RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9046
(215 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 54.6 bits (132), Expect = 3e-10
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 142 TYRTSIQENIIITPSPT-LLTLEATDSDE--NPHLTYKILSGNDDDVFAVD-DTGILTIQ 197
+Y S+ EN P T +LT+ ATD D N +TY I+SGN+D +F++D TG +T
Sbjct: 1 SYEVSVPEN---APPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTA 57
Query: 198 GPL-AKGKTVYNLLVQVSD 215
PL + ++ Y L V +D
Sbjct: 58 KPLDREEQSSYTLTVTATD 76
Score = 41.1 bits (97), Expect = 3e-05
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 31/117 (26%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKDSSIA---LYVLEQDGD--MFSVN----NITVCEFQL 79
Y + + E P G+++ +A D DS Y + + +FS++ IT
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITT---AK 58
Query: 80 SVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTP--CSHFRVNIKVLDVNDN 134
+D QS Y T+ A D P S V I VLDVNDN
Sbjct: 59 PLDREE----QSSYTLTVT-------------ATDGGGPPLSSTATVTITVLDVNDN 98
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 47.3 bits (113), Expect = 2e-07
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 143 YRTSIQENIIITPSPTLLTLEATDSDENPH--LTYKILSGNDDDVFAVD-DTGILTIQGP 199
Y S+ EN +LT+ ATD+D P+ + Y IL G F +D DTG L+ P
Sbjct: 1 YSASVPENA--PVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKP 58
Query: 200 L-AKGKTVYNLLVQVSD 215
L + Y L V +D
Sbjct: 59 LDRESIGEYELTVLATD 75
Score = 30.7 bits (70), Expect = 0.13
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 29 YLLEIEEEQPIGSLLGKFTALDKD----SSIALYVLEQD-GDMFSVNNIT 73
Y + E P+G+ + TA D D I +L G F ++ T
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDT 50
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 43.9 bits (104), Expect = 2e-06
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 164 ATDSDE--NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-AKGKTVYNLLVQVSD 215
ATD+D N +TY ILSGNDD +F++D +TG +T PL + + Y L V+ +D
Sbjct: 2 ATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATD 57
Score = 30.4 bits (69), Expect = 0.16
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 110 VSAEDASTP--CSHFRVNIKVLDVNDNRP 136
V A D P S V I VLDVNDN P
Sbjct: 53 VEATDGGGPPLSSTATVTITVLDVNDNAP 81
>gnl|CDD|181629 PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional.
Length = 380
Score = 29.1 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 29 YLLEIEEEQPIGSLL--GKFTALDKDSSIALYVLEQD 63
Y L IEE L GK D+D + LY L Q+
Sbjct: 190 YQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQE 226
>gnl|CDD|133405 cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of
putative transcription regulators from the MerR
superfamily. Putative helix-turn-helix (HTH) MerR-like
transcription regulators (subgroup 2). Based on sequence
similarity, these proteins are predicted to function as
transcription regulators that mediate responses to
stress in eubacteria. They belong to the MerR
superfamily of transcription regulators that promote
transcription of various stress regulons by
reconfiguring the operator sequence located between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of two distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their N-terminal domains are
homologous and contain a DNA-binding winged HTH motif,
while the C-terminal domains are often dissimilar and
bind specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 219
Score = 28.5 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 20 PPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSVNN 71
PW+ +EP L E + S G AL + ++AL +LE DGD V +
Sbjct: 88 GPWSTEEPGTALLAELQ----SEFGDERALAR--AVALGLLEPDGDRVLVPS 133
>gnl|CDD|177875 PLN02230, PLN02230, phosphoinositide phospholipase C 4.
Length = 598
Score = 28.1 bits (62), Expect = 3.5
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 96 TIKENSPGDTKV-VLVSAEDASTPCSHFRVNIKVLDV---------NDNRPEFKSKTYRT 145
+IK N+ +K V+++ ED TP F+V + ++ EF S
Sbjct: 191 SIKANAFAISKYPVIITLEDHLTPKLQFKVAKMITQTFGDMLYYHDSEGCQEFPSPE--- 247
Query: 146 SIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVDDTGILTIQGPLAKGKT 205
++E I+I+ P LEA D+ E + +D+DV+ + +++ Q L K +
Sbjct: 248 ELKEKILISTKPPKEYLEANDAKEKD--NGEKGKDSDEDVWGKEPEDLISTQSDLDKVTS 305
Query: 206 VYNLLVQ 212
N L Q
Sbjct: 306 SVNDLNQ 312
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 27.3 bits (61), Expect = 8.1
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 31 LEIEEEQPIGSLLGKFTALDKDSSIALY---VLEQDGDMFSVNNITVCEFQLSVDLAAAD 87
LE + ++ L + +A + + +LE F +I QL DL
Sbjct: 300 LEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIE----QLQADLDQLP 355
Query: 88 NFQSEYNATIKE 99
+ +SE
Sbjct: 356 SIRSELEEVEAR 367
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,753,617
Number of extensions: 994212
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 19
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)