Query psy9047
Match_columns 110
No_of_seqs 132 out of 1054
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:35:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00028 Cadherin: Cadherin do 99.8 3E-18 6.4E-23 107.6 10.2 74 16-110 1-74 (93)
2 cd00031 CA Cadherin repeat dom 99.5 1.3E-13 2.7E-18 95.9 10.6 75 15-110 1-75 (199)
3 cd00031 CA Cadherin repeat dom 99.5 1.1E-12 2.4E-17 91.2 11.2 82 8-110 99-180 (199)
4 KOG1219|consensus 99.5 4E-13 8.7E-18 118.2 9.8 81 7-110 2676-2756(4289)
5 KOG4289|consensus 99.4 2E-12 4.4E-17 110.8 9.6 83 6-110 369-451 (2531)
6 KOG1219|consensus 99.3 6.4E-12 1.4E-16 110.9 10.3 83 5-110 739-821 (4289)
7 KOG4289|consensus 99.3 1.4E-12 3E-17 111.8 4.8 82 8-110 266-347 (2531)
8 smart00112 CA Cadherin repeats 99.2 3.9E-11 8.4E-16 72.9 6.7 54 37-110 1-54 (79)
9 KOG1834|consensus 97.7 0.00016 3.5E-09 59.6 7.7 78 7-109 145-224 (952)
10 PF08266 Cadherin_2: Cadherin- 97.6 5.7E-05 1.2E-09 47.1 3.0 62 16-99 3-66 (84)
11 PF08758 Cadherin_pro: Cadheri 96.9 0.0092 2E-07 37.6 7.0 72 9-109 4-75 (90)
12 KOG1834|consensus 92.9 0.54 1.2E-05 39.6 7.2 78 12-109 33-115 (952)
13 smart00736 CADG Dystroglycan-t 69.1 24 0.00052 21.7 7.0 53 36-110 24-76 (97)
14 KOG4680|consensus 43.6 62 0.0013 22.2 4.3 34 17-51 109-142 (153)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 38.6 48 0.001 18.4 2.9 19 23-42 35-53 (66)
16 COG2706 3-carboxymuconate cycl 36.0 1.8E+02 0.004 22.8 6.4 71 5-94 258-332 (346)
17 PF10794 DUF2606: Protein of u 32.8 1.5E+02 0.0033 19.8 5.3 52 15-75 45-97 (131)
18 PHA02734 coat protein; Provisi 27.6 19 0.0004 24.2 -0.2 17 15-31 81-97 (149)
19 PF10633 NPCBM_assoc: NPCBM-as 27.3 86 0.0019 18.3 2.8 13 17-29 57-69 (78)
20 PF03671 Ufm1: Ubiquitin fold 26.3 64 0.0014 19.6 2.0 23 5-27 5-29 (76)
21 PF05345 He_PIG: Putative Ig d 25.4 1.2E+02 0.0027 16.4 4.1 32 76-110 13-45 (49)
22 PF15418 DUF4625: Domain of un 24.3 1E+02 0.0022 20.5 2.9 23 17-40 97-119 (132)
23 COG1881 Phospholipid-binding p 23.4 2.7E+02 0.0058 19.5 8.8 31 23-54 55-86 (174)
No 1
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.78 E-value=3e-18 Score=107.56 Aligned_cols=74 Identities=28% Similarity=0.516 Sum_probs=70.1
Q ss_pred EEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccCC
Q psy9047 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95 (110)
Q Consensus 16 y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~L 95 (110)
|.+.|+||.++|+.+++ +.|.|+|.+.|+.+.|+|..+.+ ..+|.|+ +.+|.|.+.++|
T Consensus 1 Y~~~v~E~~~~g~~v~~-v~a~D~D~~~n~~i~y~i~~~~~-------------------~~~F~I~-~~tg~i~~~~~L 59 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQ-VTATDPDSGPNSQITYSILGGNP-------------------DGLFSID-PNTGEISLKKPL 59 (93)
T ss_dssp EEEEEETTGSTSSEEEE-EEEEESSTSTTSSEEEEEEETTS-------------------TTSEEEE-TTTTEEEESSSS
T ss_pred CEEEEECCCCCCCEEEE-EEEEeCCCCCCceEEEEEecCcc-------------------cCceEEe-eeeeccccceec
Confidence 88999999999999999 99999999999999999998754 5899999 999999999999
Q ss_pred CcCCCCEEEEEEEEC
Q psy9047 96 DFEKTQRYLVTIVAS 110 (110)
Q Consensus 96 D~E~~~~y~l~V~A~ 110 (110)
|||....|.|.|.|+
T Consensus 60 D~E~~~~y~l~v~a~ 74 (93)
T PF00028_consen 60 DRETQSSYQLTVRAT 74 (93)
T ss_dssp CTTTTSEEEEEEEEE
T ss_pred CcccCCEEEEEEEEE
Confidence 999999999999984
No 2
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.53 E-value=1.3e-13 Score=95.94 Aligned_cols=75 Identities=36% Similarity=0.577 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 15 ~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
+|.+.|+||.++|+.+++ +.|.|+|.+.|+.+.|+|..... ..+|.|+ +.+|.|++.+.
T Consensus 1 ~~~~~i~En~~~g~~v~~-~~a~D~D~~~~~~~~y~i~~~~~-------------------~~~F~i~-~~tG~l~~~~~ 59 (199)
T cd00031 1 SYSVSVPENAPPGTVVGT-VSATDPDSGENGRVTYSILGGNE-------------------DGLFSID-PNTGVITTTKP 59 (199)
T ss_pred CeEEEEeCCCCCCCEEEE-EEEECCCCCCCceEEEEEeCCCC-------------------cccEEEe-CCCCEEEECCC
Confidence 488999999999999999 99999999999999999998643 3789999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|+|+
T Consensus 60 lD~e~~~~~~l~v~a~ 75 (199)
T cd00031 60 LDREEQSEYTLTVVAS 75 (199)
T ss_pred CCCcCCceEEEEEEEE
Confidence 9999999999999884
No 3
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.47 E-value=1.1e-12 Score=91.19 Aligned_cols=82 Identities=30% Similarity=0.469 Sum_probs=73.6
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
...|.+..|.+.|+|+.++|+.+++ +.|+|+|.+.|+.+.|+|..... ..+|.|+ +.+|
T Consensus 99 ~P~~~~~~~~~~v~e~~~~~~~i~~-~~a~D~D~~~~~~~~y~l~~~~~-------------------~~~f~i~-~~~G 157 (199)
T cd00031 99 PPVFEQSSYEASVPENAPPGTVVGT-VTATDADSGENAKLTYSILSGND-------------------KELFSID-PNTG 157 (199)
T ss_pred CCcccccceEEEEeCCCCCCCEEEE-EEEEcCCCCCCccEEEEEeCCCC-------------------CCEEEEe-CCce
Confidence 3455667889999999999999999 99999999999999999987642 4799999 9999
Q ss_pred eEEEccCCCcCCCCEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.|.+.+.||+|....|.+.|.|+
T Consensus 158 ~i~~~~~ld~e~~~~~~l~v~a~ 180 (199)
T cd00031 158 IITLAKPLDREEKSSYELTVVAT 180 (199)
T ss_pred EEEeCCccCCccCceEEEEEEEE
Confidence 99999999999999999999874
No 4
>KOG1219|consensus
Probab=99.45 E-value=4e-13 Score=118.16 Aligned_cols=81 Identities=31% Similarity=0.550 Sum_probs=75.6
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCc
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~t 86 (110)
.+.-|...+|.+.+.||.|+|+.+.+ ++|.|.|.|.||+|+|++.+. ..+|.|+ +++
T Consensus 2676 NaPvFe~d~y~f~i~En~pvGtsV~q-f~AsD~Ds~~nGqirysl~~~---------------------v~yF~In-~et 2732 (4289)
T KOG1219|consen 2676 NAPVFEKDPYLFIIEENSPVGTSVIQ-FHASDMDSGNNGQIRYSLTSP---------------------VPYFAIN-PET 2732 (4289)
T ss_pred CCccccCCceeEEEeccCCCCceEEE-EEeeccCCCCCceEEEEEcCC---------------------cceEEEc-CCC
Confidence 45678899999999999999999999 999999999999999999863 3499999 999
Q ss_pred eeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 87 GQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 87 G~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
|+|++...||+|+++.|.|.|.|+
T Consensus 2733 GwlTt~~eld~ek~d~y~lkv~At 2756 (4289)
T KOG1219|consen 2733 GWLTTLFELDLEKQDLYSLKVVAT 2756 (4289)
T ss_pred CeeeehhhhccccCCceEEEEEEe
Confidence 999999999999999999999985
No 5
>KOG4289|consensus
Probab=99.39 E-value=2e-12 Score=110.77 Aligned_cols=83 Identities=27% Similarity=0.415 Sum_probs=77.1
Q ss_pred eecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCC
Q psy9047 6 KVSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85 (110)
Q Consensus 6 ~~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~ 85 (110)
-....|..+.|.++|+|+..+++.+++ |+|+|.|.|.||.|+|+|.++.. .+.|.|| ..
T Consensus 369 DNaPqFse~~Yvvqv~Edvt~~avvlr-V~AtDrD~g~Ng~VHYsi~Sgn~-------------------~G~f~id-~~ 427 (2531)
T KOG4289|consen 369 DNAPQFSEKRYVVQVREDVTPPAVVLR-VTATDRDKGTNGKVHYSIASGNG-------------------RGQFYID-SL 427 (2531)
T ss_pred CCCccccccceEEEecccCCCCceEEE-EEecccCCCcCceEEEEeeccCc-------------------cccEEEe-cc
Confidence 356788999999999999999999999 99999999999999999998754 6889999 99
Q ss_pred ceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 86 QGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 86 tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
+|+|.+..+||+|.. .|.+.|+|.
T Consensus 428 tGel~vv~plD~e~~-~ytl~IrAq 451 (2531)
T KOG4289|consen 428 TGELDVVEPLDFENS-EYTLRIRAQ 451 (2531)
T ss_pred cceEEEeccccccCC-eeEEEEEcc
Confidence 999999999999999 999999984
No 6
>KOG1219|consensus
Probab=99.34 E-value=6.4e-12 Score=110.88 Aligned_cols=83 Identities=31% Similarity=0.374 Sum_probs=78.3
Q ss_pred eeecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 5 VKVSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 5 ~~~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
++.+.+|.+..|+++|+|++.+|+.++. |.|.|.|.|.||+++|+|... ...|+|| +
T Consensus 739 ndn~p~f~e~sy~vtvsedtepgs~Ia~-vetnd~D~g~NG~v~fsL~n~---------------------sdvfsId-p 795 (4289)
T KOG1219|consen 739 NDNTPIFVERSYHVTVSEDTEPGSFIAH-VETNDTDGGNNGMVSFSLLNK---------------------SDVFSID-P 795 (4289)
T ss_pred ccCCccccccceEEEEecCCCCCceEEE-EEecccCCCCCceEEEEecCC---------------------cceEEec-C
Confidence 5678899999999999999999999999 999999999999999999863 5789999 9
Q ss_pred CceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|.+.++||+|-+..|.|.|+|+
T Consensus 796 ~tGivv~~~sLdrE~q~~y~l~I~a~ 821 (4289)
T KOG1219|consen 796 FTGIVVTSKSLDREGQTSYHLKIEAR 821 (4289)
T ss_pred cccEEEeccccCcccCceeEEEEEEc
Confidence 99999999999999999999999985
No 7
>KOG4289|consensus
Probab=99.32 E-value=1.4e-12 Score=111.76 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=76.1
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
+..|.|+.|.-++.||.++|..+++ ++|+|.|+++|+.|.|++..+.. ...|.|| +.+|
T Consensus 266 sPvFEq~~Y~e~lREn~evGy~vLt-vrAtD~Dsp~Nani~Yrl~eg~~-------------------~~~f~in-~rSG 324 (2531)
T KOG4289|consen 266 SPVFEQDEYREELRENLEVGYEVLT-VRATDGDSPPNANIRYRLLEGNA-------------------KNVFEIN-PRSG 324 (2531)
T ss_pred CcccchhHHHHHHhhccccCceEEE-EEeccCCCCCCCceEEEecCCCc-------------------cceeEEc-Cccc
Confidence 4567888899999999999999999 99999999999999999998743 6799999 9999
Q ss_pred eEEEccCCCcCCCCEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.|.+..+||||....|+|.|+|+
T Consensus 325 vI~T~a~lDRE~~~~y~L~VeAs 347 (2531)
T KOG4289|consen 325 VISTRAPLDREELESYQLDVEAS 347 (2531)
T ss_pred eeeccCccCHHhhhheEEEEEec
Confidence 99999999999999999999985
No 8
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.23 E-value=3.9e-11 Score=72.88 Aligned_cols=54 Identities=39% Similarity=0.674 Sum_probs=48.5
Q ss_pred eeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 37 VDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 37 ~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
+|+|.|.|+.+.|+|..+.. ..+|.|+ +.+|.|.+.++||||....|.|.|+|+
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~-------------------~~~F~i~-~~tg~i~~~~~LD~e~~~~y~l~v~a~ 54 (79)
T smart00112 1 TDADSGENGKVTYSILSGNE-------------------DGLFSID-PETGEITTTKPLDREEQPEYTLTVEAT 54 (79)
T ss_pred CCCCCCcCcEEEEEEecCCC-------------------CCEEEEe-CCccEEEeCCccCeeCCCeEEEEEEEE
Confidence 48999999999999997643 3799999 999999999999999999999999984
No 9
>KOG1834|consensus
Probab=97.72 E-value=0.00016 Score=59.63 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=64.3
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC-CCceE-EEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG-VNGLV-EYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g-~n~~i-~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
-+..|.+.-|.+.|-|.- +-..+++ +.|.|.|.+ ++++| .|.|... .-.|.||
T Consensus 145 ~AP~f~ep~Yka~V~EGK-~yd~il~-veAiD~DCspq~sqIC~YEI~t~---------------------d~PFaId-- 199 (952)
T KOG1834|consen 145 FAPVFKEPWYKAHVTEGK-VYDSILR-VEAIDKDCSPQYSQICEYEITTP---------------------DVPFAID-- 199 (952)
T ss_pred cCchhcccceeeEEecce-eeeeeEE-EEeecCCCCCcccceeEEEecCC---------------------CCceEEc--
Confidence 356677888888888854 4456788 999999987 56776 7888852 4569999
Q ss_pred CceeEEEccCCCcCCCCEEEEEEEE
Q psy9047 85 HQGQVTVNRSLDFEKTQRYLVTIVA 109 (110)
Q Consensus 85 ~tG~i~~~~~LD~E~~~~y~l~V~A 109 (110)
+.|-|+...+|.|.+..+|.|+|.|
T Consensus 200 n~G~irnTekLny~ke~~Y~ltVtA 224 (952)
T KOG1834|consen 200 NDGNIRNTEKLNYTKEHQYKLTVTA 224 (952)
T ss_pred CCCccccccccccccceeEEEEEEE
Confidence 8999999999999999999999987
No 10
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=97.62 E-value=5.7e-05 Score=47.12 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCCcEEEeeeEEeeCCCCCC--ceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEcc
Q psy9047 16 VIVRVSDLTPVGSTIFKNLRAVDADAGVN--GLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93 (110)
Q Consensus 16 y~~~v~En~~~gs~v~~~v~A~D~D~g~n--~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~ 93 (110)
...+|+|..++|+.|+. + |.|.-.... ....|+|.+.. ...||.++ +.+|.|.+..
T Consensus 3 i~YsV~EE~~~Gt~IGn-i-a~dL~l~~~~l~~~~~ri~s~~-------------------~~~~~~v~-~~tG~L~v~~ 60 (84)
T PF08266_consen 3 IRYSVPEEMPPGTVIGN-I-AKDLGLDPQSLSSRNFRIVSEG-------------------NSQYFRVN-EKTGDLFVSE 60 (84)
T ss_dssp EEEEEESS--TT-EEEE-C-CCCCT--HHHHCCTTBEEE-SS-------------------SS-SEEE--TTTSEEEESS
T ss_pred eEEEeecCCCCCCEEEE-h-HHhhCCCcccccccceEEeecC-------------------CcceeEec-CCceeEEeCC
Confidence 45789999999999998 7 444422111 11245555432 26899999 9999999999
Q ss_pred CCCcCC
Q psy9047 94 SLDFEK 99 (110)
Q Consensus 94 ~LD~E~ 99 (110)
.+|||.
T Consensus 61 rIDRE~ 66 (84)
T PF08266_consen 61 RIDREE 66 (84)
T ss_dssp --SCCC
T ss_pred ccCHHH
Confidence 999997
No 11
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=96.85 E-value=0.0092 Score=37.61 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=35.8
Q ss_pred CccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCcee
Q psy9047 9 NRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88 (110)
Q Consensus 9 ~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~ 88 (110)
.-|.+..|.+.||.+...|..+++ |.-.|- ..+.++.|.-.+ +.|.|+ ..|.
T Consensus 4 pGF~~~~~~~~Vp~~l~~g~~lg~-V~f~dC--~~~~~~~~~ssD-----------------------pdF~V~--~DGs 55 (90)
T PF08758_consen 4 PGFSQKKYTFEVPSNLEAGQPLGK-VNFEDC--TGRRRVIFESSD-----------------------PDFRVL--EDGS 55 (90)
T ss_dssp -B--S-EEEE----SS-SS--EEE----B----SS---EEEE--------------------------SEEEEE--TTTE
T ss_pred CCcccceEEEEcCchhhCCcEEEE-EEeccC--CCCCceEEecCC-----------------------CCEEEc--CCCe
Confidence 358899999999999999999999 998876 345668886653 479998 7899
Q ss_pred EEEccCCCcCCCCEEEEEEEE
Q psy9047 89 VTVNRSLDFEKTQRYLVTIVA 109 (110)
Q Consensus 89 i~~~~~LD~E~~~~y~l~V~A 109 (110)
|.+.+++.....+. .+.|.|
T Consensus 56 Vy~~r~v~l~~~~~-~F~V~a 75 (90)
T PF08758_consen 56 VYAKRPVQLSSEQR-SFTVHA 75 (90)
T ss_dssp EEEES--S-SSS-E-EEEEEE
T ss_pred EEEeeeEecCCCce-EEEEEE
Confidence 99999988765432 455544
No 12
>KOG1834|consensus
Probab=92.93 E-value=0.54 Score=39.59 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=54.4
Q ss_pred CCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC--CCceE-EEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce-
Q psy9047 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAG--VNGLV-EYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG- 87 (110)
Q Consensus 12 ~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g--~n~~i-~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG- 87 (110)
....|..-|.||...=.... |+.|-|.|.. ..|.| -|.|-.+.- + ....-+| ..+|
T Consensus 33 ie~ey~gvV~Endntvll~P-pl~aLdkdaplr~ageiC~fklhgq~v-----------------P-FdavVvd-K~TGe 92 (952)
T KOG1834|consen 33 IEEEYHGVVTENDNTVLLDP-PLAALDKDAPLRYAGEICGFKLHGQPV-----------------P-FDAVVVD-KYTGE 92 (952)
T ss_pred cccceeEEEEeCCceEEeCC-CeeeecCCCCcccccccceeEecCCCC-----------------C-ceEEEEe-ccCCc
Confidence 35678889999875433223 4888888874 23444 577765432 1 3445567 6665
Q ss_pred -eEEEccCCCcCCCCEEEEEEEE
Q psy9047 88 -QVTVNRSLDFEKTQRYLVTIVA 109 (110)
Q Consensus 88 -~i~~~~~LD~E~~~~y~l~V~A 109 (110)
.|+.+.+||.|.+..|+|+|+|
T Consensus 93 gvlRaK~~lDCelqkeytf~iQA 115 (952)
T KOG1834|consen 93 GVLRAKEPLDCELQKEYTFTIQA 115 (952)
T ss_pred eEEeecCcccccccccceEEEEE
Confidence 6788899999999999999998
No 13
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=69.14 E-value=24 Score=21.73 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=32.9
Q ss_pred EeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 36 A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
..|+| +..++|++...... ....|+.+| +.++.+.- .+.+.+ ...|.+.|.|+
T Consensus 24 F~d~d---~~~lty~~~~~~~~----------------~lP~Wl~fd-~~~~~~~G-tP~~~~-~g~~~i~v~a~ 76 (97)
T smart00736 24 FTDAD---GDTLTYSATLSDGS----------------ALPSWLSFD-SDTGTLSG-TPTNSD-VGSLSLKVTAT 76 (97)
T ss_pred eECCC---CCeEEEEEEeCCCC----------------CCCCeEEEe-CCCCEEEE-ECCCCC-CcEEEEEEEEE
Confidence 45776 45788988643210 113588999 88877766 344433 35588888774
No 14
>KOG4680|consensus
Probab=43.57 E-value=62 Score=22.21 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=25.7
Q ss_pred EEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEE
Q psy9047 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFI 51 (110)
Q Consensus 17 ~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi 51 (110)
.+.+|--.|||+.+++ ++|.|.+.+.-.=|++++
T Consensus 109 sq~LPg~tPPG~Y~lk-m~~~d~~~~~LTCisfsf 142 (153)
T KOG4680|consen 109 SQVLPGYTPPGSYVLK-MTAYDAKGKELTCISFSF 142 (153)
T ss_pred eEeccCcCCCceEEEE-EEeecCCCCEEEEEEEEE
Confidence 4568889999999999 999999865433344444
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=38.61 E-value=48 Score=18.40 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCCCCcEEEeeeEEeeCCCC
Q psy9047 23 LTPVGSTIFKNLRAVDADAG 42 (110)
Q Consensus 23 n~~~gs~v~~~v~A~D~D~g 42 (110)
+.++|.-.+. |+|.|.+..
T Consensus 35 ~L~~G~Y~l~-V~a~~~~~~ 53 (66)
T PF07495_consen 35 NLPPGKYTLE-VRAKDNNGK 53 (66)
T ss_dssp S--SEEEEEE-EEEEETTS-
T ss_pred eCCCEEEEEE-EEEECCCCC
Confidence 5678999999 999998865
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=36.04 E-value=1.8e+02 Score=22.78 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=37.9
Q ss_pred eeecCccCCCcEEEEEeCCCCCCcEEEe-eeEEe---eCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEE
Q psy9047 5 VKVSNRKRTIPVIVRVSDLTPVGSTIFK-NLRAV---DADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFS 80 (110)
Q Consensus 5 ~~~~~~~~~~~y~~~v~En~~~gs~v~~-~v~A~---D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 80 (110)
+-+++|.-+....+.|.++...=..+.. +..+. |-+....+++.+-..+.. +.-..|.
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s------------------d~i~vf~ 319 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS------------------DNITVFE 319 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC------------------CcEEEEE
Confidence 4466777777677777776543111111 11111 222233344444433322 2256899
Q ss_pred EcCCCceeEEEccC
Q psy9047 81 INLPHQGQVTVNRS 94 (110)
Q Consensus 81 Id~~~tG~i~~~~~ 94 (110)
+| +++|+|.+...
T Consensus 320 ~d-~~TG~L~~~~~ 332 (346)
T COG2706 320 RD-KETGRLTLLGR 332 (346)
T ss_pred Ec-CCCceEEeccc
Confidence 99 99999987643
No 17
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=32.79 E-value=1.5e+02 Score=19.77 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCC-CcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCC
Q psy9047 15 PVIVRVSDLTPV-GSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75 (110)
Q Consensus 15 ~y~~~v~En~~~-gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~ 75 (110)
.++++-.|..|+ |..+.- +.|.|.|-.++-.+--+|-. ++..+...|..+..
T Consensus 45 T~hVen~e~~pi~~~ev~l-mKa~ds~~qPs~eig~~IGK--------TD~~Gki~Wk~~~k 97 (131)
T PF10794_consen 45 TFHVENAEGQPIKDFEVTL-MKAADSDPQPSKEIGISIGK--------TDEEGKIIWKNGRK 97 (131)
T ss_pred EEEEecCCCCcccceEEEE-EeccccCCCCchhhceeecc--------cCCCCcEEEecCCc
Confidence 445666777777 566666 89999998888877777755 44455666655543
No 18
>PHA02734 coat protein; Provisional
Probab=27.61 E-value=19 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.1
Q ss_pred cEEEEEeCCCCCCcEEE
Q psy9047 15 PVIVRVSDLTPVGSTIF 31 (110)
Q Consensus 15 ~y~~~v~En~~~gs~v~ 31 (110)
.|.-+||||.|+++.-+
T Consensus 81 vyfsqvpenappns~~~ 97 (149)
T PHA02734 81 VYFSQVPENAPPNSQAI 97 (149)
T ss_pred HhhhcCcccCCCcCCCC
Confidence 67889999999997654
No 19
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.32 E-value=86 Score=18.27 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=4.2
Q ss_pred EEEEeCCCCCCcE
Q psy9047 17 IVRVSDLTPVGST 29 (110)
Q Consensus 17 ~~~v~En~~~gs~ 29 (110)
.+.+|++..+|..
T Consensus 57 ~V~vp~~a~~G~y 69 (78)
T PF10633_consen 57 TVTVPADAAPGTY 69 (78)
T ss_dssp EEEE-TT--SEEE
T ss_pred EEECCCCCCCceE
Confidence 3444444444443
No 20
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=26.28 E-value=64 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=14.7
Q ss_pred eeecC-ccCCCcE-EEEEeCCCCCC
Q psy9047 5 VKVSN-RKRTIPV-IVRVSDLTPVG 27 (110)
Q Consensus 5 ~~~~~-~~~~~~y-~~~v~En~~~g 27 (110)
+|+.. .++..+| .++|||++|.-
T Consensus 5 fKI~ltsDp~~p~kv~sVPE~apft 29 (76)
T PF03671_consen 5 FKITLTSDPKLPYKVISVPEEAPFT 29 (76)
T ss_dssp EEEEESTSSTS-EEEEEEETTSBHH
T ss_pred EEEEEccCCCCcceEEecCCCCchH
Confidence 44443 3567888 68899997643
No 21
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=25.44 E-value=1.2e+02 Score=16.37 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=22.7
Q ss_pred cceEEEcCCCceeEEEccCCCcC-CCCEEEEEEEEC
Q psy9047 76 YSYFSINLPHQGQVTVNRSLDFE-KTQRYLVTIVAS 110 (110)
Q Consensus 76 ~~~F~Id~~~tG~i~~~~~LD~E-~~~~y~l~V~A~ 110 (110)
...+.|| +.+|.|.-.- +.. ....|.+.|.|+
T Consensus 13 P~gLs~d-~~tG~isGtp--~~~~~~G~y~~~vtat 45 (49)
T PF05345_consen 13 PSGLSLD-PSTGTISGTP--TSSVQPGTYTFTVTAT 45 (49)
T ss_pred CCcEEEe-CCCCEEEeec--CCCccccEEEEEEEEE
Confidence 4578999 9999997652 223 235899988874
No 22
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=24.30 E-value=1e+02 Score=20.54 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred EEEEeCCCCCCcEEEeeeEEeeCC
Q psy9047 17 IVRVSDLTPVGSTIFKNLRAVDAD 40 (110)
Q Consensus 17 ~~~v~En~~~gs~v~~~v~A~D~D 40 (110)
.+.||++.++|..=+. +.++|..
T Consensus 97 ~i~IPa~a~~G~YH~~-i~VtD~~ 119 (132)
T PF15418_consen 97 HIDIPADAPAGDYHFM-ITVTDAA 119 (132)
T ss_pred eeeCCCCCCCcceEEE-EEEEECC
Confidence 5788999999999898 9999974
No 23
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=23.38 E-value=2.7e+02 Score=19.50 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCCCCcEEEeeeEEeeCCCC-CCceEEEEEccC
Q psy9047 23 LTPVGSTIFKNLRAVDADAG-VNGLVEYFIVPS 54 (110)
Q Consensus 23 n~~~gs~v~~~v~A~D~D~g-~n~~i~Ysi~~~ 54 (110)
+.|.|+..+. +...|+|.. ..+-+++-+..-
T Consensus 55 ~~P~~tkS~A-L~v~DpDAP~g~~~~HWvv~nI 86 (174)
T COG1881 55 GVPEGTKSFA-LTVDDPDAPTGGGWVHWVVANI 86 (174)
T ss_pred CCCCCCeeEE-EEEECCCCCCCCcEEEEEEEcc
Confidence 4667888898 999999998 455555555543
Done!