RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9046
(215 letters)
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 106 bits (268), Expect = 4e-28
Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 51/236 (21%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIA------ 56
II + D+ND PEF Y + E +G+ + TA D D +
Sbjct: 91 EFIIKVQDINDNAPEFL------NGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKL 144
Query: 57 LYVLEQDGDMFSVN----NITVCEFQLSVDLAAAD-NFQSEYNATIKENSPGDTKVVLVS 111
+Y + + FS+ I + D + EY V++
Sbjct: 145 VYSILEGQPYFSIEPETAIIKTALPNM-------DREAKEEYL-------------VVIQ 184
Query: 112 AEDASTPC----SHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDS 167
A+D + + + DVNDN P+F Y S+ E+ + + ++A D
Sbjct: 185 AKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPED--VVLGTAIGRVKANDQ 242
Query: 168 DENP--HLTYKILSGNDDDVFAVD-----DTGILTIQGPLA-KGKTVYNLLVQVSD 215
D +Y I+ G+ +F + G++ ++ PL + K Y L V+ ++
Sbjct: 243 DIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298
Score = 67.7 bits (166), Expect = 1e-13
Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 45/209 (21%)
Query: 27 PNYLLEIEEEQPIGSLLGKFTALDKDSSIA--LYVLEQDG--DMFSVN----NITVCEFQ 78
N + +EE +L D D Y+L DG +F +N +I +
Sbjct: 4 WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIK-- 61
Query: 79 LSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTPC---SHFRVNIKVLDVNDNR 135
+D + + A D T IKV D+NDN
Sbjct: 62 -RLDREEKAEYT-----------------LTAQAVDFETNKPLEPPSEFIIKVQDINDNA 103
Query: 136 PEFKSKTYRTSIQENIIITPSPTL-LTLEATDSDE-----NPHLTYKILSGNDDDVFAVD 189
PEF + Y ++ E + T + ATD+D+ + L Y IL G F+++
Sbjct: 104 PEFLNGPYHATVPEM---SILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIE 158
Query: 190 -DTG-ILTIQGPLAKGKT-VYNLLVQVSD 215
+T I T + + Y +++Q D
Sbjct: 159 PETAIIKTALPNMDREAKEEYLVVIQAKD 187
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS 53
TL +++ DVND PP+F + Y + E+ +G+ +G+ A D+D
Sbjct: 199 TTLTVTLTDVNDNPPKFA------QSLYHFSVPEDVVLGTAIGRVKANDQDI 244
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 101 bits (254), Expect = 3e-25
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 54/241 (22%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD------SSIA 56
++I++ID+ND PEF + + E G+ + TA+D D +
Sbjct: 93 DIVINVIDMNDNRPEF------LHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 57 LYVLEQD-----GDMFSVNNITVCEFQLSVDLAAADNF--QSEYNATIKENSPGDTKVVL 109
+L Q +MF++NN T ++ L + +Y ++
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAAGL----DREKVQQYT-------------LI 189
Query: 110 VSAEDASTP-----CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEA 164
+ A D + I V DVNDN PEF + T+ + EN + L
Sbjct: 190 IQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN---RVDVIVANLTV 246
Query: 165 TDSDE----NPHLTYKILSGNDDDVFAVD-----DTGILTIQGPLA-KGKTVYNLLVQVS 214
TD D+ + Y+I G+ FA+ + G++T+ P+ + ++ L V
Sbjct: 247 TDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAE 306
Query: 215 D 215
+
Sbjct: 307 N 307
Score = 93.6 bits (233), Expect = 2e-22
Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 47/231 (20%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIA---LYV 59
T+ +++IDVN+ P F P ++ EE G++L TA D D + Y
Sbjct: 324 TVSVTVIDVNE-NPYFAPN------PKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYT 376
Query: 60 LEQD-GDMFSVN----NITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAED 114
D + ++ IT +D + + + YNAT A D
Sbjct: 377 KLSDPANWLKIDPVNGQITT---IAVLDRESPNVKNNIYNAT-------------FLASD 420
Query: 115 ASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPH 172
P + I +LD+NDN P+ E P P + + A D D +P+
Sbjct: 421 NGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCET----PEPNSINITALDYDIDPN 474
Query: 173 -----LTYKILSGNDDDVFAVDDT--GILTIQGPL-AKGKTVYNLLVQVSD 215
+ + ++ + + +Y + + ++D
Sbjct: 475 AGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITD 525
Score = 90.9 bits (226), Expect = 2e-21
Identities = 52/233 (22%), Positives = 86/233 (36%), Gaps = 38/233 (16%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS-----SIA 56
T +I++ DVND PPEF + E+ E + ++ T DKD A
Sbjct: 207 ATAVITVTDVNDNPPEFTA------MTFYGEVPENRV-DVIVANLTVTDKDQPHTPAWNA 259
Query: 57 LYVLEQ--DGDMFSVN-NITVCEFQLSVDLAAADNF--QSEYNATIK-ENSPGDTKVVLV 110
Y + F++ + + ++V +F + T+ EN K +
Sbjct: 260 AYRISGGDPTGRFAILTDPNSNDGLVTVVKPI--DFETNRMFVLTVAAENQVPLAKGIQH 317
Query: 111 SAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSD-- 168
+ +T V++ V+DVN+N P F +E + L TL A D D
Sbjct: 318 PPQSTAT------VSVTVIDVNEN-PYFAPNPKIIRQEEG--LHAGTMLTTLTAQDPDRY 368
Query: 169 ENPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-----AKGKTVYNLLVQVSD 215
++ Y LS + + +D G +T L +YN SD
Sbjct: 369 MQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASD 420
Score = 49.6 bits (119), Expect = 2e-07
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 35/152 (23%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSS------I 55
GTL I ++D+ND P+ P E E S+ TALD D
Sbjct: 430 GTLQIYLLDINDNAPQVLPQEA--------ETCETPEPNSI--NITALDYDIDPNAGPFA 479
Query: 56 ALYVLEQDGD--MFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAE 113
L +++N + QL++ + + Y V +
Sbjct: 480 FDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLE--AGIYE-------------VPIIIT 524
Query: 114 DASTPC--SHFRVNIKVLDVNDNRPEFKSKTY 143
D+ P + + +KV + N +
Sbjct: 525 DSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 35.8 bits (83), Expect = 0.007
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDD----DVFAVD-DTGILTIQG 198
++ EN + P L SD +N L Y + D +F ++ +G L++
Sbjct: 8 NLPEN---SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 199 PLAKGKT-VYNLLVQVSD 215
PL + ++L D
Sbjct: 65 PLDRELIARFHLRAHAVD 82
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 97.8 bits (244), Expect = 1e-24
Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 43/230 (18%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIAL---YV 59
+II + DVND PP F ++ P + + A D D+ + V
Sbjct: 91 RVIILVKDVNDEPPYF----INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIV 146
Query: 60 LEQDGDMFSVNNITVCEFQLSVDLAAADNF--QSEYNATIKENSPGDTKVVLVSAEDAST 117
++ G F V+ + V D F EY +K AED +
Sbjct: 147 RDRTGGRFEVDERSG-----VVRTRGTDLFQLDMEYVLYVK-------------AEDQNG 188
Query: 118 PCSHFR------VNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENP 171
R + ++ P+F +Y I EN +++++A +
Sbjct: 189 KVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPEN--QKKDSDIISIKAKSFA-DR 244
Query: 172 HLTYKIL-SGNDDDVFAVD-DTGILTIQGPL----AKGKTVYNLLVQVSD 215
+ Y + G F + +GI+ + L + VY+L+V ++
Sbjct: 245 EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 294
Score = 82.8 bits (205), Expect = 4e-19
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 107 VVLVSAEDASTP--CSHFRVNIKVLDVNDNRPEF--KSKTYRTSIQENIIITPSPTLLTL 162
V++ + + + RV I V DVND P F + + +Q N P+ + TL
Sbjct: 73 VIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN--APPNTPVFTL 130
Query: 163 EATDSDENPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-AKGKTVYNLLVQVSD 215
+A D D + ++ Y I+ F VD +G++ +G + Y L V+ D
Sbjct: 131 QARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAED 185
Score = 55.5 bits (134), Expect = 1e-09
Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 24/138 (17%)
Query: 2 GTLIISI-IDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVL 60
T + I P+F P+Y EI E Q S + A Y L
Sbjct: 197 STPEERLSIVGGKRAPQFY------MPSYEAEIPENQKKDSDIISIKAKSFADREIRYTL 250
Query: 61 EQDGD---MFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDAST 117
+ G F++ + + A E + ++V+A + S
Sbjct: 251 KAQGQGAGTFNIGPTS-------GIVKLAKELDFE------DLRQPHVYSLIVTATEDSG 297
Query: 118 P-CSHFRVNIKVLDVNDN 134
+ + I+V DVNDN
Sbjct: 298 GFSTSVDLTIRVTDVNDN 315
Score = 35.1 bits (81), Expect = 0.012
Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 18/79 (22%)
Query: 155 PSPTLLTLEATDSDE--NPHLTYKILSGNDDDVFAVDD---------TGILTIQGPL--- 200
+E T++D +++ D + F + D G + ++
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 201 ----AKGKTVYNLLVQVSD 215
K + ++ +
Sbjct: 62 ELGPEKTIDFWVIITNMGH 80
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 100 bits (250), Expect = 1e-24
Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 59/242 (24%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSI 55
+ I++ID ND P+F + + + E G+ + +A D+D +
Sbjct: 248 EITINVIDQNDNRPKF------TQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 301
Query: 56 ALYVLEQD-----GDMFSVNN----ITVCEFQLSVDLAAADNF--QSEYNATIKENSPGD 104
+ +L+QD ++F++N I++ L + EY
Sbjct: 302 SYSILKQDPEEPIPNLFTINRETGVISLIGTGL--------DREKFPEYT---------- 343
Query: 105 TKVVLVSAEDASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
+ V A D + I++ D NDN P F KTY + EN + L
Sbjct: 344 ---LTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN---EIGFEVQRL 397
Query: 163 EATDSDE---NPHLTYKILSGNDDDVFAVD-----DTGILTIQGPL-AKGKTVYNLLVQV 213
TD D + N+ F + + GILT L + + Y L + V
Sbjct: 398 SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITV 457
Query: 214 SD 215
+
Sbjct: 458 EN 459
Score = 96.1 bits (239), Expect = 3e-23
Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 41/226 (18%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS---SIALYV 59
T+ +++ DVN+ P F P +++ E+ G + A D D Y
Sbjct: 473 TVTVTVEDVNE-APFFVPA------VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF 525
Query: 60 LEQD-GDMFSVN----NITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAED 114
+ D +VN +T ++D + + Y + D
Sbjct: 526 IGNDPARWLTVNKDNGIVTG---NGNLDRESEYVKNNTYTVI-------------MLVTD 569
Query: 115 ASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDEN-P 171
+ + VLDVNDN P + + Q P P +LT+ D N
Sbjct: 570 DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN-----PEPQVLTISDADIPPNTY 624
Query: 172 HLTYKILSGNDDDVFAVDD-TGILTIQGPL-AKGKTVYNLLVQVSD 215
+ G+D A D G + P K Y++ V +SD
Sbjct: 625 PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 670
Score = 90.7 bits (225), Expect = 2e-21
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS-----SIA 56
G II I D ND P F+P Y + E IG + + + D D A
Sbjct: 360 GKAIIQITDANDNAPIFDP------KTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQA 412
Query: 57 LYVLE-QDGDMFSVN-NITVCEFQLSVDLAAADNF--QSEYNATIK-ENSPGDTKVVLVS 111
+Y + +G F++ + + L+ A +F + +Y I EN+ + + S
Sbjct: 413 VYKIRVNEGGFFNITTDPESNQGILTT--AKGLDFELRKQYVLQITVENAEPFSVPLPTS 470
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSD--E 169
+ V + V DVN+ P F R + E+ ++ +++L A D D +
Sbjct: 471 ----TAT-----VTVTVEDVNEA-PFFVPAVSRVDVSED--LSRGEKIISLVAQDPDKQQ 518
Query: 170 NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-----AKGKTVYNLLVQVSD 215
L+Y I + + V+ D GI+T G L Y +++ V+D
Sbjct: 519 IQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD 569
Score = 77.2 bits (190), Expect = 1e-16
Identities = 37/224 (16%), Positives = 57/224 (25%), Gaps = 19/224 (8%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEI-EEEQPIGSLLGKFTALDKDSSIALYVLE 61
+ DV+ P F Y+ + E G LGK D +
Sbjct: 22 VVPSINADVSGCKPGFS------SAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDV 75
Query: 62 QDGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSH 121
D F V + V L F + V +
Sbjct: 76 GDSR-FRVLPDGTVLVKRHVKLHKDTKFTISTWDA-RGIKHSTNIAVASKRHRSGEEAHS 133
Query: 122 FRVNIKVLDVNDNRPEFK-SKTYRTSIQENIII---TPSPTLLTLEATDSDENPHLTYKI 177
+ VL + K K + P P L ++ D + Y I
Sbjct: 134 RSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSI 193
Query: 178 LSGNDD----DVFAVD-DTGILTIQGPLAK-GKTVYNLLVQVSD 215
D VF ++ +TG + + PL + Y L
Sbjct: 194 TGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVS 237
Score = 44.1 bits (104), Expect = 2e-05
Identities = 29/166 (17%), Positives = 45/166 (27%), Gaps = 31/166 (18%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLE 61
GTLI+ ++DVND P P + + + +P T D D
Sbjct: 579 GTLILHVLDVNDNGPVPSP------RVFTMCDQNPEPQ-----VLTISDADIP------- 620
Query: 62 QDGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTK-----VVLVSAEDAS 116
+ + LS + + T SP + V DA
Sbjct: 621 PNTYPYK--------VSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQ 672
Query: 117 TPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
VN V + + K I++ L L
Sbjct: 673 NNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLALL 718
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 99.3 bits (248), Expect = 2e-24
Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 35/223 (15%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS---SIALYV 59
T+ +++ DVN+ P F P +++ E+ G + A D D Y
Sbjct: 324 TVTVTVEDVNE-APFFVPA------VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF 376
Query: 60 LEQD-GDMFSVNNIT-VCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDAST 117
+ D +VN + ++D + + Y + D
Sbjct: 377 IGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVI-------------MLVTDDGV 423
Query: 118 P--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDEN-PHLT 174
+ + VLDVNDN P + + Q P P +LT+ D N
Sbjct: 424 SVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN-----PEPQVLTISDADIPPNTYPYK 478
Query: 175 YKILSGNDDDVFAVDD-TGILTIQGPLA-KGKTVYNLLVQVSD 215
+ G+D A D G + P K Y++ V +SD
Sbjct: 479 VSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 521
Score = 97.8 bits (244), Expect = 7e-24
Identities = 50/242 (20%), Positives = 86/242 (35%), Gaps = 59/242 (24%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSI 55
+ I++ID ND P+F + + + E G+ + +A D+D +
Sbjct: 99 EITINVIDQNDNRPKFT------QDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152
Query: 56 ALYVLEQD-----GDMFSVNN----ITVCEFQLSVDLAAADNF--QSEYNATIKENSPGD 104
+ +L+QD ++F++N I++ L + EY
Sbjct: 153 SYSILKQDPEEPIPNLFTINRETGVISLIGTGL--------DREKFPEYT---------- 194
Query: 105 TKVVLVSAEDASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
+ V A D + I++ D NDN P F KTY + EN + L
Sbjct: 195 ---LTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN---EIGFEVQRL 248
Query: 163 EATDSDE---NPHLTYKILSGNDDDVFAVD-----DTGILTIQGPL-AKGKTVYNLLVQV 213
TD D + N+ F + + GILT L + + Y L + V
Sbjct: 249 SVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITV 308
Query: 214 SD 215
+
Sbjct: 309 EN 310
Score = 89.3 bits (222), Expect = 5e-21
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS-----SIA 56
G II I D ND P F+P Y + E + G + + + D D A
Sbjct: 211 GKAIIQITDANDNAPIFDP------KTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQA 263
Query: 57 LYVLE-QDGDMFSVN-NITVCEFQLSVDLAAADNF--QSEYNATIK-ENSPGDTKVVLVS 111
+Y + +G F++ + + L+ A +F + +Y I EN+ + + S
Sbjct: 264 VYKIRVNEGGFFNITTDPESNQGILTT--AKGLDFELRKQYVLQITVENAEPFSVPLPTS 321
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSD--E 169
+ V + V DVN+ P F R + E+ ++ +++L A D D +
Sbjct: 322 ----TAT-----VTVTVEDVNEA-PFFVPAVSRVDVSED--LSRGEKIISLVAQDPDKQQ 369
Query: 170 NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-----AKGKTVYNLLVQVSD 215
L+Y I + + V+ D GI+T G L Y +++ V+D
Sbjct: 370 IQKLSYFIGN-DPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTD 420
Score = 41.5 bits (98), Expect = 1e-04
Identities = 25/143 (17%), Positives = 39/143 (27%), Gaps = 31/143 (21%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLE 61
GTLI+ ++DVND P P + + + +P T D D
Sbjct: 430 GTLILHVLDVNDNGPVPSP------RVFTMCDQNPEPQ-----VLTISDADIP------- 471
Query: 62 QDGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTK-----VVLVSAEDAS 116
+ + LS + + T SP + V DA
Sbjct: 472 PNTYPYK--------VSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQ 523
Query: 117 TPCSHFRVNIKVLDVNDNRPEFK 139
VN V + +
Sbjct: 524 NNPQLTVVNATVCSCEGKAIKCQ 546
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 135 RPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDD----DVFAVD- 189
++ + S E P P L ++ D + Y I D VF ++
Sbjct: 5 HHDWVIPPIKVSENER---GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEW 61
Query: 190 DTGILTIQGPLAK-GKTVYNLLVQVSD 215
+TG + + PL + Y L
Sbjct: 62 ETGWMLVTRPLDREEYDKYVLSSHAVS 88
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 96.6 bits (241), Expect = 2e-23
Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 59/242 (24%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSI 55
++I++ D ND PEF + + + E G+ + K +A D D ++I
Sbjct: 93 EIVITVTDQNDNRPEFT------QEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Query: 56 ALYVLEQD-----GDMFSVNN----ITVCEFQLSVDLAAADNF--QSEYNATIKENSPGD 104
A ++ QD +MF+VN I+V L + Y
Sbjct: 147 AYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL--------DRESYPTYT---------- 188
Query: 105 TKVVLVSAEDASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTL 162
++V A D + + I V D+NDN P F TY+ + EN + + TL
Sbjct: 189 ---LVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN---EVNARIATL 242
Query: 163 EATDSDE----NPHLTYKILSGNDDDVFAVDD----TGILTIQGPL-AKGKTVYNLLVQV 213
+ TD D Y +++ D V D GIL L + K Y L V+V
Sbjct: 243 KVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRV 302
Query: 214 SD 215
+
Sbjct: 303 EN 304
Score = 90.5 bits (225), Expect = 2e-21
Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 41/227 (18%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS---SIALYV 59
T+ + ++DVN+ P F P +E+ E+ +G + +TA + D+ Y
Sbjct: 318 TVTVDVVDVNE-APIFMPA------ERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYR 370
Query: 60 LEQD-GDMFSVNNIT-VCEFQLSVDL-AAADNFQSEYNATIKENSPGDTKVVLVSAEDAS 116
+ +D + +N T + +D A S Y A + A D
Sbjct: 371 IWRDTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVAL-------------IIATDDG 417
Query: 117 TP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENP--- 171
+P + + +LDVNDN P + + + + P P ++T D D P
Sbjct: 418 SPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRN-----PQPHIIT--ILDPDLPPNTS 470
Query: 172 HLTYKILSGNDDD--VFAVDDTG-ILTIQGPLAKGKTVYNLLVQVSD 215
T ++ G + + D L +Q Y + ++++D
Sbjct: 471 PFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD 517
Score = 89.3 bits (222), Expect = 6e-21
Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 41/233 (17%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS-----SIA 56
+I++ D+ND P F P Y ++ E + + + D D+ A
Sbjct: 205 AKAVITVKDINDNAPVFNP------STYQGQVPENEV-NARIATLKVTDDDAPNTPAWKA 257
Query: 57 LYVLEQDGD-MFSV-NNITVCEFQLSVDLAAADNF--QSEYNATIK-ENSPGDTKVVLVS 111
+Y + D D F V + T + L A +F + +Y ++ EN ++ S
Sbjct: 258 VYTVVNDPDQQFVVVTDPTTNDGILKT--AKGLDFEAKQQYILHVRVENEEPFEGSLVPS 315
Query: 112 AEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSD--E 169
+ V + V+DVN+ P F R + E+ + + A + D
Sbjct: 316 ----TAT-----VTVDVVDVNEA-PIFMPAERRVEVPED--FGVGQEITSYTAREPDTFM 363
Query: 170 NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL------AKGKTVYNLLVQVSD 215
+ +TY+I + + ++ +TG + + + + Y L+ +D
Sbjct: 364 DQKITYRIWR-DTANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATD 415
Score = 52.7 bits (127), Expect = 2e-08
Identities = 25/151 (16%), Positives = 43/151 (28%), Gaps = 36/151 (23%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLE 61
GTL++ ++DVND P EP N QP T LD D
Sbjct: 425 GTLLLVLLDVNDNAPIPEPR------NMQFCQRNPQPH-----IITILDPDLP------- 466
Query: 62 QDGDMFSVNNITVCEFQLSVDLAAADNF---QSEYNATIKENSPGDTK-----VVLVSAE 113
+ F+ +L+ A+ N+ ++ P + +
Sbjct: 467 PNTSPFT--------AELTHG--ASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLA 516
Query: 114 DASTPCSHFRVNIKVLDVNDNRPEFKSKTYR 144
D +++ V D +
Sbjct: 517 DNQNKDQVTTLDVHVCDCEGTVNNCMKAHHH 547
Score = 36.5 bits (85), Expect = 0.004
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDD----DVFAVD-DTGILTIQG 198
S EN L S+ + + Y I D VF ++ +TG L +
Sbjct: 8 SCPEN---EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQ 64
Query: 199 PLAK-GKTVYNLLVQVSD 215
PL + Y L
Sbjct: 65 PLDREAIAKYILYSHAVS 82
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 88.8 bits (221), Expect = 4e-22
Identities = 52/212 (24%), Positives = 80/212 (37%), Gaps = 35/212 (16%)
Query: 12 NDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVL--EQDGDMFSV 69
+ P F T + L I E+ P+GS + + A D D+ ++ + E+ F+V
Sbjct: 2 VNRLPFF----TNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAV 57
Query: 70 NNITVCEFQLSVDLAAADNF--QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIK 127
T L L + +SE+ D +VNI+
Sbjct: 58 EPDTG-VVWLRQPL----DRETKSEFTVEFS-------------VSDHQGV-ITRKVNIQ 98
Query: 128 VLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE--NPHLTYKILSGNDDDV 185
V DVNDN P F ++ Y I EN + + ATD D + Y +
Sbjct: 99 VGDVNDNAPTFHNQPYSVRIPEN--TPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PF 154
Query: 186 FAVD-DTGILTIQGPL-AKGKTVYNLLVQVSD 215
FA+D GI+T+ L + Y L V +D
Sbjct: 155 FAIDSARGIVTVIQELDYEVTQAYQLTVNATD 186
Score = 57.2 bits (139), Expect = 2e-10
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 30/139 (21%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS---SIALYV 59
+ I + DVND P F Y + I E P+G+ + A D D LY
Sbjct: 94 KVNIQVGDVNDNAPTFH------NQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS 147
Query: 60 LEQDGDMFSVNNITVCEFQLSVDLAAAD-NFQSEYNATIKENSPGDTKVVLVSAEDASTP 118
+ F++++ + +L D Y T+ A D
Sbjct: 148 FQPPSPFFAIDSAR-GIVTVIQEL---DYEVTQAYQLTVN-------------ATDQDKT 190
Query: 119 C---SHFRVNIKVLDVNDN 134
+ + I + D+ D
Sbjct: 191 RPLSTLANLAIIITDMQDM 209
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 90.4 bits (225), Expect = 1e-21
Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 43/230 (18%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIAL---YV 59
+II + DVND PP F ++ P + + A D D+ + V
Sbjct: 96 RVIILVKDVNDEPPYF----INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIV 151
Query: 60 LEQDGDMFSVNNITVCEFQLSVDLAAADNF--QSEYNATIKENSPGDTKVVLVSAEDAST 117
++ G F V+ + V D F EY + V AED +
Sbjct: 152 RDRTGGRFEVDERSG-----VVRTRGTDLFQLDMEYV-------------LYVKAEDQNG 193
Query: 118 P------CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENP 171
S + ++ P+F +Y I EN +++++A +
Sbjct: 194 KVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPEN--QKKDSDIISIKAKSFA-DR 249
Query: 172 HLTYKIL-SGNDDDVFAVD-DTGILTIQGPL----AKGKTVYNLLVQVSD 215
+ Y + G F + +GI+ + L + VY+L+V ++
Sbjct: 250 EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 299
Score = 87.0 bits (216), Expect = 2e-20
Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQ 62
I P+F P +Y EI E Q S + A Y L+
Sbjct: 204 PEERLSIVGGKRAPQFYMP------SYEAEIPENQKKDSDIISIKAKSFADREIRYTLKA 257
Query: 63 DGDM---FSV----NNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDA 115
G F++ + + + +D Y+ + A +
Sbjct: 258 QGQGAGTFNIGPTSGIVKLAK---ELDFEDLRQ-PHVYSLIVT-------------ATED 300
Query: 116 STP-CSHFRVNIKVLDVNDNRPEFKSKTYRT-SIQENIIITPSPTLLTLEATDSD--ENP 171
S + + I+V DVNDN P+F+ Y+ ++ E+ I ++L ++A DSD N
Sbjct: 301 SGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDED--IPLGTSILRVKAMDSDSGSNA 358
Query: 172 HLTYKILSGNDDDVFAVDDTGILTIQGPL--AKGKTVYNLLVQVSD 215
+ Y + + FAVD GI+ L Y +V D
Sbjct: 359 EIEYLVSDDH----FAVDSNGIIVNNKQLDADNNNAYYEFIVTAKD 400
Score = 84.3 bits (209), Expect = 2e-19
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 96 TIKENSPGDTKVVLVSAEDASTPC--SHFRVNIKVLDVNDNRPEF--KSKTYRTSIQENI 151
+ D V++ + + + RV I V DVND P F + + +Q N
Sbjct: 67 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 126
Query: 152 IITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVD-DTGILTIQGPLA-KGKTVYNL 209
P+ + TL+A D D + ++ Y I+ F VD +G++ +G + Y L
Sbjct: 127 --PPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVL 184
Query: 210 LVQVSD 215
V+ D
Sbjct: 185 YVKAED 190
Score = 41.1 bits (97), Expect = 1e-04
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 34/136 (25%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSI-AL--YV 59
L I + DVND P+FE P ++E+ P+G+ + + A+D DS A Y+
Sbjct: 309 DLTIRVTDVNDNAPKFELP-----DYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYL 363
Query: 60 LEQDGDMFSVNN---ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDAS 116
+ D F+V++ I +D ADN + Y +V+A+D
Sbjct: 364 VSD--DHFAVDSNGIIVN---NKQLD---ADNNNAYYE-------------FIVTAKDKG 402
Query: 117 TP--CSHFRVNIKVLD 130
P V + +
Sbjct: 403 EPPKSGVATVRVYTKN 418
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 77.7 bits (192), Expect = 6e-18
Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 51/212 (24%)
Query: 27 PNYLLEIEEEQPIGSLLGKFTALDKDSSIAL--YVL--EQDGDMFSVNNITVCEFQLSVD 82
N IEE +L D DS Y+L E G +F +++ + +
Sbjct: 5 WNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSG-------N 57
Query: 83 LAAADNF----QSEYNATIKENSPGDTKVVLVSAEDASTPC---SHFRVNIKVLDVNDNR 135
+ A +++Y A D T +KV D+NDN
Sbjct: 58 IHATKTLDREERAQYTLM-------------AQAVDRDTNRPLEPPSEFIVKVQDINDNP 104
Query: 136 PEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSGNDDDVFAVD- 189
PEF + Y ++ E +++ + A+D+D+ + L Y IL G F+V+
Sbjct: 105 PEFLHEIYHANVPER--SNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEA 160
Query: 190 DTGILTIQGPLAKG------KTVYNLLVQVSD 215
TGI+ A K Y++++Q D
Sbjct: 161 QTGIIR----TALPNMDREAKEEYHVVIQAKD 188
Score = 62.3 bits (152), Expect = 3e-12
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 43/151 (28%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIAL----- 57
I+ + D+ND PPEF Y + E +G+ + + TA D D
Sbjct: 92 EFIVKVQDINDNPPEFL------HEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKL 145
Query: 58 -YVLEQDGDMFSVNN----ITVCEFQLSVDLAAADNF--QSEYNATIKENSPGDTKVVLV 110
Y + + FSV I + + + EY+ V++
Sbjct: 146 VYSILEGQPYFSVEAQTGIIRTALPNM--------DREAKEEYH-------------VVI 184
Query: 111 SAEDASTPC----SHFRVNIKVLDVNDNRPE 137
A+D +V I + D + +
Sbjct: 185 QAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 76.9 bits (190), Expect = 9e-18
Identities = 46/205 (22%), Positives = 75/205 (36%), Gaps = 37/205 (18%)
Query: 27 PNYLLEIEEEQPIGSLLGKFTALDKDSSIA--LYVLEQDG--DMFSVNNITVCEFQLSVD 82
N +EE D+D Y+L DG D+F +N T + Q +
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENT-GDIQATKR 62
Query: 83 LAAAD-NFQSEYNATIKENSPGDTKVVLVSAEDASTPC---SHFRVNIKVLDVNDNRPEF 138
L D + Y A + T IK+ D+NDN P F
Sbjct: 63 L---DREEKPVYILR-------------AQAVNRRTGRPVEPESEFIIKIHDINDNEPIF 106
Query: 139 KSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKILSGNDDDVFAVD-DTG 192
Y ++ E ++ + ATD+D+ + + Y IL G F+V+ +TG
Sbjct: 107 TKDVYTATVPEM--ADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETG 162
Query: 193 -ILTIQGPL-AKGKTVYNLLVQVSD 215
I T + + + Y +++Q D
Sbjct: 163 IIKTALLNMDRENREQYQVVIQAKD 187
Score = 51.1 bits (123), Expect = 3e-08
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIA------ 56
II I D+ND P F + Y + E +G+ + + TA D D
Sbjct: 91 EFIIKIHDINDNEPIFT------KDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 57 LYVLEQDGDMFSVNNIT 73
+Y + Q FSV + T
Sbjct: 145 VYSILQGQPYFSVESET 161
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 76.3 bits (188), Expect = 3e-17
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 110 VSAEDASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDS 167
A D + + + I V+D+NDNRPEF + + S+ E P ++T+ A D+
Sbjct: 78 AHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEG--SKPGTYVMTVTAIDA 135
Query: 168 DE----NPHLTYKILSGND----DDVFAVD-DTG-ILTIQGPL-AKGKTVYNLLVQVSD 215
D+ N L Y+ILS ++F ++ +TG I+T+ L + Y L++Q +D
Sbjct: 136 DDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 44.7 bits (106), Expect = 4e-06
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD------SSIA 56
++I++ID+ND PEF + + E G+ + TA+D D +
Sbjct: 93 DIVINVIDMNDNRPEFL------HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 57 LYVLEQD-----GDMFSVNNIT 73
+L Q +MF++NN T
Sbjct: 147 YRILSQAPSTPSPNMFTINNET 168
Score = 41.6 bits (98), Expect = 6e-05
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDDD----VFAVD-DTGILTIQG 198
++ EN + P L SD +N L Y + D +F ++ +G L++
Sbjct: 8 NLPEN---SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 199 PLAK-GKTVYNLLVQVSD 215
PL + ++L D
Sbjct: 65 PLDRELIARFHLRAHAVD 82
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 74.7 bits (184), Expect = 7e-17
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 124 VNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE-----NPHLTYKIL 178
IKV D+NDN P F K + S+ E ++ + A D+D+ + +TY+I+
Sbjct: 90 FIIKVSDINDNAPIFVQKIFNGSVPEM--SRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 179 SGNDDDVFAVD-DTGILTIQGPLAK-GKTVYNLLVQVSD 215
GN + F VD I T + L + ++ Y ++V+ D
Sbjct: 148 KGN--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
Score = 51.2 bits (123), Expect = 3e-08
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIAL----- 57
II + D+ND P F + + + E +G+ + K TA D D
Sbjct: 89 KFIIKVSDINDNAPIFV------QKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATV 142
Query: 58 -YVLEQDGDMFSVNNITV 74
Y + + + F+V++ V
Sbjct: 143 TYQIIKGNEYFTVDDSGV 160
Score = 44.2 bits (105), Expect = 6e-06
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 144 RTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVD-DTGILTIQGPLAK 202
R I+E I +P P + + T S N + Y I + + +F V G + L +
Sbjct: 6 RMHIREEID-SPLPHHV-GKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDR 63
Query: 203 -GKTVYNLLVQVSD 215
K Y L + D
Sbjct: 64 EKKAEYELTAHIID 77
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 74.0 bits (182), Expect = 2e-16
Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 44/209 (21%)
Query: 31 LEIEEEQPIGSLLGKFTALDKDSSIALYVL------EQDGDMFSVNNITVCEFQLSVDLA 84
+ + QP +GK D+ + L + F +N T +SV
Sbjct: 10 IPENQRQPFPRDVGKVVDSDRPEGSK-FRLTGKGVDQDPKGTFRINENT---GSVSVT-R 64
Query: 85 AADN-FQSEYNATIKENSPGDTKVVLVSAEDASTPC--SHFRVNIKVLDVNDNRPEFKSK 141
D + Y + V DAS + + V+D NDNRP F+
Sbjct: 65 TLDRETIATYQ-------------LYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREG 111
Query: 142 TYRTSIQENIIITPSPTLLTLEATDSDE----NPHLTYKILSGNDD----DVFAVD-DTG 192
Y + E T++ + A D+D+ N L Y I D ++F +D + G
Sbjct: 112 PYIGHVMEG--SPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKG 169
Query: 193 ILTIQGPLA------KGKTVYNLLVQVSD 215
+ A Y L+++ D
Sbjct: 170 DIVTVVSPALLDRETLENPKYELIIEAQD 198
Score = 44.3 bits (105), Expect = 7e-06
Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 40/147 (27%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD------SSIA 56
L + +ID ND P F E Y+ + E P G+ + + TA D D + +
Sbjct: 93 PLEVIVIDQNDNRPIFR------EGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLR 146
Query: 57 LYVLEQDGD-----MFSVNN----ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKV 107
+ +Q D MF ++ I +D + +Y
Sbjct: 147 YNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLE--NPKYE------------- 191
Query: 108 VLVSAEDASTP----CSHFRVNIKVLD 130
+++ A+D + I + D
Sbjct: 192 LIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 40.8 bits (96), Expect = 9e-05
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDENPH--LTYKILSGNDDDVFAVD-DTGILTIQGPLAK 202
I EN + + +D E LT K + + F ++ +TG +++ L +
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 203 -GKTVYNLLVQVSD 215
Y L V+ +D
Sbjct: 69 ETIATYQLYVETTD 82
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 72.4 bits (178), Expect = 6e-16
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 110 VSAEDASTP--CSHFRVNIKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDS 167
A ++ + I V D NDNRPEF + + S+ E P +++ + ATD+
Sbjct: 78 SHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG--AVPGTSVMKVSATDA 135
Query: 168 DE-----NPHLTYKILSGNDD----DVFAVD-DTG-ILTIQGPLAK-GKTVYNLLVQVSD 215
D+ N + Y I+S + + ++F V+ DTG I + L + Y L+VQ +D
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 195
Score = 44.6 bits (106), Expect = 6e-06
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 18/83 (21%)
Query: 3 TLIISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD-------SSI 55
++I++ D ND PEF + + + E G+ + K +A D D ++I
Sbjct: 93 EIVITVTDQNDNRPEFT------QEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Query: 56 ALYVLEQD-----GDMFSVNNIT 73
A ++ QD +MF+VN T
Sbjct: 147 AYTIVSQDPELPHKNMFTVNRDT 169
Score = 43.9 bits (104), Expect = 1e-05
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 143 YRTSIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDDD----VFAVD-DTGILT 195
S EN L S+ + + Y I D VF ++ +TG L
Sbjct: 5 AAISCPEN---EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 196 IQGPLAK-GKTVYNLLVQVSD 215
+ PL + Y L
Sbjct: 62 VTQPLDREAIAKYILYSHAVS 82
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 66.9 bits (163), Expect = 1e-13
Identities = 25/220 (11%), Positives = 56/220 (25%), Gaps = 35/220 (15%)
Query: 25 DEPNYLLEIEEEQPIGSLLGKFTALDKDS------------SIALYVLEQDGDMFSVNNI 72
Y ++ +Q G+ L AL + + +
Sbjct: 4 SRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQED 63
Query: 73 TVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKV-VLVSAEDASTPCSHFR--VNIKVL 129
T L + + + + + + + V +S + +
Sbjct: 64 TG---LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFS 120
Query: 130 DVNDNRPE----------FKSKTYRTSIQENIIITPSPTLLTLEATDSD--ENPHLTYKI 177
N + P F I+EN P + Y++
Sbjct: 121 FFNTSFPACSSLKPRELCFPETRPSFRIREN--RPPGTFHQFRLLPVQFLCPQISVAYRL 178
Query: 178 LSGNDDDVFAVD-DTGILTIQGPLAK-GKTVYNLLVQVSD 215
L G + F D+ ++ + L + + Y L+ +
Sbjct: 179 LEG-EGLPFRSAPDSLEVSTRWALDREQREKYELVAVCTV 217
Score = 61.1 bits (148), Expect = 1e-11
Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 25/147 (17%)
Query: 2 GTLIISIIDVNDIPPEFEPPWTRD----EPNYLLEIEEEQPIGSLLGKFTALDKDS---- 53
G + N P R+ E I E +P G+ +
Sbjct: 113 GCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQI 172
Query: 54 SIALYVLEQDGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAE 113
S+A +LE +G F + ++S A + +Y +V V
Sbjct: 173 SVAYRLLEGEGLPFRSAPDS---LEVSTRWALDREQREKYE------------LVAVCTV 217
Query: 114 DASTP--CSHFRVNIKVLDVNDNRPEF 138
A + V D +D+ PEF
Sbjct: 218 HAGAREEVVMVPFPVTVYDEDDSAPEF 244
Score = 39.9 bits (93), Expect = 3e-04
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 138 FKSKTYRTSIQENIIITPSPTLLTLEATDSD----ENPHLTYKI-----LSGNDDDVFAV 188
F Y + + LL + A + L + ++++ +
Sbjct: 3 FSRDAYWEKLYVD--QAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRI 60
Query: 189 D-DTGILTIQGPL 200
DTG+L +Q L
Sbjct: 61 QEDTGLLYLQRSL 73
Score = 27.6 bits (61), Expect = 2.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 3 TLIISIIDVNDIPPEFE 19
+++ D +D PEFE
Sbjct: 229 PFPVTVYDEDDSAPEFE 245
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 63.6 bits (156), Expect = 1e-13
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTL-LTLEATDSDE--NPHLTYKILSGND 182
NDNRP FK I EN P T + L ATD+D N + Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPEN---APVGTSVIQLHATDADIGSNAEIRYIFGAQVA 58
Query: 183 DDV---FAVD-DTGILTIQGPL-AKGKTVYNLLVQVSD 215
FA++ TG++T+Q L + ++ + V SD
Sbjct: 59 PATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD 96
Score = 41.3 bits (98), Expect = 2e-05
Identities = 33/139 (23%), Positives = 45/139 (32%), Gaps = 38/139 (27%)
Query: 6 ISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDS--------SIAL 57
S ND P F E + I E P+G+ + + A D D
Sbjct: 2 SSGSSGNDNRPVF------KEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGA 55
Query: 58 YVLEQDGDMFSVNN----ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAE 113
V +F++NN ITV S+D + V V A
Sbjct: 56 QVAPATKRLFALNNTTGLITVQR---SLDREETAIHK-----------------VTVLAS 95
Query: 114 DASTPCSHFRVNIKVLDVN 132
D S+ + V I V DVN
Sbjct: 96 DGSSTPARATVTINVTDVN 114
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 62.9 bits (154), Expect = 3e-13
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSPTL-LTLEATDSDE--NPHLTYKILSGND 182
NDN P F+ Y + EN + T L L A D D N + Y + +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAEN---SAPGTPILQLRAADLDVGVNGQIEYVFGAATE 58
Query: 183 D--DVFAVD-DTGILTIQGPL 200
+ +D +G L++ +
Sbjct: 59 SVRRLLRLDETSGWLSVLHRI 79
Score = 42.5 bits (101), Expect = 9e-06
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 39/144 (27%)
Query: 6 ISIIDVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSI---ALYVLEQ 62
S ND P F ++ Y ++ E G+ + + A D D + YV
Sbjct: 2 SSGSSGNDNSPRF------EKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGA 55
Query: 63 DGD----MFSVN----NITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAED 114
+ + ++ ++V +D + + V A D
Sbjct: 56 ATESVRRLLRLDETSGWLSVLH---RIDREEVNQLR-----------------FTVMARD 95
Query: 115 ASTPC--SHFRVNIKVLDVNDNRP 136
P V + + D NDN P
Sbjct: 96 RGQPPKTDKATVVLNIKDENDNVP 119
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 46.6 bits (111), Expect = 2e-07
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDE-NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-AK 202
+ E P + +D D + + Y + VF +D TG + L +
Sbjct: 9 FVLEEYT-GTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 203 GKTVYNLLVQVSD 215
++ Y L Q D
Sbjct: 68 ERSQYTLRAQALD 80
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 44.7 bits (106), Expect = 1e-06
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDE-NPHLTYKILSGNDDDVFAVD-DTGILTIQGPL-AK 202
+ E P P L+ TD D + + Y + +F ++ TG + L +
Sbjct: 8 FVLEEFS-GPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 203 GKTVYNLLVQVSD 215
K Y L Q D
Sbjct: 67 EKAEYTLTAQAVD 79
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 42.8 bits (101), Expect = 5e-06
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 136 PEFKSKTYRTSIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDDD----VFAVD 189
P S EN P L S+ + + Y I D VF ++
Sbjct: 2 PLGSWVIPPISCPEN---EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 58
Query: 190 -DTGILTIQGPL-AKGKTVYNLLVQVSD 215
+TG L + PL + Y L
Sbjct: 59 RETGWLKVTEPLDRERIATYTLFSHAVS 86
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 42.7 bits (101), Expect = 6e-06
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDENPH--LTYKILSGNDDDVFAVD-DTGILTIQGPL-A 201
I EN + + +D E LT K + + F ++ +TG +++ L
Sbjct: 9 LIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDR 68
Query: 202 KGKTVYNLLVQVSD 215
+ Y L V+ +D
Sbjct: 69 ETIATYQLYVETTD 82
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 42.4 bits (100), Expect = 8e-06
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDENPH--LTYKILSGNDDDVFAVD-DTGILTIQGPLAK 202
I EN ++ + ++ E L+ K + + +F ++ +G +++ PL +
Sbjct: 8 LIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDR 67
Query: 203 GKT-VYNLLVQVSD 215
Y L V+V+D
Sbjct: 68 EAIANYELEVEVTD 81
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 42.0 bits (99), Expect = 8e-06
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 146 SIQENIIITPSPTLLTLEATDSDENPH--LTYKILSGNDDDVFAVD-DTGILTIQGPLAK 202
SI EN I + + +D L K + +F ++ ++G +++ L +
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDR 67
Query: 203 GKT-VYNLLVQVSD 215
Y L V+ +D
Sbjct: 68 EAIPSYQLQVETTD 81
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 40.7 bits (96), Expect = 4e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSDE--NPHLTYKILSGNDDD----VFAVD-DTGILTIQG 198
++ EN + P L S N L Y + D +F ++ +G L++
Sbjct: 10 NLPEN---SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 66
Query: 199 PL-AKGKTVYNLLVQVSD 215
PL + ++L D
Sbjct: 67 PLDRELIARFHLRAHAVD 84
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 110 VSAEDASTP--CSHFRVNIKVLDVNDNRPEF 138
A D + + + I V+D+NDNRPEF
Sbjct: 80 AHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 3 TLIISIIDVNDIPPEF 18
++I++ID+ND PEF
Sbjct: 95 DIVINVIDMNDNRPEF 110
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 110 VSAEDASTP--CSHFRVNIKVLDVNDNRPEF 138
A DA + IKVLD+NDN P F
Sbjct: 90 GYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 27.7 bits (62), Expect = 1.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 3 TLIISIIDVNDIPPEFE 19
L I ++D+ND P F
Sbjct: 105 ELRIKVLDINDNEPVFT 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 44/193 (22%)
Query: 12 NDIPPEFEPPWTRDE-----PNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDM 66
DI FE + + + I ++ I ++ A+ + + L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQ-- 75
Query: 67 FSVNNITVCEFQLSVDLAAADNFQSEYNATIKE-NSPGDTKVVLVSAEDASTPCSHFRVN 125
+ V +F V+ N++ + E P + + D + N
Sbjct: 76 ---EEM-VQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-----YNDN 123
Query: 126 IKVLDVNDNRPEFKSKTYRTSIQENIIITPSP------------TLLTLEATDSDENPHL 173
N +R + R ++ E + P+ T + L+ S
Sbjct: 124 QVFAKYNVSRLQ-PYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVCLS------ 173
Query: 174 TYKILSGNDDDVF 186
YK+ D +F
Sbjct: 174 -YKVQCKMDFKIF 185
Score = 35.2 bits (80), Expect = 0.015
Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 63/230 (27%)
Query: 10 DVNDIPPE-FEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD---SSIALYVLEQDGD 65
+ IP W + + + L K++ ++K S+I++ + +
Sbjct: 384 SAH-IPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-- 434
Query: 66 MFSVNNITVCEFQLSVDLAAA--DNFQSEYNATIKENSPGDTKVVLVSAEDASTP----- 118
++ ++ A + YN I + D D P
Sbjct: 435 -----------LKVKLENEYALHRSIVDHYN--IPKTFDSD---------DLIPPYLDQY 472
Query: 119 -CSHFRVNIKVLDVNDNRPEF----------KSKTYRTSIQENIIITPSPTLLTLEA--- 164
SH ++K ++ + F + K S N + TL L+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 165 --TDSDENPH-LTYKI---LSGNDDDVFAVDDTGILTIQGPLAKGKTVYN 208
D+D L I L ++++ T +L I +A+ + ++
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAEDEAIFE 581
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 34.2 bits (79), Expect = 0.009
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 122 FRVNIKVLDVNDNRPEFKSKTYRTSI 147
+ I++ DVND+ PEF S
Sbjct: 99 IQGEIQLQDVNDHAPEFMEDESGPSS 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.021
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 51/145 (35%)
Query: 32 EIEEEQPI-------G-SLLGKFTALDKDSSIA--------LYVLEQ------------- 62
+++ + I G SL G++ AL +S+A + V+
Sbjct: 1746 DLKSKGLIPADATFAGHSL-GEYAAL---ASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 63 ----DGDMFSVNNITVCEFQLSVDLAAADNFQSEYNATIKE-------NSPGDTKVV--- 108
+ M ++N V S A N V
Sbjct: 1802 LGRSNYGMIAINPGRVA---ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 109 LVSAEDASTPCSHFRV-NIKVLDVN 132
L + + + + ++ I ++++
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 32.3 bits (73), Expect = 0.11
Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 61/205 (29%)
Query: 16 PEFEPPWTRDEPNYLLEIEEEQP-IGSL-LGKFTALDKDSSIALYVLEQD-GDMFS-VNN 71
P P +YLL I P IG + L + + +L G++ S +
Sbjct: 222 PSNTPD-----KDYLLSIPISCPLIGVIQLAHYV-------VTAKLLGFTPGELRSYLKG 269
Query: 72 ITVCEFQL--SVDLAAADNFQSEYNATIK-------------ENSPGDT---KVVLVSA- 112
T L +V +A D+++S + + K E P + ++ S
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 113 --EDASTP------CSHFRVNIKVLDVNDNRPEFKSKTYRTSI-----QENIIIT-PSPT 158
E +P + +V V N + P K + I +N++++ P +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK----QVEISLVNGAKNLVVSGPPQS 385
Query: 159 LLTLEATDSDENPHL-TYKILSGND 182
L L N L K SG D
Sbjct: 386 LYGL-------NLTLRKAKAPSGLD 403
Score = 28.9 bits (64), Expect = 1.6
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 26 EPNYLLEI-----EEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSVNNITVCEFQLS 80
+L+EI E +Q + + G ALD +++ + + I + E Q S
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAA--GDLRALDTVTNVL--------NFIKLQKIDIIELQKS 1885
Query: 81 VDL 83
+ L
Sbjct: 1886 LSL 1888
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 27.2 bits (61), Expect = 1.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 118 PCSHFRVNIKVLDVNDN 134
P F V ++V D+NDN
Sbjct: 87 PLQVFHVEVEVRDINDN 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 35 EEQPIGSLLGKFTALDKDSSIALYV---LE 61
E+Q + L DS+ AL + +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 26.1 bits (57), Expect = 9.6
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 88 NFQSEYNATIKENSPGDTKVVLVSAEDAS 116
F + + P +T+ L +ED S
Sbjct: 408 KFCERMTDMVDKLKPKNTRFCLRLSEDGS 436
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,169,949
Number of extensions: 182085
Number of successful extensions: 514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 115
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.0 bits)