Query psy9043
Match_columns 566
No_of_seqs 3 out of 5
Neff 1.1
Searched_HMMs 46136
Date Fri Aug 16 17:30:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11372 lysozyme inhibitor; P 35.0 18 0.00038 30.9 0.9 40 1-41 1-40 (109)
2 PF14283 DUF4366: Domain of un 26.3 46 0.00099 31.6 2.1 38 6-43 3-40 (218)
3 PRK15222 putative pilin struct 23.9 50 0.0011 30.9 1.8 14 7-20 11-24 (156)
4 PF15240 Pro-rich: Proline-ric 23.5 32 0.0007 32.5 0.5 15 7-21 2-16 (179)
5 PF05907 DUF866: Eukaryotic pr 21.9 46 0.001 29.9 1.2 32 9-40 3-35 (161)
6 KOG3159|consensus 21.7 18 0.0004 37.0 -1.5 49 7-58 6-57 (336)
7 PF07172 GRP: Glycine rich pro 21.4 32 0.00069 29.0 0.0 7 1-7 1-7 (95)
8 KOG1288|consensus 20.5 37 0.00081 38.4 0.3 37 1-37 218-254 (945)
9 PF02950 Conotoxin: Conotoxin; 20.0 38 0.00083 25.5 0.2 11 6-16 5-15 (75)
10 PF07312 DUF1459: Protein of u 18.1 46 0.001 28.8 0.3 25 1-26 1-25 (84)
No 1
>PRK11372 lysozyme inhibitor; Provisional
Probab=35.03 E-value=18 Score=30.94 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCceehhhhhhhhhhcccceeEEEecccccceeeccccCc
Q psy9043 1 MFAKTSVVILATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQ 41 (566)
Q Consensus 1 mfaktsvvilatvllctssSvFSF~vQnn~n~YL~L~CS~q 41 (566)
|--|..+++++++||.-.|++-. ..+..+++++.-+|.++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs~~~~-~~~~~~~~~~~Y~C~~~ 40 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCSAYNQ-FVERMQTDTLEYQCDEK 40 (109)
T ss_pred CchHHHHHHHHHHHHHHhcCCcc-ccCCCCCCcEEEEeCCc
Confidence 44567778888888755554321 22233578899999773
No 2
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.27 E-value=46 Score=31.58 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=27.0
Q ss_pred ehhhhhhhhhhcccceeEEEecccccceeeccccCccc
Q psy9043 6 SVVILATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQNT 43 (566)
Q Consensus 6 svvilatvllctssSvFSF~vQnn~n~YL~L~CS~qHS 43 (566)
..+++|+||||.+.|+-.|---.....+-+++=.+..+
T Consensus 3 ~~al~a~~~~~~~~s~~A~A~~~e~~~~~~~~~~~~~~ 40 (218)
T PF14283_consen 3 LAALCAAVLLCGGFSVTAFAQGGEPEPEEPQPEATEDS 40 (218)
T ss_pred HHHHHHHHHHHhccCeeEEecCCCCCCccccccccCcc
Confidence 35678889999899987666665566666666666555
No 3
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=23.91 E-value=50 Score=30.93 Aligned_cols=14 Identities=29% Similarity=0.365 Sum_probs=9.6
Q ss_pred hhhhhhhhhhcccc
Q psy9043 7 VVILATVLLCTSSS 20 (566)
Q Consensus 7 vvilatvllctssS 20 (566)
+..+.+||+|+|++
T Consensus 11 ~i~~~~ll~~~~~~ 24 (156)
T PRK15222 11 VIYSVSLLVTASSL 24 (156)
T ss_pred HHhhhhHHhhhccc
Confidence 44566778888766
No 4
>PF15240 Pro-rich: Proline-rich
Probab=23.54 E-value=32 Score=32.49 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=7.4
Q ss_pred hhhhhhhhhhcccce
Q psy9043 7 VVILATVLLCTSSSV 21 (566)
Q Consensus 7 vvilatvllctssSv 21 (566)
+|||.||.|.+-||.
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 355555554444444
No 5
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=21.92 E-value=46 Score=29.93 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=20.6
Q ss_pred hhhhhhhhcccceeEEEec-ccccceeeccccC
Q psy9043 9 ILATVLLCTSSSVFSFFVQ-DAMNQYLPRWCSG 40 (566)
Q Consensus 9 ilatvllctssSvFSF~vQ-nn~n~YL~L~CS~ 40 (566)
.++..+-++...|=++... ..+.+||+++|+.
T Consensus 3 ~~~L~ikAeLeNVt~L~p~~~~~~~~fkvkCt~ 35 (161)
T PF05907_consen 3 KFALQIKAELENVTNLQPVDPDFEWFFKVKCTS 35 (161)
T ss_dssp EEEEEEEEEEESEEEEE---TT--EEEEEEETT
T ss_pred EEEEEEEEEEcCceEEEecCCCCEEEEEEEECC
Confidence 3444455666778888888 7889999999954
No 6
>KOG3159|consensus
Probab=21.70 E-value=18 Score=36.98 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=32.0
Q ss_pred hhhhhhhhhhcccceeEEEeccccccee-eccccCcccccc--cceEEEEEeecC
Q psy9043 7 VVILATVLLCTSSSVFSFFVQDAMNQYL-PRWCSGQNTRLV--NRRICLVIGFNS 58 (566)
Q Consensus 7 vvilatvllctssSvFSF~vQnn~n~YL-~L~CS~qHSR~v--nrriclvigfns 58 (566)
-.+.++||.|+|+++|-=|.- --|| .-.-++.|.++| +.+-|+|||=+.
T Consensus 6 ~~k~~~V~~s~S~~~y~NLAl---E~~l~~~~~~~~~~~Ll~w~N~p~vVIGRhQ 57 (336)
T KOG3159|consen 6 RLKGRFVLQSLSSDPYYNLAL---ENYLYRHKNGPDKHILLLWINDPCVVIGRHQ 57 (336)
T ss_pred hcccceEEEEecCchhhhhHH---HHHHHhhccCCCCeEEEEEeCCceEEEccCC
Confidence 346789999999998743322 2222 234466666665 567799999664
No 7
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.38 E-value=32 Score=29.00 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=3.7
Q ss_pred CCCceeh
Q psy9043 1 MFAKTSV 7 (566)
Q Consensus 1 mfaktsv 7 (566)
|-.|+-+
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 5556644
No 8
>KOG1288|consensus
Probab=20.49 E-value=37 Score=38.36 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCceehhhhhhhhhhcccceeEEEecccccceeecc
Q psy9043 1 MFAKTSVVILATVLLCTSSSVFSFFVQDAMNQYLPRW 37 (566)
Q Consensus 1 mfaktsvvilatvllctssSvFSF~vQnn~n~YL~L~ 37 (566)
.|||||++++++|.+|+.|-.+|++..-.++-.+|.-
T Consensus 218 lfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~ 254 (945)
T KOG1288|consen 218 LFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVP 254 (945)
T ss_pred HHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCC
Confidence 4899999999999999999999999997777666543
No 9
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=19.99 E-value=38 Score=25.49 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=0.0
Q ss_pred ehhhhhhhhhh
Q psy9043 6 SVVILATVLLC 16 (566)
Q Consensus 6 svvilatvllc 16 (566)
-|+|+|.|||-
T Consensus 5 ~vliVavLllt 15 (75)
T PF02950_consen 5 CVLIVAVLLLT 15 (75)
T ss_dssp -----------
T ss_pred hHHHHHHHHHH
Confidence 35555555554
No 10
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=18.08 E-value=46 Score=28.76 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=16.6
Q ss_pred CCCceehhhhhhhhhhcccceeEEEe
Q psy9043 1 MFAKTSVVILATVLLCTSSSVFSFFV 26 (566)
Q Consensus 1 mfaktsvvilatvllctssSvFSF~v 26 (566)
||+|.-+|+ +.+++|.||+-.-+.-
T Consensus 1 MF~Kc~~~l-~l~~f~i~S~q~v~~p 25 (84)
T PF07312_consen 1 MFQKCIIVL-LLCLFCISSSQQVYTP 25 (84)
T ss_pred ChHHHHHHH-HHHHHHHhhcceeecc
Confidence 899977666 4557788777444433
Done!