Query psy9043
Match_columns 566
No_of_seqs 3 out of 5
Neff 1.1
Searched_HMMs 29240
Date Fri Aug 16 17:31:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u9k_A Triggering receptor exp 21.6 98 0.0034 22.4 3.9 35 20-54 74-113 (114)
2 3o81_A Beta-2-microglobulin; I 21.4 66 0.0022 25.4 3.1 13 47-59 41-53 (119)
3 1vl7_A Hypothetical protein AL 20.4 21 0.00071 28.3 -0.1 53 4-56 29-85 (157)
4 1zso_A Hypothetical protein; s 20.3 25 0.00085 30.9 0.4 41 7-49 9-49 (164)
5 3u5c_V S26, YS25, 40S ribosoma 19.6 27 0.00094 28.9 0.5 12 31-42 10-21 (87)
6 3swj_A CHUZ, putative uncharac 19.5 22 0.00075 31.7 -0.1 35 20-55 115-152 (251)
7 3tgv_A Heme-binding protein HU 19.1 24 0.00081 28.4 -0.0 50 5-55 14-67 (148)
8 2h54_A Caspase-1; allosteric s 17.5 24 0.00082 30.4 -0.4 42 11-58 12-53 (178)
9 1q8m_A Triggering receptor exp 15.6 1.6E+02 0.0056 23.3 4.2 40 18-57 77-121 (127)
10 2xzm_Z RPS21E; ribosome, trans 15.6 39 0.0013 28.5 0.5 12 31-42 25-36 (97)
No 1
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=21.56 E-value=98 Score=22.45 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=20.1
Q ss_pred ceeEEEecccc-----cceeeccccCcccccccceEEEEE
Q psy9043 20 SVFSFFVQDAM-----NQYLPRWCSGQNTRLVNRRICLVI 54 (566)
Q Consensus 20 SvFSF~vQnn~-----n~YL~L~CS~qHSR~vnrriclvi 54 (566)
..++|.+++.+ +||--.+.++..+-.+.|+|-||+
T Consensus 74 ~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~i~L~V 113 (114)
T 1u9k_A 74 AMLQVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV 113 (114)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred CEEEEEECCCChHHCEEEEEEEecCCCCceeeeceEEEEE
Confidence 44555555544 455444444444455788888876
No 2
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Probab=21.41 E-value=66 Score=25.41 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=9.8
Q ss_pred cceEEEEEeecCC
Q psy9043 47 NRRICLVIGFNSS 59 (566)
Q Consensus 47 nrriclvigfnss 59 (566)
..-+|+|-||-..
T Consensus 41 ~~L~C~v~gFyP~ 53 (119)
T 3o81_A 41 NVLNCFAAGFHPP 53 (119)
T ss_dssp EEEEEEEEEESSS
T ss_pred EEEEEEEecccCC
Confidence 4567999999653
No 3
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Probab=20.44 E-value=21 Score=28.34 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=29.4
Q ss_pred ceehhhhhhhhhh--cccceeEEEecccccceeeccccCcccccc--cceEEEEEee
Q psy9043 4 KTSVVILATVLLC--TSSSVFSFFVQDAMNQYLPRWCSGQNTRLV--NRRICLVIGF 56 (566)
Q Consensus 4 ktsvvilatvllc--tssSvFSF~vQnn~n~YL~L~CS~qHSR~v--nrriclvigf 56 (566)
...++.||||--- -..|..+|..-....-|+-....++|.|+| |.|+||++.-
T Consensus 29 ~~~~~~LaTv~~dG~P~~~~v~~~~~~~g~~~f~t~~~s~k~~nl~~np~vsl~v~~ 85 (157)
T 1vl7_A 29 EFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFVD 85 (157)
T ss_dssp TCSEEEEEEECTTSCEEEEEEEEEECTTCCEEEEECTTSHHHHHHHHCCEEEEEEEC
T ss_pred hCCEEEEEEECCCCCEEEEEEEEEEcCCCCEEEEEeCccHHHHHHHhCCcEEEEEEc
Confidence 3445666665421 123344444433245565555667788876 5588888753
No 4
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.26 E-value=25 Score=30.86 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=32.1
Q ss_pred hhhhhhhhhhcccceeEEEecccccceeeccccCcccccccce
Q psy9043 7 VVILATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQNTRLVNRR 49 (566)
Q Consensus 7 vvilatvllctssSvFSF~vQnn~n~YL~L~CS~qHSR~vnrr 49 (566)
+|.+++.+-+++..|-++.......+||+++|+. .|-++.+
T Consensus 9 ~~~~~L~i~AelenVt~L~p~~~~~~~fkvkC~~--C~E~~~k 49 (164)
T 1zso_A 9 MKNTVVRIKAELENVKRLFCDDEYLWIFNIRDST--SSLTRDN 49 (164)
T ss_dssp CCCEEEEEEEEEESEEEEECCTTCCEEEEEEETT--SSCEEEE
T ss_pred eEEEEEEEEEEEcCcceeecCCCcEEEEEEEECC--CCcccCC
Confidence 4666777778888899988888889999999975 3455555
No 5
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=19.64 E-value=27 Score=28.86 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=10.0
Q ss_pred cceeeccccCcc
Q psy9043 31 NQYLPRWCSGQN 42 (566)
Q Consensus 31 n~YL~L~CS~qH 42 (566)
--|+||+||..|
T Consensus 10 DLYiPRKCSaTN 21 (87)
T 3u5c_V 10 ELYVPRKCSATN 21 (87)
T ss_dssp SSCCCCCCTTTC
T ss_pred EEEccccccccC
Confidence 579999999765
No 6
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=19.54 E-value=22 Score=31.69 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=23.7
Q ss_pred ceeEEEecccccceeeccccCcccccccc---eEEEEEe
Q psy9043 20 SVFSFFVQDAMNQYLPRWCSGQNTRLVNR---RICLVIG 55 (566)
Q Consensus 20 SvFSF~vQnn~n~YL~L~CS~qHSR~vnr---riclvig 55 (566)
|..+|..- ....|+-.....+|+|+|.+ |.||.+-
T Consensus 115 s~v~~~~~-~g~~~~~~s~~a~h~~NL~~nP~rvSl~v~ 152 (251)
T 3swj_A 115 SYAPFVST-QWGNYIYISEVSEHFNNIKVNPNNIEIMFL 152 (251)
T ss_dssp EEEEEEEE-TTEEEEEEETTSHHHHHHHHSTTCEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEeCchHHHHHHHhCCCeEEEEEE
Confidence 34444433 34567777777999999965 7888773
No 7
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=19.10 E-value=24 Score=28.44 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=28.7
Q ss_pred eehhhhhhhhhh--cccceeEEEecccccceeeccccCcccccccc--eEEEEEe
Q psy9043 5 TSVVILATVLLC--TSSSVFSFFVQDAMNQYLPRWCSGQNTRLVNR--RICLVIG 55 (566)
Q Consensus 5 tsvvilatvllc--tssSvFSF~vQnn~n~YL~L~CS~qHSR~vnr--riclvig 55 (566)
..++.|||+--- -..|...|.. +...-|+-..-..+|+|+|.+ |.||+|.
T Consensus 14 ~~~~~LaT~~~~G~P~~s~v~~~~-~~~~~~~~~s~~~~~~~nl~~~prvsl~v~ 67 (148)
T 3tgv_A 14 RKTLQLATVDAQGRPNVSYAPFVQ-NQEGYFVLISHIARHARNLEVNPQVSIMMI 67 (148)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEEE-ETTEEEEEEETTSHHHHHHHHSCEEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEEEEEE-ECCEEEEEECCccHHHHHHHhCCCeEEEEe
Confidence 345566665321 1234444444 344556655566899999854 7787774
No 8
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=17.46 E-value=24 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=21.7
Q ss_pred hhhhhhcccceeEEEecccccceeeccccCcccccccceEEEEEeecC
Q psy9043 11 ATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQNTRLVNRRICLVIGFNS 58 (566)
Q Consensus 11 atvllctssSvFSF~vQnn~n~YL~L~CS~qHSR~vnrriclvigfns 58 (566)
.+|.+|+..++.....+.. .. .|... ++.-.||+|||||-..
T Consensus 12 ~~~~~c~~~~~~~~~~~~~-~~----~Y~m~-~~~~~~g~ALIInn~~ 53 (178)
T 2h54_A 12 GNVKLCSLEEAQRIWKQKS-AE----IYPIM-DKSSRTRLALIICNEE 53 (178)
T ss_dssp TTSCCCCHHHHHHHC---C-CS----BCCCC-CTTTCCCEEEEEECCC
T ss_pred CceeeCCHHHhhhccccCc-cc----ccCCC-CCCCcCCEEEEEehhh
Confidence 4567787776554333321 11 12222 2334589999998653
No 9
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Probab=15.64 E-value=1.6e+02 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=27.1
Q ss_pred ccceeEEEecccc-----cceeeccccCcccccccceEEEEEeec
Q psy9043 18 SSSVFSFFVQDAM-----NQYLPRWCSGQNTRLVNRRICLVIGFN 57 (566)
Q Consensus 18 ssSvFSF~vQnn~-----n~YL~L~CS~qHSR~vnrriclvigfn 57 (566)
+++.|++-..+.+ +||=-++.++.+++-|-+||-||+.+.
T Consensus 77 s~~~~~LtIs~lq~eDsa~Y~Ca~~~~~~~~~~l~~~v~l~~~~~ 121 (127)
T 1q8m_A 77 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLE 121 (127)
T ss_dssp TTTEEEEEECSCCGGGCEEEEEEECCCTTSCEEECCEEEEEEECC
T ss_pred CCCEEEEEECCCCHHHCEEEEEEEECCCCCccEEEEEEEEEEEee
Confidence 4455555555444 666666666667888889999998653
No 10
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=15.64 E-value=39 Score=28.49 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=10.1
Q ss_pred cceeeccccCcc
Q psy9043 31 NQYLPRWCSGQN 42 (566)
Q Consensus 31 n~YL~L~CS~qH 42 (566)
--|+||+||..+
T Consensus 25 DLYiPRKCSaTN 36 (97)
T 2xzm_Z 25 DAYLPRKCDWSN 36 (97)
T ss_dssp SSSCCCBCTTTC
T ss_pred eEeccccccccC
Confidence 579999999864
Done!