Query psy9043
Match_columns 566
No_of_seqs 3 out of 5
Neff 1.1
Searched_HMMs 13730
Date Fri Aug 16 17:31:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5pa_ b.55.1.1 (A:) Tapp2 {M 21.0 19 0.0014 24.9 1.6 33 20-53 7-39 (126)
2 d1vl7a_ b.45.1.1 (A:) Hypothet 19.9 21 0.0016 25.6 1.8 52 4-55 7-62 (135)
3 d1p4ua_ b.1.10.2 (A:) ADP-ribo 13.1 62 0.0045 25.3 3.1 40 7-46 47-86 (145)
4 d1pjqa1 c.2.1.11 (A:1-113) Sir 10.3 58 0.0042 22.9 1.8 20 32-57 2-21 (113)
5 d2dwya1 b.1.10.2 (A:511-639) A 10.1 39 0.0028 26.0 0.9 41 7-47 31-71 (129)
6 d2arza1 b.45.1.1 (A:2-239) Hyp 8.3 39 0.0028 27.2 0.1 38 19-56 33-72 (238)
7 d2cofa1 b.55.1.1 (A:8-102) KIA 8.0 79 0.0058 20.6 1.7 20 30-53 3-22 (95)
8 d1ny721 b.121.4.2 (2:1-182) Co 6.1 34 0.0025 29.3 -1.4 23 45-67 81-104 (182)
9 d1droa_ b.55.1.1 (A:) beta-spe 5.8 1.4E+02 0.01 20.0 2.1 26 29-54 9-40 (122)
10 d1nwwa_ d.17.4.8 (A:) Limonene 5.7 83 0.006 22.2 0.8 13 35-47 4-16 (145)
No 1
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.00 E-value=19 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=22.7
Q ss_pred ceeEEEecccccceeeccccCcccccccceEEEE
Q psy9043 20 SVFSFFVQDAMNQYLPRWCSGQNTRLVNRRICLV 53 (566)
Q Consensus 20 SvFSF~vQnn~n~YL~L~CS~qHSR~vnrriclv 53 (566)
++=....|+-|.+||..+.+ .+++...||-|++
T Consensus 7 ~~p~~~~~~~~~GyL~k~~~-~~~k~WkrRwFvL 39 (126)
T d1v5pa_ 7 GMPYVDRQNRICGFLDIEDN-ENSGKFLRRYFIL 39 (126)
T ss_dssp SSCCCCCCCCEECCEEEECT-TCSSCEEEEEEEE
T ss_pred CcccccCCCceeeeEEEECC-CCCCCeeEEEEEE
Confidence 33334456667899977665 4577788898877
No 2
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=19.91 E-value=21 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=34.0
Q ss_pred ceehhhhhhhhhh--cccceeEEEecccccceeeccccCcccccccc--eEEEEEe
Q psy9043 4 KTSVVILATVLLC--TSSSVFSFFVQDAMNQYLPRWCSGQNTRLVNR--RICLVIG 55 (566)
Q Consensus 4 ktsvvilatvllc--tssSvFSF~vQnn~n~YL~L~CS~qHSR~vnr--riclvig 55 (566)
++.+.+||||--= -..|+.+|...+..+-|+-+.=..+|+|+|.+ |.||+|.
T Consensus 7 ~~~~~~LaTv~~dG~P~~s~v~y~~~~~~~~~~~~s~~s~h~~Ni~~np~vSl~i~ 62 (135)
T d1vl7a_ 7 EFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEANPLVNVLFV 62 (135)
T ss_dssp TCSEEEEEEECTTSCEEEEEEEEEECTTCCEEEEECTTSHHHHHHHHCCEEEEEEE
T ss_pred hCCEEEEEEeCCCCCEEEEEEEEEEcCCCCEEEEecchHHHHHHHHhCCceEEEEe
Confidence 3455666764321 12356677777666677777777899998755 6888875
No 3
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.11 E-value=62 Score=25.25 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=33.8
Q ss_pred hhhhhhhhhhcccceeEEEecccccceeeccccCcccccc
Q psy9043 7 VVILATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQNTRLV 46 (566)
Q Consensus 7 vvilatvllctssSvFSF~vQnn~n~YL~L~CS~qHSR~v 46 (566)
++|.|+..-++++-+-.|.+|-|-..+++|++.++-+..|
T Consensus 47 ~~i~~~~~N~s~~~i~~f~fqaAVPK~~~L~l~p~Sg~~l 86 (145)
T d1p4ua_ 47 LVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTEL 86 (145)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCB
T ss_pred EEEEEEEEeCCCCchhcEEEEEeCCCccEEEEECCCCCcc
Confidence 5667777777888899999999999999999998887777
No 4
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}
Probab=10.29 E-value=58 Score=22.86 Aligned_cols=20 Identities=35% Similarity=0.793 Sum_probs=12.4
Q ss_pred ceeeccccCcccccccceEEEEEeec
Q psy9043 32 QYLPRWCSGQNTRLVNRRICLVIGFN 57 (566)
Q Consensus 32 ~YL~L~CS~qHSR~vnrriclvigfn 57 (566)
.|||+.- .|+.|.|||||..
T Consensus 2 ~~~Pi~l------~l~~k~vlVvG~G 21 (113)
T d1pjqa1 2 DHLPIFC------QLRDRDCLIVGGG 21 (113)
T ss_dssp CCEEEEE------CCBTCEEEEECCS
T ss_pred CccceEE------EeCCCEEEEECCC
Confidence 3566654 3445678888864
No 5
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.14 E-value=39 Score=25.99 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=32.0
Q ss_pred hhhhhhhhhhcccceeEEEecccccceeeccccCccccccc
Q psy9043 7 VVILATVLLCTSSSVFSFFVQDAMNQYLPRWCSGQNTRLVN 47 (566)
Q Consensus 7 vvilatvllctssSvFSF~vQnn~n~YL~L~CS~qHSR~vn 47 (566)
+||.|+..-.+++.+-.|.+|-|-..++.|++.++-+..|-
T Consensus 31 ~~i~~~~~N~s~~~i~~f~fqaAVPK~~~L~l~p~Sg~~l~ 71 (129)
T d2dwya1 31 LVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELP 71 (129)
T ss_dssp EEEEEEEEECCSSCBEEEEEEEECCTTSBCCBCCCSCSCBC
T ss_pred EEEEEEEecCCCCccccEEEEEECCCccEEEEeCCCCCccC
Confidence 45666666666678899999999999999999888776663
No 6
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.26 E-value=39 Score=27.17 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=26.8
Q ss_pred cceeEEEecccccceeeccccCccccccc--ceEEEEEee
Q psy9043 19 SSVFSFFVQDAMNQYLPRWCSGQNTRLVN--RRICLVIGF 56 (566)
Q Consensus 19 sSvFSF~vQnn~n~YL~L~CS~qHSR~vn--rriclvigf 56 (566)
.|+.+|..-..-+-||-+.=..+|+|+|. .|.+|++.-
T Consensus 33 ~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~ 72 (238)
T d2arza1 33 GSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGE 72 (238)
T ss_dssp EEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEEC
T ss_pred EEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEc
Confidence 45666666544466777777789999985 488888853
No 7
>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.03 E-value=79 Score=20.63 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=11.0
Q ss_pred ccceeeccccCcccccccceEEEE
Q psy9043 30 MNQYLPRWCSGQNTRLVNRRICLV 53 (566)
Q Consensus 30 ~n~YL~L~CS~qHSR~vnrriclv 53 (566)
+++||+.+= ++.-.||-|.+
T Consensus 3 ~s~yl~~~~----~~~WkkR~fvL 22 (95)
T d2cofa1 3 TSSYLNVLV----NSQWKSRWCSV 22 (95)
T ss_dssp TCCEEEEEE----TTEEEEEEEEE
T ss_pred cccchhhhc----CCCceEEEEEE
Confidence 567776552 13455666655
No 8
>d1ny721 b.121.4.2 (2:1-182) Comovirus coat proteins (VP37 and VP23) {CPMV (Cowpea mosaic virus) [TaxId: 12264]}
Probab=6.08 E-value=34 Score=29.33 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=16.1
Q ss_pred cccceEEEEEeecCC-CCCCcCCc
Q psy9043 45 LVNRRICLVIGFNSS-RGEDEDNI 67 (566)
Q Consensus 45 ~vnrriclvigfnss-rgededni 67 (566)
..|--+||.|++||+ ||...-++
T Consensus 81 p~ntG~~Lai~yNS~vrGk~s~d~ 104 (182)
T d1ny721 81 SDNSGCCLMLAINSGVRGKYSTDV 104 (182)
T ss_dssp CTTCCCEEEEEEESEECSSCCCCH
T ss_pred CCCCceEEEEEeccccccceeece
Confidence 346679999999996 55444444
No 9
>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.81 E-value=1.4e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=17.0
Q ss_pred cccceeeccccC------cccccccceEEEEE
Q psy9043 29 AMNQYLPRWCSG------QNTRLVNRRICLVI 54 (566)
Q Consensus 29 n~n~YL~L~CS~------qHSR~vnrriclvi 54 (566)
+|.+||.++-.. ..+|.-.||-|++-
T Consensus 9 ~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~ 40 (122)
T d1droa_ 9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAK 40 (122)
T ss_dssp SEEEEEEEECSCCCCCCTTCCCCCEEEEEEES
T ss_pred ceEEEEEEeecccccCcccCCCCceEEEEEEe
Confidence 467898876532 24566778888773
No 10
>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=5.70 E-value=83 Score=22.21 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.4
Q ss_pred eccccCccccccc
Q psy9043 35 PRWCSGQNTRLVN 47 (566)
Q Consensus 35 ~L~CS~qHSR~vn 47 (566)
|+|||+.+++..+
T Consensus 4 ~~~~~~~~~~~~~ 16 (145)
T d1nwwa_ 4 PRWASKDSAAGAA 16 (145)
T ss_dssp CTTSCCCTTTTCC
T ss_pred CccCCCCCcccCC
Confidence 7888887776554
Done!