + + + N
Sbjct: 228 NVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
Score = 213 bits (546), Expect = 4e-65
Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 23/282 (8%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D H +A A A + LV LL+ GA + PL AAT K+V
Sbjct: 23 DTFKADVHGH-SASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVK 79
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAAS 120
ILL D ++ +T L A G + V+L + + + + T A
Sbjct: 80 ILLFSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138
Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
V+I+ L+ + +S + + NGH + LLLD + N
Sbjct: 139 LNDVSIVSYFLSEIPSTFDL---AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+ LA E++ L N+ + +E E+ +++++K +
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYK 248
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
+ ++D + ++SK ++ +
Sbjct: 249 S--DSYTKDLDIVKNNKLDE------IISKNKELRLMYVNCV 282
Score = 190 bits (484), Expect = 4e-56
Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 19/226 (8%)
Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
+ +K L + G S A + + V LL+ G+ N
Sbjct: 5 SRINTWKSKQLKSFL-SSKDTFKAD--VHGHSASYYAIADNNVRLVCTLLNAGALKNLL- 60
Query: 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG 236
L A ++V +LL + G T L A G ++ ++ + K
Sbjct: 61 --ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118
Query: 237 ADVNAPPVPSSRD-----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291
+ T+ A V LS+ S + +
Sbjct: 119 WRLMF------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKN 171
Query: 292 GHLSVVELLCKHGADIDSQDNR-KVSCLMAAFRKGHVKAVRWMVNH 336
GH+ ++ LL + ++ ++ + + A ++ ++ + +
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217
Score = 138 bits (351), Expect = 3e-37
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 6/154 (3%)
Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245
+ + + L + G + A + V + LL+ GA N
Sbjct: 5 SRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---- 59
Query: 246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
+ L AA + V++LL G + KGN+ L+ A + G++ V+L K
Sbjct: 60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 306 DIDSQDNR-KVSCLMAAFRKGHVKAVRWMVNHVA 338
+ + A V V + ++ +
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 239 bits (613), Expect = 1e-75
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 3/230 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ A G E L+ G D+ DK+ T L AA +V ++ A ++
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
TPL A G +V L+ GA+ + + + LAA G+ +I+ L+
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTA-AVKLLLDMGSDINAQIETNRNTALTLACFQG 191
G +++ + G++PLM AA H+ +LLL +N + ++NTAL A G
Sbjct: 131 KGQDVDMMD--QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
V+SLLL+ ANV+ + G + L A V + L +
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 230 bits (590), Expect = 3e-72
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 5/234 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+ A G YE L+ G + + + T L AA ++++K ++ GA ++
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
G L +PL A GH + V L+ G+D + + + + LA G +V+ L
Sbjct: 71 L-GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYL 128
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGY-VEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
+ + +V+ + G+TPLM AA + V+ R+LL VN ++TAL A
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLA 187
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
G+ + LLL GA V+ +N KG S L LA ++ ++ L + DN
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240
Score = 212 bits (543), Expect = 3e-65
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 14/242 (5%)
Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
+ H + + A G + L+ G ++ K ++ L AA+N V
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD--KENVTLLHWAAINNRIDLV 58
Query: 163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS 222
K + G+ ++ +T L A QG +V L+ A+ G + + AA
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 223 GGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCR-FVELLLSKGAQVEVK 277
G+ + L+ KG DV+ D T L AA + H LLL+ V +
Sbjct: 119 FGHTSIVAYLIAKGQDVDM------MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 278 NKK-GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+K N+ L A G+ +V+ LL + GA++D+Q+ + S L A ++ +V + +
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 337 VA 338
Sbjct: 233 RQ 234
Score = 166 bits (424), Expect = 5e-48
Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 5/175 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
VD + T L A GH +V L+ GAD D +G + + LAA GH +V
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 62 ILLNHKADMEAQSERTKDTPLSLACS-GGRYEVVELLLTRGANKEHRNVSD-YTPLSLAA 119
L+ D++ + TPL A + LLLT + + T L A
Sbjct: 127 YLIAKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185
Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
G +I LLL GA ++++ G S L LA + + L +
Sbjct: 186 LAGNTTVISLLLEAGANVDAQN--IKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Score = 37.0 bits (87), Expect = 0.010
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRD 41
+AL LA + ++ L + +
Sbjct: 212 SALDLAKQRKNVWMINHLQEARQAKGYDN 240
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 239 bits (612), Expect = 8e-75
Identities = 62/287 (21%), Positives = 88/287 (30%), Gaps = 26/287 (9%)
Query: 37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRYEVV 94
+ + G T L LA H+ +D LL A E + T L LA G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 95 ELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP----- 149
E L GA +T L LA +LL
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 150 -------LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
+ + N D + A+ + +T L +A E+V LL D
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDA 180
Query: 203 KANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
A++ T G TPL A V +LL GAD A R T L A
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------RMYGGRTPLGSALL 234
Query: 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
+ + LL + GA SP + + + ++
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 170 bits (433), Expect = 7e-49
Identities = 45/228 (19%), Positives = 67/228 (29%), Gaps = 25/228 (10%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
V E TAL LAC +LL + T
Sbjct: 70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT-------- 120
Query: 62 ILLNHKADMEAQSERTKDTPLSLACS-GGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
T P ++ E E N +TPL +A
Sbjct: 121 -------------PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167
Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
+++LL GA++N G +PL LA + ++LLL G+D A+
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEP-TCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGG 225
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
T L A + + LL A L+P + S +
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273
Score = 161 bits (409), Expect = 2e-45
Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 2/164 (1%)
Query: 4 DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
D +++H A + E +E + G TPL +A ++V +L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177
Query: 64 LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
+ AD+ TPL LA V+ELLL GA+ R TPL A
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ +LL HGA +SP + + + +
Sbjct: 238 PILARLLRAHGAPEPEDG--GDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 101 bits (253), Expect = 6e-24
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D++ + T L LA ++ELLL GAD R G TPL A + +
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLL 98
+L H A D +P S + S + +
Sbjct: 243 LLRAHGAPEPE---DGGDKLSPCSSSGSDSDSDNRDEGD 278
Score = 86.8 bits (216), Expect = 4e-19
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 250 TALTIAADKGHCRFVELLLSKGA---QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
TAL +A H F++ LL A ++++N G + L LAA G S VE L GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 307 IDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ + + L A R ++
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Score = 54.1 bits (131), Expect = 4e-08
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD---IDSQDNRKVSCLMAAFRKGHVKAV 330
+ G++ L LA H ++ L A +D Q++ + L A G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 331 RWMVNH 336
+
Sbjct: 62 EKLYAA 67
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 230 bits (589), Expect = 4e-72
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 6/228 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+PL A G ++ +L+ GAN + + TPL AA ++ +K L+ GA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSL 198
+ G + L LAA GH V+ LL G D+N Q + T + A ++V L
Sbjct: 73 KD--AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKL 129
Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
LL + +++ R L AA G V++ +LL D++A V D+ L IAA +
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARE 187
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
V L LS+ + V +KNK+G +PL A+ + + K D
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 223 bits (570), Expect = 2e-69
Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 10/240 (4%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ E ++ + L A GH ++ +L+ GA+I+ + TPL+ AA H + V
Sbjct: 3 NFKMEHQNKR-SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLA 118
L+ A ++ + + T L LA G YEVV+ LL+ G + ++ +TP+ A
Sbjct: 62 YLIKAGALVDP---KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
+V+++KLLL+ G++IN R L AA +G ++LL D++A
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NI 175
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ ++ L +A + R++ V L L R ++V + K G TPL A+ V + D
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 213 bits (546), Expect = 1e-65
Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 14/242 (5%)
Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
N + + + +PL AA G+V+I +L+ GA I++ + + +PLM AA N H A
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS--EDQRTPLMEAAENNHLEA 59
Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEA 220
VK L+ G+ ++ + + +T L LA +G +EVV LL +V + G TP++ A
Sbjct: 60 VKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
+V++ ++LL KG+D+N RD L AA G E+LL+ +
Sbjct: 119 TEYKHVDLVKLLLSKGSDINI------RDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
N G+SPL +AA V L +D+ ++ + L A V + M
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232
Query: 337 VA 338
+
Sbjct: 233 LQ 234
Score = 96.3 bits (241), Expect = 8e-23
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
+ L AA+ GH +L+ GA ++ ++ +PL AA HL V+ L K GA +D
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+D +CL A +KGH + V++++++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 219 bits (560), Expect = 1e-67
Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 36/278 (12%)
Query: 36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
D+ R GFTPL++A+ +G + V+
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVIS 40
Query: 96 LLLTRGANKE-HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA 154
+ +GA+ + + T L LAA + K LL A+ N + +G +PL A
Sbjct: 41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--NMGRTPLHAAV 98
Query: 155 MNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
++L+ +D++A+ + T L LA ++ L++ A+V G
Sbjct: 99 SADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLS 269
+ L AA+ V+ VLL GA+ + ++ T L +AA +G ++LL
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYETAKVLLD 211
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
A ++ + P +A H +V LL
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 205 bits (524), Expect = 2e-62
Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 6/233 (2%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIE-HRDKKGFTPLILAATAGHDKVVDILLNHKA 68
++ + +GA + D+ G T L LAA LL A
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNII 127
D Q + TPL A S V ++L+ A + + R TPL LAA ++
Sbjct: 82 DANIQDNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA 187
+ L+ A++N+ LG S L AA + A +LL G++ + Q T L LA
Sbjct: 141 EDLINSHADVNAVD--DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLA 197
Query: 188 CFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+G +E +LLD AN + P A + ++ R+L + +
Sbjct: 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 183 bits (468), Expect = 4e-54
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 9/207 (4%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ ++T+ +TAL LA + + LL AD +D G TPL A +A V
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 62 ILLNHKA-DMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
IL+ ++A D++A R D TPL LA ++E L+ A+ + + L A
Sbjct: 108 ILIRNRATDLDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
A+ V+ +LL +GA + + +PL LAA G K+LLD ++ +
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDITDH- 221
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKAN 205
+A + H++V LL +
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDLEHHH 248
Score = 157 bits (400), Expect = 2e-44
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Query: 13 TALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
T L A + + + ++L+ A D++ R G TPLILAA + +++ L+N AD+
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
A + K + L A + + +LL GANK+ +N + TPL LAA G K+LL
Sbjct: 152 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
H A + + P +A H V+LL +
Sbjct: 211 DHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 99.8 bits (250), Expect = 7e-24
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+AL A A + + +LL GA+ + ++ + TPL LAA G + +LL+H A+ +
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
+ P +A +++V LL + H +
Sbjct: 219 TDHMDR-LPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
Score = 86.4 bits (215), Expect = 3e-19
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
+V R G TPLM A+ G ++ +
Sbjct: 2 DVNVRGPDGFTPLMIASCSG----------------------GGLETGNSEEEEDAPAVI 39
Query: 265 ELLLSKGAQVE-VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
+ +GA + ++ G + L LAA + L + AD + QDN + L AA
Sbjct: 40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 324 KGHVKAVRWMVNHVA 338
+ ++ + A
Sbjct: 100 ADAQGVFQILIRNRA 114
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 212 bits (543), Expect = 3e-65
Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 46/273 (16%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLN----HKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
D+ G TPL +A G+ V L+N +++ + + TPL LA VV L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRL 64
Query: 97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE----INSRTGSKLGISPLML 152
L+T GA+ + T LA ++ LL A + +R G++ L +
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHV 122
Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
A V+LLL+ G+DI+A + + L A +V LLL ANV + +
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G + L A+ G + + V L+ GA
Sbjct: 183 GSSALHSASGRGLLPL-----------------------------------VRTLVRSGA 207
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
+KN ++PL +A + + ++ A
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 210 bits (538), Expect = 2e-64
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 15/236 (6%)
Query: 12 DTALTLACAGGHEELVELLLSR----GADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
DT L +A G+ V L++ G +++ + TPL LA VV +L+
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 68 ADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA----NKEHRNVSDYTPLSLAASG 121
A A + T LAC + LL A + E RN T L +A +
Sbjct: 70 ASPMA---LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
++LLL GA+I++ K G SPL+ A N + V+LLL G+++NAQ+ + +
Sbjct: 127 ECQETVQLLLERGADIDAVD-IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGS 184
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+AL A +G +V L+ A+ + TPLM A S +++ R + A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 200 bits (511), Expect = 1e-60
Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 12/233 (5%)
Query: 112 YTPLSLAASGGYVNIIKLLL----THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
TPL +A G + + L+ G E++ L +PL LA + + V+LL+
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN--NLRQTPLHLAVITTLPSVVRLLVT 67
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA----NVEHRAKTGLTPLMEAASG 223
G+ A + TA LAC + LLD A ++E R GLT L A +
Sbjct: 68 AGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
E ++LL++GAD++A + S R + L A + V+LLL GA V + G+S
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
L A+ G L +V L + GAD ++ + LM A + + +R
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 190 bits (486), Expect = 5e-57
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
++D + T L LA +V LL++ GA D+ G T LA +
Sbjct: 38 ELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 96
Query: 62 ILLNHKADMEAQ-SERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSL 117
LL+ A R D T L +A + E V+LLL RGA+ + ++ +PL
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
A +++++LLL HGA +N++ G S L A+ G V+ L+ G+D + +
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQM--YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKAN 205
+ +T L +A + +++ R A+
Sbjct: 215 -HNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 107 bits (271), Expect = 1e-26
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 10/136 (7%)
Query: 211 KTGLTPLMEAASGGYVEVGRVLLD----KGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
+ G TPL A G + L++ G +++ + R T L +A V L
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRL 64
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA----DIDSQDNRKVSCLMAAF 322
L++ GA ++ G + LA + + L A D+++++ ++ L A
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 323 RKGHVKAVRWMVNHVA 338
+ V+ ++ A
Sbjct: 125 NTECQETVQLLLERGA 140
Score = 88.7 bits (221), Expect = 5e-20
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 249 DTALTIAADKGHCRFVELLLS----KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
DT L IA +G+ V L++ G ++++ N +PL LA SVV LL G
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD 343
A + D + A +R +++ A D
Sbjct: 70 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 206 bits (528), Expect = 3e-63
Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 6/224 (2%)
Query: 21 GGHEELVELLLSRGADIE-HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD 79
G ++ + +GA + D+ G T L LAA LL AD Q
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN-MGR 59
Query: 80 TPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
TPL A S V ++L+ A + + R TPL LAA +++ L+ A++N
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
+ LG S L AA + A +LL G++ + Q T L LA +G +E +
Sbjct: 120 AVD--DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKV 176
Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP 242
LLD AN + P A + ++ R+L + +
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
Score = 201 bits (515), Expect = 2e-61
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 15/231 (6%)
Query: 88 GGRYEVVELLLTRGANKE-HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
G V+ + +GA+ + + T L LAA + K LL A+ N + +G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--NMG 58
Query: 147 ISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
+PL A ++L+ +D++A+ + T L LA ++ L++ A+
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
V G + L AA+ V+ VLL GA+ + ++ T L +AA +G
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSY 171
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
++LL A ++ + P +A H +V LL ++ Q +
Sbjct: 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222
Score = 186 bits (475), Expect = 1e-55
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 9/209 (4%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ ++T+ +TAL LA + + LL AD +D G TPL A +A V
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75
Query: 62 ILLNHKA-DMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
IL+ ++A D++A R D TPL LA ++E L+ A+ + + L A
Sbjct: 76 ILIRNRATDLDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132
Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
A+ V+ +LL +GA + + +PL LAA G K+LLD ++ +
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDITDH- 189
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVE 207
+A + H++V LL +
Sbjct: 190 MDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Score = 183 bits (468), Expect = 1e-54
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 13/221 (5%)
Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
G +I + GA ++++T + G + L LAA + A K LL+ +D N Q +
Sbjct: 1 GDAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMG 58
Query: 181 NTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
T L A V +L+ +A +++ R G TPL+ AA + L++ ADV
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
NA D +AL AA + +LL GA +++N + +PL+LAA G
Sbjct: 119 NA------VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
++L H A+ D D+ A + H VR + +
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213
Score = 123 bits (311), Expect = 2e-32
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 191 GRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
V+S + + A++ ++ +TG T L AA + + LL+ AD N +D
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI------QD 55
Query: 250 ----TALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
T L A ++L+ A ++ + G +PL LAA ++E L
Sbjct: 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115
Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
AD+++ D+ S L A +V A ++ + A
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 201 bits (515), Expect = 2e-61
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 10/222 (4%)
Query: 13 TALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
L AC ++ ELL S+ + + +D+ G PL + + ++ LL+ ++
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 72 AQSERTKD--TPLSLACSGGRYEVVELLLTR--GANKEHRNVSDYTPLSLAASGGYVNII 127
TP +ACS G EVV+ L R + T L LA + +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTL 186
+ L+ +GA + + K PL AA G ++LL +G S +N Q + T L
Sbjct: 124 QFLIENGASVRIKD--KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFH 180
Query: 187 ACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVE 227
A +G + LL+++ A + G A + +
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222
Score = 193 bits (493), Expect = 3e-58
Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 19/227 (8%)
Query: 113 TPLSLAASGGYVNII-KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
PL A + +LL + + + + + G PL + LL +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKD--QDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 172 INAQIETNRN--TALTLACFQGRHEVVSLLLDR--KANVEHRAKTGLTPLMEAASGGYVE 227
+N + + T +AC G EVV L DR K ++ G+T L A + E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 228 VGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKG-AQVEVKNKKGN 282
V + L++ GA V +D L AA G + +ELL G + V ++K+G
Sbjct: 122 VSQFLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175
Query: 283 SPLWLAANGGHLSVVELL-CKHGADIDSQDNRKVSCLMAAFRKGHVK 328
+PL+ A GH LL K+GA+ D DN+ A + K
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222
Score = 189 bits (482), Expect = 1e-56
Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 52/269 (19%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
PL A +V ELL ++ +
Sbjct: 2 SNYPLHQACMENEFF---------------------------------KVQELLHSKPSL 28
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR-TGSKLGISPLMLAAMNGHTAAV 162
++ PL + S I LL+ +N G +P +A G+ V
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV 88
Query: 163 KLLLD--MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
K L D + D+N T L LA + EV L++ A+V + K PL A
Sbjct: 89 KSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147
Query: 221 ASGGYVEVGRVLLDKG-ADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK-GAQV 274
AS G +++ +L G + VN +D T L A +GH LL+ K GA+
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNW------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Query: 275 EVKNKKGNSPLWLAANGGHLSVVELLCKH 303
++ + KG +A + V + +
Sbjct: 202 DLVDNKGAKAEDVAL---NEQVKKFFLNN 227
Score = 142 bits (360), Expect = 5e-39
Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 4/160 (2%)
Query: 181 NTALTLACFQGRH-EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
N L AC + +V LL + + + + + G PL + S E+ LL K +V
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 240 NAPPVPS-SRDTALTIAADKGHCRFVELLLSK--GAQVEVKNKKGNSPLWLAANGGHLSV 296
N P S T IA G+ V+ L + + +G + L LA V
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ L ++GA + +D L A G +K + +
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Score = 114 bits (288), Expect = 3e-29
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH-KADME 71
T L LA E+ + L+ GA + +DK PL AA+ G K++++L K+ +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
Query: 72 AQSERTKD--TPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIK 128
Q K TPL A + G + LL+ + GA + + +A + + K
Sbjct: 169 WQ---DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKK 222
Query: 129 LLLTH 133
L +
Sbjct: 223 FFLNN 227
Score = 103 bits (260), Expect = 3e-25
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 213 GLTPLMEAAS-GGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELL 267
PL +A + +V +L K + + +D L + L
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ------KDQDGRIPLHWSVSFQAHEITSFL 55
Query: 268 LSKGAQVEVKNKK---GNSPLWLAANGGHLSVVELLCKH--GADIDSQDNRKVSCLMAAF 322
LSK V + + G +P +A + G+L VV+ L D++ N+ V+CL A
Sbjct: 56 LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115
Query: 323 RKGHVKAVRWMVNHVA 338
K + ++++ + A
Sbjct: 116 GKKWFEVSQFLIENGA 131
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 190 bits (486), Expect = 7e-58
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
+ ++ A G + + + I H D++GFTPL+ AA G VV+ LL + AD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 70 MEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
+ K + LSLACS G ++V++LL G + + + TPL A G +V +
Sbjct: 62 PQLL---GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118
Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
K+LL GA+ T G + + LA G+ + +++ + I
Sbjct: 119 KMLLESGADPTIET--DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 183 bits (468), Expect = 2e-55
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
+ A G + ++ + IN + T L A G+ VV LL A+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
+ K + L A S GY ++ ++LLD G DVN D T L A H
Sbjct: 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHV 115
Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
+ V++LL GA ++ G + + LA G+ SV +++ H +
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 174 bits (443), Expect = 1e-51
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
+ A+ G + + + IN + G +PLM AA +G A V+ LL G+D
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTD--EEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
+ R +AL+LAC +G ++V +LLD +V G TPL+ A G +V+ ++L
Sbjct: 63 QLLGK-GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 233 LDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
L+ GAD + ++ +A G+ +++ S ++ K+
Sbjct: 122 LESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 164 bits (418), Expect = 4e-48
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ ++ QG ++ ++++ + H + G TPLM AA+ G + V LL GAD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
+ R++AL++A KG+ V++LL G V + G +PL A +G H+ V+
Sbjct: 62 PQL--LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 299 LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+L + GAD + + + + A G+ + + +H+
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159
Score = 87.8 bits (219), Expect = 2e-20
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+ E + N T L A G H + V++LL GAD G+ + LA G+ V
Sbjct: 94 DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Query: 62 ILLNHKADMEAQSERTKD 79
++ +H + K+
Sbjct: 153 VIESHLLKLLQN---IKE 167
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 190 bits (485), Expect = 9e-57
Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 24/249 (9%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ GH AD+ + TP AA ++ + LL D++A
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 72
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNIIKLLL 131
E + T L G + V LL GA+ +HR++ T L +AA +++ L+
Sbjct: 73 VDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
GA+I + G++ L LA T + G I + + +
Sbjct: 132 ELGADIEVED--ERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFE 185
Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA 251
EV ++ R G + V A+ A +
Sbjct: 186 YAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVA----KDYEDG 233
Query: 252 LTIAADKGH 260
L A +
Sbjct: 234 LEYAVAESV 242
Score = 188 bits (480), Expect = 5e-56
Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 41/284 (14%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
G I+ + + + G A+
Sbjct: 1 GEVNKIIGSRTAGEGA--------------------MEYLIEWKDGHSPSWVPSSYIAAD 40
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
TP AA + LL ++++ + G + L+ A G V+
Sbjct: 41 V---VSEYETPWWTAARKADEQALSQLL-EDRDVDAVD--ENGRTALLFVAGLGSDKCVR 94
Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223
LL + G+D++ + TAL +A R EVV L++ A++E + GLT L A
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
+ G + V + + E++ +G G
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKV-----INVLEGQVFEYAEVDEIVEKRGK--------GKD 201
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
+L + H A+ ++D L A + +
Sbjct: 202 VEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243
Score = 167 bits (424), Expect = 5e-48
Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 17/221 (7%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ S ++T A E+ + LL D++ D+ G T L+ A G DK V +L
Sbjct: 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
AD++ + R T L +A R EVVE L+ GA+ E + T L LA
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
+ G I + ++ + + +++ G
Sbjct: 159 PKGNPMQFGRRIGLE-----KVINVLEGQVFEYAEVDEIVEKRGKG---------KDVEY 204
Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
L ++ + + A AK L A + +
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDV--AKDYEDGLEYAVAESVI 243
Score = 156 bits (398), Expect = 3e-44
Identities = 49/252 (19%), Positives = 84/252 (33%), Gaps = 35/252 (13%)
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
EV +++ +R A + + G+ A++ S +P
Sbjct: 2 EVNKIIGSRTAGE------GAMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWW 50
Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR-A 210
AA A+ LL+ D++A + N TAL G + V LL + A+++HR
Sbjct: 51 TAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
+ GLT L AA EV L++ GAD+ D TAL +A +
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGN 162
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
+ G ++ + + + +I + + K
Sbjct: 163 PMQFGRRI---GLEKVINVLEGQVFEY--------AEVDEIVEKRGKGKDVEYLVRWKDG 211
Query: 327 VKAVRWMVNHVA 338
HVA
Sbjct: 212 GDCEWVKGVHVA 223
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 182 bits (465), Expect = 7e-55
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGAD-IEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
++ A G + ++ L +G + + D++GFTPLI A+ G + V LL AD
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 72 AQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
K+ + LSLA +GG ++V LLL R + + + TPL A G +V ++
Sbjct: 64 IL---AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
LL GA++ + G +P+ LA G+ +++ + +
Sbjct: 121 LLARGADLTTEA--DSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164
Score = 182 bits (465), Expect = 9e-55
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 3/173 (1%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
+ A G + L ++ + + TPL A + G E V LL GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
+ LSLA++GGY +I+ LLL +IN G +PL+ A H V+
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVRGNHVKCVE 119
Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
LL G+D+ + + + T + LA G +V ++ + + P
Sbjct: 120 ALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 180 bits (460), Expect = 5e-54
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSD-INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
+ A G +K L G + +N + T L A G E V LL+ A+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
AK + L A++GGY ++ +LL++ D+N D T L A H +
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINI------YDWNGGTPLLYAVRGNHVKC 117
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
VE LL++GA + + G +P+ LA G+ V +++ H + +
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166
Score = 177 bits (452), Expect = 6e-53
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 10/177 (5%)
Query: 111 DYTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
D + A+ G ++ +K L G +N + G +PL+ A+ G V+ LL+ G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP--DERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVG 229
+D + R +AL+LA G ++V LLL+R ++ G TPL+ A G +V+
Sbjct: 60 ADPHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118
Query: 230 RVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
LL +GAD+ + T + +A G+ + +++ + ++ N P
Sbjct: 119 EALLARGADLTT----EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 161 bits (409), Expect = 1e-46
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 3/159 (1%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADV 239
+ ++ QG + + L + N+ ++ + G TPL+ A++ G +E R LL+ GAD
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
+ + R++AL++A+ G+ V LLL + + + + G +PL A G H+ VE
Sbjct: 63 HI--LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
L GAD+ ++ + + + A G+ K + + NH+
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 154 bits (391), Expect = 4e-44
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 4 DSETESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + + T L A A G E V LL GAD K+ + L LA+T G+ +V
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL D+ TPL A G + VE LL RGA+ S YTP+ LA +
Sbjct: 87 LLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 122 GYVNIIKLLLTHGAEINSRT 141
GY + +++ H ++
Sbjct: 146 GYRKVQQVIENHILKLFQSN 165
Score = 125 bits (316), Expect = 1e-33
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D + ++AL+LA GG+ ++V LLL R DI D G TPL+ A H K V+
Sbjct: 61 DPHILAK-ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
LL AD+ + TP+ LA + G +V +++ N+ P
Sbjct: 120 ALLARGADLTTE---ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 52.4 bits (127), Expect = 3e-08
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 281 GNSPLWLAANGGHLSVVELLCKHGAD-IDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ + A G L ++ + G + ++ D R + L+ A G ++ VR+++
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 182 bits (465), Expect = 3e-54
Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 10/218 (4%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
+ A + L DI + T + G ++ +
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
+ D PL A G + L + + T L A GG+ +I+++
Sbjct: 71 ------ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124
Query: 130 LLTH-GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC 188
L T E+N + KLG + L AA G+ V+LLL G+ + + + A +A
Sbjct: 125 LFTQPNIELNQQN--KLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMAT 181
Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
++ A ++ +
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 182 bits (463), Expect = 6e-54
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 11/217 (5%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
+ A L +I T + + G T +
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
+ + L A +G + LD + V K G T L A GG+ ++ +
Sbjct: 71 ES------IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124
Query: 232 LLDK-GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
L + ++N DTAL AA KG+ V+LLL+KGA+ +++N + +A N
Sbjct: 125 LFTQPNIELNQ--QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
S+++ A + + + H
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 175 bits (445), Expect = 2e-51
Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 12/222 (5%)
Query: 40 RDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLT 99
K G + A + D L + D+ ++ DT S GR ++
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRTGLIP---- 62
Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
+ S PL AA G ++ ++ L + +N K G + L A GH
Sbjct: 63 -SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD--KAGSTALYWACHGGHK 119
Query: 160 AAVKLLLD-MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
V++L ++N Q + +TAL A ++G ++V LLL + A + R
Sbjct: 120 DIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 219 EAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
A + + + A + + + H
Sbjct: 179 MATNAACASLLKKKQGTDAVRTL--SNAEDYLDDEDSDLEHH 218
Score = 161 bits (409), Expect = 3e-46
Identities = 48/201 (23%), Positives = 73/201 (36%), Gaps = 17/201 (8%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
K G + A L DI + +T +GR ++
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLI-----P 62
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADK 258
V +A++ PL EAA G + R LD VN D TAL A
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------LDKAGSTALYWACHG 116
Query: 259 GHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSC 317
GH VE+L ++ ++ +NK G++ L AA G+ +V+LL GA D ++ K
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176
Query: 318 LMAAFRKGHVKAVRWMVNHVA 338
A ++ A
Sbjct: 177 FDMATNAACASLLKKKQGTDA 197
Score = 147 bits (373), Expect = 5e-41
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
E + D L A G+ + L + DK G T L A GH +V++L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
Query: 66 HK-ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
++ Q++ DT L A G ++V+LLL +GA + RN+ +A +
Sbjct: 128 QPNIELNQQNKL-GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA 186
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
+++K A + + + H
Sbjct: 187 SLLKKKQGTDAVRTLS--NAEDYLDDEDSDLEHH 218
Score = 114 bits (287), Expect = 4e-29
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 13 TALTLACAGGHEELVELLLS-RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
TAL AC GGH+++VE+L + ++ ++K G T L AA G+ +V +LL A +
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
++ K +A + +++ A + N DY + + +
Sbjct: 168 LRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 183 bits (466), Expect = 3e-54
Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 14/233 (6%)
Query: 104 KEHRNVSDYTPLSLAASGGY----VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
K+ + L LA + +I+ + A +N + L +PL LA +
Sbjct: 1 KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQP 58
Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN------VEHRAKTG 213
+ LL G D + + NT L LAC QG V +L ++ G
Sbjct: 59 EIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117
Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ 273
T L A+ GY+ + +L+ GADVNA P + TAL +A D + V LLL GA
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
V +G SP L + + L + +
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229
Score = 176 bits (448), Expect = 2e-51
Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)
Query: 38 EHRDKKGFTPLILAATAGHDK----VVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
+ + G + L LA V+ + A + Q+ + TPL LA + E+
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60
Query: 94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG----SKLGISP 149
E LL G + E R+ TPL LA G + + +L + + + G +
Sbjct: 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
L LA+++G+ V+LL+ +G+D+NAQ N TAL LA ++VSLLL A+V
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
G +P + + L + S + + + F E
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES--EDEESYDTESEFTEFTE 234
Score = 155 bits (395), Expect = 6e-44
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 10/200 (5%)
Query: 146 GISPLMLAAMNGHTAA----VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G S L LA ++ A ++ + + +N Q + T L LA + E+ LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG 66
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
+ E R G TPL A G + VL + + + + T L +A+
Sbjct: 67 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 258 KGHCRFVELLLSKGAQVEVKNKK-GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
G+ VELL+S GA V + G + L LA + + +V LL K GAD++ + S
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186
Query: 317 CLMAAFRKGHVKAVRWMVNH 336
+ + + + +
Sbjct: 187 PYQLTWGRPSTRIQQQLGQL 206
Score = 133 bits (337), Expect = 8e-36
Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 8/154 (5%)
Query: 12 DTALTLACAGGHEELVELLLSRGAD------IEHRDKKGFTPLILAATAGHDKVVDILLN 65
+T L LAC G V +L ++ + G T L LA+ G+ +V++L++
Sbjct: 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
AD+ AQ T L LA ++V LLL GA+ Y+P L
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR 198
Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
I + L E + T
Sbjct: 199 IQQQLGQLTLENLQMLPE--SEDEESYDTESEFT 230
Score = 84.1 bits (209), Expect = 2e-18
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 249 DTALTIAADKGH----CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
D+ L +A + + A + +N +PL LA + E L G
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEM 346
D + +D R + L A +G + +V + +
Sbjct: 69 CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 181 bits (463), Expect = 4e-54
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 35/226 (15%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
L A +V E+L + + TPL++A + I K L+ GA+IN
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSL 198
+ + + SP + A G T + +L D+N AL A +G + V L
Sbjct: 68 Q--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKL 124
Query: 199 LLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD 257
LL+ + +++ + G T L+EA +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLR------------------------------EGN 154
Query: 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
+ + V+LL+ GA +K+ G + + A G+ + ++L ++
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 181 bits (461), Expect = 7e-54
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
L A +++ E+L ++ D +G TPL +A ++ L++ AD+
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
Q+ D+P A + GR E++ +L + N L AA G+++ +KLLL
Sbjct: 68 QNSI-SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 132 THG-AEINSRTGSKLGISPLMLAAM-----NGHTAAVKLLLDMGSDINAQIETNRNTALT 185
G +I+ + G + L+ A + VKLL++ G+D + + + + TA+
Sbjct: 127 EDGREDIDFQN--DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-DNSGRTAMD 183
Query: 186 LACFQGRHEVVSLLL 200
A +G E+ +L
Sbjct: 184 YANQKGYTEISKILA 198
Score = 168 bits (427), Expect = 6e-49
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
+ L A ++L D ++ +T NT L +A E+ L+DR A+
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA-DVNAPPVPSSRD----TALTIAADKGH 260
+ + +P + A + G E+ +L D+N + AL AA+KGH
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK------HNRYGGNALIPAAEKGH 118
Query: 261 CRFVELLLSKG-AQVEVKNKKGNSPLWLAA-----NGGHLSVVELLCKHGADIDSQDNRK 314
V+LLL G ++ +N G + L A N + +V+LL ++GAD +DN
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178
Query: 315 VSCLMAAFRKGHVKAVRWMVNH 336
+ + A +KG+ + + + +
Sbjct: 179 RTAMDYANQKGYTEISKILAQY 200
Score = 138 bits (351), Expect = 3e-38
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 9/165 (5%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
L A + +V +L D V+ G TPL A +E+ + L+D+GAD
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVV 297
+N S D+ A +G + +L + N+ G + L AA GH+ V
Sbjct: 65 INL--QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 298 ELLCKHG-ADIDSQDNRKVSCLMAA-----FRKGHVKAVRWMVNH 336
+LL + G DID Q++ + L+ A + + V+ ++ +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167
Score = 121 bits (305), Expect = 8e-32
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVV 60
D++ S D+ A A G E++ +L D+ ++ G LI AA GH V
Sbjct: 64 DIN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122
Query: 61 DILLNH-KADMEAQSERTKDTPLSLAC-----SGGRYEVVELLLTRGANKEHRNVSDYTP 114
+LL + D++ Q+ T L A + ++V+LL+ GA++ ++ S T
Sbjct: 123 KLLLEDGREDIDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181
Query: 115 LSLAASGGYVNIIKLLLTH 133
+ A GY I K+L +
Sbjct: 182 MDYANQKGYTEISKILAQY 200
Score = 95.6 bits (239), Expect = 7e-23
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
L A + + E+L QV+ + +GN+PL +A + + + + L GADI+
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
Q++ S + A +G + + +M+ H
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 65.9 bits (162), Expect = 1e-12
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
+K + + L A V E+L +D D + L A ++ + +++
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 336 H 336
Sbjct: 61 R 61
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 182 bits (463), Expect = 7e-54
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 6/231 (2%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
++ LA +G +EL E +L+ + D+ T L A +AGH ++V+ LL
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
+ + + +PL +A S G E+V+ LL +GA+ N + TPL AAS I +
Sbjct: 66 VNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
LL GA +++ + + AA G+ V +LL + N Q +T NT L LAC
Sbjct: 125 LLEGGANPDAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACD 181
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+ R E L+ + A++ K TPL A G + + L +G + +
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 178 bits (452), Expect = 3e-52
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 7/229 (3%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+LA SG E+ E +L + + T L A S G+ I++ LL G +N
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ G SPL +AA G VK LL G+ +NA N T L A + RHE+ +L
Sbjct: 69 KD--DAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVML 125
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
L+ AN + + T + AA+ G +++ +LL A N + +T L +A D+
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEE 183
Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
+ L+++GA + ++NK+ +PL +A G L ++ G +
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 163 bits (413), Expect = 9e-47
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 7/229 (3%)
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
VS+ +LA SG + + +L + + + L A GHT V+ LL
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTD--QDSRTALHWACSAGHTEIVEFLLQ 61
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227
+G +N + + + L +A G E+V LL + A+V + G TPL AAS E
Sbjct: 62 LGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120
Query: 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
+ +LL+ GA+ +A TA+ AA KG+ + V +LL A +++ +GN+PL L
Sbjct: 121 IAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
A + + + L GA I ++ + + L A KG + + +
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225
Score = 144 bits (364), Expect = 9e-40
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 3/194 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
I LA + +L S + + TAL AC G E+V LL
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
V + G +PL AAS G E+ + LL KGA VNA + T L AA K
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN--QNGCTPLHYAASKNRHEIAV 123
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG 325
+LL GA + K+ + + AA G+L +V +L + A + QD + L A +
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183
Query: 326 HVKAVRWMVNHVAQ 339
V+ +++V A
Sbjct: 184 RVEEAKFLVTQGAS 197
Score = 124 bits (312), Expect = 1e-32
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ LA E+ +L K+ + T L A S G+ E+ LL G
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 238 DVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
VN +D + L IAA G V+ LL KGA V N+ G +PL AA+
Sbjct: 65 PVND------KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+ +L + GA+ D++D+ + + A KG++K V ++ + A
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164
Score = 102 bits (256), Expect = 6e-25
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
+ N T L A + E+ +LL GA+ + +D T + AA G+ K+V ILL
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
+KA Q TPL LAC R E + L+T+GA+ N + TPL +A G +
Sbjct: 160 FYKASTNIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216
Query: 125 NIIKLLLTHGAEIN 138
+I L G E +
Sbjct: 217 GLILKRLAEGEEAS 230
Score = 50.6 bits (121), Expect = 3e-07
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
LA +G + E + + D + L A GH + V +++
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 177 bits (450), Expect = 7e-52
Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 9/222 (4%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
+ G L K + H ++ L + G +++V+ ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLP--LALLLDSSLEGEFDLVQRIIYE 59
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
+ N T L A G+ I+K L+ G +N+ G +PL AA +
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD--SDGWTPLHCAASCNNVQ 117
Query: 161 AVKLLLDMGSDINAQIETNRNTALTL--ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
K L++ G+ + A ++ TA +G + L + + K + L
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Query: 219 EAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
+ E + + +G + + A
Sbjct: 178 DYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 171 bits (436), Expect = 1e-49
Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 9/215 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+L + ++ G ++ + L+ ++ G +V ++ D
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS- 64
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ T L A G E+V+ L+ G N + +TPL AAS V + K L
Sbjct: 65 --LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 131 LTHGAEINSRTGS-KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
+ GA + + T S + G+T + L + + AL
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGVIYALWDYEP 181
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224
Q E + + + HR A
Sbjct: 182 QNDDE-LPMKEGDCMTIIHREDEDEIEWWWARLND 215
Score = 171 bits (435), Expect = 1e-49
Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 20/224 (8%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
L + HG + + L ++ L+ +++ G V+ ++ D
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
+ + TAL A G E+V L+ NV G TPL AAS V+V +
Sbjct: 63 PSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121
Query: 232 LLDKGADVNAP-PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
L++ GA V A ++G+ + + L ++ + NK LW
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
EL K G + + + W
Sbjct: 182 QNDD---ELPMKEGDCMT------------IIHREDEDEIEWWW 210
Score = 162 bits (412), Expect = 2e-46
Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 15/188 (7%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G L + G + L + +G ++V ++ +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
G+T L A G+ E+ + L+ G +VNA D T L AA +
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAASCNNV 116
Query: 262 RFVELLLSKGAQVEVKNKKGN---SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
+ + L+ GA V + G+ + L + + + L
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Query: 319 MAAFRKGH 326
+
Sbjct: 177 WDYEPQND 184
Score = 152 bits (386), Expect = 1e-42
Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 13/176 (7%)
Query: 4 DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
+ L + G +LV+ ++ D + +G T L A AGH ++V L
Sbjct: 30 RVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89
Query: 64 LNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSD---YTPLSLA 118
+ ++ A D TPL A S +V + L+ GA SD
Sbjct: 90 VQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146
Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
GY + L ++ K I L +L + G +
Sbjct: 147 MEEGYTQCSQFLYGVQEKMGIMN--KGVIYALWDYEPQNDD---ELPMKEGDCMTI 197
Score = 136 bits (346), Expect = 4e-37
Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+L + S + V+ L L++++ G ++ + ++ + D +
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64
Query: 241 APPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
P + + TAL A GH V+ L+ G V + G +PL AA+ ++ V +
Sbjct: 65 LP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 299 LLCKHGADI---DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
L + GA + D + + +G+ + +++
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163
Score = 125 bits (315), Expect = 9e-33
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
TG L + G + G V P L ++ +G V+ ++ +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP---LPLALLLDSSLEGEFDLVQRIIYE 59
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
+ N +G + L A GH +V+ L + G ++++ D+ + L A +V+
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119
Query: 331 RWMVNHVA 338
+++V A
Sbjct: 120 KFLVESGA 127
Score = 122 bits (309), Expect = 5e-32
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 5/148 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL A GH E+V+ L+ G ++ D G+TPL AA+ + +V L+ A + A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 73 QSERTKDTPLSL--ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ T G + + L N L N +L
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE---PQNDDELP 188
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGH 158
+ G + A +N
Sbjct: 189 MKEGDCMTIIHREDEDEIEWWWARLNDK 216
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 180 bits (457), Expect = 3e-51
Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 43/311 (13%)
Query: 10 NHDTALTLACAGGHE---ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
+ +A G + + LLL+ ++ + + LAA GH V++ L
Sbjct: 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150
Query: 67 KADMEAQSERTKD-TPLSLACSGGRYEVVELLLTRGANKEHRNV--SDYTPLSLAASG-G 122
+ ++ LA G V+ L + + +Y AA G G
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210
Query: 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNT 182
+ N+I LL + + G + + + +
Sbjct: 211 HHNVINFLLDCPVMLAY---------AEIHEFEYGEKYVNPFIARHVNRLKEM-----HD 256
Query: 183 ALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG---YVEVGRVL-----LD 234
A L+ G ++V+ + G L ++ R L +
Sbjct: 257 AFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
A +P + L +A G+ LLLS + + + ++ GG L
Sbjct: 308 ALAPTAT--IPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRL 362
Query: 295 SVVELLCKHGA 305
+ + +H
Sbjct: 363 DLRAVALEHHH 373
Score = 176 bits (447), Expect = 6e-50
Identities = 52/357 (14%), Positives = 95/357 (26%), Gaps = 45/357 (12%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
L+L ++E + + L ++E + L+ A +++ L +
Sbjct: 32 HFISANELSLM-TLSYKEAIHIFLPGTKNMEQVRQ-----LLCLYYAHYNRNAKQLWSDA 85
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
+SE CS + + LLLT + +Y LAA G+++++
Sbjct: 86 HKKGIKSEVICFVAAITGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 144
Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN-AQIETNRNTALTL 186
L LAA NGH + L ++ A I+ A
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204
Query: 187 ACFQ-GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA---- 241
A G H V++ LLD + + G V + +
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 257
Query: 242 --------------PPVPSSRDTALTIAADKGHCRFVELL--------LSKGAQVEVKNK 279
L + ++ + + A
Sbjct: 258 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
N L LA G+ LL + + G + + H
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVALEH 371
Score = 108 bits (272), Expect = 6e-26
Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 45/231 (19%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRD--KKGFTPLILAATA-GHDKVVDILL 64
++ + A LA GH ++ L + + AA GH V++ LL
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN---------------- 108
+ + G V + + +
Sbjct: 220 DCPVMLAYAE--------IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271
Query: 109 ----VSDYTPLSLAASGGYVNIIKLL--------LTHGAEINSRTGSKLGISPLMLAAMN 156
+ + L ++ + + A + G L LA
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD--ANELLRLALRL 329
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
G+ A LLL + + + + + GR ++ ++ L+ +
Sbjct: 330 GNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEHHHHHH 376
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 172 bits (439), Expect = 6e-51
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLL 200
GS + + G+ AV+L LD +D+N + + + L AC +GR VV +L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLI 59
Query: 201 DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
R A + + TPL AAS G+ ++ + LL AD+NA V + L A G
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQ 117
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMA 320
+ E L++ GA V + NK G P+ A + E K G +++
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP------YKD 171
Query: 321 AFRKGHVK 328
F KG +
Sbjct: 172 TFWKGTTR 179
Score = 169 bits (432), Expect = 6e-50
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 11/184 (5%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
+ C G+ V L L D+ D GF+PL A G VV++L+ A
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
+ + DTPL LA S G ++V+ LL A+ N PL A G + +
Sbjct: 64 RINVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122
Query: 129 LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC 188
L+ +GA ++ K G P+ A + MG ++N
Sbjct: 123 DLVANGALVSICN--KYGEMPVDKAKAPLRELLRERAEKMGQNLNR-------IPYKDTF 173
Query: 189 FQGR 192
++G
Sbjct: 174 WKGT 177
Score = 157 bits (400), Expect = 2e-45
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 11/185 (5%)
Query: 41 DKKGFTPLILAATAGHDKVVDILLNHKA-DMEAQSERTKDTPLSLACSGGRYEVVELLLT 99
+ + G+ V + L++ D+ + +PL AC GR VVE+L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM 60
Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
RGA N D TPL LAAS G+ +I++ LL + A+IN+ + G PL A G
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN--EHGNVPLHYACFWGQD 118
Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLME 219
+ L+ G+ ++ + A R + N+ P +
Sbjct: 119 QVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKD 171
Query: 220 AASGG 224
G
Sbjct: 172 TFWKG 176
Score = 151 bits (384), Expect = 4e-43
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
+ L AC G +VE+L+ RGA I ++ TPL LAA+ GH +V LL +KAD+ A
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+E + PL AC G+ +V E L+ GA N P+ A + + +
Sbjct: 101 VNEH-GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHT 159
G +N P G T
Sbjct: 160 MGQNLNRI--------PYKDTFWKGTT 178
Score = 143 bits (364), Expect = 3e-40
Identities = 41/161 (25%), Positives = 58/161 (36%), Gaps = 3/161 (1%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ C +G V L LD N + G +PL A G V +L+ +GA
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV 297
+N + DT L +AA GH V+ LL A + N+ GN PL A G V
Sbjct: 64 RINV--MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 298 ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
E L +GA + + + A
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162
Score = 47.8 bits (115), Expect = 1e-06
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ + ++ G+ V L + D++ D+ S L A R+G V ++
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 169 bits (430), Expect = 5e-49
Identities = 54/252 (21%), Positives = 94/252 (37%), Gaps = 45/252 (17%)
Query: 79 DTPLSLACSGGRYEVV-ELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
++PL LA + + +LL G R T L +AA + +L+ E+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 138 NSRTG---SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
G + L +A +N + V+ LL G+ ++A+ +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR---ATGSVFHY-------- 112
Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----T 250
+ G PL AA G E+ R+L++ GAD+ A +D T
Sbjct: 113 ----------RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------QDSLGNT 156
Query: 251 ALTIAADKGH----CRFVELLLSKGAQVEVK------NKKGNSPLWLAANGGHLSVVELL 300
L I + + C+ LLLS +K N +G +P LA G++ + + L
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216
Query: 301 CKHGADIDSQDN 312
+ I + +
Sbjct: 217 MQKRKHIAAAHH 228
Score = 166 bits (422), Expect = 6e-48
Identities = 50/280 (17%), Positives = 90/280 (32%), Gaps = 61/280 (21%)
Query: 12 DTALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
++ L LA + L +LL G ++ R G T L +AA + + +L+ ++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 71 EAQSERTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNI 126
+ ++ T L +A +V LL RGA+ R Y
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY--- 120
Query: 127 IKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL 186
G PL AA G V+LL++ G+DI AQ ++ NT L +
Sbjct: 121 -------------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQ-DSLGNTVLHI 160
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
Q ++ +LL + +
Sbjct: 161 LILQPNKTFA-----------------------------CQMYNLLLSYDGGDHLKSLEL 191
Query: 247 SRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
+ T +A +G+ + L+ K + + +
Sbjct: 192 VPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 139 bits (353), Expect = 4e-38
Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 53/246 (21%)
Query: 113 TPLSLAASGGYVNII-KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
+PL LAA V + KLL G E++ R +G + L +AA+ + A +L++ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRG--AMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
+ + T+ G T L A V + R
Sbjct: 63 LVFEPMTSEL-----------------------------YEGQTALHIAVINQNVNLVRA 93
Query: 232 LLDKGADVNA-----------PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
LL +GA V+A + + L+ AA G V LL+ GA + ++
Sbjct: 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153
Query: 281 GNSPLWLAANGGHLSVV----ELLCKHGADID------SQDNRKVSCLMAAFRKGHVKAV 330
GN+ L + + + LL + +N+ ++ A +G++
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 331 RWMVNH 336
+ ++
Sbjct: 214 QHLMQK 219
Score = 43.0 bits (102), Expect = 1e-04
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 281 GNSPLWLAANGGHL-SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
SPL LAA + ++ +LL G ++ + + L A +++A ++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 166 bits (424), Expect = 1e-48
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 34 GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
G+ + DK G + ++ +D L N++ TPL +AC G
Sbjct: 1 GSHM---DKNGEIVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENA 50
Query: 94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA 153
++ L+ E +++ T L A + I + LL+ G+ +N++ G +PLM +
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK--DFSGKTPLMWS 108
Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
+ G++ LL+ G+++N + T L +A GR E+V LL+ A++ R TG
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Query: 214 LTPLMEAASGGYVEVGRVLLD 234
LT A G EV ++ +
Sbjct: 168 LTAEASARIFGRQEVIKIFTE 188
Score = 166 bits (424), Expect = 1e-48
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 10/195 (5%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
N + + + ++ L +RD TPL++A G + +D L+ +
Sbjct: 7 NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
+E + T L A R + E LL++G+N ++ S TPL + GY +
Sbjct: 61 LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
LL HGA +N R + G +PL++A+ G + VK LL++G+DI+A+ + TA A
Sbjct: 120 LLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARI 176
Query: 190 QGRHEVVSLLLDRKA 204
GR EV+ + + +
Sbjct: 177 FGRQEVIKIFTEVRR 191
Score = 163 bits (415), Expect = 3e-47
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 22/209 (10%)
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
G++ + + + + L N R +PLM+A M G
Sbjct: 1 GSHM---DKNGEIVEKIKDEKSINQNLDFL------RNYRD--SYNRTPLMVACMLGMEN 49
Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
A+ L++ + + + +TAL A R + LL + +NV + +G TPLM +
Sbjct: 50 AIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108
Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
GY E+ LL+ GA+VN R+ T L +A+ G V+ LL GA +
Sbjct: 109 IIFGYSEMSYFLLEHGANVND------RNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGA 305
++ G + A G V+++ +
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 154 bits (393), Expect = 3e-44
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 22/201 (10%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G+ ++ K G + + L N + T L +AC G
Sbjct: 1 GSHMD-----KNGEIVEKIKDEKSINQNLDFL------RNYRDS-YNRTPLMVACMLGME 48
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD---- 249
+ L++ +E + G T L+ A + + LL KG++VN +D
Sbjct: 49 NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT------KDFSGK 102
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L + G+ LL GA V +N +G +PL +A+ G +V+ L + GADI +
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162
Query: 310 QDNRKVSCLMAAFRKGHVKAV 330
+D ++ +A G + +
Sbjct: 163 RDLTGLTAEASARIFGRQEVI 183
Score = 124 bits (315), Expect = 3e-33
Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 174 AQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
+ ++ N + + ++ + L + + + TPLM A G L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAIDKLV 55
Query: 234 DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
+ + +D TAL A E LLSKG+ V K+ G +PL +
Sbjct: 56 ENFDKLED------KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109
Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
G+ + L +HGA+++ ++ + L+ A + G + V+ ++
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156
Score = 90.5 bits (226), Expect = 4e-21
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
K G + L + T L +A G ++ L+
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNYRDS--------YNRTPLMVACMLGMENAIDKLVEN 57
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
++E K+ +G++ L A L + E L G++++++D + LM + G+ +
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
Query: 331 RWMVNHVA 338
+++ H A
Sbjct: 118 YFLLEHGA 125
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 162 bits (413), Expect = 2e-47
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
S+ L A G ++ V +L++ GAD+ D G+TPL LAA GH ++V+
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL + AD+ A TPL LA G E+VE+LL GA+ ++ +TPL LAA
Sbjct: 65 VLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
G++ I+++LL +GA++N++ K G + ++ NG+ ++L
Sbjct: 124 GHLEIVEVLLKNGADVNAQD--KFGKTAFDISIDNGNEDLAEILQ 166
Score = 157 bits (399), Expect = 2e-45
Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%)
Query: 33 RGADIEHR-DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
RG+ H L+ AA AG D V IL+ + AD+ A+ TPL LA G
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
E+VE+LL GA+ + + TPL LAA G++ I+++LL +GA++N+ G +PL
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND--MEGHTPLH 118
Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200
LAAM GH V++LL G+D+NAQ + TA ++ G ++ +L
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQ 166
Score = 154 bits (393), Expect = 2e-44
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 10/172 (5%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
GS + ++ L A GR + V +L+ A+V +G TPL AA G++E+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
VLL GADVNA D T L +AA GH VE+LL GA V + +G++P
Sbjct: 63 VEVLLKNGADVNA------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
L LAA GHL +VE+L K+GAD+++QD + + G+ +
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 129 bits (327), Expect = 3e-35
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+VE+LL GAD+ D G TPL LAA GH ++V++LL + AD+ A
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
TPL LA G E+VE+LL GA+ ++ T ++ G ++ ++L
Sbjct: 109 NDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Query: 133 H 133
Sbjct: 168 L 168
Score = 122 bits (309), Expect = 1e-32
Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 202 RKANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAA 256
R ++ H + L+EAA G + R+L+ GADVNA D T L +AA
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA------EDASGWTPLHLAA 55
Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
GH VE+LL GA V + G +PL LAA GHL +VE+L K+GAD+++ D +
Sbjct: 56 FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115
Query: 317 CLMAAFRKGHVKAVRWMVNHVA 338
L A GH++ V ++ + A
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGA 137
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 163 bits (416), Expect = 5e-47
Identities = 50/221 (22%), Positives = 72/221 (32%), Gaps = 10/221 (4%)
Query: 27 VELLLSRGADIEHRDKKGFTP---LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS 83
+ +L + + P L+ AA G +VV + D +E T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59
Query: 84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
A G Y +V+ L+T GAN + +TPL AAS I L+ HGA I + T
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT-L 118
Query: 144 KLGISPLMLAAM--NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
G + G+ L D+ + + AL + +S
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NSGAVYALWDYS-AEFGDELSFREG 176
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVE-VGRVLLDKGADVNA 241
V R T AA G V R V
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217
Score = 158 bits (403), Expect = 3e-45
Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 8/229 (3%)
Query: 127 IKLLLTHGAEINSRTGSKL-GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
++ +L ++L + L+ AA+ G V+ + +D + E TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59
Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245
A + +V L+ ANV G TPL AAS + L+ GA + A +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL- 118
Query: 246 SSRDTALTIAAD--KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
S TA +G+ L + + N LW + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGE 177
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQT 352
+ +D + + A G V N+ FP + ++
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGYV--PRNYFGLFPRVKPQRSKVKH 224
Score = 130 bits (330), Expect = 5e-35
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 6/166 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL A G + +V+ L++ GA++ D G+TPL AA+ + L+ H A + A
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 73 QSERTKDTPLSLA--CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ T G + L + N L S + + +
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL-WDYSAEFGDELSFR 174
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAV-KLLLDMGSDINAQ 175
+ R G + AA++G V + + + Q
Sbjct: 175 EGESVTVLRRDGP--EETDWWWAALHGQEGYVPRNYFGLFPRVKPQ 218
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 159 bits (404), Expect = 6e-46
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
I SRT + G ++ +GH+ + + +D+ + T A +
Sbjct: 3 NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADE 57
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
+ +S LL+ +V+ + G T L+ A G + R+L + GAD++ + TAL
Sbjct: 58 QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-TALH 115
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
+AA VE L+ GA +EV++++G + L LA + + G I +
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 156 bits (396), Expect = 8e-45
Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 10/171 (5%)
Query: 8 ESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ + + GH AD+ + TP AA ++ + LL
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL- 64
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYV 124
D++A E T L G + V LL GA+ +HR++ T L +AA
Sbjct: 65 EDRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
+++ L+ GA+I + G++ L LA T + G I +
Sbjct: 124 EVVEALVELGADIEVED--ERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Score = 153 bits (390), Expect = 6e-44
Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 6/162 (3%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
+ G A+ TP AA + LL ++++
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 71
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ G + L+ A G V+LL + G+D++ + TAL +A R EVV L
Sbjct: 72 VD--ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
++ A++E + GLT L A + G +
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 146 bits (372), Expect = 2e-41
Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 41/217 (18%)
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
EV +++ +R A + + G+ A++ S +P
Sbjct: 1 EVNKIIGSRTAGEG------AMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWW 49
Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR-A 210
AA A+ LL+ D++A + N TAL G + V LL + A+++HR
Sbjct: 50 TAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
+ GLT L AA EV L++ GAD+ D TAL +A +
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGN 161
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
+ G ++ G V+ +L
Sbjct: 162 PMQFGRRI-----------------GLEKVINVLEGQ 181
Score = 137 bits (348), Expect = 6e-38
Identities = 43/166 (25%), Positives = 60/166 (36%), Gaps = 24/166 (14%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV SE E T A E+ + LL D++ D+ G T L+ A G DK V
Sbjct: 39 DVVSEYE----TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR 93
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+L AD++ + R T L +A R EVVE L+ GA+ E + T L LA
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ G I + +L
Sbjct: 154 LKTTPKGNPMQFGRRIG-------------------LEKVINVLEG 180
Score = 131 bits (332), Expect = 8e-36
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 7/174 (4%)
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
++ I ++ + G A+V TP AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57
Query: 227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK-GNSPL 285
+ LL + DV+A V + TAL A G + V LL GA ++ ++ + G + L
Sbjct: 58 QALSQLL-EDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114
Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
+AA VVE L + GADI+ +D R ++ L A + +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 156 bits (397), Expect = 3e-45
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
L A A G E V LL GA+ + G P+ + G +V ++LL H A+
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 71
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
T P+ A G + + +L GA + R+ P+ LA G+ ++ + L
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHT 159
+ A G +
Sbjct: 132 AAAGGTRGSN-------HARIDAAEGPS 152
Score = 144 bits (367), Expect = 5e-41
Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 31 LSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR 90
+ A + L AA G + V LL A+ A + P+ + G
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMMM-GS 56
Query: 91 YEVVELLLTRGANKEHRNVSDYT-PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
V ELLL GA + + T P+ AA G+++ + +L GA ++ R G P
Sbjct: 57 ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD--AWGRLP 114
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
+ LA GH + L + +G ++
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGS------NHARIDAAEGPSDIP 155
Score = 143 bits (364), Expect = 1e-40
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 10/161 (6%)
Query: 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225
++ + + + L A +GR E V LL+ AN G P+ G
Sbjct: 1 MEPAAGSSME---PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-S 56
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
V +LL GA+ N P++ + AA +G + +L GA+++V++ G P+
Sbjct: 57 ARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LA GH V L ++ +G
Sbjct: 116 DLAEELGHRDVARYLRAAAGGTRGSNH-----ARIDAAEGP 151
Score = 141 bits (358), Expect = 9e-40
Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 22/173 (12%)
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
+ A + + L AA G V+ LL+ G++ NA R + +
Sbjct: 1 MEPAAGSSMEPSA----DWLATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMM-M 54
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLT-PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
G V LLL A LT P+ +AA G+++ VL GA ++ RD
Sbjct: 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------RD 108
Query: 250 ----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
+ +A + GH L + N + A G + +
Sbjct: 109 AWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIPD 156
Score = 139 bits (354), Expect = 4e-39
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 98 LTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG 157
+ A L+ AA+ G V ++ LL GA N+ G P+ + M G
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPN--SYGRRPIQVMMM-G 55
Query: 158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
+LLL G++ N + A +G + + +L A ++ R G P+
Sbjct: 56 SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 218 MEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
A G+ +V R L I A +G +
Sbjct: 116 DLAEELGHRDVARYLRAAAGGTRG-------SNHARIDAAEGPSDIPD 156
Score = 139 bits (352), Expect = 8e-39
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 11/165 (6%)
Query: 64 LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
+ A S L+ A + GR E V LL GAN N P+ + G
Sbjct: 1 MEPAAG---SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
+ +LLL HGAE N + P+ AA G + +L G+ ++ + +
Sbjct: 57 ARVAELLLLHGAEPNCADPAT-LTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLP 114
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
+ LA G +V L A+ G ++
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDI 154
Score = 93.7 bits (234), Expect = 1e-22
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + + + A G + + +L GA ++ RD G P+ LA GH V
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
L + + G ++ +
Sbjct: 129 YLRAAAGGTRGS------NHARIDAAEGPSDIPD 156
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 151 bits (385), Expect = 2e-43
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
L AA G + LL ++NAQ TAL + G E+ LL R AN +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFV 264
+ +TG + +AA G+++ + LL+ ADVN D L +AA +GH R V
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVV 119
Query: 265 ELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
E L+ A V +N KG++ LA G VV L+ +GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 150 bits (382), Expect = 5e-43
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
L A A G E + LL ++ ++ G T L + G+ ++ LL A+ +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
+ T + A G + ++ LL A+ + PL LAA G++ +++ L+
Sbjct: 66 KDR-TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 133 HGAE-INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
H A + R G + LA + G V L+ G
Sbjct: 125 HTASNVGHRN--HKGDTACDLARLYGRNEVVSLMQANG 160
Score = 145 bits (369), Expect = 4e-41
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
L+ A + G E + LL N +N T L + G I + LL GA +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDL 65
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ + G + + AA G ++ LL+ +D+N + + N L LA +G VV L
Sbjct: 66 KD--RTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFL 122
Query: 200 LDRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
+ A NV HR G T A G EV ++ GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 144 bits (365), Expect = 1e-40
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGA 102
L AA G + + LL + ++ AQ+ T L + G E+ LL RGA
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVM-KLGNPEIARRLLLRGA 61
Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
N + ++ + + + AA G+++ ++ LL A++N G PL LAA GH V
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED--NEGNLPLHLAAKEGHLRVV 119
Query: 163 KLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
+ L+ S++ + +TA LA GR+EVVSL+ A
Sbjct: 120 EFLVKHTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 136 bits (346), Expect = 5e-38
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
L A +G E ++ LL NV + G T L G E+ R LL +GA+ +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPD 64
Query: 241 APPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296
+D + AA G ++ LL A V +++ +GN PL LAA GHL V
Sbjct: 65 L------KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 297 VELLCKHGA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
VE L KH A ++ ++++ + A G + V M +
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 127 bits (323), Expect = 9e-35
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL + G+ E+ LL RGA+ + +D+ GF + AA AG + LL +AD+
Sbjct: 40 TALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
+ + PL LA G VVE L+ A N HRN T LA G ++ L+
Sbjct: 99 EDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 132 THGA 135
+GA
Sbjct: 158 ANGA 161
Score = 115 bits (292), Expect = 2e-30
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLL 268
L AA+ G +E LL +VNA ++ TAL + G+ LL
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNA------QNGFGRTALQVMK-LGNPEIARRLL 57
Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
+GA ++K++ G + + AA G L ++ L + AD++ +DN L A ++GH++
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 329 AVRWMVNHVA 338
V ++V H A
Sbjct: 118 VVEFLVKHTA 127
Score = 50.8 bits (123), Expect = 9e-08
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ L AA G L + L ++ ++++Q+ + L + G+ + R ++
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLR 59
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 148 bits (376), Expect = 2e-42
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
L A G ++ V +L++ GA D G +PL LAA GH ++LL +A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
RTK TPL +A S G +VE+LL GA+ +++ T L A + +++LL
Sbjct: 63 ---RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ +GA+++++ SK + ++ NG+ ++L
Sbjct: 120 IKYGADVHTQ--SKFCKTAFDISIDNGNEDLAEIL 152
Score = 144 bits (366), Expect = 6e-41
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
L+ AA G V++L+ G+ + + L LA G +LL + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFV 264
R K TPL AAS G+ + VLL GADVNA +D TAL A + H V
Sbjct: 63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNA------KDMLKMTALHWATEHNHQEVV 116
Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
ELL+ GA V ++K + ++ + G+ + E+L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 143 bits (363), Expect = 2e-40
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
L+ AA AG D V IL+ + A T +PL LA G + E+LL G +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
++ R D TPL +AAS G+ NI+++LL HGA++N++ L ++ L A + H V+
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD--MLKMTALHWATEHNHQEVVE 117
Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
LL+ G+D++ Q TA ++ G ++ +L
Sbjct: 118 LLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152
Score = 134 bits (339), Expect = 4e-37
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
+ L A G+ + V +L+ A G +PL AA G+ VLL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
+A R T L +AA +GH VE+LL GA V K+ + L A H
Sbjct: 60 RDA------RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
VVELL K+GAD+ +Q + + G+
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 115 bits (292), Expect = 2e-30
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
L+EAA G + R+L+ GA + L +AA GH E+LL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
+ + K +PL +AA+ GH ++VE+L KHGAD++++D K++ L A H + V
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 333 MVNHVA 338
++ + A
Sbjct: 119 LIKYGA 124
Score = 93.6 bits (234), Expect = 1e-22
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
D+ T+ T L +A + GH +VE+LL GAD+ +D T L A H +VV+
Sbjct: 59 SRDARTK-VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
+L+ + AD+ QS+ K T ++ G ++ E+L
Sbjct: 118 LLIKYGADVHTQSKFCK-TAFDISIDNGNEDLAEIL 152
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 147 bits (373), Expect = 7e-42
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 149 PLMLAAMNGHTAAVKLLLD-MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
L AA G V+ LL +A TAL + F G + LL + A+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMMF-GSTAIALELLKQGASPN 62
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVE 265
+ +G +P+ +AA G+++ +VL++ GADVN P + +A +GH V
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP----DGTGALPIHLAVQEGHTAVVS 118
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
L + + + ++ +G +PL LA G +V++L H
Sbjct: 119 FLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 145 bits (368), Expect = 4e-41
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 13 TALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
L+ A A G +E+ LL + ++ G T L + G + LL A
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
Q + +P+ A G + +++L+ GA+ + + P+ LA G+ ++ L
Sbjct: 63 VQDT-SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
++++ R G++PL LA G V +L
Sbjct: 122 -AESDLHRRD--ARGLTPLELALQRGAQDLVDILQG 154
Score = 145 bits (368), Expect = 4e-41
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 43 KGFTPLILAATAGHDKVVDILLN-HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG 101
+ L AA G + V LL+ +A + T L + G + LL +G
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMFG-STAIALELLKQG 58
Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
A+ ++ S +P+ AA G+++ +K+L+ HGA++N G P+ LA GHTA
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD--GTGALPIHLAVQEGHTAV 116
Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
V L SD++ + + T L LA +G ++V +L
Sbjct: 117 VSFLAA-ESDLHRR-DARGLTPLELALQRGAQDLVDILQG 154
Score = 139 bits (353), Expect = 5e-39
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 181 NTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
L+ A +G + V LL R+ + + + G T L G + LL +GA
Sbjct: 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASP 61
Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
N +D + + AA G +++L+ GA V V + G P+ LA GH +
Sbjct: 62 NV------QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115
Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337
VV L +D+ +D R ++ L A ++G V + H+
Sbjct: 116 VVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156
Score = 126 bits (320), Expect = 2e-34
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
TAL + G + LL +GA +D G +P+ AA G + +L+ H AD+
Sbjct: 38 TALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96
Query: 73 QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
T P+ LA G VV L ++ R+ TPL LA G +++ +L
Sbjct: 97 PDG-TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Query: 133 H 133
H
Sbjct: 155 H 155
Score = 110 bits (278), Expect = 1e-28
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
L AA+ G V+ R LL + +A + TAL + G LL +G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQG 58
Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
A V++ G SP+ AA G L +++L +HGAD++ D + A ++GH V
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118
Query: 332 WMVNH 336
++
Sbjct: 119 FLAAE 123
Score = 83.6 bits (208), Expect = 3e-19
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 250 TALTIAADKGHCRFV-ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
L+ AA +G + V LL + + N+ G + L + G ++ L K GA +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPN 62
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
QD S + A R G + ++ +V H A
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92
Score = 47.8 bits (115), Expect = 9e-07
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 280 KGNSPLWLAANGGHLSVV-ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ L AA G + V LL + D+ + + L G ++
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQ 57
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 151 bits (383), Expect = 7e-42
Identities = 58/286 (20%), Positives = 95/286 (33%), Gaps = 67/286 (23%)
Query: 13 TALTLACAGGHEELVELLL-------SRGADIEHRDKK-GFTPLILA---ATAGHDKVVD 61
++ A A + + +E LL R D E +D + G T L+ A G + +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 62 ILLNHKADMEAQSERTKD----------TPLSLACSGGRYEVVELLLTRGANKEHRNVSD 111
+LL+ ++ + T L +A +V LL+ GA+ + D
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 112 Y--------------TPLSLAASGGYVNIIKLLLTHG---AEINSRTGSKLGISPLMLAA 154
+ PLSLAA + I+K LL + A+I++R +G + L
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD--SVGNTVLHALV 192
Query: 155 MNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGL 214
NT + + + + L E + GL
Sbjct: 193 EVADNTVD------------------NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
TPL AAS G + V +L + AA H
Sbjct: 235 TPLALAASSGKIGVLAYILQREIHEP---------ECRHAAAHHHH 271
Score = 145 bits (367), Expect = 1e-39
Identities = 53/298 (17%), Positives = 88/298 (29%), Gaps = 63/298 (21%)
Query: 32 SRGADIEHRDKKGFTPLILAATAGHDKVVDILLN-------HKADMEAQSERTKDTPLSL 84
S A + + A + + ++ LL D E + T T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 85 A---CSGGRYEVVELLLTRGANKEH-----------RNVSDYTPLSLAASGGYVNIIKLL 130
A G+ + + LLL + T L +A + ++ LL
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 131 LTHGAEINSRT------------GSKLGISPLMLAAMNGHTAAVKLLLDMGS---DINAQ 175
+ +GA++ + G G PL LAA A VK LL DI+A+
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
++ NT L + V + T + + + +G L
Sbjct: 181 -DSVGNTVLHALVEVADNTVDN-----------------TKFVTSMYNEILILGAKLHPT 222
Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
T L +AA G + +L + AA+ H
Sbjct: 223 LKLEEIT--NRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHH 271
Score = 112 bits (283), Expect = 3e-28
Identities = 40/190 (21%), Positives = 60/190 (31%), Gaps = 43/190 (22%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGF--------------TP 47
+++ TAL +A + LV LL+ GAD++ F P
Sbjct: 92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151
Query: 48 LILAATAGHDKVVDILLNH---KADMEAQSERTKDTPLSLACSGGR-------------- 90
L LAA +V LL + AD+ A+ T L
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNTVDNTKFVTSMYN 210
Query: 91 --YEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
+ L +E N TPL+LAAS G + ++ +L
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---------EPE 261
Query: 149 PLMLAAMNGH 158
AA + H
Sbjct: 262 CRHAAAHHHH 271
Score = 91.0 bits (226), Expect = 1e-20
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 25/131 (19%)
Query: 13 TALTLACAGGHEELVELLLSRG---ADIEHRDKKGFTPLILAATAGHDKVV--------- 60
L+LA +V+ LL ADI RD G T L + V
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209
Query: 61 DILLNHKADMEAQSE----RTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
+ +L A + + + TPL+LA S G+ V+ +L R ++
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-------EC 262
Query: 115 LSLAASGGYVN 125
AA + +
Sbjct: 263 RHAAAHHHHHH 273
Score = 39.8 bits (93), Expect = 0.002
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 269 SKGAQVEVKNKKGNSPLWLAANGG-------HLSVVELLCKHGADIDSQDNRK-VSCLMA 320
S A + ++ A L ++ K D + +D +CL+
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 321 AF---RKGHVKAVRWMVNHVAQ 339
A G + +++ +
Sbjct: 61 AMLNLHNGQNDTIALLLDVARK 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 145 bits (367), Expect = 1e-40
Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIE--TNRNTALTLACFQGRHEVVSLLLDRKAN 205
+ AAM G L + G + + L + R+++ L+++ A+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 206 VEHRAKTGLTPLMEAASGGY------VEVGRVLLDKGADVNAPPVPSSRD----TALTIA 255
++ R K G T GG E+ ++ L+KGAD+ A +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA------LYKPYKIVVFKN 121
Query: 256 ADKGHCRFVE-------LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
E + G Q+ +K+K G + L ++++ + +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Query: 309 SQDN 312
++N
Sbjct: 182 LKEN 185
Score = 138 bits (350), Expect = 3e-38
Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 39/209 (18%)
Query: 42 KKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLT 99
+ + AA G + L + + ++ L RY++ L+
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNI------IKLLLTHGAEINSRTGSKLGISPLMLA 153
+GA+ + R T GG +I K+ L GA+I + K +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY--KPYKIVVFKN 121
Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKT 212
N +++ + L+ + + + K
Sbjct: 122 IFNYFVDENEMI----------------------------PLYKLIFSQSGLQLLIKDKW 153
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
GLT L +++ D N
Sbjct: 154 GLTALEFVKRCQKPIALKMMEDYIKKYNL 182
Score = 136 bits (344), Expect = 2e-37
Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 19/179 (10%)
Query: 13 TALTLACAGGHEELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
++ A G E L +G + + + L K+ L+N AD
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 70 MEAQSERTKDTPLSLACSGGR------YEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
++++++ T GG E+ ++ L +GA+ + +
Sbjct: 68 IKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126
Query: 124 VNIIK-------LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
V+ + + G ++ + K G++ L A+K++ D N +
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKD--KWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 122 bits (309), Expect = 1e-32
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 26/180 (14%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANV---EHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
+ ++ A G +E L ++ ++ L ++ L++K
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 236 GADVNAPPVPSSRD----TALTIAADKGH------CRFVELLLSKGAQVEVKNKKGNSPL 285
GAD+ + R T G ++ L KGA + K +
Sbjct: 65 GADIKS------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118
Query: 286 WLAANGGHLSVVE-------LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ + E + + G + +D ++ L R A++ M +++
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 102 bits (255), Expect = 3e-25
Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT----ALTIAADKGHCRFVE 265
A + + AA G E L +KG + + L D+ +
Sbjct: 3 AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISM 59
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSV------VELLCKHGADIDSQDNRKVSCLM 319
L++KGA ++ + K+G + + GG + ++ + GADI + +
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 320 AAFRKGHVKAVR 331
V
Sbjct: 120 KNIFNYFVDENE 131
Score = 94.0 bits (234), Expect = 2e-22
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 15/120 (12%)
Query: 2 DVDSETESNHDTALTLACAGGHE------ELVELLLSRGADIEHRDKKGFTPLILAATAG 55
D+ S T+ T GG EL ++ L +GADI K +
Sbjct: 67 DIKSRTKEGT-TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 56 HD------KVVDILLNHK-ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
+ ++ + + + + T L + ++++ +
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 70.9 bits (174), Expect = 2e-14
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVE-------LLLSRGADIEHRDKKGFTPLILAATA 54
D+ + + + + + E + G + +DK G T L
Sbjct: 106 DITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164
Query: 55 GHDKVVDILLNHKADMEAQSE 75
+ ++ ++ +
Sbjct: 165 QKPIALKMMEDYIKKYNLKEN 185
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 142 bits (362), Expect = 1e-40
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
I+ + + L A +G+ E V LL+ A+ + G P+ G +V
Sbjct: 2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQV 59
Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
+LL GA+ N P++ + AA +G + +L GA+++V + G P+ LA
Sbjct: 60 AELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 289 ANGGHLSVVELLCKHGAD 306
GH + L D
Sbjct: 119 EEQGHRDIARYLHAATGD 136
Score = 142 bits (361), Expect = 2e-40
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 34 GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
I L AA G + V LL AD A + P+ + G +V
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMMM-GSAQV 59
Query: 94 VELLLTRGANKEHRNVSDYT-PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
ELLL GA + + T P+ AA G+++ + +L GA ++ G P+ L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD--AWGRLPVDL 117
Query: 153 AAMNGHTAAVKLLLDMGSD 171
A GH + L D
Sbjct: 118 AEEQGHRDIARYLHAATGD 136
Score = 142 bits (361), Expect = 2e-40
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + D L A A G E V LL GAD ++ G P+ + G +V +
Sbjct: 4 GIHMLGG-SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
+LL H A+ T P+ A G + + +L GA + + P+ LA
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 122 GYVNIIKLLLTHGA 135
G+ +I + L
Sbjct: 122 GHRDIARYLHAATG 135
Score = 136 bits (346), Expect = 3e-38
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 3/138 (2%)
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
S L+ AA+ G V ++ LL GA+ N+ + G P+ + G
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN--RFGRRPIQVMM-MGSAQ 58
Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
+LLL G++ N + A +G + + +L A ++ G P+ A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 221 ASGGYVEVGRVLLDKGAD 238
G+ ++ R L D
Sbjct: 119 EEQGHRDIARYLHAATGD 136
Score = 130 bits (330), Expect = 4e-36
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKG 259
+ + L AA+ G VE R LL+ GAD NA + + + G
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA------LNRFGRRPIQVMM-MG 55
Query: 260 HCRFVELLLSKGAQVEVKNKKGN-SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
+ ELLL GA+ + P+ AA G L + +L + GA +D D +
Sbjct: 56 SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV 115
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
A +GH R++
Sbjct: 116 DLAEEQGHRDIARYLHAATG 135
Score = 84.0 bits (209), Expect = 2e-19
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ + + + A G + + +L GA ++ D G P+ LA GH +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 62 ILLNHKAD 69
L D
Sbjct: 129 YLHAATGD 136
Score = 64.8 bits (159), Expect = 9e-13
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
+ + ++ L AA G + V L + GAD ++ + + G +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60
Query: 331 RWMVNH 336
++ H
Sbjct: 61 ELLLLH 66
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 142 bits (360), Expect = 2e-40
Identities = 60/125 (48%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV +LL AD+ A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
+ K+ TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KLL
Sbjct: 64 K---DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 131 LTHGA 135
L GA
Sbjct: 121 LEAGA 125
Score = 138 bits (350), Expect = 6e-39
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
T L LA G EVV LLL+ A+V + K G TPL AA G++EV ++LL+ GADVN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 241 APPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296
A +D T L +AA GH V+LLL GA V K+K G +PL LAA GHL V
Sbjct: 63 A------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 297 VELLCKHGA 305
V+LL + GA
Sbjct: 117 VKLLLEAGA 125
Score = 129 bits (328), Expect = 7e-36
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KLLL GA++N+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+ K G +PL LAA NGH VKLLL+ G+D+NA+ + N T L LA G EVV LL
Sbjct: 64 KD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120
Query: 200 LDRKA 204
L+ A
Sbjct: 121 LEAGA 125
Score = 125 bits (316), Expect = 3e-34
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL AA G++EV ++LL+ GADVNA + T L +AA GH V+LLL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
V K+K G +PL LAA GHL VV+LL + GAD++++D + L A R GH++ V+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 333 MVNH 336
++
Sbjct: 120 LLEA 123
Score = 108 bits (272), Expect = 4e-28
Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+++ + N T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV
Sbjct: 27 DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA 102
+LL AD+ A+ K+ TPL LA G EVV+LLL GA
Sbjct: 86 LLLEAGADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 99.7 bits (250), Expect = 4e-25
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L +AA GH V+LLL GA V K+K G +PL LAA GHL VV+LL + GAD+++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+D + L A R GH++ V+ ++ A
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 142 bits (362), Expect = 3e-40
Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 12 DTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
D L A G E V+ L + + + + TPL AA VV+ LL H AD+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 71 EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
A+ + PL ACS G YEV ELL+ GA ++ +TPL AA+ G I KLL
Sbjct: 69 HAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
L HGA+ + + G +PL L +G T LL
Sbjct: 128 LQHGADPTKKN--RDGNTPLDLVK-DGDTDIQDLLRGDA 163
Score = 140 bits (357), Expect = 2e-39
Identities = 52/172 (30%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Query: 34 GADIEHRDKKGFTPLILAATAGHDKVVDILL-NHKADMEAQSERTKDTPLSLACSGGRYE 92
GA + + L+ AA AG + V L + R + TPL A R
Sbjct: 1 GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVS 56
Query: 93 VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
VVE LL GA+ ++ PL A S G+ + +LL+ HGA +N +PL
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD--LWKFTPLHE 114
Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
AA G KLLL G+D + + NT L L G ++ LL A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 140 bits (355), Expect = 3e-39
Identities = 61/209 (29%), Positives = 80/209 (38%), Gaps = 49/209 (23%)
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
GA N L AA G V +K L T + +N R +PL AA +
Sbjct: 1 GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
V+ LL G+D++A + K GL PL A
Sbjct: 57 VVEYLLQHGADVHA----------------------------------KDKGGLVPLHNA 82
Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
S G+ EV +L+ GA VN D T L AA KG +LLL GA
Sbjct: 83 CSYGHYEVAELLVKHGAVVNV------ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGA 305
KN+ GN+PL L + G + +LL A
Sbjct: 137 KNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 132 bits (334), Expect = 3e-36
Identities = 49/175 (28%), Positives = 66/175 (37%), Gaps = 16/175 (9%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVE 227
G+ N+ + L A G E V L + N TPL AA V
Sbjct: 1 GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56
Query: 228 VGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
V LL GADV+A +D L A GH ELL+ GA V V + +
Sbjct: 57 VVEYLLQHGADVHA------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
PL AA G + +LL +HGAD ++ + L + G + A
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 126 bits (320), Expect = 3e-34
Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ E T L A +VE LL GAD+ +DK G PL A + GH +V ++L+
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
H A + K TPL A + G+YE+ +LLL GA+ +N TPL L G +
Sbjct: 97 HGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD 154
Query: 126 IIKLLLTHGA 135
I LL A
Sbjct: 155 IQDLLRGDAA 164
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 144 bits (366), Expect = 9e-40
Identities = 50/322 (15%), Positives = 80/322 (24%), Gaps = 95/322 (29%)
Query: 13 TALTLACAGGHEELVELLL--------SRGADIEHRDKKGFTPLILAA---TAGHDKVVD 61
L + G E + LL G T L+ A G + +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
LL D A ++ L +A
Sbjct: 64 PLLQIDKDSGN-----------------------PKPLVNAQCTDEFYQGHSALHIAIEK 100
Query: 122 GYVNIIKLLLTHGAEINSRT-----------GSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
+ +KLL+ +GA+++ R G PL LAA V LL+
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160
Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
A++E G T L
Sbjct: 161 Q-------------------------------PASLEATDSLGNTVLHALVMIADNSPE- 188
Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
++AL I G + L E+ N +G +PL LAA
Sbjct: 189 ------------------NSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230
Query: 291 GGHLSVVELLCKHGADIDSQDN 312
G + + + + + +
Sbjct: 231 EGKIEIFRHILQREFSGAAAHH 252
Score = 122 bits (307), Expect = 1e-31
Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 54/264 (20%)
Query: 111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS------KLGISPLMLAAMN---GHTAA 161
D L S G + LL + + G + LM A +N G A
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 162 VKLLLDMGSD-------INAQIET---NRNTALTLACFQGRHEVVSLLLDRKANVEHRA- 210
+ LL + D +NAQ ++AL +A + + V LL++ A+V RA
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 211 ------------KTGLTPLMEAASGGYVEVGRVLLDKG---ADVNAPPVPSSRDTALTIA 255
G PL AA +V LL+ A + A S +T L
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHAL 179
Query: 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV 315
N NS L + G L + LC + +++ +
Sbjct: 180 VMIA-----------------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222
Query: 316 SCLMAAFRKGHVKAVRWMVNHVAQ 339
+ L A ++G ++ R ++
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFS 246
Score = 116 bits (292), Expect = 2e-29
Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 48/207 (23%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ +AL +A + V+LL+ GAD+ R F +
Sbjct: 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE------- 137
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG---ANKEHRNVSDYTPLSLAASGG 122
PLSLA +++VV LL A+ E + T L
Sbjct: 138 --------------LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL------- 176
Query: 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN- 181
H + + S L++ +G L N
Sbjct: 177 ----------HALVMIADNSP--ENSALVIHMYDGLLQMGARLCPTVQLEEIS---NHQG 221
Query: 182 -TALTLACFQGRHEVVSLLLDRKANVE 207
T L LA +G+ E+ +L R+ +
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 72.5 bits (178), Expect = 2e-14
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
V S ++AL + G ++ L E + +G TPL LAA G ++
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237
Query: 61 DILLNHKADMEA 72
+L + A
Sbjct: 238 RHILQREFSGAA 249
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 140 bits (356), Expect = 1e-39
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 3 VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
+D T +T L +A G VE LL G+D +D G+TPL A GH KVV++
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122
LL HKA + + D+PL A G ++V+LLL+ GA++ N+ P+
Sbjct: 62 LLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120
Query: 123 YVNIIKLLLTHGAEINS 139
+++ L + + S
Sbjct: 121 MKSLLLLPEKNESSSAS 137
Score = 137 bits (348), Expect = 1e-38
Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 169 GSDINAQIETNRN--TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
G D TN T L +A +G V LL ++ + G TPL EA + G++
Sbjct: 1 GIDPF----TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL 56
Query: 227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLW 286
+V +LL A VN D+ L AA GH V+LLLS GA N G P+
Sbjct: 57 KVVELLLQHKALVNTTG--YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Query: 287 LAANGGHLSVVELLCKHGADIDS 309
+ S++ L K+ + S
Sbjct: 115 YTDDESMKSLLLLPEKNESSSAS 137
Score = 136 bits (346), Expect = 3e-38
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 34 GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRY 91
G D + +G T L +A+ G V+ LL + +D + TPL AC+ G
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHL 56
Query: 92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
+VVELLL A + +PL AA G+V+I+KLLL++GA N+ G+ P+
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN--IFGLRPVD 114
Query: 152 LAAMNGHTAAVKLLLDMGSDINA 174
+ + L +A
Sbjct: 115 YTDDESMKSLLLLPEK-NESSSA 136
Score = 124 bits (314), Expect = 9e-34
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
T L +A G VE LL G++ ++ + +TPL A + G++ +++LLL H A +N+
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
SPL AA NGH VKLLL G+ NA + + ++ L
Sbjct: 72 T--GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLP 128
Query: 200 LDRKAN 205
+++
Sbjct: 129 EKNESS 134
Score = 120 bits (304), Expect = 2e-32
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
G T L A+ G + LL G+D N +D T L A + GH + VEL
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNV------KDHAGWTPLHEACNHGHLKVVEL 61
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
LL A V + +SPL AA GH+ +V+LL +GA ++ + + + +
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121
Query: 327 VKAV 330
+
Sbjct: 122 KSLL 125
Score = 96.7 bits (242), Expect = 6e-24
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 236 GADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291
G D + T L IA+ KG VE LL G+ VK+ G +PL A N
Sbjct: 1 GIDPFT-------NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH 53
Query: 292 GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
GHL VVELL +H A +++ + S L A + GHV V+ ++++ A
Sbjct: 54 GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 128 bits (324), Expect = 2e-35
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
D A G + V+ +++G D+ + G PL AA G ++++ LL AD+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 72 AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
A + TPL A G V+LLL++GA+K + T + +++
Sbjct: 68 APDK-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 124 bits (314), Expect = 6e-34
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
+ A G + V + + +V + G PL AA G +E+ LL KGAD+N
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 241 APPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
AP + T L A +GH V+LLLSKGA VK G + N ++++
Sbjct: 68 AP----DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 122 bits (308), Expect = 4e-33
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLL 268
M A G ++ + + KG DVN L AAD G +E LL
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNR------TLEGGRKPLHYAADCGQLEILEFLL 60
Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
KGA + +K +PL A GH+S V+LL GAD + ++ A +
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118
Score = 120 bits (304), Expect = 1e-32
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
D A G + V+ + +G + PL AA G + I++ LL GA+IN
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
+ K I+PL+ A GH + VKLLL G+D + + TA Q ++
Sbjct: 68 AP--DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALL 122
Score = 99.4 bits (249), Expect = 4e-25
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
D A G V+ ++KG V + G PL AA+ G L ++E L GADI+
Sbjct: 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+ D ++ L++A +GHV V+ +++ A
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 96.3 bits (241), Expect = 6e-24
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV+ E L A G E++E LL +GADI DK TPL+ A GH V
Sbjct: 32 DVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK 90
Query: 62 ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVE 95
+LL+ AD + D T + +++
Sbjct: 91 LLLSKGADKTVK---GPDGLTAFEATDNQAIKALLQ 123
Score = 55.9 bits (136), Expect = 7e-10
Identities = 9/60 (15%), Positives = 19/60 (31%)
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ A G L V+ G D++ L A G ++ + +++
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 130 bits (329), Expect = 2e-34
Identities = 47/297 (15%), Positives = 92/297 (30%), Gaps = 75/297 (25%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKK----GFTPLILAA---TAGHDKVVDILLN 65
++ G E L+ LL+ + + + G T L A +AG + + ILL+
Sbjct: 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
E + T L +A +
Sbjct: 71 IAEKTGNMREFIN-----------------------SPFRDVYYRGQTALHIAIERRCKH 107
Query: 126 IIKLLLTHGAEINSRT------------GSKLGISPLMLAAMNGHTAAVKLLLDMGS--- 170
++LL+ GA+++++ G PL LAA V L + G
Sbjct: 108 YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167
Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
D+ Q ++ NT L H +V++ + + N + ++
Sbjct: 168 DLRRQ-DSRGNTVL--------HALVAIADNTRENTK----------------FVTKMYD 202
Query: 231 VLLDKGADVNAPPVPSSRD-----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
+LL K A + + + L +AA G + ++ + + +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 100 bits (251), Expect = 6e-24
Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 37/190 (19%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+ TAL +A + VELL+ +GAD+ + + F +
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF---- 139
Query: 62 ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD---YTPLSLA 118
+ PLSLA + +V L G + D T L
Sbjct: 140 ----------------GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183
Query: 119 ASGG---------YVNIIKLLLTHGAEINSRTGSKL-----GISPLMLAAMNGHTAAVKL 164
+ + LLL A++ T + G+SPLM+AA G +
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243
Query: 165 LLDMGSDINA 174
++ A
Sbjct: 244 IIRREIADAA 253
Score = 70.6 bits (173), Expect = 1e-13
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 20/124 (16%)
Query: 215 TPLMEAASGG----YVEVGRVLLDKGADVNAPPVPSSRD--TALTIAA---DKGHCRFVE 265
L + S G + LL + T L A G +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 266 LLLSKG-----------AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
+LL + +G + L +A VELL + GAD+ +Q +
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 315 VSCL 318
Sbjct: 127 FFQP 130
Score = 39.4 bits (92), Expect = 0.002
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 2 DVDSETESNHD--TALTLACAGGHEELVELLLSRGADIEHRDK 42
D + E N+D + L +A G + + ++ R
Sbjct: 214 DTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 120 bits (304), Expect = 2e-32
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 28 ELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87
G+D+ L+ AA AG D V IL+ + AD+ A+ E TPL LA +
Sbjct: 5 HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATA 56
Query: 88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGI 147
G E+VE+LL GA+ + +TPL LAA G++ I ++LL HGA++N++ K G
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD--KFGK 114
Query: 148 SPLMLAAMNGHTAAVKLLL 166
+ ++ NG+ ++L
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133
Score = 120 bits (303), Expect = 3e-32
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
GS + ++ L A G+ + V +L+ A+V + + GLTPL A + G++E+
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62
Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
VLL GADVNA D T L +AA GH E+LL GA V ++K G +
Sbjct: 63 VEVLLKNGADVNA------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 285 LWLAANGGHLSVVELLCKH 303
++ G+ + E+L K
Sbjct: 117 FDISIGNGNEDLAEILQKL 135
Score = 118 bits (299), Expect = 1e-31
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 9 SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
S+ L A G ++ V +L++ GAD+ +D+ G TPL LA GH ++V++LL + A
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
D+ A TPL LA G E+ E+LL GA+ ++ T ++ G ++ +
Sbjct: 72 DVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 129 LLLTH 133
+L
Sbjct: 131 ILQKL 135
Score = 112 bits (284), Expect = 1e-29
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 100 RGANKEHRNVSD-YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
RG++ H + SD L AA G + +++L+ +GA++N++ + G++PL LA +GH
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD--EYGLTPLYLATAHGH 59
Query: 159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
V++LL G+D+NA T L LA F G E+ +LL A+V + K G T
Sbjct: 60 LEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 219 EAASGGYVEVGRVLL 233
+ G ++ +L
Sbjct: 119 ISIGNGNEDLAEILQ 133
Score = 110 bits (279), Expect = 5e-29
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK 270
L+EAA G + R+L+ GADVNA +D T L +A GH VE+LL
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNA------KDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
GA V + G +PL LAA GHL + E+L KHGAD+++QD + + G+
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 331 RWMVNH 336
+
Sbjct: 130 EILQKL 135
Score = 92.8 bits (232), Expect = 1e-22
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
+ T L LA A GH E+VE+LL GAD+ D GFTPL LAA GH ++ ++LL
Sbjct: 42 AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 66 HKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
H AD+ AQ + T ++ G ++ E+L
Sbjct: 102 HGADVNAQDK-FGKTAFDISIGNGNEDLAEILQ 133
Score = 90.1 bits (225), Expect = 1e-21
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
G+D+ L AA G V +L++ GA V K++ G +PL+LA
Sbjct: 6 HHHHHGSDLG---------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
GHL +VE+L K+GAD+++ D + L A GH++ ++ H A
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 118 bits (298), Expect = 8e-32
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVE 265
+K G TPL AA G+ E + LL KGADVNA R T L +AA GH V+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKDGNTPLHLAAKNGHAEIVK 59
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
LLL+KGA V ++K GN+P LA GH +V+LL GAD++++
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 115 bits (291), Expect = 8e-31
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L A GH E V+ LLS+GAD+ R K G TPL LAA GH ++V +LL AD+ A
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPL 115
+ +KD TP LA G +E+V+LL +GA+ R+
Sbjct: 71 R---SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 112 bits (284), Expect = 6e-30
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 34 GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
G K G TPL AA GH + V LL+ AD+ A+S+ +TPL LA G E+
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEI 57
Query: 94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL 150
V+LLL +GA+ R+ TP LA G+ I+KLL GA++N+R+
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS--WGSSHHH 112
Score = 109 bits (276), Expect = 8e-29
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL A G E V+ LL++GA+ R+ TPL LAA G+ I+KLLL GA++N+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTAL 184
R+ K G +P LA NGH VKLL G+D+NA+ +
Sbjct: 71 RS--KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHH 112
Score = 109 bits (274), Expect = 2e-28
Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
G S K G +PL AA NGH VK LL G+D+NA+ + NT L LA G
Sbjct: 1 GHMWGS----KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHA 55
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
E+V LLL + A+V R+K G TP A G+ E+ ++L KGADVNA
Sbjct: 56 EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 108 bits (273), Expect = 2e-28
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
G ++ + NT L A G E V LL + A+V R+K G TPL AA G+ E+
Sbjct: 1 GHMWGSK---DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
Query: 229 GRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
++LL KGADVNA S+D T +A GH V+LL +KGA V ++ +
Sbjct: 58 VKLLLAKGADVNA----RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 95.9 bits (240), Expect = 6e-24
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 236 GADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
G S+D T L AA GH V+ LLSKGA V ++K GN+PL LAA GH
Sbjct: 1 GHMWG------SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54
Query: 294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
+V+LL GAD++++ + A + GH + V+ + A
Sbjct: 55 AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 114 bits (289), Expect = 9e-31
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 220 AASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK 279
+S + L+ +G+ + + L AA G V +L++ GA V K+K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
G++PL LAA GHL VV+LL + GAD+ +QD + + G+ +
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 111 bits (281), Expect = 1e-29
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
+ H L+ RG+ + L+ AA AG D V IL+ + AD+ A+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-N 56
Query: 78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
TPL LA G EVV+LLL GA+ ++ T ++ G ++ ++L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 104 bits (262), Expect = 5e-27
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 39/148 (26%)
Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
+ + H L+ GS + + + L A G+ + V +L+ A+V + K
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL AA G++EV V+LLL GA
Sbjct: 57 GSTPLHLAARNGHLEV-----------------------------------VKLLLEAGA 81
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELL 300
V ++K G + ++ + G+ + E+L
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 103 bits (260), Expect = 9e-27
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
+S + + L+ G+ + S L+ AA G V++L+ G+D+ A+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD-----LGKKLLEAARAGQDDEVRILMANGADVAAK-D 54
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
N +T L LA G EVV LLL+ A+V + K G T + G ++ +L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 92.6 bits (231), Expect = 7e-23
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
S+ L A G ++ V +L++ GAD+ +DK G TPL LAA GH +VV +LL
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELL 97
AD+ AQ + K T ++ G ++ E+L
Sbjct: 81 ADVXAQDKFGK-TAFDISIDNGNEDLAEIL 109
Score = 61.8 bits (151), Expect = 5e-12
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
DV + N T L LA GH E+V+LLL GAD+ +DK G T ++ G++ + +
Sbjct: 49 DVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Query: 62 IL 63
IL
Sbjct: 108 IL 109
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 121 bits (304), Expect = 1e-30
Identities = 51/295 (17%), Positives = 96/295 (32%), Gaps = 35/295 (11%)
Query: 4 DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPL-ILAATAGHDKVVDI 62
D+E + + L +E+ L + ++ ++ + +V D
Sbjct: 56 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115
Query: 63 LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122
N + ++ + +TPL S E+V+ L+ G+N+ + + + L A
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175
Query: 123 ----YVNIIKLLLTHGAEINSRTGSKLGISPL----MLAAMNGHTAAVKLLLDMGSDINA 174
LL + + + L + + M G +AA K LD+
Sbjct: 176 NNYDSGTFEALLDYLYPCLILED--SMNRTILHHIIITSGMTGCSAAAKYYLDILM---- 229
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
+V + + ++ +E +
Sbjct: 230 ------------------GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271
Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
+NA S+ DT L IAA G+ V+ LL GA + NK G P+ A
Sbjct: 272 IANMLNAQ--DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 109 bits (274), Expect = 2e-26
Identities = 44/296 (14%), Positives = 95/296 (32%), Gaps = 33/296 (11%)
Query: 25 ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL 84
++++ L S + + K L ++ L N ++ ++ + +
Sbjct: 44 KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103
Query: 85 ACSGGRYEVVELLLTRGAN-KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
+ EV + N + TPL S + ++K L+ HG+
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-- 161
Query: 144 KLGISPLMLAAMNGHTAAVK----LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
+G S L+ A + + LL + + + ++ T L H
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-DSMNRTIL--------H------ 206
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVG-RVLLDKGADVNAPPVPSSRD--TALTIAA 256
H T AA+ Y+++ ++ K
Sbjct: 207 --------HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258
Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
++L + ++ G++ L +AA G++S+V+ L +GAD +
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
Score = 108 bits (270), Expect = 5e-26
Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 37/230 (16%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDK--- 58
+++ + + +T L + + ELV+ L+ G++ + D G + L+ A + ++
Sbjct: 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181
Query: 59 -VVDILLNHKADMEAQSERTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYT 113
+L + +D T L + Y
Sbjct: 182 TFEALLDYLYPCLIL-----EDSMNRTILHHIII------------TSGMTGCSAAAKY- 223
Query: 114 PLSLAASGGYVNIIKLLLTHGAEINSRT--GSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
++ ++ + + + + L + +
Sbjct: 224 --------YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
+NAQ N +T L +A G +V LLD A+ K+GL P+ A
Sbjct: 276 LNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 97.8 bits (243), Expect = 2e-22
Identities = 33/248 (13%), Positives = 70/248 (28%), Gaps = 31/248 (12%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
L + L + NS G ++ + + ++
Sbjct: 65 AFLQRLLFPEIQEMPTSLNNDSSNRNSE-GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG----YVEV 228
N ++ + NT L E+V L+ +N + G + L++A
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 183
Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF------------VELLLSKGA 272
+L + D T L + ++ K
Sbjct: 184 EALLDYLYPCLIL------EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237
Query: 273 QVEVKNKKGNSPLWLAANGGH----LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
+ NG L ++L +++QD+ +CL A R G++
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297
Query: 329 AVRWMVNH 336
V ++++
Sbjct: 298 IVDALLDY 305
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 111 bits (281), Expect = 7e-30
Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G TPL AA G++EV ++LL+ GADVNA + T L +AA GH V+LLL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
V K+K G +PL LAA GHL VV+LL + GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 107 bits (271), Expect = 2e-28
Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
T L LA GH E+V+LLL GAD+ +DK G TPL LAA GH +VV +LL AD+ A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 73 QSERTKD--TPLSLACSGGRYEVVELLLTRGA 102
+ K+ TPL LA G EVV+LLL GA
Sbjct: 64 K---DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 102 bits (258), Expect = 1e-26
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
TPL LA G EVV+LLL GA+ ++ + TPL LAA G++ ++KLLL GA++N+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
+ K G +PL LAA NGH VKLLL+ G
Sbjct: 64 KD--KNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 101 bits (254), Expect = 4e-26
Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
G +PL LAA NGH VKLLL+ G+D+NA+ + N T L LA G EVV LLL+ A+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
V + K G TPL AA G++EV ++LL+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 99.4 bits (249), Expect = 2e-25
Identities = 38/87 (43%), Positives = 54/87 (62%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
T L +AA GH V+LLL GA V K+K G +PL LAA GHL VV+LL + GAD+++
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+D + L A R GH++ V+ ++
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 95.5 bits (239), Expect = 5e-24
Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
TPL LAA G++ ++KLLL GA++N++ K G +PL LAA NGH VKLLL+ G+D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
+NA+ + N T L LA G EVV LLL+ A
Sbjct: 61 VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 58.1 bits (142), Expect = 5e-11
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
G +PL LAA GHL VV+LL + GAD++++D + L A R GH++ V+ ++ A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Score = 36.2 bits (85), Expect = 0.003
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 10 NHDTALTLACAGGHEELVELLLSRGA 35
N T L LA GH E+V+LLL GA
Sbjct: 67 NGRTPLHLAARNGHLEVVKLLLEAGA 92
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 77.0 bits (189), Expect = 9e-16
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 1 MDVDSETESNHDTALTLACAGG---HEELVELLLSRGADIEHRDKKGFTPLILAATAGHD 57
+ +TAL LA +V+ L+ +++ + KG T L +
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218
Query: 58 KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK--EHRNV 109
+ + +LL KA +E +E + TPL +A ELL + + H +V
Sbjct: 219 ECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEELLTQALSGRFNSHVHV 271
Score = 68.9 bits (168), Expect = 4e-13
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Query: 233 LDKGADVNAPPVPSSRDTALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
+D + +TAL +A D+ V+ L+ ++ + KG++ L
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213
Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
+ ++LL + A I+ + + L A R H
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255
Score = 66.6 bits (162), Expect = 2e-12
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 18 ACAGGHEELVELLLSRGADIE------HRDKKGFTPLILAATAG---HDKVVDILLNHKA 68
A + + G D+ + + T L LA + +VD L+ +
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 69 DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
+++ Q+ + T L C E ++LLL A+ E N S TPL +A + + +
Sbjct: 197 NLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255
Query: 129 LLL 131
LL
Sbjct: 256 LLT 258
Score = 64.6 bits (157), Expect = 1e-11
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 80 TPLSLACSGG---RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
T L LA +V+ L+ N + + T L +KLLL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
I ++ G +PL +A H +LL
Sbjct: 231 IEIA--NESGETPLDIAKRLKHEHCEELLT 258
Score = 60.8 bits (147), Expect = 3e-10
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 8/158 (5%)
Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
A K D + +++ E + + V AN +T L + +
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179
Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
+ + L+ +++ TAL + ++LLL A +E+ N+
Sbjct: 180 VDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237
Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
G +PL +A H ELL + R S +
Sbjct: 238 GETPLDIAKRLKHEHCEELL------TQALSGRFNSHV 269
Score = 58.1 bits (140), Expect = 2e-09
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Query: 133 HGAEINSRTGSKLGISPLMLAAMNG---HTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
+I G + + L LA + V L+ +++ Q +TAL C
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCL 214
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
E + LLL KA++E ++G TPL A + +L
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 38.8 bits (90), Expect = 0.003
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 280 KGNSPLWLA---ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
+ L LA + L +V+ L ++ ++D Q + + L + + ++ ++
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 337 VA 338
A
Sbjct: 228 KA 229
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 70.4 bits (172), Expect = 2e-13
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 4 DSETESNHDTALTLACAGGHE---ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
+ ++ + L LA ++ LV+ ++ G ++ + G T L AA +
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242
Query: 61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
+LL +A + +E + T L +A E ELL A
Sbjct: 243 KLLLKGRALVGTVNEAGE-TALDIARKKHHKECEELLEQAQAGT 285
Score = 63.9 bits (155), Expect = 3e-11
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 232 LLDKGADVNAPP----VPSSRDTALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
G D P + + L +A A++ V+ ++ G ++ K GN+
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
L AA ++LL K A + + + + L A +K H +
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Score = 62.7 bits (152), Expect = 7e-11
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 29 LLLSRGADI------EHRDKKGFTPLILAATAGHDK---VVDILLNHKADMEAQSERTKD 79
+ G D L LA + +VD ++ + ++A++ +
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-GN 227
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
T L A + + ++LLL A N + T L +A + +LL
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 61.5 bits (149), Expect = 1e-10
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 103 NKEHRNVSDYTPLSLA---ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
+ L LA A+ + ++ ++ +G ++++ G + L AA+
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQP 239
Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
+KLLL + + E TAL +A + E LL +A
Sbjct: 240 DCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKECEELLEQAQAG 284
Score = 60.8 bits (147), Expect = 3e-10
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
+D++ ++ +TAL A + ++LLL A + ++ G T L +A H + +
Sbjct: 218 HLDAKA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 62 ILLNHKAD 69
+L +A
Sbjct: 277 LLEQAQAG 284
Score = 59.2 bits (143), Expect = 1e-09
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 67 KADMEAQSERTKDTPLSLACS---GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
+ ++ ++ L LA +V+ ++ G + + + T L AA
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
+ +KLLL A + + + G + L +A H +LL
Sbjct: 239 PDCLKLLLKGRALVGTVNEA--GETALDIARKKHHKECEELL 278
Score = 55.8 bits (134), Expect = 1e-08
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
L ++ A+ + + ++ G ++A + +TAL AA ++LLL
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELL 300
A V N+ G + L +A H ELL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 39.2 bits (91), Expect = 0.002
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 280 KGNSPLWLA---ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
L LA AN L +V+ + ++G +D++ + L A ++ ++
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248
Query: 337 VA 338
A
Sbjct: 249 RA 250
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 71.0 bits (173), Expect = 2e-13
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 3/137 (2%)
Query: 5 SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
++ T L A A E LL GA++ D G PL A GH + + L
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288
Query: 65 NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
AD+ A+ + PL++A ++V LL R A + +
Sbjct: 289 KRGADLGARDSEGR-DPLTIAMETANADIVTLL--RLAKMREAEAAQGQAGDETYLDIFR 345
Query: 125 NIIKLLLTHGAEINSRT 141
+ + +++ R+
Sbjct: 346 DFSLMASDDPEKLSRRS 362
Score = 69.0 bits (168), Expect = 8e-13
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
+ + + L HGA++N G + +PL+ A A + LL G+++N
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263
Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
++ L A G + L L R A++ R G PL A ++ +L
Sbjct: 264 A-DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 67.9 bits (165), Expect = 2e-12
Identities = 30/114 (26%), Positives = 39/114 (34%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
G + + L GADVN T L A E LL GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
V + G PL A GH + L K GAD+ ++D+ L A +
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Score = 62.5 bits (151), Expect = 1e-10
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 51 AATAGHDKVVDILLNHKAD-MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNV 109
+ + L H AD + TPL A + E LL GAN +
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 110 SDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
+ PL A G+ + L L GA++ +R G PL +A + V LL
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGAR--DSEGRDPLTIAMETANADIVTLLRL 322
Score = 61.7 bits (149), Expect = 2e-10
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
N + + TPL++A + + LL GA+VN S+ L A GH
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD--SAGRGPLHHATILGHTGLA 284
Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
L L +GA + ++ +G PL +A + +V LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 58.6 bits (141), Expect = 2e-09
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRN-TALTLACFQGRHEVVSLLLDRKANVEHRAK 211
+ + L G+D+N N T L A LL ANV
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266
Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
G PL A G+ + + L +GAD+ A S LTIA + + V LL
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGA--RDSEGRDPLTIAMETANADIVTLLR 321
Score = 48.6 bits (115), Expect = 3e-06
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 5/142 (3%)
Query: 245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN--KKGNSPLWLAANGGHLSVVELLCK 302
+ + L+ GA V N + +PL A L E L +
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKC 362
+GA+++ D+ L A GH + A + R +
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR---DPLTIAMETAN 313
Query: 363 QECSMVIRVAKNQQAERANKNA 384
+ ++R+AK ++AE A A
Sbjct: 314 ADIVTLLRLAKMREAEAAQGQA 335
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 64.7 bits (158), Expect = 6e-11
Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 7/149 (4%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
Q R K + + + A + ++E + ++E K +K+ A
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIA-VL 887
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
++ R+ K + K+ + E +S A QA+ + + + E +
Sbjct: 888 LQKYNRILKKLENWATTKSVYLGSNET------GDSITAVQAKLKNLEAFDGECQSLEGQ 941
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ + E+ + E +
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDT 970
Score = 59.7 bits (145), Expect = 2e-09
Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 8/155 (5%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ K + + + L + + + + R+ + + + E
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK----REPFVAPAGLTPNEIDSTWSALE 864
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
+ E + + K +LL++ R K A +
Sbjct: 865 KAEQEHAEALRIELKRQKKIAVLLQKY----NRILKKLENWATTKSVYLGSNETGDSITA 920
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
+ + E + E Q +EG+ + +
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 955
Score = 52.7 bits (127), Expect = 3e-07
Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 12/163 (7%)
Query: 368 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK--------KQKKLEK 419
+ R + Q + + + D + + A + K+ K + + +
Sbjct: 772 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYN 831
Query: 420 KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM----EKWREESKRAAQARKRE 475
+ + + + E + A E + + + E + + K+ A ++
Sbjct: 832 SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 891
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ KKLE + E + + + + + +E E
Sbjct: 892 NRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934
Score = 47.4 bits (113), Expect = 1e-05
Identities = 11/146 (7%), Positives = 40/146 (27%), Gaps = 18/146 (12%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
K++ Q+ + +++ +N ++ + + + A + + + +
Sbjct: 882 KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQ 941
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
+ E + EL K +++ +
Sbjct: 942 SNSDLLSILAQLTELNYN------------------GVPELTERKDTFFAQQWTGVKSSA 983
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ L + E+ + +E+
Sbjct: 984 ETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 45.0 bits (107), Expect = 6e-05
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 33/159 (20%)
Query: 393 MEKWREE-----------SKRAAQARKRERKKQKKLEKKEEKR----------------- 424
+E+ RE+ KRA + + KQ LE ++
Sbjct: 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 813
Query: 425 -KAMEEEEEVIRVAKN----QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
+ + +EV + Q R K + + + A + ++E +
Sbjct: 814 TEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 873
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
++E K +K+ A+ ++ +++
Sbjct: 874 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN 912
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 60.3 bits (146), Expect = 9e-10
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 4 DSETESNHDTALTLACA---GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
+ ++ + L LA LV+ ++ G ++ + G T L AA +
Sbjct: 164 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 223
Query: 61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
+LL +A + +E + L +A E ELL
Sbjct: 224 KLLLKGRALVGTVNEAGET-ALDIARKKHHKECEELL 259
Score = 58.4 bits (141), Expect = 3e-09
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 232 LLDKGADVNAP-PVPSSRD---TALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
G D P P P ++ L +A A++ V+ ++ G ++ K GN+
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
L AA ++LL K A + + + + L A +K H +
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
Score = 57.6 bits (139), Expect = 6e-09
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 29 LLLSRGADI------EHRDKKGFTPLILAATAGHDK---VVDILLNHKADMEAQSERTKD 79
+ G D L LA + +VD ++ + ++A++ +
Sbjct: 150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-GN 208
Query: 80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
T L A + + ++LLL A N + T L +A + +LL
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 55.7 bits (134), Expect = 3e-08
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 8/132 (6%)
Query: 129 LLLTHGAEIN----SRTGSKLGISPLMLA---AMNGHTAAVKLLLDMGSDINAQIETNRN 181
+G + L LA A V ++ G ++A+ + N
Sbjct: 150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGN 208
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
TAL A + + + LLL +A V + G T L A + E +L A A
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268
Query: 242 PPVPSSRDTALT 253
P+ ++
Sbjct: 269 FPLHVDYSWVIS 280
Score = 52.6 bits (126), Expect = 2e-07
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 48 LILAATAGHDKVVDILLNHKADM-----EAQSERTKDTPLSLAC---SGGRYEVVELLLT 99
L A V + D ++ ++ L LA + +V+ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
G + + + T L AA + +KLLL A T ++ G + L +A H
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--LVGTVNEAGETALDIARKKHHK 253
Query: 160 AAVKLL 165
+LL
Sbjct: 254 ECEELL 259
Score = 50.3 bits (120), Expect = 1e-06
Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 37/156 (23%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQI-----ETNRNTALTLACFQGRHEVVSLLLDRKA 204
L A N +V G D + + L LA
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV---------------- 179
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
+ A+ + + ++ G ++A + +TAL AA +
Sbjct: 180 --------------KVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCL 223
Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
+LLL A V N+ G + L +A H ELL
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 42.2 bits (99), Expect = 4e-04
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 9/152 (5%)
Query: 278 NKKGNSPLWLA---ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
L LA AN L +V+ + ++G +D++ + L A ++ ++
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227
Query: 335 NHVA-QFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQ-AERANKNANILLEELD 392
A ++ + K +EC ++ A+ A + + + ++ +
Sbjct: 228 KGRALVGTVNEAGETALDIARKK----HHKECEELLEQAQAGTFAFPLHVDYSWVISTEN 283
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
+ S +A
Sbjct: 284 LSSDSSLSSPSALNSLSSPSALNSTASNSPGI 315
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 60.6 bits (146), Expect = 1e-09
Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 10/222 (4%)
Query: 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDK 356
V CK A V+ F K + +R V + D+
Sbjct: 568 VGDACKAIASRVRGAVASVT--FDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQ 625
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
+ + +V+ Q E ++ L+ + A K E ++ ++
Sbjct: 626 AVFP---QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQ 682
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
+ +R+ + ++ E + K A + + E++ A+A + E
Sbjct: 683 EARGRLERQKILDQSEAEKARKELLELEAMS-----MAVESTGNAKAEAESRAEAARIEG 737
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ K + + A+E E E E +V+E+E + E
Sbjct: 738 EGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779
Score = 58.7 bits (141), Expect = 4e-09
Identities = 28/158 (17%), Positives = 51/158 (32%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
E+ QE + + +Q R +L++ + EK R+E
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
+ E + +A E E + +A+ LE + + E AQ
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVS 782
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
K Q+ + +K K M E ++ EM +
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Score = 35.9 bits (82), Expect = 0.039
Identities = 16/125 (12%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
E + + ++ A++Q N ++ +E + ++ A Q + +
Sbjct: 606 FEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEIT 665
Query: 481 KLEKKEEKRKAMEE-EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGID 539
++ + + E+E +E Q++ + E+ + + G++ +
Sbjct: 666 TNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 540 ANSQA 544
A S+A
Sbjct: 726 AESRA 730
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 56.7 bits (136), Expect = 2e-09
Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELD------MEKWREESKRAAQARKRERKK 478
+ +E E IR + +Q +R L+ELD ++WRE++K+ + + + +
Sbjct: 78 DRLTQEPESIRKWREEQRKR--------LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 479 QKKLEKKEEKRKAMEEE--EEEEEEV 502
Q +EK + + ++ ++ + ++
Sbjct: 130 Q--VEKNKINNRIADKAFYQQPDADI 153
Score = 40.9 bits (95), Expect = 4e-04
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 360 DKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 419
D+ + IR + +Q +R L+ELD E + +A+K + ++ +
Sbjct: 78 DRLTQEPESIRKWREEQRKR--------LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 420 KEEKRKAM--EEEEEVIR 435
+ EK K ++ +
Sbjct: 130 QVEKNKINNRIADKAFYQ 147
Score = 36.7 bits (84), Expect = 0.011
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-KEEKRKAME 428
R+ + A + + ++WRE++K+ + + + +Q +EK K R A +
Sbjct: 97 RLQELDAASKVME-----------QEWREKAKKDLEEWNQRQSEQ--VEKNKINNRIADK 143
Query: 429 E-----EEEVI 434
+ ++I
Sbjct: 144 AFYQQPDADII 154
Score = 32.4 bits (73), Expect = 0.25
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 483 EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+E + EE+ + ++ + ++ME+E E
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE 114
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 57.5 bits (139), Expect = 1e-08
Identities = 24/152 (15%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
Q+ E K+ + + +K E K Q + +++ L++K + + E E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER--KKQKKLEKKEEKRKA 491
+RV + + + + + ++ E+ R + +A + + +++ +++LE++E R+
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
++ E+ + +++++E +++ E + N +
Sbjct: 974 LQLEKVTADG-KIKKMEDDILIMEDQNNKLTK 1004
Score = 56.8 bits (137), Expect = 1e-08
Identities = 26/162 (16%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEK-WREESKRAAQARKRERKKQ---KKLEKK-EEK 423
++ AE + ++ ++E+ E R + +R ++ Q KK++++ +
Sbjct: 901 LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Query: 424 RKAMEEEEEVIRVAKNQQAERANKNANILLEELDM--EKWREESKRAAQARKRERKKQKK 481
+ +EEEE + + ++ K + +++ + ++ + +K +R
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKK-MEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Query: 482 LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
L ++EEK K + + + + E + E+E + +EE ++
Sbjct: 1020 LAEEEEKAKNLTKLKNKHES-MISELEVRLKKEEKSRQELEK 1060
Score = 56.4 bits (136), Expect = 2e-08
Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 6/178 (3%)
Query: 345 EMTRYIQTVND-KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
EM + + KE K + + Q E N L E ++ EE +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
A+K+E ++ + E R EEE A+ ++ ++ + LEE + + +
Sbjct: 918 LAAKKQELEEILH---EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ ++ A + +K + + E++ + +E + EE V ++ + EEE + ++
Sbjct: 975 QLEK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLEE-RVSDLTTNLAEEEEKAKNL 1030
Score = 52.1 bits (125), Expect = 5e-07
Identities = 30/180 (16%), Positives = 78/180 (43%), Gaps = 13/180 (7%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
EL + +E + + K + E ++ + EE + + + K+ Q + + ++Q
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ- 963
Query: 416 KLEKKEEKRKAMEEE----EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
LE++E R+ ++ E + I+ ++ ++N + E +E+ +
Sbjct: 964 -LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 472 RKRE----RKKQKKLEKK-EEKRKAMEEEEEEEEEVE--VQEVEGEMMEEETEENDMHSS 524
+ + K + K E E +++EE+ +E+E +++EGE + + ++ +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Score = 51.8 bits (124), Expect = 6e-07
Identities = 23/166 (13%), Positives = 65/166 (39%), Gaps = 8/166 (4%)
Query: 355 DKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 414
++E+ K +E + +AE LE+ + E++ + +
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKE------LEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 415 KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 474
+ E + +E EE++ + + E ++ + E+ M++ + + + +
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 475 ERKK--QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R+K +K+ + +K ++ E++ E +++EE +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 51.0 bits (122), Expect = 1e-06
Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
R+ ++ + +++ ++ K +++ E Q+ + + N+L
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL---- 897
Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEMMEEE 515
EK + E++ A+A + + K ++ EE ME EEEEE + + E + M+++
Sbjct: 898 -QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 516 TEE 518
+
Sbjct: 957 MLD 959
Score = 45.6 bits (108), Expect = 5e-05
Identities = 26/161 (16%), Positives = 64/161 (39%), Gaps = 16/161 (9%)
Query: 372 AKNQQAERANKNANILLEELD-----MEKWREESKRAAQARKRERK---------KQKKL 417
K + + ++ EL+ EK R+E ++ + + E + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 418 EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
E K + K EE + + +++ +++ N I E + +E+ + AR + K
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144
Query: 478 KQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+++ L ++ E K E E+ + Q+ ++ ++
Sbjct: 1145 QKRDLSEELEALK--TELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 45.2 bits (107), Expect = 6e-05
Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
++L + I+ ++ ++N + E +E E E +K K
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE---ERVSDLTTNLAEEEEKAK 1028
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
L K + K ++M E E + ++ E++ + + +L+ E + ++ A+ + +
Sbjct: 1029 NLTKLKNKHESMISELE----VRLKKEEKSRQELEKIKRKLEGES-SDLHEQIAELQAQI 1083
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ + +L KKEE+ +A E+E + ++ E E+ +D+
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETS-QKNNALKKIRELESHISDL 1128
Score = 44.4 bits (105), Expect = 1e-04
Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 6/149 (4%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ + L K + ES + + +++++ + E ++ KRK E
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
++ QA+ A A + +E +++ + + KK ++LE +
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES----HIS 1126
Query: 492 MEEEEEEEEEVEVQEVEGEM--MEEETEE 518
+E+ E E+ + E + + EE E
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Score = 44.1 bits (104), Expect = 1e-04
Identities = 23/170 (13%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 356 KELLDKCQE--CSMVIRVAKNQQAERANKNANILLEEL--DMEKWREESKRAAQARKRER 411
K++ + + + A Q+ + A+ ++++ D+ +++ + K +
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN---NKLTKERK 1007
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
++++ EE+ + + KN+ E + L++ EK R+E ++ +
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKH-ESMISELEVRLKKE--EKSRQELEKIKRK 1064
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+ E + + + + A + + ++E E+Q + +E +++N+
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Score = 43.7 bits (103), Expect = 2e-04
Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 7/157 (4%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQAR----KRERKKQKKLEKKEEKRKAM 427
K Q + + + EE +K + K A + + + + K K + +
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQK-LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
EE + AE K N+ + E E + + ++ R++ +K+++K E
Sbjct: 1009 LEER--VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
+ E+ E + ++ E++ ++ ++E E +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Score = 39.4 bits (92), Expect = 0.004
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESK-------------RAAQARKRERKKQKKLEK 419
++ E + + + + EL + +++ R ++ KK+ +
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 420 KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
E ++E+ E + A +AE+ ++ + LE L E A Q R +
Sbjct: 1121 LESHISDLQEDLESEK-AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Query: 480 KKLEK 484
+K
Sbjct: 1180 DDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 55.5 bits (134), Expect = 4e-08
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 4/152 (2%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKW--REESKRAAQARKRERKKQKKLEKKEEKRKA 426
+R + A + L+ RE K +AR ER K+ + + + +
Sbjct: 874 VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
+ +E + K+ + N E + E + + + K + L+ E
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ--E 991
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
E K +E + + E + E + + ETE+
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Score = 54.3 bits (131), Expect = 8e-08
Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 6/174 (3%)
Query: 348 RYIQTVNDKELLDKCQECSMVIR---VAKNQQAERANKNANILLEELDMEKWREESKRAA 404
Y+ + + D ++R V Q + I+ + + R R
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 405 QA-RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
+A + ++ + K+E K+ +E + E ++E ++++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKS 946
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
++ + +KL E+ + EEE + V ++ E+ + E
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN-RVLSLQEEIAKLRKE 999
Score = 53.6 bits (129), Expect = 1e-07
Identities = 14/122 (11%), Positives = 44/122 (36%), Gaps = 4/122 (3%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
+R RKR + + + + + + + ++ K+ L + +
Sbjct: 826 QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885
Query: 461 WREESKRAAQARKRERKKQKKLE--KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ Q R +++L+ K E + ++ E ++ +++ ++E+ +E
Sbjct: 886 TLKAI-VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ-RKIDEQNKE 943
Query: 519 ND 520
Sbjct: 944 YK 945
Score = 52.8 bits (127), Expect = 3e-07
Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 1/131 (0%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
+ ++ A QA R + K + + K++ ++ V R K L
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
+ E K+ + + +K E K ++ + +E+ + E + + +M
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK-EYKSLLEKMNN 953
Query: 514 EETEENDMHSS 524
E +
Sbjct: 954 LEITYSTETEK 964
Score = 50.9 bits (122), Expect = 1e-06
Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 14/188 (7%)
Query: 348 RYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDM--EKWREESKRAAQ 405
RY++ + + I + K Q+ K + + R R
Sbjct: 799 RYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY 858
Query: 406 ARKRERKKQKKLEKK----------EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
K ++K KA+ + R ++ + K +E
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
E+K Q +++ ++ K+ + EK +E E E +++ + E
Sbjct: 919 YKKLHIGLENKIM-QLQRKIDEQNKEYKSLLEKMNNLEITYSTETE-KLRSDVERLRMSE 976
Query: 516 TEENDMHS 523
E + +
Sbjct: 977 EEAKNATN 984
Score = 50.1 bits (120), Expect = 2e-06
Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARK----RERKKQKKLEKKEEKRKAME 428
N + + + + + + EE+K A K +K+L + + ++K +E
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
E + + Q + + ++ +EE R + +E + + + EE
Sbjct: 1012 EWADKYKHETEQLVSELKE------QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Query: 489 RKAMEEEEEEEEEVEVQ 505
++ E + +E + Q
Sbjct: 1066 KQL--ELDLNDERLRYQ 1080
Score = 49.7 bits (119), Expect = 2e-06
Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 5/139 (3%)
Query: 375 QQAERANKNANILLEELDMEKWREESK---RAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ + K+ + L++ E K + R E + + + ++ + +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 432 EVIR--VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
+ + + + E E+L E + + + + R+ + ++ E
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Query: 490 KAMEEEEEEEEEVEVQEVE 508
+ EE ++ E+++ +
Sbjct: 1058 EKKLVEETKQLELDLNDER 1076
Score = 49.0 bits (117), Expect = 4e-06
Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 8/153 (5%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
+L K E + K+ + N E + E + + + K +
Sbjct: 931 MQLQRKIDE---QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-----MEKWREESKRAAQ 470
L+++ K + + + + + A++ L+ EL ++ +EE R
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+ +E + + + EE ++ + +E +
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 47.8 bits (114), Expect = 1e-05
Identities = 20/169 (11%), Positives = 57/169 (33%), Gaps = 7/169 (4%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
K+L + + ++ + + I + + + E+ E +K +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 416 KLEKK-----EEKRKAMEEEEEVIRVAKNQQAERANKNANI-LLEELDMEKWREESKRAA 469
++ EE + A + + E +EE + E + +
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ +++ + + E+ + +E E E ++ E E + +E + +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE-ETKQLELDLND 1074
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 51.5 bits (122), Expect = 5e-07
Identities = 21/172 (12%), Positives = 66/172 (38%)
Query: 344 QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
+ ++ + + + K E + + ++ +
Sbjct: 416 SPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI 475
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
Q + +K+K++E + K ++ + +++ + + + + E L +
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
E+ R +++ER KL+++E+ K ++E + E+Q+++ +M +
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 42.2 bits (98), Expect = 4e-04
Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 13/187 (6%)
Query: 344 QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
++ N + D+C + E K ++
Sbjct: 389 EKKRDDFCKQNQEASSDRCSG----LLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK 444
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE-ELDMEKWR 462
+ + RK + E + K+ E + I E+ + ++ E +
Sbjct: 445 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAK 504
Query: 463 EESKRAAQARKRERKKQKKLE--------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
+ + + +K++ + K E R + +E+E +++QE E + E
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564
Query: 515 ETEENDM 521
+E+ +
Sbjct: 565 FQKESRI 571
Score = 37.6 bits (86), Expect = 0.011
Identities = 12/106 (11%), Positives = 37/106 (34%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
+ E+ + + E + + E+K++ E ++ + ME + +
Sbjct: 483 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL 542
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
+ + + LL+E ++ R + + R+++
Sbjct: 543 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
Score = 34.2 bits (77), Expect = 0.15
Identities = 27/199 (13%), Positives = 66/199 (33%), Gaps = 20/199 (10%)
Query: 339 QFPSDQEMTRYIQTVNDKELLDKC---QECSMVIRVAKNQQAERANKNANILLEELDMEK 395
P + + + + + K E M +V ++ + + + E +E
Sbjct: 308 DLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEV 367
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI---- 451
+ S + +++ +LEKK + +E R + Q + +
Sbjct: 368 FIRSSFKDVD-HLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGI 426
Query: 452 ------------LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
L++L + + E K + + K + + + E+E
Sbjct: 427 YSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKE 486
Query: 500 EEVEVQEVEGEMMEEETEE 518
+E+EV+ V+ E + +
Sbjct: 487 KEIEVERVKAESAQASAKM 505
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 74/433 (17%), Positives = 123/433 (28%), Gaps = 153/433 (35%)
Query: 3 VDSETESNHDTALTLACAGGH-----------------EELVELLLSRGADIEHRDKKGF 45
+ ++AL A G+ EEL +L ++
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL---------YQTYHVL 183
Query: 46 -TPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
LI + L+ +E+ + G ++E L N
Sbjct: 184 VGDLIKFSAE--------TLSELIRTTLDAEK--------VFTQG-LNILEWL----ENP 222
Query: 105 EHRNVSDYT---PLS-----LAASGGYVNIIKLL-LTHGAEINSRTGSKLGISPLMLAAM 155
+ DY P+S + YV KLL T G E+ S G S ++ A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTA- 280
Query: 156 NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG-R-HEVV-------SLLLDRKANV 206
A+ +D + A+T+ F G R +E S+L D N
Sbjct: 281 ----VAIAE-----TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 207 EHRAKTGL-TPLMEAASGGYVEVGRVLLDKGAD-VNAPPVPSSRDT--ALTIAADK---- 258
E G+ +P M + S + + + + N+ +P+ + +L A
Sbjct: 332 E-----GVPSP-MLSISN----LTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVS 380
Query: 259 GH----CRFVELLLSKGA-----QVEV-----KNKKGN----------SPL--------- 285
G L A Q + K K N S L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 286 -WLAANGGHLSVVELLC--KH---GADIDSQDN----RKVSCLMAAFRKGHVKAVRWM-- 333
L N + ++ G+D+ R V C++ V+W
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII-------RLPVKWETT 493
Query: 334 ----VNHVAQF-P 341
H+ F P
Sbjct: 494 TQFKATHILDFGP 506
Score = 47.7 bits (113), Expect = 1e-05
Identities = 50/298 (16%), Positives = 83/298 (27%), Gaps = 109/298 (36%)
Query: 35 ADIEHRDKKGFT--------PLILAATAG-------HDKVVDILLNHKADMEAQSER--- 76
AD +D GF+ P+ L G + ++ D + ++E+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYT-PLSLAASGGYVNIIKLLLTHGA 135
+ + E L T+ +T P +K
Sbjct: 1709 EINEHSTSYTFRS--EKGLLSATQ-----------FTQPALTLMEKAAFEDLK------- 1748
Query: 136 EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
G+ P A GH+ L G E AL A V
Sbjct: 1749 --------SKGLIPAD-ATFAGHS------L--G-------E---YAAL--ASLAD---V 1776
Query: 196 VSL-----LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
+S+ + V +R T + A E+GR A +N P
Sbjct: 1777 MSIESLVEV------VFYRGMT----MQVAVPRD--ELGRSNYGMIA-IN----PGRVAA 1819
Query: 251 ALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAAN-----GGHLSVVELLCK 302
+ + A + VE + + G VE+ N N N G L ++ +
Sbjct: 1820 SFSQEALQ---YVVERVGKRTGWLVEIVNY--NVE-----NQQYVAAGDLRALDTVTN 1867
Score = 45.4 bits (107), Expect = 6e-05
Identities = 79/487 (16%), Positives = 148/487 (30%), Gaps = 153/487 (31%)
Query: 70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
M+A S R PL+L S G E V LL V T AS +L
Sbjct: 1 MDAYSTR----PLTL--SHGSLEHV--LL----------VP--TASFFIAS-------QL 33
Query: 130 LLTHGAEINSRTGSKLG----ISPLMLAA--MNGHTAAVKLLLDMGSDINAQIETNRNTA 183
+ T +P L + G+ +++ + + + ++
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFL-GYVSSLV-------EPSKVGQFDQVLN 85
Query: 184 LTLACF-----QGR--HEVV-SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
L L F +G H + LL + + + L++ Y+ R++ +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE-----LIKN----YIT-ARIMAKR 135
Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLW---LAANGG 292
P ++AL A +G+ + V + G Q GN+ + L
Sbjct: 136 -------PFDKKSNSALFRAVGEGNAQLVAIF---GGQ-------GNTDDYFEELR---- 174
Query: 293 HL-----SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQ--- 344
L +V L K A+ S+ R F +G + + W+ + + P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWL-ENPSNTPDKDYLL 232
Query: 345 ------------EMTRYIQT-----VNDKELLDKCQECSMVIR-------VAKNQQAERA 380
++ Y+ T EL + + + +A+ E
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 381 NKNANILLEELDMEKW---REESKRAA-QARKRERKKQKKLEKKEEKRKAM--------E 428
+ + L + R A + LE E M E
Sbjct: 293 FVSVRKAITVL---FFIGVR--CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 429 EEEEVIR-----VAKNQQAERANKNA---NIL------LEELDMEKWREESKRAA--QAR 472
+ ++ + + +Q E + N ++ L L++ R+ + Q+R
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-RKAKAPSGLDQSR 406
Query: 473 K--RERK 477
ERK
Sbjct: 407 IPFSERK 413
Score = 44.7 bits (105), Expect = 1e-04
Identities = 35/224 (15%), Positives = 75/224 (33%), Gaps = 45/224 (20%)
Query: 23 HEELVELLLSRGADIEHRDKKGFTPLILAATA---GHDKVVDILLNHKADMEAQSERTKD 79
E ++ D + + +K F + +T+ +K LL+ T+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG---LLS----------ATQF 1731
Query: 80 T-PLSLACSGGRYEVVELLLTRGANKE------HRNVS--DYTPLSLAASGGYVNI---I 127
T P E L ++G H S +Y +LA+ ++I +
Sbjct: 1732 TQPALTLME---KAAFEDLKSKGLIPADATFAGH---SLGEYA--ALASLADVMSIESLV 1783
Query: 128 KLLLTHG-AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL 186
+++ G + +LG S + A+N A + + ++ + +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 187 ACFQGRHE--VVS---LLLDRKANVEHRAKTG---LTPLMEAAS 222
+ ++ V + LD NV + K + L ++ S
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 39.3 bits (91), Expect = 0.004
Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 37/155 (23%)
Query: 13 TALTLACAG--GHEELVELLLSRG---ADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
AL + A E LVE++ RG RD+ G + + A +V
Sbjct: 1768 AALA-SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASF---- 1821
Query: 68 ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD--YTPLSLAASGGYVN 125
EA + + G +VE+ N NV + Y A+G
Sbjct: 1822 -SQEALQYVVE----RVGKRTG--WLVEI-----VNY---NVENQQY-----VAAGDLRA 1861
Query: 126 IIKL--LLTHGAEINSRTGSKLGISPLMLAAMNGH 158
+ + +L ++ +L S L L + GH
Sbjct: 1862 LDTVTNVLNF-IKLQKIDIIELQKS-LSLEEVEGH 1894
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 43.4 bits (102), Expect = 2e-04
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 26/147 (17%)
Query: 359 LDKCQECSMVIRVAKNQ------QAERANKNANILLEELDMEKWREESKRAAQARKRERK 412
L K ++ ++ + + + N+ AN L+++ ++ E K+ + +
Sbjct: 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985
Query: 413 KQKKLEKKEEKRKAMEEEEEVIRV-AKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
+ E +K KA + E+ ++ E+ AN L +
Sbjct: 1986 DVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQ--------------- 2030
Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEE 498
+ + E+ +EE
Sbjct: 2031 ----DEIVATITALEKSIATYKEEYAT 2053
Score = 38.3 bits (89), Expect = 0.008
Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 7/146 (4%)
Query: 375 QQAERANKNANILLEELD-MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
++ L L + + A + ++ + ++ + +++ A E + ++
Sbjct: 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ-AAEIKQKDARELQVQL 1985
Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
K ++ A++ E + Q + + K ++ A+E
Sbjct: 1986 DVRNKEIAVQKVKAYADLEKAEPTGPL----REEVEQLENAANELKLKQDEIVATITALE 2041
Query: 494 EEEEE-EEEVEVQEVEGEMMEEETEE 518
+ +EE E E ++ E+ +
Sbjct: 2042 KSIATYKEEYATLIRETEQIKTESSK 2067
Score = 35.3 bits (81), Expect = 0.077
Identities = 13/100 (13%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRERKKQ 479
EKR +EEE+ + + + + L L + + A + ++ +
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRD-TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
++ + +++ A E + + + + V+ + E+
Sbjct: 1968 QQ-AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 41.2 bits (97), Expect = 5e-04
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
LEK + E ++ A A I+ + K ++ + E
Sbjct: 176 LEKLVDHHPEGLSAREAVKQA-----------AKIIYLAHEDNKEKDFELEISWCSLSET 224
Query: 477 KKQKKLEKKEEKRKAMEE-EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
K K + ++A++ ++E + + E + + + +EN ++ +EGD
Sbjct: 225 NGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGD 284
Query: 536 SGID 539
++
Sbjct: 285 IHLE 288
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 41.1 bits (96), Expect = 0.001
Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 9/142 (6%)
Query: 380 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN 439
NK N +++EL+ + +K + + + + EE+EE
Sbjct: 621 TNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTE 680
Query: 440 QQAERANKNANILLEELDMEKWR--EESKRAAQARKRERKKQ-KKLEKKEEKRKAMEEEE 496
+ L M W +E + +K+E++ + + L K K + +
Sbjct: 681 NVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLK 740
Query: 497 EEEEEVEVQEVEGEMMEEETEE 518
E + E ++ + E
Sbjct: 741 AFEVGYQ------EFLQRDAEA 756
Score = 31.9 bits (72), Expect = 0.69
Identities = 15/101 (14%), Positives = 40/101 (39%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
+++K E+ + + + + + I++ ++ NK N +++EL+ + +K
Sbjct: 586 QKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGK 645
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+ + + + EE+EE E + G
Sbjct: 646 PYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGP 686
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 40.5 bits (94), Expect = 0.001
Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 385 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
+ L E+ + E+ + R E ++ KLE E K + + + + + +A+R
Sbjct: 271 FVKLREMLIRVNMEDLREQTHTRHYELYRRCKLE--EMGFKDTDPDSKPFSLQETYEAKR 328
Query: 445 ANKNANILLEELDMEK-----WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
+ +E +M + +E+ +A K +K +L+K + K E++++
Sbjct: 329 NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Query: 500 EEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDS 536
+ EV + E ++ +GG + + +
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEK 425
Score = 33.6 bits (76), Expect = 0.17
Identities = 14/110 (12%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ +A+R + +E +M + + + + + +++ EK + +K ++E+
Sbjct: 321 QETYEAKRNEFLGELQKKEEEMRQ-MFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEK 379
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
+ + ++++ ++ + E + + +A ++ +R K+KK
Sbjct: 380 KKL---EDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 38.7 bits (89), Expect = 0.004
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR 467
++ RK+ K+ KE+KR Q RA E+L
Sbjct: 111 EKWRKEFKEQWMKEQKRMNEAV----------QALRRAQLQYVQRSEDLRARSQGSPEDS 160
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
A QA K+Q++ + E+ +A +E E + V+E + E
Sbjct: 161 APQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIA 210
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 39.3 bits (92), Expect = 0.004
Identities = 13/155 (8%), Positives = 43/155 (27%), Gaps = 29/155 (18%)
Query: 393 MEKWREESKRAA------QARKRERKKQKKLEKKEEKRKA-------------------M 427
+E+ R + + + ++ + + +
Sbjct: 750 LEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 809
Query: 428 EEEEEVIRVAKN----QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE 483
+ +EV + Q R K + + + A + ++E + ++E
Sbjct: 810 PKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE 869
Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
K +K+ A+ ++ +++
Sbjct: 870 LKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN 904
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 38.4 bits (89), Expect = 0.007
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ--QAERANKNANILL- 453
E+ + + ++ K+K ++ EE M E + Q +A + N +L
Sbjct: 104 DEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILT 163
Query: 454 -EELDMEKWREESKRAAQARKR-ERKKQKKLEKK-EEKRKAMEEEEE---EEEEVEVQEV 507
E+L M + ++ R E K+ K + + A+E E + EE E+ +
Sbjct: 164 EEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGM 223
Query: 508 EGEMMEEETEE 518
+++E +EE
Sbjct: 224 TADVLEAASEE 234
Score = 31.5 bits (71), Expect = 1.0
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
ER Q KL++ E+ E+ E++R+ N + + ++E+ A
Sbjct: 92 ERGIQAKLKELED-----EQRNELVRLKYNDKIKEK--------FGKELEEVYNFMNGEA 138
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
A + K+ L K + EE+ + ++ E+ E E M
Sbjct: 139 NAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVM 190
Score = 31.1 bits (70), Expect = 1.0
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 408 KRERKKQKKLEKKEEK--RKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREES 465
+ E++ + K +K K +E EEV + + +E + +
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAE-------IEDEKQFDILNKAV 155
Query: 466 KRAAQARKRERKKQKKLEK---KEEKRKAMEEE---EEEEEEVEVQ----EVEGEMMEEE 515
+ E + ++L KE + E +E ++++ EVE + M+EE
Sbjct: 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEE 215
Query: 516 TEE 518
+
Sbjct: 216 AIQ 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 37.5 bits (86), Expect = 0.011
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 458 MEKWREE--SKRAAQARKRERKKQKKLEKKEEKRKAMEE---EEEEEEEVEVQEVEGEM 511
E +R E + + + K + L +KE + + M+E + + ++++Q +G+
Sbjct: 296 YENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDG 354
Score = 32.5 bits (73), Expect = 0.37
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 393 MEKWREE--SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
E +R E + + + K + L +KE + + M+E ++ Q + + +
Sbjct: 296 YENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Query: 451 IL 452
L
Sbjct: 356 AL 357
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 37.6 bits (88), Expect = 0.012
Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 43/136 (31%)
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
++ R R L++ E+K + +E++ ++Q+ E+A
Sbjct: 382 GSKVRLRSFTTPPNLKELEQKLDEVRKEKD--AAVQSQEFEKA----------------- 422
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE-----------GEM 511
A R E++ ++++E ++ K E++ +E EV V ++ ++
Sbjct: 423 ------ASLRDTEQRLREQVEDTKKSWK--EKQGQENSEVTVDDIAMVVSSWTGVPVSKI 474
Query: 512 MEEETE-----ENDMH 522
+ ET+ EN +H
Sbjct: 475 AQTETDKLLNMENILH 490
Score = 30.6 bits (70), Expect = 1.5
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 388 LEELDMEK----WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
L+E+ EK +E ++AA R E++ ++++E ++ K + +E
Sbjct: 403 LDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 37.8 bits (88), Expect = 0.013
Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 413 KQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR 472
++++L EE R+ ++E + A EE+ + +
Sbjct: 148 EKRQLLTDEEYRELRYGKQETYPLPPGVDALVK------DGEEVVKGQELAPGVVSRLDG 201
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
+ +++ + K++ VE + + +
Sbjct: 202 VALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEI 241
Score = 32.1 bits (73), Expect = 0.63
Identities = 25/271 (9%), Positives = 63/271 (23%), Gaps = 36/271 (13%)
Query: 330 VRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLE 389
+++V + Q + D+E + + A E
Sbjct: 130 SKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVK------DGE 183
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ--------- 440
E+ + + + +++ + K++ + + +
Sbjct: 184 EVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEILA 243
Query: 441 ----------------QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ + + A ++L D + +K +
Sbjct: 244 ELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQP 303
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMME-----EETEENDMHSSGGGRGEGEEGDSGID 539
E + + + E EGE + E TE D EG
Sbjct: 304 LAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEA 363
Query: 540 ANSQASCSSNEVKTAAPNSRRKDKKKKKLDM 570
+ + E + A + +
Sbjct: 364 GDKIVAAIDPEEEVIAEAEGVVHLHEPASIL 394
Score = 30.5 bits (69), Expect = 1.9
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 34/234 (14%)
Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR-KGHVKAVRWMVNHVAQFPS 342
+L V G V KG ++ R + +
Sbjct: 267 GAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEE 326
Query: 343 DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWRE---- 398
+ E + E D + M + V + + E +K + E ++ E
Sbjct: 327 EGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVH 386
Query: 399 ESKRAAQARKRERKKQKKLEKKE-------------EKRKAMEEEEEVIRVAKNQQAERA 445
+ A+ + R + + + + K + + V + R
Sbjct: 387 LHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRV 446
Query: 446 NKNANI-----------LLEELDMEKW----REESKRA-AQARKRERKKQKKLE 483
++ +I LL+ELD+E EE K R + RK+ + +
Sbjct: 447 VESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVR 500
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 35.4 bits (81), Expect = 0.014
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 414 QKKLEKKEEKRKAME--------EEEEVIRVAKNQQAERANKNANILLEELDMEKWREES 465
QKKLE EE+RK E E+ E R + E N + E+L + +
Sbjct: 49 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE 108
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
R A + Q+K + EE RK E +EE
Sbjct: 109 NREAHLAAMLERLQEKDKHAEEVRKNKELKEEA 141
Score = 27.3 bits (60), Expect = 7.7
Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQ-AERANKNANILLEELDMEKWREESKRAA 469
R++ LE+ ++K +A EE + + AE+ ++ + ++ + +
Sbjct: 39 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 98
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
A+K E K+ + + ++E+++ EEV
Sbjct: 99 LAQKMESNKENREAHLAAMLERLQEKDKHAEEV 131
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 36.4 bits (83), Expect = 0.015
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ +E E IR + +Q +R L+ELD E + +A+K + ++ +
Sbjct: 93 DRLTQEPESIRKWREEQRKR--------LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 144
Query: 485 KEEKRKAMEEEEEEE 499
+ EK K ++
Sbjct: 145 QVEKNKINNRIADKA 159
Score = 31.8 bits (71), Expect = 0.46
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E + KWREE ++ Q K ++ +++ K+ E + + E+VE ++ + +
Sbjct: 98 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 157
Query: 514 EETEEN 519
+ +
Sbjct: 158 KAFYQQ 163
Score = 31.4 bits (70), Expect = 0.61
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE--EEEVIRVAKNQQAERAN 446
E + KWREE +R K + E +E+ +K +EE + + +V KN+ R
Sbjct: 98 EPESIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Query: 447 KNANILLEELDME 459
A ++ D +
Sbjct: 157 DKA--FYQQPDAD 167
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 37.1 bits (84), Expect = 0.018
Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 3/155 (1%)
Query: 368 VIRVAKNQQAERANKNANILLEEL--DMEKWREESK-RAAQARKRERKKQKKLEKKEEKR 424
+ +E + L+ + ++ W++E+ + +E K+ + +K +K
Sbjct: 85 AFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKP 144
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
A + +E + A + K A + + K E+ KQ L+
Sbjct: 145 WAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKT 204
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
KE+ K+++E ++ + + ++ EE
Sbjct: 205 KEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEK 239
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 36.1 bits (82), Expect = 0.024
Identities = 19/152 (12%), Positives = 56/152 (36%)
Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+ K+ +R ++ I + W + +K + K+ ++ + E+
Sbjct: 64 ELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEK 123
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
++ V + E N + + +E+++ +A + +K+ ++E +
Sbjct: 124 DKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQ 183
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
+A+EE + + + + +E E
Sbjct: 184 RAIEENNNWIKMAKEKLAQKMESNKENREAHF 215
Score = 33.8 bits (76), Expect = 0.12
Identities = 25/164 (15%), Positives = 58/164 (35%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
ELL E R + E N + E+L + + R A + Q+
Sbjct: 63 AELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQE 122
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
K + EE R+ EE ++ + ++ + + E + +++ R+
Sbjct: 123 KDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVI 182
Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
++ ++ + K ++ E + + M+E E++
Sbjct: 183 QRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKD 226
Score = 30.3 bits (67), Expect = 1.4
Identities = 24/150 (16%), Positives = 54/150 (36%)
Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
I++AK + A++ N R + K R+R ++ + ++ +
Sbjct: 91 IKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLA 150
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
++ E + + Q K+ E R + + + K +K+E +E
Sbjct: 151 QKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKEN 210
Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R+A E + + + E +E +E
Sbjct: 211 REAHFAAMLERLQEKDKHAEEVRKNKELKE 240
Score = 29.9 bits (66), Expect = 2.1
Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER--AN 446
E + EE ++ +A + +K+ ++E ++A+EE I++AK + A++ +N
Sbjct: 46 EIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESN 105
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
K +E+ +E+ K A + R+R ++ K +++ A + E +E +
Sbjct: 106 KENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEA 165
Query: 507 VEGEMMEEETEE 518
+ + E+ E
Sbjct: 166 ELLKHLAEKREH 177
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 36.8 bits (85), Expect = 0.024
Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 3/173 (1%)
Query: 349 YIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 408
Y + K L + + K + K A + L ++ ++ + A +
Sbjct: 795 YDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIR 854
Query: 409 RERKKQKKLEKKEEKRKAMEE---EEEVIRVAKNQQAERANKNANILLEELDMEKWREES 465
++++K+ EKKE+ ++ E ++++ + + + EE
Sbjct: 855 DWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEV 914
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
KR ++ R K+ + ++ + ++ + E E
Sbjct: 915 KRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEA 967
Score = 30.7 bits (69), Expect = 1.7
Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 15/157 (9%)
Query: 370 RVAKNQQAERANKNANILLE-ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
+ ++AE+ K+ + +++ + + + ++ + K E
Sbjct: 856 WQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMI---- 911
Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
EEV R+ ++ RA + L+ + + ++ A + E++ E
Sbjct: 912 --EEVKRLIRSSLGNRAKEG---LVVDFIQQTNLDDLPDKASIID-AFFTFAQREQQREA 965
Query: 489 RKAMEEEEEEEEE----VEVQEVEGEMMEEETEENDM 521
++EE E+ + E TE N+
Sbjct: 966 EALIKEENLNEDAAKRYIRTSLKREYATENGTELNET 1002
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 35.7 bits (81), Expect = 0.049
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 6/123 (4%)
Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
E + E + + E + ++ + + K E
Sbjct: 15 ENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEK------AEGV 68
Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
S + +A E + K EEK + E E + E E E T
Sbjct: 69 ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATN 128
Query: 518 END 520
+ D
Sbjct: 129 QGD 131
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 35.2 bits (80), Expect = 0.051
Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 381 NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ 440
+ L +++ E+ +K + E+ + K+++K +K K E E + +
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKK 369
Query: 441 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
E +K + + EK E+++ ++ + LEK ++K K
Sbjct: 370 NLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ---NSSRTLEKNKKKGK 416
Score = 34.0 bits (77), Expect = 0.14
Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 29/181 (16%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK 447
L + + ++ K E + +KL + + + + Q E +
Sbjct: 266 LRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERR 325
Query: 448 NANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
+++++ME E+ + K+++K +K K E E + E + +
Sbjct: 326 EHVAKMKKMEMEM--------------EQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNL 371
Query: 508 EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
E + E E + E+ + +A + N +T K+KKK K
Sbjct: 372 EAQHKELEEKRRQF----------EDEKANWEAQQRILEQQNSSRTL-----EKNKKKGK 416
Query: 568 L 568
+
Sbjct: 417 I 417
Score = 32.5 bits (73), Expect = 0.36
Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 347 TRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
+R + V + + + + + ER A + E++ME+ E K +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQ-VFEMKVKEKV 350
Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
+K + + + + E+ +K +E + + + + Q E+ ++
Sbjct: 351 QKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQ------------FEDEKANWEAQQRI 398
Query: 467 RAAQARKRERKKQKK 481
Q R +K KK
Sbjct: 399 LEQQNSSRTLEKNKK 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.052
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 35/157 (22%)
Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQE 364
+ D +D + + + K + H+ T + LL K QE
Sbjct: 31 DNFDCKDVQDM--PKSILSKEEID-------HIIMSKDAVSGTLRLFWT----LLSK-QE 76
Query: 365 CSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
MV + + E N L M + E ++ + + +++ +L +
Sbjct: 77 -EMVQKFVE----EVLRINYKFL-----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKW 461
V R+ + +A L EL K
Sbjct: 127 AKY----NVSRLQPYLKLRQA-------LLELRPAKN 152
Score = 32.9 bits (74), Expect = 0.36
Identities = 25/203 (12%), Positives = 61/203 (30%), Gaps = 65/203 (32%)
Query: 428 EEEEEVIRVAKNQQAER------ANKNANIL---LEELD-------MEKWREESKRAAQA 471
EE + +I +K ++ +EE+ M + E ++ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 472 RKRERKKQKKL---------------EKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET 516
+ +++ +L + + R+A+ E + + ++G +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDG-V----- 158
Query: 517 EENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAP------NSRRKDKKKKKLDM 570
G G+ + + + C S +V+ N + + + L+M
Sbjct: 159 ---------LGSGK-----TWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 571 RWFPCYWTGRPMWSIEPSQCLTI 593
Y P W+ I
Sbjct: 202 LQKLLY-QIDPNWTSRSDHSSNI 223
Score = 32.9 bits (74), Expect = 0.38
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 63/173 (36%)
Query: 1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
+D + + S+H + + L EL LL S+ + + L+L V
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYEN----CLLVL------LNVQ 254
Query: 61 D------------ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
+ ILL T+ ++ S + L +H +
Sbjct: 255 NAKAWNAFNLSCKILLT-----------TRFKQVTDFLSAATTTHISL--------DHHS 295
Query: 109 VSDYTP---LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL---MLAAM 155
++ TP SL Y++ L L +P ++A
Sbjct: 296 MT-LTPDEVKSLLLK--YLDCRPQDLPREV---------LTTNPRRLSIIAES 336
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 34.8 bits (79), Expect = 0.053
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM 458
E K+ KK+ K K+K E + + +N
Sbjct: 6 EKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNF------------------ 47
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
+ + + R A K RK ++KL ++ K E + E+ +
Sbjct: 48 AELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA 94
Score = 31.8 bits (71), Expect = 0.55
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKK------EEKRKAMEEEEEVIRVAKNQQAERANK 447
+ + + R A K RK ++KL + +E R+ E + R+A+
Sbjct: 48 AELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPA 107
Query: 448 NANILL 453
+
Sbjct: 108 EPKLAF 113
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 35.1 bits (81), Expect = 0.077
Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
++ E+ E + + + ++ R EE + +N
Sbjct: 12 DDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKEN 71
Query: 449 ANILLEELDMEKWR-----EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
L++ D ES + KR K+ ++++ + + E++E
Sbjct: 72 YEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVR--LDPYVTAEDIE 129
Query: 504 VQEVEGEMMEEETEE 518
+ ++E E +E EE
Sbjct: 130 IMDMERERRLDEFEE 144
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 34.5 bits (79), Expect = 0.087
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 408 KRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI-----LLEEL-DMEKW 461
K+E + +K +++EE+R ME + + R + + + + L+ L E +
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVF 451
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRK 490
++ + + RKR + ++ K
Sbjct: 452 DKDLSKLKRNRKRITNQMTDSSRERPITK 480
Score = 32.9 bits (75), Expect = 0.28
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 473 KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
K+E + +K +++EE+R ME + +E+ E E + + + EE+ E D
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFD 439
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid
receptor, icosahedral virus; 3.45A {Adeno-associated
virus - 5}
Length = 724
Score = 34.8 bits (79), Expect = 0.091
Identities = 9/71 (12%), Positives = 23/71 (32%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSG 525
KR + +K + + + K E +++++ + +T
Sbjct: 142 KRIDDHFPKRKKARTEEDSKPSTSSDAEAGPSGSQQLQIPAQPASSLGADTMSAGGGGPL 201
Query: 526 GGRGEGEEGDS 536
G +G +G
Sbjct: 202 GDNNQGADGVG 212
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 33.9 bits (78), Expect = 0.091
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSN 549
+ EE E E + E E + G E + ++ D S ++
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 550 EVK 552
+ +
Sbjct: 235 DAQ 237
Score = 30.1 bits (68), Expect = 1.8
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 486 EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
E+ +A + + V E+ E E E + + + + NS A
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Score = 28.5 bits (64), Expect = 4.6
Identities = 7/63 (11%), Positives = 19/63 (30%)
Query: 481 KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
+L +E + + + E E + + + DS ++
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 541 NSQ 543
++Q
Sbjct: 235 DAQ 237
Score = 27.8 bits (62), Expect = 8.3
Identities = 5/56 (8%), Positives = 13/56 (23%)
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
+ ++ E + E+ E E + E + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
PDB: 3c98_B
Length = 267
Score = 34.0 bits (77), Expect = 0.10
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 16/182 (8%)
Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREE----SKRAAQARKRERK 412
E ++ +E I E K++ IL EK +EE + + R
Sbjct: 32 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91
Query: 413 KQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL-----LEELDMEKWREESKR 467
K K +E+ E+ + + +R+ K Q + + K ++ + E+ + +R
Sbjct: 92 KLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 151
Query: 468 AAQARKR-------ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ R E + M+ ++ E++ E+++ E +
Sbjct: 152 QLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRE 211
Query: 521 MH 522
+H
Sbjct: 212 LH 213
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 33.7 bits (77), Expect = 0.12
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNAN 450
+ K + + K+K+ EE+R E E + + A +
Sbjct: 99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELH----SYLTRLIAAERERE 154
Query: 451 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
+ + + E ++ AQ E K K + +E ++E+ ++ +
Sbjct: 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204
Score = 29.1 bits (65), Expect = 3.7
Identities = 12/78 (15%), Positives = 23/78 (29%)
Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
+ K + + K+K+ EE+R E E + +EE
Sbjct: 99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC 158
Query: 516 TEENDMHSSGGGRGEGEE 533
++ H G +
Sbjct: 159 QRNHEGHEDDGHIRAQQA 176
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 34.2 bits (78), Expect = 0.13
Identities = 17/151 (11%), Positives = 50/151 (33%), Gaps = 1/151 (0%)
Query: 349 YIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 408
Y++ + ELL + E + R+ + + +E++ A+
Sbjct: 101 YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEARLSD 160
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREES-KR 467
+++ A E+ + + + ++ + + D E + ++
Sbjct: 161 LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREK 220
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
A+ R + + ++ K +EE +
Sbjct: 221 FAELRAQYVVTRDTIKAKGRSHATAQEEILK 251
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 34.1 bits (79), Expect = 0.14
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 403 AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
++ R R L++ E+K + +E++ ++Q+ E+A
Sbjct: 382 GSKVRLRSFTTPPNLKELEQKLDEVRKEKD--AAVQSQEFEKA----------------- 422
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
A R E++ ++++E ++ K E++ +E EV V ++
Sbjct: 423 ------ASLRDTEQRLREQVEDTKKSWK--EKQGQENSEVTVDDI 459
Score = 29.9 bits (68), Expect = 2.7
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 388 LEELDMEK----WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAE 443
L+E+ EK +E ++AA R E++ ++++E ++ K ++ +E V + A
Sbjct: 403 LDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE-KQGQENSEVTVDDIAM 461
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 33.9 bits (78), Expect = 0.15
Identities = 16/127 (12%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 391 LDMEKWREESKRAAQARKRERKKQKKLE------KKEEKRKAMEEEEEVIRVAKNQ---- 440
LD++ +R+E A R+ +R++ + + ++K + + E + N
Sbjct: 8 LDIQLFRDE-TGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKA 66
Query: 441 --QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
++A + E K E+ + + + + ++ + +E
Sbjct: 67 VGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKE 126
Query: 499 EEEVEVQ 505
+++E +
Sbjct: 127 AQQLEEE 133
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQK---KLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
+ E D +KWR ++K K +K +E E ++ A +
Sbjct: 39 IIEAD-KKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLK 97
Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
+ + + +L + ++ S + A K ++ +++ +K
Sbjct: 98 GEQVEQLCVLQL-KQLSKDLSDQVAGLAKEAQQLEEERDKL 137
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 33.7 bits (76), Expect = 0.16
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
+R + RKK K EK + K +EE + + +RA K ++ K
Sbjct: 180 QRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPK 239
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
E K+ + K K + + + V+
Sbjct: 240 KVEAPKKVDPKAAKTTPAATK--ATPAATKVAPKTQAAKTTTPAPAVKD 286
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 34.1 bits (77), Expect = 0.16
Identities = 39/239 (16%), Positives = 93/239 (38%), Gaps = 5/239 (2%)
Query: 337 VAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKW 396
VA F I + + L +K + ++ A + + N + + L+ K
Sbjct: 540 VAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKA 599
Query: 397 REESKRA---AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL- 452
E+K + +K ++ +K L K+E K +E++ E KN+ +A N+
Sbjct: 600 VAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDE 659
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
+ L ++ +++ A + + K++ +K E+ K +++ + +E + + +
Sbjct: 660 IFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGK-NKDFS 718
Query: 513 EEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
+ E + S G E S ++ + A K + + K + ++
Sbjct: 719 KAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVK 777
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 33.3 bits (75), Expect = 0.16
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKK------EEKRKAMEEEEEVIRVAKNQQAERANK 447
+K E+ ARK K+++ + + +E A + R AK +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEA 79
Query: 448 NANILL 453
++
Sbjct: 80 QHKLVF 85
Score = 31.7 bits (71), Expect = 0.53
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
+K E+ ARK K+++ + + E E E ++ +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 33.3 bits (76), Expect = 0.23
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
+E KR K R K K + ++E+ + ++ E+ + + G M
Sbjct: 380 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVM 430
Score = 32.5 bits (74), Expect = 0.38
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
QA K +K+++ EK + A E+ E+E E + + + M E +E +
Sbjct: 378 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
Score = 32.5 bits (74), Expect = 0.44
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
QA K E +K+++ E+K + K +E+ E R+ K Q+ E+ E M+ E
Sbjct: 378 QAVK-ENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEA 436
Query: 465 SKRAAQARKRERKKQKK 481
+ A R++ +Q
Sbjct: 437 LQSGAAFRRKRGPRQVN 453
Score = 29.5 bits (66), Expect = 3.5
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA-NI 451
+ + K + R+ E K ++ KE+ K E+++ + AE +
Sbjct: 373 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDS 432
Query: 452 LLEELDMEKWREESKRAAQARKRERK 477
LLE L + +R R+ RK
Sbjct: 433 LLEAL---QSGAAFRRKRGPRQVNRK 455
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 33.2 bits (76), Expect = 0.24
Identities = 14/165 (8%), Positives = 40/165 (24%), Gaps = 32/165 (19%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVA-------------- 437
D E R + + +K + EE+++ + E+
Sbjct: 8 DYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVD 67
Query: 438 -KNQQAERANKNANIL---LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
+ + + ++ + + + ++ E K
Sbjct: 68 TTDAFYKEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLFALAECDLKTYS 127
Query: 494 EEEEEEEEVEVQ--------------EVEGEMMEEETEENDMHSS 524
+E ++ ++E + + GE M
Sbjct: 128 DEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQGK 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 32.9 bits (75), Expect = 0.27
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+ + Q +R+ ++KKL +R A EE + + E M+EE + N
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNT 325
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 33.1 bits (75), Expect = 0.27
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 462 REESKRAAQARKRERKKQKKLEKKE-EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
R + + K ++ +++ +K + +EE + + + EG E+ T+
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQA 447
Query: 521 MH 522
M
Sbjct: 448 ME 449
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 33.1 bits (75), Expect = 0.30
Identities = 6/77 (7%), Positives = 22/77 (28%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
+ +E K + + ++++ N + +++ +
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGI 66
Query: 457 DMEKWREESKRAAQARK 473
+ + + ARK
Sbjct: 67 NSNNLESQLQATQAARK 83
Score = 28.1 bits (62), Expect = 9.4
Identities = 4/55 (7%), Positives = 16/55 (29%), Gaps = 2/55 (3%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE--EEEVEVQEVEGEMMEE 514
+ +E K + + +++++ + Q +E+
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVED 61
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 32.5 bits (73), Expect = 0.32
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
M E + V + +R + E W E K+ A K + + K+
Sbjct: 1 MASEAAKVAVPEKVILKRRRE-----------EVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Query: 487 EKRKAMEEEEEEEEEVEVQ 505
++ A E E +++E V+++
Sbjct: 50 AEQYAGEYEAQDKELVQLK 68
Score = 30.2 bits (67), Expect = 1.8
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKK------EEKRKAMEEEEEVIRVAKNQQAERANK 447
E W E K+ A K + + K+ E +E ++ R A+ + +
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSP 81
Query: 448 NANILL 453
A L
Sbjct: 82 EAKPLF 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 31.7 bits (71), Expect = 0.32
Identities = 16/125 (12%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+ + + Q ++ +++L ++++ K + E+ +AE N
Sbjct: 29 IASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN-ELRTKAEEEADKLNKE 87
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEM 511
+E+L + E + A ARK + + ++ E+ + + + +++ +
Sbjct: 88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147
Query: 512 MEEET 516
++ E+
Sbjct: 148 LDNES 152
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 32.1 bits (72), Expect = 0.40
Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
++ + + L EL ++ K + K++ K+ K+LE+K KR+ ++ +
Sbjct: 8 KEVTQLPEPQTASLAEL------QQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSV 61
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+ + L E L+ME + R+R+ + + K + ++
Sbjct: 62 LFLEPVYPRGLDSQVVELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQ 121
Query: 495 EEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E + E E + ++++ E +
Sbjct: 122 IAELKALKESSESNIKDIKKKLEAKRLDR 150
Score = 30.5 bits (68), Expect = 1.3
Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
E RE+ +A K + K KK+ + K ++ + ++R ++ A+
Sbjct: 114 TELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQ--------- 164
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKK-----EEKRKAMEEEEEEEEEVEVQEV 507
E L E + Q K +K + ++K E +A++E+E + ++ V E
Sbjct: 165 -ERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEY 223
Query: 508 EGEMMEEETEENDMHSSGGGRGEGEEGD 535
E ++ E +M + + +
Sbjct: 224 EEKLKTLTVEVQEMVKNYMKEVFPDGPE 251
Score = 30.5 bits (68), Expect = 1.3
Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
+E R RK+Q E+ + + E++ A + +E K+
Sbjct: 83 LEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKK 142
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEK------KEEKRKAMEEEEEEEEEVEVQE 506
LE +++ + + + +ER K++ + K + +++ E Q
Sbjct: 143 LEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQA 202
Query: 507 VEGEMMEEETEE 518
++E+ +
Sbjct: 203 ENLRAIQEKEGQ 214
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.0 bits (70), Expect = 0.40
Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
A ++ + ++ LEK E +RK +EE+ + KN + + L + E+ +
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADA--EERCDQ 73
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
K Q + ++ K+LE +EE + ++ + E+ E E++ ++ + E
Sbjct: 74 LIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED-ECSELKRDIDDLELT 126
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 32.1 bits (72), Expect = 0.54
Identities = 36/194 (18%), Positives = 82/194 (42%), Gaps = 7/194 (3%)
Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
+ L +K + ++ A + + N + + L+ K E+K + + K QK
Sbjct: 299 RNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVK-KAQK 357
Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQ-----QAERANKNANILLEELDMEKWREESKRAAQ 470
LEK KR+ +E+E E +K+ +A+ + + L ++ +++ A
Sbjct: 358 DLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAY 417
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGE 530
+ + K++ +K E+ K +++ + +E + + + EET + + S G
Sbjct: 418 TQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLK-ALKGSVKDLGI 476
Query: 531 GEEGDSGIDANSQA 544
E S ++ + A
Sbjct: 477 NPEWISKVENLNAA 490
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 31.5 bits (71), Expect = 0.63
Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 1/151 (0%)
Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
+ K +ELD + + ++ + + R+ EEE
Sbjct: 39 LEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEE 98
Query: 433 VIRV-AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ R + A + + A +E + ES+ K E ++ + E K A
Sbjct: 99 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
+ EE ++ + E + E EE E ++
Sbjct: 159 DRKYEEVARKLVIIESDLERAEERAELSEGK 189
Score = 30.4 bits (68), Expect = 1.6
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 2/147 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ + A K+A LE + + E+ A+ R+ + +++ +E A+++ E
Sbjct: 55 DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
E ++ER K ++ + + +E + E +K E +
Sbjct: 115 EA--EKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 172
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ E EE E+ E + +EEE +
Sbjct: 173 ESDLERAEERAELSEGKCAELEEEIKT 199
Score = 29.6 bits (66), Expect = 2.8
Identities = 23/147 (15%), Positives = 61/147 (41%), Gaps = 2/147 (1%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
K ++AE+A + ++ ++ ++E K Q + + K + + + +
Sbjct: 111 QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLV 170
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ + ++AE + + EL+ E + + + E+ QK+ + +EE +
Sbjct: 171 IIE--SDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 228
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEE 518
++ +E E E E +E+ ++
Sbjct: 229 SDKLKEAETRAEFAERSVTKLEKSIDD 255
Score = 29.6 bits (66), Expect = 2.8
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 4/150 (2%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
K + E K A + E+ D + K ER +++ + + + EE +
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK 198
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
V K+ +A+ + E +++ ++ K A + + KLEK +
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL-- 256
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
E+E ++++ + + E+ + +
Sbjct: 257 --EDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 28.5 bits (63), Expect = 5.8
Identities = 25/148 (16%), Positives = 54/148 (36%)
Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
+ +A+ A LEE + E + ++ ++K ++ + ++A E
Sbjct: 97 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 156
Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
+ R + + +++ E E + + K K LE + EK
Sbjct: 157 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQ 216
Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEEN 519
E++ EEE +V +++ E E
Sbjct: 217 KEDKYEEEIKVLSDKLKEAETRAEFAER 244
Score = 28.5 bits (63), Expect = 5.8
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE-----KKEEKRKAMEE 429
AE + N ++ + E R + + A +K E ++ E K E R +E
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138
Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
E+ I+ + ++A+ ++A+ EE+ + ES + E + K E +EE +
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIK 198
Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ E + E + + EEE +
Sbjct: 199 TVTNNLKSLEAQAEKYSQKEDKYEEEIKV 227
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 31.8 bits (73), Expect = 0.65
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 29/128 (22%)
Query: 391 LDMEKWRE--ESKRAAQARKRERKKQKKLEK---KEEKRKAMEEEEEVIRVAKNQQAERA 445
LD++ RE E + ++ E +K K +++ + + + +E + ER
Sbjct: 2 LDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEIN------RLRHER- 54
Query: 446 NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
N + + + RK+ + L K E K + E E E EE++ +
Sbjct: 55 ----N------------KIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK-K 97
Query: 506 EVEGEMME 513
+++ +
Sbjct: 98 KIDYYLWR 105
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 30.8 bits (69), Expect = 0.67
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 6/130 (4%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
E+ +R A A ++ + +K ++ E K +E + Q E K A +
Sbjct: 10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQ-EIQLKEAKHIA 68
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE----EEEEEEVEVQEVEG 509
E+ D K+ E +++ + +++ E E K +EEE + +E + E
Sbjct: 69 EDAD-RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127
Query: 510 EMMEEETEEN 519
E
Sbjct: 128 LSKNYHLENE 137
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 31.6 bits (71), Expect = 0.70
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGE 530
+ + +K KEEK K EE E+ +E ++ + + GRG
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGN 192
Score = 31.6 bits (71), Expect = 0.91
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 365 CSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 424
AK RAN+ IL + A + E+ K + K+
Sbjct: 433 APDENIPAKILSYNRANRAVAILCNH-----------QRAPPKTFEKSMMNLQTKIDAKK 481
Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ + + ++ AK + ++E K + ++ K + +
Sbjct: 482 EQLADARRDLKSAKADAKVMKDAKTKKVVESKK--------KAVQRLEEQLMKLEVQATD 533
Query: 485 KEEKRKAMEEEEE 497
+EE ++ +
Sbjct: 534 REENKQIALGTSK 546
Score = 30.9 bits (69), Expect = 1.2
Identities = 17/142 (11%), Positives = 46/142 (32%), Gaps = 14/142 (9%)
Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYI 350
+++ + L + A ++ + +S A +AV + NH P E +
Sbjct: 419 NASITLQQQLKELTAPDENIPAKILSYNRA------NRAVAILCNHQRAPPKTFEKSMMN 472
Query: 351 QTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 410
++ + ++ AK + ++E K + ++
Sbjct: 473 LQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKK--------KAVQRLEEQL 524
Query: 411 RKKQKKLEKKEEKRKAMEEEEE 432
K + + +EE ++ +
Sbjct: 525 MKLEVQATDREENKQIALGTSK 546
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 30.6 bits (68), Expect = 0.84
Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 459 EKWREESKR-AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
E ++ KR +A KR R+++ + + ++ + ++E ++
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD 177
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.2 bits (70), Expect = 0.89
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 459 EKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+K KR + E++K +E+ + ++++EEE
Sbjct: 258 KKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEE 301
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.2 bits (67), Expect = 1.0
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
E+L + + ++ +K + E+KEE+ +E+E+E+E+ + + E E
Sbjct: 9 YWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEE 68
Query: 512 MEEETEE 518
EEE +
Sbjct: 69 EEEEVTD 75
Score = 27.6 bits (60), Expect = 7.7
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 468 AAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
AA+ E+ ++K E +E++ + +E+E+E+E+ + + + E EEE E D
Sbjct: 23 AAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD 75
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 30.6 bits (68), Expect = 1.1
Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 350 IQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 409
+Q+ + L + + S R + LL+ ++ + + + + + +
Sbjct: 65 LQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHME-KNTKLDMQFIKDSCQH 123
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
+ + EK + E+ R+ + + ++ M+ + ESKRAA
Sbjct: 124 YEIEYRHRAANLEKCMS-----ELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAA 178
Query: 470 QARKRER 476
+ ++ R
Sbjct: 179 ELEEKRR 185
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.0 bits (71), Expect = 1.4
Identities = 23/144 (15%), Positives = 58/144 (40%), Gaps = 26/144 (18%)
Query: 391 LDMEK--WREESKRAAQARKRERKKQKKLEKKEEKRKAMEE----EEEVIRVAKN--QQA 442
L++E+ ++E + ++R + + ++ K E+ + E E++R + +
Sbjct: 413 LEIEREALKKEKDPDS--QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL 470
Query: 443 ERANKNANILLEELDMEKWREESKRAAQAR-KRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
+ + + + D+ + AA+ R K + ++E EK + E E
Sbjct: 471 DEVRREIELAERQYDLNR-------AAELRYGELPKLEAEVEALSEKLRGARFVRLEVTE 523
Query: 502 VEVQEV--------EGEMMEEETE 517
++ E+ +++E E E
Sbjct: 524 EDIAEIVSRWTGIPVSKLLEGERE 547
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.8 bits (69), Expect = 1.4
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGE 530
++++K KEEK+ E+++ E E +G + + GRG+
Sbjct: 113 VQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRGRGK 168
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 1/127 (0%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
+W ++S + KR+++ ++K E + A A +
Sbjct: 34 GGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRL-SAAIAAREKDEN 92
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEM 511
L+ L + R + + ++ + E E + +
Sbjct: 93 TLKTLRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRI 152
Query: 512 MEEETEE 518
E
Sbjct: 153 SPREARS 159
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 29.8 bits (67), Expect = 1.4
Identities = 4/50 (8%), Positives = 12/50 (24%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
AR + + + + ++ + + E E
Sbjct: 115 ARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQ 164
Score = 29.4 bits (66), Expect = 2.0
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 462 REESKRAAQAR-KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
RE +AA+ + R R + +++K A + + + ET+
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQG 165
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 30.6 bits (69), Expect = 1.5
Identities = 15/121 (12%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 389 EELDMEKWREESKRAAQARKRERKKQK----KLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
E +++ ++S A + K + K++++ + +++ +I A E
Sbjct: 268 EFVEVNIKDKKSFNEAVNKIERCKNKPVVFGKIKREFKPWFDTLKDKILINKAIIVDDEF 327
Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR--KAMEEEEEEEEEV 502
+ N+ +E L++++ + ++ ++ KA+ E +E +
Sbjct: 328 IDMPDNVDIESLNIKE-----------LLVDYANRQGIDGDLVLSLYKALLNNENWKELL 376
Query: 503 E 503
+
Sbjct: 377 D 377
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.5 bits (68), Expect = 1.5
Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 1/127 (0%)
Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
N L +L + K + + +KK +++ + E R EE+
Sbjct: 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104
Query: 436 VAKNQQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+ E N I + E ++E + A + E + +++ +E ++ + +
Sbjct: 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164
Query: 495 EEEEEEE 501
++E+ E
Sbjct: 165 KKEDLVE 171
Score = 28.5 bits (63), Expect = 5.0
Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 2/167 (1%)
Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQ-QAERANKNANILLEELDMEKWREESKRAAQ 470
K+++ E + ++ + K N L +L + K + +
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 471 ARKRERKKQKKLEKKEEKRKAMEE-EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRG 529
+KK +++ + E R E + +E + + E +++
Sbjct: 75 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134
Query: 530 EGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMRWFPCY 576
E + + + N +T ++K+ +K + + + Y
Sbjct: 135 LELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFY 181
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.4 bits (68), Expect = 1.5
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
+R+ ++ K E K+ K ME + E
Sbjct: 220 SLIQRSKCGPVGSDERVK--EFKQSLIKYMETQRSYTALAE 258
Score = 28.1 bits (62), Expect = 7.8
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
R + + + KQ ++ E +R E
Sbjct: 224 RSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.5 bits (69), Expect = 1.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
QA K +K+++ EK + A E+ E+E E
Sbjct: 307 QAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 28.6 bits (64), Expect = 6.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEE 432
QA K +K+++ EK + A E+ E+
Sbjct: 307 QAVKENQKRRETEEKMRRAKLAKEKAEK 334
Score = 28.2 bits (63), Expect = 8.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 396 WREESKRAAQARKRERKKQKKLEKKEEKRK 425
+E KR K R K K + ++E+ +
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 28.2 bits (63), Expect = 8.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRK 490
+E KR K R K K + ++E+ +
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLE 338
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 30.3 bits (68), Expect = 1.7
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
+ D EE+ + Q + K E + +K K + IR + +RA K
Sbjct: 20 QEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAK------QSIRAKCTEYLDRAEKLK 73
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
L + K + + ++ +++K E ++ E++ +++G
Sbjct: 74 EYL-----------KKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQG 122
Query: 510 EMMEE 514
++ E
Sbjct: 123 AIVIE 127
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 30.0 bits (68), Expect = 1.8
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 419 KKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK 478
K++ K M + + K +L + +D+ K E A + K
Sbjct: 176 KQDYKEGEMTLKSALALAIK------------VLNKTMDVSKLSAEKVEIATLTRENGKT 223
Query: 479 QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
++ K++E + +++ EEEE + E ++ E E E++
Sbjct: 224 VIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKD 260
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 30.1 bits (67), Expect = 1.8
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 466 KRAAQARKRERKKQKKLEKKEE---KRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
R + K + + R E +E+EEEE + + + E
Sbjct: 183 ARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADT 242
Query: 523 SSGGGRGEGEEGDSGIDANSQASCSSNEVKTAA 555
G + + I A + A ++ A
Sbjct: 243 WGGEWGTDAAAQPAAIPAQAGADWTAAPAPAAG 275
Score = 29.4 bits (65), Expect = 3.5
Identities = 12/71 (16%), Positives = 23/71 (32%)
Query: 486 EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQAS 545
EE ++ EEE E +T + + + +G D + +
Sbjct: 212 EEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAPA 271
Query: 546 CSSNEVKTAAP 556
++ TAA
Sbjct: 272 PAAGGWDTAAA 282
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 29.6 bits (67), Expect = 1.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
+ EE EV EV + EEE E
Sbjct: 178 EDVEKLAEEAAAEVAEPEVIKKGKEEEEE 206
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.3 bits (69), Expect = 1.9
Identities = 14/133 (10%), Positives = 41/133 (30%), Gaps = 30/133 (22%)
Query: 391 LDMEKWRE--ESKRAAQARKRERKKQKKLEK---KEEKRKAMEEEEEVIRVAKNQQAERA 445
LDME E A ++ + K L ++ + + E+ + + E+
Sbjct: 41 LDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIR------SLEEEK- 93
Query: 446 NKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
A ++ + ++++ + + E +++ +
Sbjct: 94 --EAV--------------TEAVRALVVN--QDNSQVQQDPQYQSLRARGREIRKQLTLL 135
Query: 506 EVEGEMMEEETEE 518
+ +EE+
Sbjct: 136 YPKEAQLEEQFYL 148
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 29.3 bits (65), Expect = 2.0
Identities = 16/108 (14%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
++ ++ + + + + ++ + KR A+E E I++ + +Q + K++ LE
Sbjct: 24 QQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFE-EQGQTQEKSSKEYLERF 82
Query: 457 DMEKWREESKRAAQARKRERKKQKKL-EKKEEKRKAMEEEEEEEEEVE 503
E +E +R +R + + ++ E + + + + + + E++
Sbjct: 83 RREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREID 130
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.0 bits (68), Expect = 2.1
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 20 AGGHEELVELLLSRGADI----EHRDKKGFTPLILAATAGHDKVVDILLN 65
+E+V L GA + + + F P I + LN
Sbjct: 202 RPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALN 251
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.7 bits (67), Expect = 2.1
Identities = 9/58 (15%), Positives = 20/58 (34%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
E+ ++ + + +++ +EE EEE E E E+ +
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAE 59
Score = 28.9 bits (65), Expect = 4.2
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
E++ R++ +++ + +EE EE EE E E E +
Sbjct: 10 EQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKA 66
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.9 bits (67), Expect = 2.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 475 ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGE 532
+K+QKK +EK++ E E+ EE+ + E++G E+ + RG G
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRR--EQVGNFKVEPPDLFRGRGA 158
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 30.2 bits (69), Expect = 2.3
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 37/130 (28%)
Query: 391 LDMEKWRE--ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKN 448
+D+++ R+ E A K + L + + + +++ + Q ER N
Sbjct: 2 VDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQ------EVQTER---N 52
Query: 449 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+KR +A EEK + + EE + E
Sbjct: 53 Q--------------VAKRVPKA------------PPEEKEALIARGKALGEEAKRLEEA 86
Query: 509 GEMMEEETEE 518
E E
Sbjct: 87 LREKEARLEA 96
Score = 28.3 bits (64), Expect = 8.9
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 380 ANKNANILLEE-LDMEKWREESKRAAQARKRERKK------QKKLEKKEEKRKAMEEEEE 432
K + LE L +++ +E K+ Q + ER + + E+KE + E
Sbjct: 19 REKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGE 78
Query: 433 VIRVAKNQQAERANKNANILLE 454
+ + E+ + +LL+
Sbjct: 79 EAKRLEEALREKEARLEALLLQ 100
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQK----KLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+ ++W + + K+ QK + + KE+ + + E+E+ E + +
Sbjct: 35 IIAEY-KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93
Query: 509 GEMMEEETEE 518
++
Sbjct: 94 EAEADKNLRS 103
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 30.0 bits (68), Expect = 2.4
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR-----KAM-EEEEEVIRVAKNQQ 441
LE+L E ++E K +E +++ LEK E E +
Sbjct: 248 LEQLK-ESLKKEGKEIYDVEMKESMREQLLEKLPEIVEIEISDRTLEILVNEAI----NR 302
Query: 442 AERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLEKKEEKRKAMEEE 495
+R + I+ EK+REE K + ++K + +E+ + EE
Sbjct: 303 LKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEE 362
Query: 496 EEEEEEVEVQEVEGEMMEEETEENDM 521
+ + + + ++
Sbjct: 363 LAPFWGISPDRAKSLVKARQDLREEL 388
Score = 30.0 bits (68), Expect = 2.4
Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
+ +R + I+ EK+REE K + + + L +++ + +E +
Sbjct: 301 NRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKG----ISVNDEEL 356
Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK-------KQKKLEKKEE 487
+ A + + + R++ + + +RK + K + +
Sbjct: 357 EKEAEELAPFWGISPDRAKSLVKA---RQDLREELRWAILKRKVLDLLLQEVKVKVVEPK 413
Query: 488 KRKAMEEEEEEEEEVEVQE 506
E +E+ E
Sbjct: 414 GEGDDSEGKEDNLEHHHHH 432
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 29.5 bits (66), Expect = 2.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
E+++A EEE E E +V EV+ E+ T+ +
Sbjct: 205 TAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 29.5 bits (66), Expect = 3.0
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R + + E K ++ E + E++E E +E E+ E
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEV 227
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus
furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Length = 454
Score = 30.1 bits (66), Expect = 2.6
Identities = 16/118 (13%), Positives = 33/118 (27%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
E + + + K E+ +E + ++ I+
Sbjct: 310 YELIGKNLQNEEKREKLEKVLSNHKGGNFGLPLNFNAFKEWASEYGVEFKTNGSQTIAII 369
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+E R ++A + ++ K+E+ K M E E V E
Sbjct: 370 NDERISLGQWHTRNRVSKAVLVKMLRKLYEATKDEEVKRMLHLIEGLEVVRHITTTNE 427
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T
2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T
2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 28.9 bits (65), Expect = 2.6
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 471 ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
R++ R +K++++ +A +EE ++ +E + +
Sbjct: 110 IRRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQ 145
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.6 bits (67), Expect = 2.8
Identities = 8/99 (8%), Positives = 24/99 (24%), Gaps = 7/99 (7%)
Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
++R + M+K + +
Sbjct: 113 SIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRA--SLAAGPMVKWAI 170
Query: 491 AMEEEEEEEEEV-----EVQEVEGEMMEEETEENDMHSS 524
A + + V E+Q++E + + + + +
Sbjct: 171 AQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQ 209
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 29.9 bits (66), Expect = 3.0
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
E EE+ ++++N+ L D E W + + A + + + +E
Sbjct: 134 DRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYY-RASELWDIRE 192
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGG 526
+ K ++ E + E ++ E E ++N + G
Sbjct: 193 DNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGS 232
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 29.8 bits (68), Expect = 3.2
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 384 ANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAE 443
N +L + +W ++ + RER + +E + K + + E++R E
Sbjct: 703 KNDFDLDLPIAEWLDKEPELHEETLRERILAQSIEVYQRKEEVV--GAEMMR-----HFE 755
Query: 444 RANKNANILLEELDMEKWRE 463
+ ++L+ LD W+E
Sbjct: 756 K-----GVMLQTLD-SLWKE 769
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 29.1 bits (65), Expect = 3.2
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
W ++ + R + + + + EE E++ E E EE EE
Sbjct: 174 WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEE 231
Score = 28.0 bits (62), Expect = 7.8
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 463 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
E R A + + R E E++ EE +E E +EE E
Sbjct: 179 REVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTE 234
Score = 28.0 bits (62), Expect = 9.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
+++E++ + EE EEE + EV E + E E E D
Sbjct: 208 EEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENAD 248
>3pfy_A OTU domain-containing protein 5; structural genomics, structural
genomics consortium, SGC, PE C65 otubain, hydrolase;
HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Length = 185
Score = 28.9 bits (64), Expect = 3.2
Identities = 6/52 (11%), Positives = 11/52 (21%)
Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSG 525
++ + E E + E E E+ G
Sbjct: 7 HSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKG 58
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 29.2 bits (66), Expect = 3.8
Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 21/182 (11%)
Query: 366 SMVIRVAKNQQAERANKNAN-ILLEEL---DMEKWREESKRAAQARKRERKKQKKLEKKE 421
+V + + RA A +L+ L +W E + + R+ ++K E +
Sbjct: 109 KLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQL 168
Query: 422 EKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 481
+ ++ + + + A + L+ L Q ++ K++K
Sbjct: 169 DDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLF------------QNLGSDKTKKRK 216
Query: 482 LEKKEEKRKAMEEEEEE-EEEVEVQEVEGEMMEEE----TEENDMHSSGGGRGEGEEGDS 536
++ K+ + +++E + E+++ + +E+ +E D G +
Sbjct: 217 MKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSRE 276
Query: 537 GI 538
G+
Sbjct: 277 GV 278
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 29.5 bits (66), Expect = 3.8
Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 402 RAAQARKRERKKQKKLEKKEEKR----KAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
R ++ E Q +L + + KAM + + + ++ E
Sbjct: 79 RVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQR 138
Query: 458 MEKWREESKRAA--QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV--EVQEVEGEMME 513
+ + + + E +K+K L + K + + + + E+ EM+
Sbjct: 139 RLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMIS 198
Query: 514 EETEEN 519
+ +
Sbjct: 199 SGSWRD 204
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 28.9 bits (64), Expect = 3.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 432
+ E++R+ R+R++++ KKEE K + +EEE
Sbjct: 158 QAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEE 193
Score = 28.5 bits (63), Expect = 5.6
Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 453 LEELDMEKWREESKRAAQARKRERKK---QKKLEKKEEKRKAMEEEEEEEEE 501
+ +L +K R++ +R + K +++ E+ + K++ + + +EEE
Sbjct: 142 IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEE 193
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 28.2 bits (62), Expect = 3.9
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQ----QAERANKNANILLEELDMEKWREES 465
ER ++ K + E + V+ K +A+ A + D E R E
Sbjct: 18 ERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL 77
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
+ R+ K Q+ L + E K +A E+ + +E + V+
Sbjct: 78 DELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQ 120
Score = 27.0 bits (59), Expect = 9.3
Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQ 470
K +K + R+ + ++ + Q ++ E D+ + + ++AA
Sbjct: 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAAD 68
Query: 471 ARKRERKKQKKLEK-KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
+ R + +L + +E+ KA E E + + E ++E+ E
Sbjct: 69 DCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSE 117
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.1 bits (66), Expect = 3.9
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
K + +E+ E+ +A +EE+E+ ++ E E E + +T++ +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 28.5 bits (64), Expect = 4.2
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK-----AMEEEEEVIRVAKNQQA 442
LE+L E ++E K +E +++ LEK E + E + +
Sbjct: 6 LEQL-KESLKKEGKEIYDVEMKESMREQLLEKLPEIVEIEISDRTLEILVNEAI---NRL 61
Query: 443 ERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLEKKEEKRKAMEEEE 496
+R + I+ EK+REE K + ++K + +E+ + EE
Sbjct: 62 KREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEEL 121
Query: 497 EEEEEVEVQEVEGEMMEEETEENDM 521
+ + + + ++
Sbjct: 122 APFWGISPDRAKSLVKARQDLREEL 146
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.3 bits (66), Expect = 4.2
Identities = 13/128 (10%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 391 LDMEKWREESKRAAQA-RKRERKKQKKLE------KKEEKRKAMEEEEEVIRVAKNQ--- 440
LD++ +R + R+ + K+ K K + + + + + KN
Sbjct: 3 LDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSK 62
Query: 441 ---QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
+ + + ++ + + K + + + +A+ + +
Sbjct: 63 TIGEKMKKKEPVG---DDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDA 119
Query: 498 EEEEVEVQ 505
E ++E +
Sbjct: 120 ERIKLEAE 127
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 28.4 bits (63), Expect = 4.4
Identities = 7/72 (9%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAM-----------------EEEEEEEEEVEVQEVE 508
+R + K ++ + E + E+ E E ++++++
Sbjct: 81 ERTQYWEFEKDKDREHDKLVELCKIQFAAIPWDKFTQVAKFSIPEDTEIFEGSLDLEQMR 140
Query: 509 GEMMEEETEEND 520
++ + D
Sbjct: 141 LRRVQTGIKLFD 152
Score = 28.0 bits (62), Expect = 5.5
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+R + K ++ + E +
Sbjct: 81 ERTQYWEFEKDKDREHDKLVELCKIQFAA 109
Score = 27.3 bits (60), Expect = 9.1
Identities = 2/32 (6%), Positives = 14/32 (43%)
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
++ + + E+ + ++ E +++ +
Sbjct: 80 FERTQYWEFEKDKDREHDKLVELCKIQFAAIP 111
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 28.1 bits (62), Expect = 5.2
Identities = 19/114 (16%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 400 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA--NKNANILLEELD 457
+ A +++ R+ + + + +K EE + R + + +RA + ++ + +
Sbjct: 36 CESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRN 95
Query: 458 MEKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+ +++R R +E KK K+ KK A + ++ V+ V+
Sbjct: 96 QKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 29.1 bits (64), Expect = 5.2
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGG-GRGEGEEGD 535
+Q + + +E+K A + EV Q G+ DM GG GR + +
Sbjct: 35 AEQIEKDDREDKENAFKRRRCGVCEVCQQPECGK----CKACKDMVKFGGSGRSKQACQE 90
Query: 536 ------SGIDANSQASCSSNEVKTAAPNSRRKDKKKK--KLDMRW 572
+ +A+ N + +P + KKKK K + W
Sbjct: 91 RRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQGKKKKQNKNRISW 135
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 28.7 bits (65), Expect = 5.3
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 455 ELDMEKWREESKRAAQ----ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGE 510
+L E+ + A+ R K+ + + + + E E E+ E E+ ++ E
Sbjct: 16 DLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
Query: 511 MM 512
++
Sbjct: 76 LL 77
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 28.5 bits (63), Expect = 5.5
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
++ K+ + K K + + VIR + + K I
Sbjct: 129 VPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTKGEKTYTKAPKI------------- 175
Query: 465 SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE 497
+R ++ +RK+ ++ K + E E
Sbjct: 176 -QRLVTPQRLQRKRHQRALKVRNAQAQREAAAE 207
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin
polymerization, protein binding; 2.29A {Homo sapiens}
Length = 279
Score = 28.7 bits (63), Expect = 5.8
Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI-RVAKNQQAERANKNANI 451
+ W+E+ + + +++E++KQK+ + ++
Sbjct: 158 FDLWKEKMLQDTEDKRKEKRKQKQKNLDRGGSGGSGGSGGSGGSGGSKRHPSTLPVISDA 217
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKE---EKRKAME----EEEEEEEEVE 503
L+ + + ++ + R++E K ++ +R A+E E++ E +EV+
Sbjct: 218 RSVLLEAIRKGIQLRKVEEQREQEAKHERIENDVATILSRRIAVEYSDSEDDSEFDEVD 276
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 28.6 bits (64), Expect = 6.1
Identities = 18/164 (10%), Positives = 50/164 (30%), Gaps = 5/164 (3%)
Query: 409 RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-----MEKWRE 463
E ++LE + A +E+ E K++ E + + + + +
Sbjct: 398 DELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIK 457
Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
E + + + E + + + K ++ + G+ M E + +
Sbjct: 458 EYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDG 517
Query: 524 SGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
+ ++ + N + S RR + ++
Sbjct: 518 NNKSYDYDDDSEISFRGNKNYNNRSQNRDYDDEPFRRSNNNRRS 561
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 28.7 bits (63), Expect = 6.4
Identities = 8/71 (11%), Positives = 25/71 (35%)
Query: 443 ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
+A+ L ++D E+ E + +A + + + ++ EE
Sbjct: 272 SKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEAD 331
Query: 503 EVQEVEGEMME 513
+ + + + +
Sbjct: 332 DDDDDDEDAGD 342
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 28.1 bits (63), Expect = 6.5
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 501 EVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNE 550
VEV + E EEE +H + + +
Sbjct: 133 NVEVVAIR-EATEEELAHGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGG 181
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 28.9 bits (64), Expect = 6.6
Identities = 14/164 (8%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 326 HVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNAN 385
+ V MV S + + ++ +AE+ +
Sbjct: 447 MLHTVTDMVRLAFTDVSIKNFEEFFNL------------HRTAKSKIEDIRAEQEREGEK 494
Query: 386 ILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERA 445
++ ME+ + +++ A ++ + + + + + + +
Sbjct: 495 LIRLHFQMEQIVYGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTY 554
Query: 446 NKN-----ANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
+ +L ++ +E + RK +++ +L +
Sbjct: 555 GQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARLTQ 598
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 28.6 bits (65), Expect = 6.9
Identities = 19/127 (14%), Positives = 54/127 (42%), Gaps = 28/127 (22%)
Query: 391 LDMEKWREESKRAAQA-RKRERKKQKKLEK---KEEKRKAMEEEEEVIRVAKNQQAERAN 446
+D+ RE+ + R+++ ++K +++R+ + + E ++ER
Sbjct: 2 IDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLE------ALRSER-- 53
Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
N + SK + ++ + + + +E ++ ++ EEE +VE +E
Sbjct: 54 ---N------------KLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE-EE 97
Query: 507 VEGEMME 513
++ ++
Sbjct: 98 LKNTLLW 104
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.8 bits (61), Expect = 7.1
Identities = 18/125 (14%), Positives = 48/125 (38%)
Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
E+ + + + ++ ++ + +L + +E + +E E E V Q+ + L
Sbjct: 10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLK 69
Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
E++ K + E + A ++ + + + K + + E E+ + E
Sbjct: 70 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129
Query: 514 EETEE 518
E+
Sbjct: 130 MSLED 134
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 28.6 bits (64), Expect = 7.3
Identities = 12/66 (18%), Positives = 26/66 (39%)
Query: 450 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
N++ E + EE R + +E + + ++ EE E+ + E+
Sbjct: 313 NLVKIERKSRREIEEVLRESPEEFKEELDKLDYFELFKEYLKKREENHEKLLKILDELLD 372
Query: 510 EMMEEE 515
E+ + E
Sbjct: 373 EVKKSE 378
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation,
signal transduction inhibitor, hydrolase in; 1.80A
{Saccharomyces cerevisiae}
Length = 234
Score = 28.2 bits (62), Expect = 7.5
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 342 SDQEMTRYIQTVNDKELLDKCQ-ECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
S + ++ + D +LLD E + N Q + + R+E
Sbjct: 107 SVESFINFLTLLQDYKLLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEK 166
Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
Q K K LE + + + +E++R + + + +E+ E
Sbjct: 167 IELFQRNKEISTKLHCLELELKNNDEDHDHDELLRELYLMRLHHFSLDTINNIEQNLFEC 226
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 28.3 bits (63), Expect = 7.7
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
M+ + + R + E A K +L E + + ++ + +E
Sbjct: 1 MKFDPQKYRELAEKDFEAAWKAGKEILAERSPNE-LYPRVGFSFGKEHPLFATIQ-RLRE 58
Query: 487 EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
E VE V+ + E D
Sbjct: 59 AYLSIGFSEVVNPLIVEDVHVKKQFGREALAVLD 92
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 28.2 bits (62), Expect = 8.1
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 466 KRAAQARKRERKKQKK--LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
K A+ K +++ L+ + K ++ + + E + + E+ D +
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Query: 524 SGGGRGEGEE 533
G EG+E
Sbjct: 401 QGQEIKEGDE 410
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 28.1 bits (62), Expect = 8.1
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 392 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANI 451
+ E +K Q K+ + K E + + + + Q + + A
Sbjct: 19 LFIRTIEGAKFRGQWDKKRSIQLAK-EMIPDIQALRYSYIDPEELVDTPQMKDLKEKAKG 77
Query: 452 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEG 509
++E L E W + A RE+ +++ K + + + V
Sbjct: 78 IIEALGGEDWHHKFLSQASREDREKVEEQVARIKFFLNTILNLDRRLKLGKINDPVIA 135
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 28.2 bits (62), Expect = 8.5
Identities = 21/197 (10%), Positives = 69/197 (35%), Gaps = 13/197 (6%)
Query: 338 AQFPSDQEMTRYIQTVND-KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKW 396
+ M + V ++ ++ ++ + + +K L E ++
Sbjct: 35 LSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNE-KLQDT 93
Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE--EVIRVAKNQQAERANKNANIL-- 452
+ + K+ +K K+ ++ E+ +R+ ++Q + + K ++
Sbjct: 94 MARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTR 153
Query: 453 ---LEELDMEKWREESKRAAQARKR----ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
++ + ++ E R + + + ++ E M E E + E++
Sbjct: 154 YNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIR 213
Query: 506 EVEGEMMEEETEENDMH 522
+ ++ + E ++H
Sbjct: 214 DRHKDIQQLERSLLELH 230
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 26.8 bits (59), Expect = 8.6
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
+E +E W A + + R+ + + E+ +K + E
Sbjct: 57 VEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILRE 98
Score = 26.8 bits (59), Expect = 8.6
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
+E +E W A + + R+ + + E+ +K + E
Sbjct: 57 VEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILRE 98
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl
transferase; fatty acid biosynthesis, coenzyme A; HET:
COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A*
Length = 323
Score = 28.2 bits (62), Expect = 9.2
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 322 FRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKEL 358
+ +GH++ VRW + PS E ++++ +E
Sbjct: 19 YFQGHMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEK 55
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1,
PIL1, BAR domain, plasma membrane, SELF-ASS
phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Length = 234
Score = 27.7 bits (61), Expect = 9.3
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R +R R+ K ++ + K + E+E+ E E + E +
Sbjct: 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSN 156
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 26.6 bits (58), Expect = 9.6
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 462 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
R R A R ++ +K E +++K + +E E+ E ++E + + + E
Sbjct: 41 RTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA 97
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES
stationary phase, ribosome hibernation,
ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB:
3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Length = 119
Score = 26.8 bits (60), Expect = 9.7
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
Q K + K + + K EE EEE
Sbjct: 84 QLNKLQHKGEARRAATSVKDANFVEEVEEEHHHH 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.355
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,755,300
Number of extensions: 549569
Number of successful extensions: 5782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3163
Number of HSP's successfully gapped: 982
Length of query: 596
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,937,614
Effective search space: 1956994158
Effective search space used: 1956994158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.3 bits)