BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9047
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5DRD6|PCDBD_PANTR Protocadherin beta-13 OS=Pan troglodytes GN=PCDHB13 PE=3 SV=1
Length = 798
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V++S+ +PVG + K + A D D GVNG + Y + + ++ +GK
Sbjct: 250 VQISEDSPVGFLVVK-VSATDVDTGVNGEISYSLFQASEE-------IGKT--------- 292
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F IN P G++ + + LDFEK Q Y V I A
Sbjct: 293 -FKIN-PLTGEIELKKQLDFEKLQSYEVNIEA 322
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D+G N V Y ++P QD ++ S SIN G + RSL
Sbjct: 475 ATDRDSGTNAQVTYSLLPPQDPHLPLT--------------SLVSINA-DNGHLFALRSL 519
Query: 96 DFEKTQRYLVTIVAS 110
D+E Q + + AS
Sbjct: 520 DYEALQGFEFRVGAS 534
>sp|Q9Y5F0|PCDBD_HUMAN Protocadherin beta-13 OS=Homo sapiens GN=PCDHB13 PE=2 SV=1
Length = 798
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V++S+ +PVG + K + A D D GVNG + Y + + ++ +GK
Sbjct: 250 VQISEDSPVGFLVVK-VSATDVDTGVNGEISYSLFQASEE-------IGKT--------- 292
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F IN P G++ + + LDFEK Q Y V I A
Sbjct: 293 -FKIN-PLTGEIELKKQLDFEKLQSYEVNIEA 322
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 32 KNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTV 91
+++ A D D+G N V Y ++P QD ++ S SIN G +
Sbjct: 471 RSVSATDRDSGTNAQVTYSLLPPQDPHLPLT--------------SLVSINA-DNGHLFA 515
Query: 92 NRSLDFEKTQRYLVTIVAS 110
RSLD+E Q + + AS
Sbjct: 516 LRSLDYEALQGFQFRVGAS 534
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIV---PSQDKNIGTADGVGK-DRV 70
P+ ++VS+ TPVG TI N A DAD G NG ++Y ++ P +++ A + + D +
Sbjct: 1436 PIDLQVSEATPVG-TIIHNFTATDADTGTNGDLQYRLIRYFPQLNESQEQAMSLFRMDSL 1494
Query: 71 TVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
T G +++ LDFE Q YL+ + A
Sbjct: 1495 T---------------GALSLQAPLDFEAVQEYLLIVQA 1518
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 19/84 (22%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VG+++ + + A D DA NGLVEY I Q D F I+ P
Sbjct: 248 VGTSVLQ-VYASDTDADENGLVEYAINRRQS-----------------DKEQMFRID-PR 288
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVA 109
G + +N++LDFE + + + +VA
Sbjct: 289 TGAIYINKALDFETKELHELVVVA 312
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGY 76
+V V + P G+ + + +RAVD D G N + Y IV +D DG+
Sbjct: 1210 VVSVREEQPPGTEVVR-VRAVDRDHGQNASITYSIVKGRDS----------------DGH 1252
Query: 77 SYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
FSI+ P G + LD E+ Y + + AS
Sbjct: 1253 GLFSID-PTSGVIRTRVVLDHEERSIYRLGVAAS 1285
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 20/93 (21%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V V++ PVG I K + A D D GVN +V Y I G G +T + S
Sbjct: 565 VSVAENEPVGRCILK-VSASDPDCGVNAMVNYTI------------GEGFKHLTEFEVRS 611
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G++ + LDFE+ Y ++A+
Sbjct: 612 A-------SGEICIAGELDFERRSSYEFPVLAT 637
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
PVGS++F+ A D D G G + Y I P+ + F ++
Sbjct: 2823 PVGSSVFR-AHASDLDKGPFGQLNYSIGPAPSDE---------------SSWKMFRVD-S 2865
Query: 85 HQGQVTVNRSLDFEKTQRYLVTIVAS 110
G VT D+E+ QRY + ++AS
Sbjct: 2866 ESGLVTSAFVFDYEQRQRYDMELLAS 2891
>sp|Q9H251|CAD23_HUMAN Cadherin-23 OS=Homo sapiens GN=CDH23 PE=1 SV=2
Length = 3354
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 25/97 (25%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEY-FIVPSQDKNIGTADGVGKDRVTVV 73
P VR+ + TPVG+ IF + A D D G G V Y F PSQ
Sbjct: 136 PYSVRIPENTPVGTPIFI-VNATDPDLGAGGSVLYSFQPPSQ------------------ 176
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F+I+ +G VTV R LD+E TQ Y +T+ A+
Sbjct: 177 ----FFAID-SARGIVTVIRELDYETTQAYQLTVNAT 208
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
PVG TI + A DAD+G L+EY ++ DG S F+IN P
Sbjct: 2416 PVG-TIILTVTATDADSGNFALIEY---------------------SLGDGESKFAIN-P 2452
Query: 85 HQGQVTVNRSLDFEKTQRYLVTIVA 109
G + V SLD EK Y++T +A
Sbjct: 2453 TTGDIYVLSSLDREKKDHYILTALA 2477
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFI---VPSQDKNIGTADGV 65
+ +P + V + P G +I++ + A+D D G+NGLV Y + +P D I ++ GV
Sbjct: 891 QNLPFVAEVLEGIPAGVSIYQ-VVAIDLDEGLNGLVSYRMPVGMPRMDFLINSSSGV 946
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGY 76
I+ + + P+ S +++ + A D D G+NG V Y + K G D +
Sbjct: 2619 ILHIREEIPLRSNVYE-VYATDKDEGLNGAVRYSFL----KTAGNRD------------W 2661
Query: 77 SYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F I+ P G + + LD E Y + +VAS
Sbjct: 2662 EFFIID-PISGLIQTAQRLDRESQAVYSLILVAS 2694
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V + + PVG + ++A D DAG NG V + + NI A + VT D
Sbjct: 1426 VSIPEDCPVGQRV-ATVKAWDPDAGSNGQVVFSLA---SGNIAGAFEI----VTTNDSI- 1476
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G+V V R LD E+ Y++ +VAS
Sbjct: 1477 ---------GEVFVARPLDREELDHYILQVVAS 1500
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVP-SQDKNI 59
++ V + +P G+ + AVDAD G N +V YFI +++KN
Sbjct: 2734 LLTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGNEEKNF 2777
>sp|Q96QU1|PCD15_HUMAN Protocadherin-15 OS=Homo sapiens GN=PCDH15 PE=1 SV=2
Length = 1955
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 20 VSDLTPVGSTIFKNLR----AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
V++LTPVG+TIF A D D G NG +EY I + D D D
Sbjct: 156 VNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPD------DPTSNDT------ 203
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I L G + + + L++E RY V I A+
Sbjct: 204 ---FEIPLMLTGNIVLRKRLNYEDKTRYFVIIQAN 235
>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster GN=ft
PE=1 SV=3
Length = 5147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 28 STIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87
+T+ ++AVD D G NG ++Y + ++D+++G +D + FS+N P G
Sbjct: 2182 NTVVIAVKAVDNDEGRNGYIDYLMKEARDEDMGQSDPLP------------FSLN-PTDG 2228
Query: 88 QVTVNRSLDFEKTQRYLVTIVA 109
Q+ V +LD E YL+ I A
Sbjct: 2229 QLRVVDALDRELRSSYLLNITA 2250
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 29 TIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88
TI + A D D G NG V + + PS ++ D +T GQ
Sbjct: 616 TIVALMTATDHDQGTNGSVTFALAPSVERLYPLQ--FALDALT---------------GQ 658
Query: 89 VTVNRSLDFEKTQRYLVTIVA 109
+T R LD EK +Y ++++A
Sbjct: 659 LTTRRPLDREKMSQYEISVIA 679
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 20/74 (27%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A DAD G N + Y +V ++ FS+N P G +T+ L
Sbjct: 1946 ARDADLGQNAQLSYGVVSDWANDV-------------------FSLN-PQTGMLTLTARL 1985
Query: 96 DFEKTQRYLVTIVA 109
D+E+ Q Y++ + A
Sbjct: 1986 DYEEVQHYILIVQA 1999
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V V + +P G+ + + RA DAD GVN V + I ++ D +
Sbjct: 1391 VSVLETSPTGTELMR-FRASDADQGVNSQVVFSISAGNRRDTFHIDSI------------ 1437
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G + +++ LD+E Y + I AS
Sbjct: 1438 --------TGSLYLHKPLDYEDITSYTLNITAS 1462
>sp|P58365|CAD23_RAT Cadherin-23 OS=Rattus norvegicus GN=Cdh23 PE=2 SV=1
Length = 3317
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 25/97 (25%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEY-FIVPSQDKNIGTADGVGKDRVTVV 73
P VR+ + TPVG+ IF + A D D G G V Y F PSQ
Sbjct: 136 PYSVRIPENTPVGTPIFI-VNATDPDLGAGGSVLYSFQPPSQ------------------ 176
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F+I+ +G VTV R LD+E TQ Y +T+ A+
Sbjct: 177 ----FFAID-SARGIVTVIRELDYEVTQAYQLTVNAT 208
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 23/84 (27%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VG+ I + + A DAD+G L+EY ++VDG F+IN P+
Sbjct: 2415 VGTVILR-VTATDADSGNFALIEY---------------------SLVDGEGKFAIN-PN 2451
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVA 109
G + V SLD EK Y++T +A
Sbjct: 2452 TGDIYVLSSLDREKKDHYILTALA 2475
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
+ +P + V + TP G ++++ + A+D D G+NGLV Y + VG R+
Sbjct: 889 QNLPFVAEVLEGTPAGVSVYQ-VVAIDLDEGLNGLVSYRM------------QVGMPRMD 935
Query: 72 VVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN G VT LD E+ Y + +VAS
Sbjct: 936 -------FVIN-STSGVVTTTAELDRERIAEYQLRVVAS 966
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGY 76
I+ + + P+ S +++ + A D D G+NG V Y + K+ G D +
Sbjct: 2617 ILHIKEEIPLRSNVYE-VYATDKDEGLNGAVRYSFL----KSTGNRD------------W 2659
Query: 77 SYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
YF+I+ P G + + LD EK Y + +VAS
Sbjct: 2660 EYFTID-PISGLIQTAQRLDREKQAVYSLILVAS 2692
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
+P+ + +S+ +PV S+ ++ A DAD+G N L+ + I ++R +
Sbjct: 1852 LPMNITISENSPV-SSFVAHVLASDADSGCNALLTFNITAGN-----------RERAFFI 1899
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+ + G VTVNR LD E+ Y +T+
Sbjct: 1900 NATT---------GIVTVNRPLDRERIPEYRLTV 1924
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVP-SQDKNI 59
++ V + +P G+ + AVDAD G N +V YFI ++DKN
Sbjct: 2732 LLTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGNEDKNF 2775
>sp|Q99PJ1|PCD15_MOUSE Protocadherin-15 OS=Mus musculus GN=Pcdh15 PE=1 SV=2
Length = 1943
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 20 VSDLTPVGSTIFKNLR----AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
V++LTPVG+TIF A D D G NG +EY I D D
Sbjct: 161 VNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVI------QYNPEDPTSNDT------ 208
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I L G V + + L++E RY V I A+
Sbjct: 209 ---FEIPLMLTGNVVLRKRLNYEDKTRYYVIIQAN 240
>sp|Q5RJH3|CAD12_MOUSE Cadherin-12 OS=Mus musculus GN=Cdh12 PE=2 SV=1
Length = 794
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
++V + +PVGS I + +RAVD D G N +EY IVP N+ D VT D
Sbjct: 276 LKVPESSPVGSAIGR-IRAVDPDFGKNAEIEYNIVPGDGGNLF-------DIVTDEDT-- 325
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+G + + + LDFE + Y + AS
Sbjct: 326 -------QEGIIKLKKPLDFETKKAYTFKVEAS 351
>sp|P55289|CAD12_HUMAN Cadherin-12 OS=Homo sapiens GN=CDH12 PE=2 SV=2
Length = 794
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
++V + +P+GS I + +RAVD D G N +EY IVP N+ D VT D
Sbjct: 276 LKVPESSPIGSAIGR-IRAVDPDFGQNAEIEYNIVPGDGGNLF-------DIVTDEDT-- 325
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+G + + + LDFE + Y + AS
Sbjct: 326 -------QEGVIKLKKPLDFETKKAYTFKVEAS 351
>sp|Q6B457|CDHR1_XENLA Cadherin-related family member 1 OS=Xenopus laevis GN=cdhr1 PE=2
SV=1
Length = 867
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P IV V + TP GS+IFK + AVD D G G + Y I
Sbjct: 142 PYIVTVPEDTPPGSSIFK-IEAVDKDTGSGGSITYIIQEMHG------------------ 182
Query: 75 GYSYFSINLPHQG--QVTVNRSLDFEKTQRYLVTIVA 109
S F+I+ H G ++ SLDFEK++ + V+++A
Sbjct: 183 --SKFTIDR-HSGVLRIKAGVSLDFEKSRTHFVSVLA 216
>sp|Q6B3P0|CDHR1_DANRE Cadherin-related family member 1 OS=Danio rerio GN=cdhr1 PE=2 SV=1
Length = 857
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 23/100 (23%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
+ +P IV V + T GS+I+K ++AVD D G G V YF+ S+
Sbjct: 140 QNMPSIVDVPENTTSGSSIYK-VQAVDRDTGSGGSVTYFLQSSEQS-------------- 184
Query: 72 VVDGYSYFSINLPHQG--QVTVNRSLDFEKTQRYLVTIVA 109
F+I+ H G ++ SLD+EK++ + +T+VA
Sbjct: 185 -----PKFAIDH-HSGVLRIKPGESLDYEKSRTHFITVVA 218
>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila
melanogaster GN=stan PE=1 SV=4
Length = 3579
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P V + PVG+T+ + A D+D GVN + Y + +G+ D
Sbjct: 901 PYSASVFEDAPVGTTVLV-VSATDSDVGVNAQITYSLNEESINGLGSPDP---------- 949
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
FSIN P G + N LD E T YL+T+ A
Sbjct: 950 ----FSIN-PQTGAIVTNAPLDRETTSGYLLTVTA 979
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKN 58
+ + V + +PVGS + + + A D D GVN +V Y I+ D N
Sbjct: 1118 ITLYVPENSPVGSVVGE-IHAHDPDEGVNAVVHYSIIGGDDSN 1159
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VGST+ LRA D D G N +EY I + + G+ +D+ + F I+
Sbjct: 479 VGSTVI-TLRATDQDIGKNAEIEYGI-----EAVTDGAGLAQDQEMPI-----FRID-SR 526
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVAS 110
G ++ SLD E + Y + + A+
Sbjct: 527 SGVISTRSSLDRETSDSYHLLVTAA 551
>sp|Q8UVJ7|CDHR1_CHICK Cadherin-related family member 1 OS=Gallus gallus GN=CDHR1 PE=2
SV=1
Length = 865
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 24/97 (24%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P IV+V + +P GS+IFK + AVD D G G + YF+ +NI A+ DR
Sbjct: 141 PYIVQVPENSPSGSSIFK-IEAVDRDTGSGGSITYFL-----QNI-HANKFTIDR----- 188
Query: 75 GYSYFSINLPHQGQVTVNR--SLDFEKTQRYLVTIVA 109
H G + + +LD+EK++ + V +VA
Sbjct: 189 ----------HSGVLRIKSGVTLDYEKSRTHFVVVVA 215
>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=PCDHGB1 PE=2 SV=1
Length = 927
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 26/111 (23%)
Query: 5 VKVSNRKRTIPV----IVRVS--DLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKN 58
++V++ PV + RVS + P G+++ + + A D D G+N + Y + S
Sbjct: 227 IRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLR-VMATDQDEGINAEITYAFLNSP--- 282
Query: 59 IGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
I T S F++N P+ G +T N +LDFE+T RY++++ A
Sbjct: 283 IST---------------SLFNLN-PNTGDITTNGTLDFEETSRYVLSVEA 317
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 2 TCTVKVSNRKRTIPV------IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQ 55
+ T+ +S+ PV +V VS+ P G++I + A D D G NG V Y I+ S
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASI-AQVSASDPDLGPNGRVSYSILASD 491
Query: 56 DKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
+ + SY S++ P G V R+ D E+ + + +T+ A
Sbjct: 492 --------------LEPRELLSYVSVS-PQSGVVFAQRAFDHEQLRAFELTLQA 530
>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1 SV=2
Length = 4981
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V +S+ PV S FK ++A D D+G NG + Y I D N G A G+ D
Sbjct: 1003 VTLSESEPVNSRFFK-VQASDKDSGANGEIAYTIT---DGNNGDAFGIFPD--------- 1049
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
GQ+ + LD E RY++ +VAS
Sbjct: 1050 ---------GQLYIKSELDRELQDRYVLLVVAS 1073
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 26/98 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIV-PSQDK-NIGTADGVGKDRVTV 72
P + + + TP+ + +FK +A D D+G N +EY ++ PS +K +IGT D
Sbjct: 2054 PKLTYIPENTPIDTVVFK-AQATDPDSGPNSYIEYTLLNPSGNKFSIGTID--------- 2103
Query: 73 VDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G+V + LD E+ Y +T+VA+
Sbjct: 2104 --------------GEVHLTGELDREEVSNYSLTVVAT 2127
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 22/90 (24%)
Query: 20 VSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYF 79
V + P G+T+ +L A DAD+G N ++ Y V S D ++ D
Sbjct: 3205 VMENAPSGTTVI-HLNATDADSGANAVIAY-TVQSSDSDLFVID---------------- 3246
Query: 80 SINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
P+ G +T LDFE Q Y +T+ A
Sbjct: 3247 ----PNMGVITTQGFLDFETKQSYHLTVKA 3272
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 84 PHQGQVTVNRSLDFEKTQRYLVTIVA 109
P GQV++++ LDFEK Q+Y+V I A
Sbjct: 2618 PLTGQVSISQPLDFEKIQKYVVWIEA 2643
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 20/82 (24%)
Query: 29 TIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88
++ + + A D D +NGL+ Y I+ ++ I F+IN G
Sbjct: 3108 SVVRTVSARDRDTAMNGLISYNIISGNEEGI-------------------FAIN-SSTGV 3147
Query: 89 VTVNRSLDFEKTQRYLVTIVAS 110
VT+ ++LD+E + ++ +TI A+
Sbjct: 3148 VTLAKALDYEMSSKHEMTISAT 3169
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 20/74 (27%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D G NGL+ Y I+ + +R +D +S GQVT+ L
Sbjct: 1234 ASDVDEGSNGLIHYSILKGNE-----------ERQFAIDSFS---------GQVTLVGKL 1273
Query: 96 DFEKTQRYLVTIVA 109
D+E T Y + I A
Sbjct: 1274 DYEATSAYSLLIQA 1287
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 23/85 (27%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VGS++ + + A DAD G N + Y + QD+ GT F ++ P
Sbjct: 265 VGSSVLQ-VAAADADEGTNADIRYRL---QDE--GTP----------------FQMD-PE 301
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVAS 110
G +TV LDFE ++Y +T+ A+
Sbjct: 302 TGLITVREPLDFEARRQYSLTVQAT 326
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 22/88 (25%)
Query: 22 DLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSI 81
D TP ++ + A D D+GVNG + Y + +D DG F +
Sbjct: 1853 DTTP--GSLVAAILATDDDSGVNGEISYVV--EED-----------------DGDGVFFL 1891
Query: 82 NLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
NL G + R+LD+E Q Y++T+ A
Sbjct: 1892 NL-VTGVFNLTRALDYETQQYYILTVRA 1918
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 43/123 (34%)
Query: 2 TCTVKVSNRKRTIPVIVRVSDLTPV--GSTIF----KNLR---------AVDADAGVNGL 46
TCT+ + I+ +D TP ST+F +N+R A D+D+GVN
Sbjct: 1298 TCTLSID--------ILDENDNTPSFPKSTLFVDVLENMRIGELVSSVTATDSDSGVNAD 1349
Query: 47 VEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVT 106
+ Y I S N GT FSI+ P+ G + + + LDFE Y +
Sbjct: 1350 LHYTITGS--NNHGT-----------------FSIS-PNTGSIFLAKKLDFETQSLYKLN 1389
Query: 107 IVA 109
I A
Sbjct: 1390 ITA 1392
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2
Length = 4588
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 18/86 (20%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
P GS + + +RA DAD+G NG V Y + SQ V V++ F+IN+
Sbjct: 2823 PGGSRVIQ-IRASDADSGTNGQVMYSLDQSQ-------------SVEVIES---FAINM- 2864
Query: 85 HQGQVTVNRSLDFEKTQRYLVTIVAS 110
G +T + LD EK Y + +VAS
Sbjct: 2865 ETGWITTLKELDHEKRDNYQIKVVAS 2890
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 22/92 (23%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V+V + P G+ I L A D D G +G V Y ++ D G D VD S
Sbjct: 934 VKVREDLPEGTVIMW-LEAHDPDLGQSGQVRYSLL---DHGEGNFD---------VDKLS 980
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
G V + + LDFEK Q Y +T+ A
Sbjct: 981 ---------GAVRIVQQLDFEKKQVYNLTVRA 1003
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 23/98 (23%)
Query: 11 KRTIPVIVRVSDLTPVGST-IFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDR 69
+ T+P ++V + PVGS+ IF N + D D G NG + Y + G +D
Sbjct: 717 RSTLPTGIQVKENQPVGSSVIFMN--STDLDTGFNGKLVYAV-----------SGGNEDS 763
Query: 70 VTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
++D + G + + LD E T +Y + I
Sbjct: 764 CFMIDMET---------GMLKILSPLDRETTDKYTLNI 792
>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes GN=PCDHGB1 PE=3 SV=1
Length = 927
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 5 VKVSNRKRTIPVI------VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKN 58
++V++ PV V + + P G+++ + + A D D G+N + Y + S
Sbjct: 227 IRVTDANDNAPVFSQEVYRVSLQENVPWGTSVLR-VMATDQDEGINAEITYAFLNSP--- 282
Query: 59 IGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
I T S F++N P+ G +T N +LDFE+T RY++++ A
Sbjct: 283 IST---------------SLFNLN-PNTGDITTNGTLDFEETSRYVLSVEA 317
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 2 TCTVKVSNRKRTIPV------IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQ 55
+ T+ +S+ PV +V VS+ P G++I + + A D D G NG V Y I+ S
Sbjct: 433 SITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQ-VSASDPDLGPNGRVSYSILASD 491
Query: 56 DKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
+ + SY S++ P G V R+ D E+ + + +T+ A
Sbjct: 492 --------------LEPRELLSYVSVS-PQSGVVFAQRAFDHEQLRAFELTLQA 530
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 22/93 (23%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V +S+ PV S FK ++A D D+G NG + Y I + N G A G+ D
Sbjct: 1003 VTLSESEPVNSRFFK-VQASDKDSGANGEIAYTIA---EGNTGDAFGIFPD--------- 1049
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
GQ+ + LD E RY++ +VAS
Sbjct: 1050 ---------GQLYIKSELDRELQDRYVLMVVAS 1073
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 22/85 (25%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
P G+T+ +L A DAD+G N ++ Y V S D ++ D P
Sbjct: 3208 PSGTTVI-HLNATDADSGTNAVIAY-TVQSSDSDLFVID--------------------P 3245
Query: 85 HQGQVTVNRSLDFEKTQRYLVTIVA 109
+ G +T LDFE Q Y +T+ A
Sbjct: 3246 NTGVITTQGFLDFETKQSYHLTVKA 3270
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 26/98 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIV-PSQDK-NIGTADGVGKDRVTV 72
P + + + TP+ + +FK +A D D+G N +EY ++ P +K +IGT DG
Sbjct: 2054 PKLTYIPENTPIDTVVFK-AQATDPDSGPNSYIEYTLLNPLGNKFSIGTIDG-------- 2104
Query: 73 VDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+V + LD E+ Y +T+VA+
Sbjct: 2105 ---------------EVRLTGELDREEVSNYTLTVVAT 2127
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 20/81 (24%)
Query: 29 TIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88
+I + + A D DA +NGL++Y I ++ I F+IN G
Sbjct: 3106 SIVRTVSARDRDAAMNGLIKYSISSGNEEGI-------------------FAIN-SSTGI 3145
Query: 89 VTVNRSLDFEKTQRYLVTIVA 109
+T+ ++LD+E Q++ +TI A
Sbjct: 3146 LTLAKALDYELCQKHEMTISA 3166
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 87 GQVTVNRSLDFEKTQRYLVTIVA 109
GQV++++ LDFEK Q+Y+V I A
Sbjct: 2619 GQVSISQPLDFEKIQKYVVWIEA 2641
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 22/83 (26%)
Query: 27 GSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86
GS I + L A+DAD G N LV Y I+ D + F I+ P
Sbjct: 1756 GSKIMQ-LTAMDADEGANALVTYTIISGADDS--------------------FRID-PES 1793
Query: 87 GQVTVNRSLDFEKTQRYLVTIVA 109
G + R LD E+ +Y + + A
Sbjct: 1794 GDLIATRRLDRERRSKYSLLVRA 1816
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 28/94 (29%)
Query: 25 PVGSTIFKNLR--------AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGY 76
P S I +NL A+D D+G NG ++Y IV +N
Sbjct: 2673 PFISEILENLSPRKILTVSAMDKDSGPNGQLDYEIVNGNMEN------------------ 2714
Query: 77 SYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
FSIN G++ R LD EK Y++TI +S
Sbjct: 2715 -SFSINH-ATGEIRSVRPLDREKVSHYVLTIKSS 2746
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 23/84 (27%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VGS++ + + A DAD G N + Y + QD+ GT F ++ P
Sbjct: 265 VGSSVLQ-VAAADADEGTNADIRYRL---QDE--GTP----------------FQMD-PE 301
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVA 109
G +TV LDFE ++Y +T+ A
Sbjct: 302 TGLITVREPLDFEARRQYSLTVQA 325
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 21/93 (22%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V +++ T G+ I + + A D D G NG V Y IV N T D VT
Sbjct: 2161 VEINENTLTGTDIIQ-VFAADGDEGTNGQVRYGIV-----NGNTNQEFRIDSVT------ 2208
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G +TV + LD EKT Y +T+ A+
Sbjct: 2209 ---------GAITVAKPLDREKTPTYHLTVQAT 2232
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 20/74 (27%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D G NGL+ Y I+ + +R +D S GQVT+ L
Sbjct: 1234 ASDVDEGNNGLIHYSIIKGNE-----------ERQFAIDSTS---------GQVTLIGKL 1273
Query: 96 DFEKTQRYLVTIVA 109
D+E T Y + I A
Sbjct: 1274 DYEATPAYSLVIQA 1287
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 20/74 (27%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D+GVNG + Y + N DG+ F +N P G + R L
Sbjct: 1865 ATDDDSGVNGEITYIV------NEDDEDGI-------------FFLN-PITGVFNLTRLL 1904
Query: 96 DFEKTQRYLVTIVA 109
D+E Q Y++T+ A
Sbjct: 1905 DYEVQQYYILTVRA 1918
>sp|P79995|CAD10_CHICK Cadherin-10 OS=Gallus gallus GN=CDH10 PE=2 SV=1
Length = 789
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
+ +R+ + +PVG+ I +++A DAD G N VEY I+ DG G D +V
Sbjct: 274 IHLRIPESSPVGTPI-GSIKATDADTGKNAEVEYRII----------DGDGTDMFDIV-- 320
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LD+E + Y + + A
Sbjct: 321 ----TQRDTQEGIITVRKPLDYETRRLYTLKVEAE 351
>sp|Q9Y6N8|CAD10_HUMAN Cadherin-10 OS=Homo sapiens GN=CDH10 PE=1 SV=2
Length = 788
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
+ +RV + +PVG+ I +++A DAD G N VEY I+ DG G D +V
Sbjct: 274 IHLRVLESSPVGTAI-GSVKATDADTGKNAEVEYRII----------DGDGTDMFDIV-- 320
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LD+E + Y + + A
Sbjct: 321 ----TEKDTQEGIITVKKPLDYESRRLYTLKVEAE 351
>sp|Q8WN91|CDHR1_BOVIN Cadherin-related family member 1 OS=Bos taurus GN=CDHR1 PE=2 SV=1
Length = 867
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 42/106 (39%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P +V+V + TP GS+I + +RAVD D G G V YF+ KN
Sbjct: 139 PYVVQVPEDTPSGSSIAR-VRAVDRDTGSAGSVTYFL-----KN---------------- 176
Query: 75 GYSYFSINLPHQGQVTVNRS-----------LDFEKTQRYLVTIVA 109
PH + +V+R LDFEK + + VT+VA
Sbjct: 177 ---------PHPTEFSVDRHSGVLRLRAGAILDFEKARAHFVTVVA 213
>sp|Q9VW71|FAT2_DROME Fat-like cadherin-related tumor suppressor homolog OS=Drosophila
melanogaster GN=kug PE=2 SV=2
Length = 4705
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VGS I +++A D D+ VNGLV Y NI D +G+ FSI+ P
Sbjct: 3409 VGSKIL-DVKATDEDSDVNGLVTY--------NIERGDNIGQ-----------FSID-PK 3447
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVA 109
G ++V+R LD E Y + I A
Sbjct: 3448 NGTISVSRPLDRETISHYTLEIQA 3471
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 20/77 (25%)
Query: 34 LRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93
L+ DAD GVNG+VEY IV KN D G + + R
Sbjct: 1844 LQVKDADVGVNGMVEYHIVDDLAKNFFKIDST--------------------TGAIELLR 1883
Query: 94 SLDFEKTQRYLVTIVAS 110
LD+E Y + S
Sbjct: 1884 QLDYETNAGYTFDVTVS 1900
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 5 VKVSNRKRTIPVI------VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKN 58
+KV +R P+ V + + TP +I K + A DAD G+NG + Y ++ +
Sbjct: 168 IKVLDRNDLSPLFYPTQYTVVIPEDTPKYQSILK-VTADDADLGINGEIYYSLLMDSE-- 224
Query: 59 IGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
YF+I+ P G++T+ + L + + + +T+VA
Sbjct: 225 -------------------YFAIH-PTTGEITLLQQLQYAENSHFELTVVA 255
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 21/91 (23%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
+V + +GS + + +RA+D D+G N ++Y I+ N+G S
Sbjct: 1617 KVPESAAIGSKLAE-VRAIDRDSGHNAEIQYSIITG---NVG----------------SV 1656
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F I+ P G +T+ +L+ K Q Y++ + A
Sbjct: 1657 FEID-PTFGIITLAGNLNINKIQEYMLQVKA 1686
>sp|Q99PF4|CAD23_MOUSE Cadherin-23 OS=Mus musculus GN=Cdh23 PE=1 SV=2
Length = 3354
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 23/84 (27%)
Query: 26 VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85
VG+ I + + A DAD+G L+EY ++VDG F+IN P+
Sbjct: 2417 VGTVILR-VTATDADSGNFALIEY---------------------SLVDGEGKFAIN-PN 2453
Query: 86 QGQVTVNRSLDFEKTQRYLVTIVA 109
G ++V SLD EK Y++T +A
Sbjct: 2454 TGDISVLSSLDREKKDHYILTALA 2477
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P VR+ + TPVG+ IF + A D D G G V Y P
Sbjct: 136 PYSVRIPENTPVGTPIFI-VNATDPDLGAGGSVLYSFQPPS------------------- 175
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F+I+ +G VTV + LD+E TQ Y +T+ A+
Sbjct: 176 --PFFAID-SARGIVTVIQELDYEVTQAYQLTVNAT 208
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
R +P + + + TP G ++++ + A+D D G+NGLV Y + VG R+
Sbjct: 891 RNLPFVAEILEGTPAGVSVYQ-VVAIDLDEGLNGLVSYRM------------QVGMPRMD 937
Query: 72 VVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN G VT LD E+ Y + +VAS
Sbjct: 938 -------FVIN-STSGVVTTTAELDRERIAEYQLRVVAS 968
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGY 76
I+ + + P+ S +++ + A D D G+NG V Y + K G D +
Sbjct: 2619 ILHIKEEIPLRSNVYE-VYATDNDEGLNGAVRYSFL----KTTGNRD------------W 2661
Query: 77 SYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
YF+I+ P G + + LD EK Y + +VAS
Sbjct: 2662 EYFTID-PISGLIQTAQRLDREKQAVYSLILVAS 2694
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 21/94 (22%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
+P+ V +S+ +PV S+ ++ A DAD+G N L+ + I ++R +
Sbjct: 1854 LPMNVTISENSPV-SSFVAHVLASDADSGCNALLTFNITAGN-----------RERAFFI 1901
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+ + G VTVNR LD E+ Y +T+
Sbjct: 1902 NATT---------GIVTVNRPLDRERIPEYRLTV 1926
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVP-SQDKNI 59
++ V + +P G+ + AVDAD G N +V YFI +DKN
Sbjct: 2734 LLTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGDEDKNF 2777
>sp|P55280|CADH6_RAT Cadherin-6 OS=Rattus norvegicus GN=Cdh6 PE=2 SV=1
Length = 789
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
+ + +P G+ I + ++A DAD G N +EY I DG G D V+
Sbjct: 276 KTPESSPPGTPIGR-IKASDADVGENAEIEYSIT----------DGEGHDMFDVI----- 319
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LDFEK + Y + + AS
Sbjct: 320 -TDQETQEGIITVKKLLDFEKKRVYTLKVEAS 350
>sp|Q80TF3|PCD19_MOUSE Protocadherin-19 OS=Mus musculus GN=Pcdh19 PE=2 SV=3
Length = 1145
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D G+NG V Y IVPSQ +++ ++Y SIN P+ G + RS
Sbjct: 477 ARDPDMGLNGSVSYQIVPSQVRDMPV--------------FTYVSIN-PNSGDIYALRSF 521
Query: 96 DFEKTQRYLVTIVA 109
+ E+T+ + ++A
Sbjct: 522 NHEQTKAFEFKVLA 535
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 4 TVKVSNRKRTIPVI------VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDK 57
++KV++ PV V V + +P + + + L A D D G NG V Y
Sbjct: 225 SIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIR-LNASDPDEGTNGQVVYSFY----- 278
Query: 58 NIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
G DR + F I+ PH G VTV +LD+E+ Y + + A
Sbjct: 279 ------GYVNDRTREL-----FQID-PHSGLVTVTGALDYEEGHVYELDVQA 318
>sp|Q8TAB3|PCD19_HUMAN Protocadherin-19 OS=Homo sapiens GN=PCDH19 PE=1 SV=3
Length = 1148
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D G+NG V Y IVPSQ +++ ++Y SIN P+ G + RS
Sbjct: 477 ARDPDLGLNGSVSYQIVPSQVRDMPV--------------FTYVSIN-PNSGDIYALRSF 521
Query: 96 DFEKTQRYLVTIVA 109
+ E+T+ + ++A
Sbjct: 522 NHEQTKAFEFKVLA 535
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 4 TVKVSNRKRTIPVI------VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDK 57
++KV++ PV V V + +P + + + L A D D G NG V Y
Sbjct: 225 SIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIR-LNASDPDEGTNGQVVYSFY----- 278
Query: 58 NIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
G DR + F I+ PH G VTV +LD+E+ Y + + A
Sbjct: 279 ------GYVNDRTREL-----FQID-PHSGLVTVTGALDYEEGHVYELDVQA 318
>sp|Q8VHP6|CDHR1_MOUSE Cadherin-related family member 1 OS=Mus musculus GN=Cdhr1 PE=1 SV=1
Length = 859
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 24/97 (24%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P I+RV + P GS+IFK ++A D D G G V Y + +N+ +
Sbjct: 139 PYIIRVPENIPAGSSIFK-VQAEDKDTGSGGSVTYSL-----QNLHS------------- 179
Query: 75 GYSYFSINLPHQG--QVTVNRSLDFEKTQRYLVTIVA 109
S FS++ H G ++ +LD+EK++ + +T++A
Sbjct: 180 --SKFSMDR-HSGVLRLQAGATLDYEKSRAHYITVIA 213
>sp|P55285|CADH6_HUMAN Cadherin-6 OS=Homo sapiens GN=CDH6 PE=1 SV=1
Length = 790
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
+ + +P G+ I + ++A DAD G N +EY I DG G D V+
Sbjct: 276 KTPESSPPGTPIGR-IKASDADVGENAEIEYSIT----------DGEGLDMFDVI----- 319
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LDFEK + Y + + AS
Sbjct: 320 -TDQETQEGIITVKKLLDFEKKKVYTLKVEAS 350
>sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes GN=PCDHGC4 PE=3 SV=1
Length = 938
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 33 NLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVN 92
+L A D D+G+N L+ Y ++ +++++ + S+ S+N P G V
Sbjct: 476 SLAASDPDSGLNALISYSLLEPRNRDVSAS--------------SFISLN-PQTGAVHAT 520
Query: 93 RSLDFEKTQ 101
RS D+E+TQ
Sbjct: 521 RSFDYEQTQ 529
>sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens GN=PCDHGC4 PE=2 SV=1
Length = 938
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 33 NLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVN 92
+L A D D+G+N L+ Y ++ +++++ + S+ S+N P G V
Sbjct: 476 SLAASDPDSGLNALISYSLLEPRNRDVSAS--------------SFISLN-PQTGAVHAT 520
Query: 93 RSLDFEKTQ 101
RS D+E+TQ
Sbjct: 521 RSFDYEQTQ 529
>sp|O14917|PCD17_HUMAN Protocadherin-17 OS=Homo sapiens GN=PCDH17 PE=2 SV=2
Length = 1159
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D G NG V Y I+PS +IG V Y+Y S+N P G + RS
Sbjct: 496 AQDPDLGQNGTVSYSILPS---HIGD-----------VSIYTYVSVN-PTNGAIYALRSF 540
Query: 96 DFEKTQRYLVTIVA 109
+FE+T+ + ++A
Sbjct: 541 NFEQTKAFEFKVLA 554
>sp|P97326|CADH6_MOUSE Cadherin-6 OS=Mus musculus GN=Cdh6 PE=1 SV=2
Length = 790
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
+ + +P G+ I + ++A DAD G N +EY I DG G + V+
Sbjct: 276 KTPESSPPGTPIGR-IKASDADVGENAEIEYSIT----------DGEGHEMFDVI----- 319
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LDFEK + Y + + AS
Sbjct: 320 -TDQETQEGIITVKKLLDFEKKKVYTLKVEAS 350
>sp|Q8BM92|CADH7_MOUSE Cadherin-7 OS=Mus musculus GN=Cdh7 PE=2 SV=1
Length = 785
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 20 VSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYF 79
V + PV S + + ++A DAD GVN +EY IV DG DG F
Sbjct: 271 VPESLPVASVVAR-IKAADADIGVNAEMEYKIV----------DG---------DGLGIF 310
Query: 80 SINLP---HQGQVTVNRSLDFEKTQRYLVTIVAS 110
I+ +G +T+ + LDFE Y + I A+
Sbjct: 311 KISADKDTQEGIITIQKELDFEAKTSYTLRIEAA 344
>sp|P70408|CAD10_MOUSE Cadherin-10 OS=Mus musculus GN=Cdh10 PE=2 SV=3
Length = 788
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 17/95 (17%)
Query: 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
+ +RV + +PVG+ + +++A DAD G N V+Y I+ DG G D ++
Sbjct: 274 IHLRVLESSPVGTAV-GSVKATDADTGKNAEVDYRII----------DGDGTDMFDII-- 320
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LD+E + Y + + A
Sbjct: 321 ----TEKDTQEGIITVKKPLDYENRRLYTLKVEAE 351
>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2
Length = 4589
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
++ P V V + PVG+ I K ++A DAD+G NG V + T
Sbjct: 727 KSFPSDVAVKEDLPVGANILK-IKAYDADSGFNGKVLF---------------------T 764
Query: 72 VVDGY--SYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+ DG S F+I++ GQ+ V +D E T YL+ I
Sbjct: 765 ISDGNTDSCFNIDM-ETGQLKVLMPMDREHTDLYLLNI 801
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F+IN P+ G +T ++LD+E+T Y + I A+
Sbjct: 1714 FTIN-PYSGVITTQKALDYERTSSYQLIIQAT 1744
>sp|Q9ULB5|CADH7_HUMAN Cadherin-7 OS=Homo sapiens GN=CDH7 PE=2 SV=2
Length = 785
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 20 VSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYF 79
V + PV S + + ++A DAD G N +EY IV DG+G +++V
Sbjct: 271 VPESLPVASVVAR-IKAADADIGANAEMEYKIV--------DGDGLGIFKISV------- 314
Query: 80 SINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+G +T+ + LDFE Y + I A+
Sbjct: 315 -DKETQEGIITIQKELDFEAKTSYTLRIEAA 344
>sp|Q96JP9|CDHR1_HUMAN Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2
Length = 859
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 25/97 (25%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P + V + P GS IFK + AVD D G G V YF+ +N+
Sbjct: 139 PYVALVPEDIPAGSIIFK-VHAVDRDTGSGGSVTYFL-----QNL--------------- 177
Query: 75 GYSYFSINLPHQG--QVTVNRSLDFEKTQRYLVTIVA 109
+S F+++ H G ++ +LD+E+++ + +T+VA
Sbjct: 178 -HSPFAVDR-HSGVLRLQAGATLDYERSRTHYITVVA 212
>sp|Q9Y5G1|PCDGF_HUMAN Protocadherin gamma-B3 OS=Homo sapiens GN=PCDHGB3 PE=2 SV=3
Length = 929
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 2 TCTVKVSNRKRTIPVI------VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQ 55
T T+ + + +PV V V++ P G++I ++RA D D G NGLV Y+IV S
Sbjct: 437 TITLHILDVNDNVPVFHQASYTVHVAENNPPGASI-AHVRASDPDLGPNGLVSYYIVASD 495
Query: 56 DKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
+ + SY S++ G V R+ D E+ + + +T+ A
Sbjct: 496 --------------LEPRELSSYVSVSA-RSGVVFAQRAFDHEQLRAFELTLQA 534
>sp|Q5DWV2|CADH7_RAT Cadherin-7 OS=Rattus norvegicus GN=Cdh7 PE=2 SV=1
Length = 785
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 23/89 (25%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
PV S + + ++A DAD GVN +EY IV DG DG F I+
Sbjct: 276 PVASVVAR-IKAADADIGVNAEMEYKIV----------DG---------DGLGIFKISPD 315
Query: 85 ---HQGQVTVNRSLDFEKTQRYLVTIVAS 110
+G +T+ + LDFE Y + I A+
Sbjct: 316 KDTQEGIITIQKELDFEAKTSYTLRIEAA 344
>sp|Q9HC56|PCDH9_HUMAN Protocadherin-9 OS=Homo sapiens GN=PCDH9 PE=1 SV=2
Length = 1237
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
V V + + PVG+++ + L A DAD G N + Y G R+ ++
Sbjct: 257 VEVHIPENAPVGTSVIQ-LHATDADIGSNAEIRYIF--------GAQVAPATKRLFALNN 307
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ G +TV RSLD E+T + VT++AS
Sbjct: 308 TT---------GLITVQRSLDREETAIHKVTVLAS 333
>sp|Q3SWX5|CADH6_BOVIN Cadherin-6 OS=Bos taurus GN=CDH6 PE=2 SV=1
Length = 790
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
+ + +P G+ I + ++A DAD G N +EY I +G G D V+
Sbjct: 276 KTPESSPPGTPIGR-IKASDADVGENAEIEYSIT----------EGEGLDMFDVI----- 319
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ +G +TV + LDFEK + Y + + AS
Sbjct: 320 -TDQETQEGIITVKKLLDFEKKKVYTLKVEAS 350
>sp|Q91XU7|CDHR1_RAT Cadherin-related family member 1 OS=Rattus norvegicus GN=Cdhr1 PE=2
SV=1
Length = 859
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 24/97 (24%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P + V + TP GS+IFK ++A D D G G V YF+
Sbjct: 139 PYNILVPENTPAGSSIFK-VQAEDKDTGSGGSVTYFLQSLHS------------------ 179
Query: 75 GYSYFSINLPHQG--QVTVNRSLDFEKTQRYLVTIVA 109
S F+++ H G ++ +LD+EK++ + +T+VA
Sbjct: 180 --SKFTVDR-HSGVLRLQAGATLDYEKSRAHFITVVA 213
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2
Length = 4349
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 23/98 (23%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
+ +P + D T G +F+ + A D D G NG V Y
Sbjct: 2071 KHLPYYTIIQDGTEPGDVLFQ-VSATDEDLGTNGAVTY---------------------E 2108
Query: 72 VVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
+ Y+YF I+ P+ G +++ + D++ +Y + ++A
Sbjct: 2109 FAEDYTYFRID-PYLGDISLKKPFDYQALNKYHLKVIA 2145
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 21/94 (22%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
P + V + P+ +T L A D DAG NG + Y I ADG
Sbjct: 718 FPQSIDVLESVPI-NTPLARLAATDPDAGFNGKLVYVI----------ADG--------- 757
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+ F I L G +TV LD+E T Y++ +
Sbjct: 758 NEEGCFDIEL-ETGLLTVAAPLDYEATNFYILNV 790
>sp|Q90762|CADH6_CHICK Cadherin-6 OS=Gallus gallus GN=CDH6 PE=2 SV=1
Length = 790
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
R + TP S I + ++A DAD N +EY I T DGY
Sbjct: 276 RAPESTPPDSPIGR-IKANDADVDENAEIEYSI-------------------TEGDGYDM 315
Query: 79 FSINLP---HQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I +G +TV ++LDFE Y++ + A+
Sbjct: 316 FGITTDKDTQEGIITVKKALDFENKNLYILKVEAT 350
>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1
Length = 4555
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
++ P V V + PVG+ I K ++A DAD+G NG V + T
Sbjct: 726 KSFPSDVAVKENMPVGTNILK-IKAYDADSGFNGKVLF---------------------T 763
Query: 72 VVDGY--SYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+ DG S F+I++ GQ+ V +D E T Y++ I
Sbjct: 764 ISDGNTDSCFNIDM-ETGQLKVLMPMDREHTDLYVLNI 800
>sp|Q90763|CADH7_CHICK Cadherin-7 OS=Gallus gallus GN=CDH7 PE=2 SV=1
Length = 785
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 20 VSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYF 79
V + P+ S + + ++A DAD G N +EY IV DG+G +++V
Sbjct: 271 VPESLPLASVVAR-IKAADADVGPNAEMEYKIV--------DGDGLGVFKISVDKDT--- 318
Query: 80 SINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+G +T+ + LDFE Y + I A+
Sbjct: 319 -----QEGIITIQKELDFEAKTSYTLRIEAA 344
>sp|Q6PB90|PCDBE_MOUSE Protocadherin beta-14 OS=Mus musculus GN=Pcdhb14 PE=1 SV=2
Length = 796
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V+V + +PVGS + + A D DAG +G + Y + S ++ +
Sbjct: 249 VQVQENSPVGSLVL-TVSARDLDAGTHGELSYSLFQSSNQVL-----------------Q 290
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F +N G++ V + LDFE+ Q Y + I AS
Sbjct: 291 AFEVNT-DTGEIRVRKLLDFEEIQSYRMEIEAS 322
>sp|Q9UN66|PCDB8_HUMAN Protocadherin beta-8 OS=Homo sapiens GN=PCDHB8 PE=2 SV=3
Length = 801
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V++S+ +P+ + K + A D D GVNG + Y + + D+ T
Sbjct: 250 VQISEDSPISFLVVK-VSATDVDTGVNGEISYSLFQASDEISKT---------------- 292
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F ++ G++ + + LDFEK Q Y V I A
Sbjct: 293 -FKVDF-LTGEIRLKKQLDFEKFQSYEVNIEA 322
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D+G N V Y ++P QD ++ A S SIN G + RSL
Sbjct: 476 ATDRDSGTNAQVTYSLLPPQDPHLPLA--------------SLVSINT-DNGHLFALRSL 520
Query: 96 DFEKTQRYLVTIVAS 110
D+E Q + + AS
Sbjct: 521 DYEALQAFEFRVGAS 535
>sp|Q5DRC6|PCDB8_PANTR Protocadherin beta-8 OS=Pan troglodytes GN=PCDHB8 PE=3 SV=1
Length = 801
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V++S+ +P+ + K + A D D GVNG + Y + + D+ T
Sbjct: 250 VQISEDSPISFLVVK-VSATDVDTGVNGEISYSLFQASDEISKT---------------- 292
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F ++ G++ + + LDFEK Q Y V I A
Sbjct: 293 -FKVDF-LTGEIRLKKQLDFEKFQSYEVNIEA 322
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
A D D+G N V Y ++P Q+ ++ A S SIN G + RSL
Sbjct: 476 ATDRDSGTNAQVTYSLLPPQNPHLPLA--------------SLVSINT-DNGHLFALRSL 520
Query: 96 DFEKTQRYLVTIVAS 110
D+E Q + + AS
Sbjct: 521 DYEALQAFEFRVGAS 535
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,914,154
Number of Sequences: 539616
Number of extensions: 1457873
Number of successful extensions: 3442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 579
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)