RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9046
(215 letters)
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 41.5 bits (96), Expect = 8e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVD-- 189
NDN P F KTY + EN I L + + N+ F +
Sbjct: 2 NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTD 61
Query: 190 ----DTGILTIQGPLAKGKTVYNLLVQVSD 215
+ T +G + + Y L + V +
Sbjct: 62 PESNQGILTTAKGLDFELRKQYVLQITVEN 91
Score = 31.9 bits (71), Expect = 0.016
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
Y A + EN G +V +S D P + + + VN+ F T S Q
Sbjct: 10 PKTYTALVPENEIG-FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGF-FNITTDPESNQG 67
Query: 150 NIIITPSPT-------LLTLEATDSDEN 170
+ +L + +++
Sbjct: 68 ILTTAKGLDFELRKQYVLQITVENAEPF 95
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 40.7 bits (94), Expect = 2e-05
Identities = 12/135 (8%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 10 DVNDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSV 69
++ F E Y + ++ G L + + + + F V
Sbjct: 5 EIALCKTGFP------EDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKV 58
Query: 70 NNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVL 129
+ Y + K ++ + + + VN+
Sbjct: 59 DEDGT-----------------VYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSRE 101
Query: 130 DVNDNRPEFKSKTYR 144
P +
Sbjct: 102 PTLTEEPMKEPHEIE 116
Score = 38.0 bits (87), Expect = 2e-04
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 130 DVNDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVD 189
++ + F Y + ++ + LL ++ ++ + + Y+ ++ F VD
Sbjct: 5 EIALCKTGFPEDVYSAVLPKD--VHEGQPLLNVKFSNCNRKRKVQYES---SEPADFKVD 59
Query: 190 DTGILTIQGPLAKGKTVYNLLVQVSD 215
+ G + L+ D
Sbjct: 60 EDGTVYAVRSFPLTAEQAKFLIYAQD 85
Score = 28.8 bits (63), Expect = 0.30
Identities = 9/118 (7%), Positives = 27/118 (22%), Gaps = 3/118 (2%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
+ Y+A + ++ ++ V + + + E + S
Sbjct: 15 EDVYSAVLPKDVHEGQPLLNVKFSNCN--RKRKVQYESSEPADFKVDEDGTVYAVRSFPL 72
Query: 150 NIIITPSPTLLTLEATDSDENPHLTYKILSGNDDD-VFAVDDTGILTIQGPLAKGKTV 206
+ T + ++ + + + LAK
Sbjct: 73 TAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGA 130
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 37.8 bits (86), Expect = 2e-04
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHL----TYKILSGND----D 183
NDNRPEF + + S+ E P ++T+ A D+D+ L Y+I+S
Sbjct: 1 NDNRPEFLHQVWNGSVPEG--SKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSP 58
Query: 184 DVFAVDDTG--ILTIQGPLAKGKT-VYNLLVQVSD 215
++F +++ I+T+ L + K Y L++Q +D
Sbjct: 59 NMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 93
Score = 34.3 bits (77), Expect = 0.003
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
+N ++ E S T V+ V+A DA P + + + + +
Sbjct: 9 HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETG 68
Query: 150 NIIITPSPTL--------LTLEATDSDENP 171
+II + L ++ATD + NP
Sbjct: 69 DIITVAAGLDREKVQQYTLIIQATDMEGNP 98
Score = 30.5 bits (67), Expect = 0.052
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 15/124 (12%)
Query: 12 NDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSVNN 71
ND PEF + + E G+ + TA+D D AL + S
Sbjct: 1 NDNRPEFL------HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG-MLRYRIVSQAP 53
Query: 72 ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTP-----CSHFRVNI 126
T +++ + A + +++ A D + I
Sbjct: 54 STPSPNMFTIN---NETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVI 110
Query: 127 KVLD 130
V D
Sbjct: 111 TVTD 114
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 35.0 bits (79), Expect = 0.002
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 133 DNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDVFAVDDTG 192
+ P F R + E++ L + D + L+Y I + + D G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
Query: 193 ILTIQGPL-----AKGKTVYNLLVQVSD 215
I+T G L Y +++ V+D
Sbjct: 61 IVTGNGNLDRESEYVKNNTYTVIMLVTD 88
Score = 32.7 bits (73), Expect = 0.010
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 4/100 (4%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQ- 148
+ + E+ K++ + A+D D K T
Sbjct: 8 PAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGN 67
Query: 149 ---ENIIITPSPTLLTLEATDSDENPHLTYKILSGNDDDV 185
E+ + + + + TD + L + DV
Sbjct: 68 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107
Score = 30.0 bits (66), Expect = 0.082
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 24/125 (19%)
Query: 13 DIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKD----SSIALYVLEQDGDMFS 68
+ P F P +++ E+ G + A D D ++ ++ +
Sbjct: 1 NEAPFFVPA------VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLT 54
Query: 69 VNNITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTPC--SHFRVNI 126
VN V + +SEY +T V++ D + +
Sbjct: 55 VNKDNGI-----VTGNGNLDRESEYVKN-------NTYTVIMLVTDDGVSVGTGTGTLIL 102
Query: 127 KVLDV 131
VLDV
Sbjct: 103 HVLDV 107
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 34.7 bits (78), Expect = 0.002
Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 21/125 (16%)
Query: 12 NDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSVNN 71
ND P P + + ++ P + T D D
Sbjct: 1 NDNGPVPSP--------RVFTMCDQNPEPQV---LTISDAD----------IPPNTYPYK 39
Query: 72 ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDV 131
+++ A D+ + + + + V DA VN V
Sbjct: 40 VSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 99
Query: 132 NDNRP 136
Sbjct: 100 EGKAI 104
Score = 27.7 bits (60), Expect = 0.49
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPH 172
NDN P + + Q + +D+D P+
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQVLT-------ISDADIPPN 34
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 33.9 bits (76), Expect = 0.003
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEAT-----DSDENPHLTYKILSGNDDD-- 184
NDNRPEF + + S+ E P +++ + AT + N + Y I+S + +
Sbjct: 1 NDNRPEFTQEVFEGSVAEG--AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPH 58
Query: 185 --VFAVDDTG---ILTIQGPLAKGKTVYNLLVQVSD 215
+F V+ + G + Y L+VQ +D
Sbjct: 59 KNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAAD 94
Score = 28.9 bits (63), Expect = 0.19
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
Q + ++ E + T V+ VSA DA + + I V+ + + +
Sbjct: 9 QEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT 68
Query: 150 NIIITP---------SPTLLTLEATDSDENPH 172
+I L ++A D
Sbjct: 69 GVISVLTSGLDRESYPTYTLVVQAADLQGEGL 100
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 32.3 bits (72), Expect = 0.012
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 132 NDNRPEFKSKTYRTSIQENIIITPSPTLLTLEATDSDENPH-----LTYKILSGNDDDVF 186
NDNRP+F +R S++E + P ++ + ATD D+N L+Y IL + ++
Sbjct: 2 NDNRPKFTQDVFRGSVREG--VQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPI 59
Query: 187 AVDDTGILTIQGPLAKG-------KTVYNLLVQVSD 215
T G Y L VQ +D
Sbjct: 60 PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATD 95
Score = 30.8 bits (68), Expect = 0.047
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 90 QSEYNATIKENSPGDTKVVLVSAEDASTPCSHFRVNIKVLDVNDNRPEFKSKTYRTSIQE 149
Q + +++E T+V+ VSA D + + + E + + +
Sbjct: 10 QDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRET 69
Query: 150 NIIITPSPTL---------LTLEATDSDENPH 172
+I L LT++ATD +
Sbjct: 70 GVISLIGTGLDREKFPEYTLTVQATDLEGAGL 101
Score = 28.9 bits (63), Expect = 0.18
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 15/123 (12%)
Query: 12 NDIPPEFEPPWTRDEPNYLLEIEEEQPIGSLLGKFTALDKDSSIALYVLEQDGDMFSVNN 71
ND P+F + + + E G+ + +A + ++ + S +
Sbjct: 2 NDNRPKFT------QDVFRGSVREGVQPGTQVMAVSA-----TDEDDNIDSLNGVLSYSI 50
Query: 72 ITVCEFQLSVDLAAADNFQSEYNATIKENSPGDTKV--VLVSAEDASTP--CSHFRVNIK 127
+ + +L + + + V A D + I+
Sbjct: 51 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ 110
Query: 128 VLD 130
+ D
Sbjct: 111 ITD 113
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 30.5 bits (68), Expect = 0.049
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSDE--NPHLTYKILSGNDDD----VFAVD-DTGILTI-Q 197
+ EN P L S++ + Y I D+ VF ++ +TG + + +
Sbjct: 8 KVSEN---ERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTR 64
Query: 198 GPLAKGKTVYNLLVQVSD 215
+ Y L
Sbjct: 65 PLDREEYDKYVLSSHAVS 82
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 29.7 bits (66), Expect = 0.094
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 9/60 (15%)
Query: 136 PEFKSKTYRTSIQENIIITPSPTLLTLEATDSDE--NPHLTYKILSGNDD----DVFAVD 189
P S EN P L S++ + Y I D VF ++
Sbjct: 1 PLGSWVIPPISCPEN---EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 57
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 28.7 bits (63), Expect = 0.21
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 146 SIQENIIITPSPTLLTLEATDSD--ENPHLTYKILSGNDD----DVFAVD-DTGILTI-Q 197
++ EN + P L S +N L Y + D +F ++ +G L++ +
Sbjct: 10 NLPEN---SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 66
Query: 198 GPLAKGKTVYNLLVQVSD 215
+ ++L D
Sbjct: 67 PLDRELIARFHLRAHAVD 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.377
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 760,781
Number of extensions: 33568
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 22
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)