BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9046
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 155
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 156 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 106 KVVLVSAEDASTPCS---HFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
K +L S D+S + + I V D NDNRPEF + + S+ E + P +++ +
Sbjct: 73 KYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKV 130
Query: 163 EATDSDE-----NPHLTYKILSGNDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLL 210
ATD+D+ N + Y I+S + + ++F V+ DTG++++ G + Y L+
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLV 190
Query: 211 VQVSD 215
VQ +D
Sbjct: 191 VQAAD 195
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 97 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 154
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 155 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 196
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAAD 195
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 95 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 152
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 153 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 194
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 155
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 156 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 197
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSIA 56
++I++ D ND PEF + + + E G+ + K +A D D ++IA
Sbjct: 96 IVITVTDQNDNRPEFT------QEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 149
Query: 57 LYVLEQD-----GDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVS 111
++ QD +MF+VN T +SV + D +E+ P T VV +
Sbjct: 150 YTIVSQDPELPHKNMFTVNRDTGV---ISVLTSGLD----------RESYPTYTLVVQAA 196
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEF 138
+ + I V D+NDN P F
Sbjct: 197 DLQGEGLSTTAKAVITVKDINDNAPVF 223
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDNRPEF + + S+ E + P +++ + ATD+D+ N + Y I+S
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 181 NDD----DVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ + ++F V+ DTG++++ G + Y L+VQ +D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 45/234 (19%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSIA 56
++I++ D ND PEF + + + E G+ + K +A D D ++IA
Sbjct: 94 IVITVTDQNDNRPEFT------QEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIA 147
Query: 57 LYVLEQD-----GDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVS 111
++ QD +MF+VN T +SV + D +E+ P T VV +
Sbjct: 148 YTIVSQDPELPHKNMFTVNRDTGV---ISVLTSGLD----------RESYPTYTLVVQAA 194
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENP 171
+ + I V D+NDN P F TY+ + EN + + + TL+ TD D+ P
Sbjct: 195 DLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV---NARIATLKVTD-DDAP 250
Query: 172 H-----LTYKILSGNDDDVFAVDDT----GIL-TIQGPLAKGKTVYNLLVQVSD 215
+ Y +++ D V D GIL T +G + K Y L V+V +
Sbjct: 251 NTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVEN 304
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
IKV D+NDN P F K + S+ E + S T +T E D+D+ + +TY+I+ G
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAE--DADDPTVAGHATVTYQIIKG 149
Query: 181 NDDDVFAVDDTG-ILTIQGPLAK-GKTVYNLLVQVSD 215
N + F VDD+G I T + L + ++ Y ++V+ D
Sbjct: 150 N--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 106 KVVLVS---AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
K VL S +E+ S + I V+D NDNRP+F +R S++E + P ++ +
Sbjct: 79 KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREG--VQPGTQVMAV 136
Query: 163 EATDSDE-----NPHLTYKILSGNDDD----VFAVD-DTGILTIQGP-LAKGK-TVYNLL 210
ATD D+ N L+Y IL + ++ +F ++ +TG++++ G L + K Y L
Sbjct: 137 SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLT 196
Query: 211 VQVSD 215
VQ +D
Sbjct: 197 VQATD 201
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 31/161 (19%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSI-------A 56
+ I++ID ND P+F T+D + + E G+ + +A D+D +I +
Sbjct: 100 ITINVIDQNDNRPKF----TQDV--FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS 153
Query: 57 LYVLEQDGD-----MFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVS 111
+L+QD + +F++N T + L +E P T V +
Sbjct: 154 YSILKQDPEEPIPNLFTINRETGVISLIGTGLD-------------REKFPEYTLTVQAT 200
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENII 152
+ + + I++ D NDN P F KTY + EN I
Sbjct: 201 DLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI 241
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
+SEY +K N+ T ++LV+ + S + + VLDVNDN P + + Q
Sbjct: 403 ESEY---VKNNT--YTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQ- 456
Query: 150 NIIITPSPTLLTLEATDSDENPHLTYKI-LSGNDDDVFA--VDDTGILTIQGP---LAKG 203
P P +LT+ D N + YK+ LS D + +D G + P L KG
Sbjct: 457 ----NPEPQVLTISDADIPPNTY-PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKG 511
Query: 204 KTVYNLLVQVSD 215
Y++ V +SD
Sbjct: 512 D--YSIYVLLSD 521
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
I V D NDN+PEF + ++ S+ E + P +++ + ATD+D+ N + Y ILS
Sbjct: 96 ITVTDQNDNKPEFTQEVFKGSVMEGAL--PGTSVMEVTATDADDDVNTYNAAIAYTILSQ 153
Query: 181 N----DDDVFAVD-DTGILTI--QGPLAKGKTVYNLLVQVSD 215
+ D ++F ++ +TG++++ G + Y L+VQ +D
Sbjct: 154 DPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAAD 195
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 106 KVVLVS---AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
K VL S +E+ S + I V+D NDNRP+F +R S++E + P ++ +
Sbjct: 228 KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREG--VQPGTQVMAV 285
Query: 163 EATDSDENPH-----LTYKILSGNDDD----VFAVD-DTGILTIQGP-LAKGK-TVYNLL 210
ATD D+N L+Y IL + ++ +F ++ +TG++++ G L + K Y L
Sbjct: 286 SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLT 345
Query: 211 VQVSD 215
VQ +D
Sbjct: 346 VQATD 350
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSI-------A 56
+ I++ID ND P+F T+D + + E G+ + +A D+D +I +
Sbjct: 249 ITINVIDQNDNRPKF----TQDV--FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS 302
Query: 57 LYVLEQDGD-----MFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVS 111
+L+QD + +F++N T + L + F EY T++ D + +S
Sbjct: 303 YSILKQDPEEPIPNLFTINRETGVISLIGTGLDR-EKF-PEYTLTVQAT---DLEGAGLS 357
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENII 152
E + I++ D NDN P F KTY + EN I
Sbjct: 358 VEGKAI--------IQITDANDNAPIFDPKTYTALVPENEI 390
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
+SEY +K N+ T ++LV+ + S + + VLDVNDN P + + Q
Sbjct: 552 ESEY---VKNNT--YTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQ- 605
Query: 150 NIIITPSPTLLTLEATDSDENPHLTYKI-LSGNDDDVFA--VDDTGILTIQGP---LAKG 203
P P +LT+ D N + YK+ LS D + +D G + P L KG
Sbjct: 606 ----NPEPQVLTISDADIPPNTY-PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKG 660
Query: 204 KTVYNLLVQVSD 215
Y++ V +SD
Sbjct: 661 D--YSIYVLLSD 670
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 47/221 (21%)
Query: 4 LIISIIDVNDIPPEF-EPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIAL----- 57
++I++ID+ND PEF W P E +P G+ + TA+D D AL
Sbjct: 94 IVINVIDMNDNRPEFLHQVWNGSVP------EGSKP-GTYVMTVTAIDADDPNALNGMLR 146
Query: 58 -YVLEQ-----DGDMFSVNNIT--VCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVL 109
+L Q +MF++NN T + +D + AT E +P
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNP------T 200
Query: 110 VSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE 169
+ +T I V DVNDN PEF + T+ + EN + + L TD D+
Sbjct: 201 YGLSNTATAV------ITVTDVNDNPPEFTAMTFYGEVPENRVDV---IVANLTVTDKDQ 251
Query: 170 NPH-----LTYKILSGNDDDVFAV-----DDTGILTIQGPL 200
PH Y+I G+ FA+ + G++T+ P+
Sbjct: 252 -PHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPI 291
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE----NPHLTYKILSGN 181
I V+D+NDNRPEF + + S+ E P ++T+ A D+D+ N L Y+ILS
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEG--SKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 182 ----DDDVFAV-DDTG-ILTIQGPLAKGKT-VYNLLVQVSD 215
++F + ++TG I+T+ L + K Y L++Q +D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE----NPHLTYKILSGN 181
I V+D+NDNRPEF + + S+ E P ++T+ A D+D+ N L Y+ILS
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEG--SKPGTYVMTVTAIDADDPNALNGMLRYRILSQA 153
Query: 182 ----DDDVFAV-DDTG-ILTIQGPLAKGKT-VYNLLVQVSD 215
++F + ++TG I+T+ L + K Y L++Q +D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE----NPHLTYKILSGN 181
I V+D+NDNRPEF + + S+ E P ++T+ A D+D+ N L Y+I+S
Sbjct: 96 INVIDMNDNRPEFLHQVWNGSVPEG--SKPGTYVMTVTAIDADDPNALNGMLRYRIVSQA 153
Query: 182 ----DDDVFAV-DDTG-ILTIQGPLAKGKT-VYNLLVQVSD 215
++F + ++TG I+T+ L + K Y L++Q +D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 107 VVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRT-SIQENIIITPSPTLLTLEAT 165
+++ + ED+ + + I+V DVNDN P+F+ Y+ ++ E+I + S +L ++A
Sbjct: 293 LIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTS--ILRVKAM 350
Query: 166 DSDENPHLTYKILSGNDDDVFAVDDTGIL 194
DSD + + L DD FAVD GI+
Sbjct: 351 DSDSGSNAEIEYLVS--DDHFAVDSNGII 377
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLE-IEEEQPIGSLLGKFTALDKDSSIAL---YV 59
L I + DVND P+FE P+Y ++E+ P+G+ + + A+D DS Y+
Sbjct: 310 LTIRVTDVNDNAPKFEL------PDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYL 363
Query: 60 LEQDGDMFSVNNITVCEFQLSVD 82
+ D N I V QL D
Sbjct: 364 VSDDHFAVDSNGIIVNNKQLDAD 386
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 123 RVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGND 182
RV I V DVND P F ++ + P+ + TL+A D D + ++ Y I+
Sbjct: 96 RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT 155
Query: 183 DDVFAVDD-TGILTIQG 198
F VD+ +G++ +G
Sbjct: 156 GGRFEVDERSGVVRTRG 172
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKDSSIALYVL--EQDGDMFSVN-NITVCEFQLSVDLAA 85
YLL I E+ P+GS + + A D D+ ++ + E+ F+V + V + +D
Sbjct: 17 YLL-ISEDTPVGSSVTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 86 ADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRT 145
F E++ + D + V+ +VNI+V DVNDN P F ++ Y
Sbjct: 76 KSEFTVEFSVS-------DHQGVITR-----------KVNIQVGDVNDNAPTFHNQPYSV 117
Query: 146 SIQENIIITPSPT-LLTLEATDSD 168
I EN TP T + + ATD D
Sbjct: 118 RIPEN---TPVGTPIFIVNATDPD 138
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKDSSIALYVL--EQDGDMFSVN-NITVCEFQLSVDLAA 85
YLL I E+ P+GS + + A D D+ ++ + E+ F+V + V + +D
Sbjct: 16 YLL-ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET 74
Query: 86 ADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRT 145
F E++ + D + V+ +VNI+V DVNDN P F ++ Y
Sbjct: 75 KSEFTVEFSVS-------DHQGVITR-----------KVNIQVGDVNDNAPTFHNQPYSV 116
Query: 146 SIQENIIITPSPT-LLTLEATDSD 168
I EN TP T + + ATD D
Sbjct: 117 RIPEN---TPVGTPIFIVNATDPD 137
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKDSSIALYVL--EQDGDMFSVN-NITVCEFQLSVDLAA 85
YLL I E+ P+GS + + A D D+ ++ + E+ F+V + V + +D
Sbjct: 17 YLL-ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 86 ADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRT 145
F E++ + D + V+ +VNI+V DVNDN P F ++ Y
Sbjct: 76 KSEFTVEFSVS-------DHQGVITR-----------KVNIQVGDVNDNAPTFHNQPYSV 117
Query: 146 SIQENIIITPSPT-LLTLEATDSD 168
I EN TP T + + ATD D
Sbjct: 118 RIPEN---TPVGTPIFIVNATDPD 138
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 37/228 (16%)
Query: 4 LIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD------SSIAL 57
II + D+ND PEF + P Y + E +G+ + TA D D S+ +
Sbjct: 92 FIIKVQDINDNAPEF-----LNGP-YHATVPEMSILGTSVTNVTATDADDPVYGNSAKLV 145
Query: 58 YVLEQDGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDAST 117
Y + + FS+ E + ++ A N E + +V++ A+D
Sbjct: 146 YSILEGQPYFSI------EPETAIIKTALPNMDREAK---------EEYLVVIQAKDMGG 190
Query: 118 PCSHFR----VNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHL 173
+ + + DVNDN P+F Y S+ E++++ + + D EN
Sbjct: 191 HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQS 250
Query: 174 TYKILSGNDDDVF-----AVDDTGILTIQGPL-AKGKTVYNLLVQVSD 215
+Y I+ G+ +F A G++ ++ PL + K Y L V+ ++
Sbjct: 251 SYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 26/144 (18%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKDSSIALYVL--EQDGDMFSVN-NITVCEFQLSVDLAA 85
YLL I E+ P+GS + + A D D+ ++ + E+ F+V + V + +D
Sbjct: 17 YLL-ISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRET 75
Query: 86 ADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRT 145
F E++ + D + V+ +VNI+V VNDN P F ++ Y
Sbjct: 76 KSEFTVEFSVS-------DHQGVITR-----------KVNIQVGGVNDNAPTFHNQPYSV 117
Query: 146 SIQENIIITPSPT-LLTLEATDSD 168
I EN TP T + + ATD D
Sbjct: 118 RIPEN---TPVGTPIFIVNATDPD 138
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 118 PCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPH 172
P S F V KV D+NDN PEF + Y ++ E + S ++ + A+D+D+ +
Sbjct: 89 PPSEFIV--KVQDINDNPPEFLHEIYHANVPERSNVGTS--VIQVTASDADDPTYGNSAK 144
Query: 173 LTYKILSGNDDDVFAVD-DTGILTIQGPL--AKGKTVYNLLVQVSD 215
L Y IL G F+V+ TGI+ P + K Y++++Q D
Sbjct: 145 LVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKD 188
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDEN 170
I V D NDNRPEF + + S+ E + P +++ + ATD+D++
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAV--PGTSVMKVSATDADDD 140
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 123 RVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSP---TLLTLEATDSD----ENPHLTY 175
R++I V+D NDNRP FK Y + E SP T++ + A D+D +N L Y
Sbjct: 92 RLDISVIDQNDNRPMFKEGPYVGHVMEG-----SPTGTTVMRMTAFDADDPSTDNALLRY 146
Query: 176 KIL 178
IL
Sbjct: 147 NIL 149
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGND-----DDVF 186
NDNRP FK I EN + S ++ L ATD+D + + + G +F
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTS--VIQLHATDADIGSNAEIRYIFGAQVAPATKRLF 65
Query: 187 AVDD-TGILTIQGPLAKGKT-VYNLLVQVSD 215
A+++ TG++T+Q L + +T ++ + V SD
Sbjct: 66 ALNNTTGLITVQRSLDREETAIHKVTVLASD 96
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 123 RVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGND 182
RV I V DVND P F ++ + P+ + TL+A D D + ++ Y I+
Sbjct: 91 RVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT 150
Query: 183 DDVFAVDD-TGILTIQG 198
F VD+ +G++ +G
Sbjct: 151 GGRFEVDERSGVVRTRG 167
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 121 HFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL------EATDSDENP--H 172
+ V I V D NDN P FK ++Y ++ E +TP T + ATD D+ P
Sbjct: 110 YHEVRIVVRDRNDNSPTFKHESYYATVNE---LTPVGTTIFTGFSGDNGATDIDDGPNGQ 166
Query: 173 LTYKILSGNDD----DVFAVD--DTGILTIQGPL-AKGKTVYNLLVQVSD 215
+ Y I +D D F + TG + ++ L + KT Y +++Q +D
Sbjct: 167 IEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAND 216
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSG 180
IK+ D+NDN P F Y ++ E + ++ + ATD+D+ + + Y IL G
Sbjct: 94 IKIHDINDNEPIFTKDVYTATVPE--MADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Query: 181 NDDDVFAVD-DTGIL 194
F+V+ +TGI+
Sbjct: 152 Q--PYFSVESETGII 164
>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
Length = 433
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 158 TLLTLEATDSDENPH--LTYKILSGNDDDVFAVDDTGILTIQGPLAKGKTVYN 208
T TL +DSD+ H L+ K+ GN DD+ I I P K +++ N
Sbjct: 103 TAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKN 155
>pdb|3IAG|C Chain C, Csl (Rbp-Jk) Bound To Hes-1 Nonconsensus Site
Length = 422
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 158 TLLTLEATDSDENPH--LTYKILSGNDDDVFAVDDTGILTIQGPLAKGKTVYN 208
T TL +DSD+ H L+ K+ GN DD+ I I P K +++ N
Sbjct: 98 TAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKN 150
>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 434
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 158 TLLTLEATDSDENPH--LTYKILSGNDDDVFAVDDTGILTIQGPLAKGKTVYN 208
T TL +DSD+ H L+ K+ GN DD+ I I P K +++ N
Sbjct: 103 TAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKN 155
>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
Length = 427
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 158 TLLTLEATDSDENPH--LTYKILSGNDDDVFAVDDTGILTIQGPLAKGKTVYN 208
T TL +DSD+ H L+ K+ GN DD+ I I P K +++ N
Sbjct: 103 TAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKN 155
>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
pdb|1VL4|B Chain B, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
Length = 447
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 114 DASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHL 173
D T F V IKVL + K+ T+RT + EN L L+ DS+E +
Sbjct: 53 DQYTDAGKFNVEIKVLK------DGKTGTFRTQVLENPEKCFEEALSNLQVKDSEEKEYF 106
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 128 VLDVNDNRPEFKSKTYRTSIQENIIITPSP---TLLTLEATDSD----ENPHLTYKI 177
V+D NDNRP F+ Y + E SP T++ + A D+D +N L Y I
Sbjct: 98 VIDQNDNRPIFREGPYIGHVMEG-----SPTGTTVMRMTAFDADDPATDNALLRYNI 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,360,426
Number of Sequences: 62578
Number of extensions: 259265
Number of successful extensions: 523
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 73
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)