Query psy9047
Match_columns 110
No_of_seqs 132 out of 1054
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:35:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ee0_A Protocadherin-9; Ca dom 99.8 4.4E-21 1.5E-25 124.5 7.9 86 7-110 10-95 (114)
2 2yst_A Protocadherin-7; BH-PCD 99.8 1E-20 3.6E-25 123.3 8.2 85 7-110 10-94 (119)
3 1zvn_A Mn-cadherin; strand dim 99.8 2.5E-18 8.5E-23 109.4 7.6 72 16-110 6-79 (99)
4 1zxk_A Cadherin-8; strand dime 99.8 2.9E-18 9.9E-23 108.8 7.5 72 16-110 5-78 (98)
5 3mvs_A Cadherin-23, otocadheri 99.7 1.9E-17 6.6E-22 117.0 9.5 80 8-110 106-185 (210)
6 3qrb_A Cadherin-1; cell adhesi 99.7 4.4E-17 1.5E-21 115.3 9.4 86 8-110 105-194 (213)
7 2a4e_A Cadherin-11; dimer, cal 99.7 5.8E-17 2E-21 115.3 9.7 80 8-110 104-187 (215)
8 2x2u_A Proto-oncogene tyrosine 99.7 6.7E-18 2.3E-22 122.2 4.7 78 11-110 139-216 (246)
9 4apx_B Protocadherin-15, otoca 99.7 1.6E-17 5.6E-22 120.2 6.6 87 8-110 124-215 (242)
10 3lnd_A CDH6 protein, cadherin 99.7 8.3E-17 2.8E-21 113.5 9.4 81 7-110 102-186 (207)
11 2qvi_A Cadherin-2; beta barrel 99.7 7.1E-17 2.4E-21 114.6 9.0 86 8-110 105-193 (215)
12 3k6d_A T-cadherin; cell adhesi 99.7 8E-17 2.7E-21 102.1 7.3 74 16-110 5-80 (99)
13 2yqg_A Desmoglein-2, HDGC; cad 99.7 1.1E-17 3.7E-22 109.9 2.7 87 6-110 7-93 (123)
14 3k6i_A T-cadherin; cell adhesi 99.7 4.2E-16 1.4E-20 98.7 9.0 73 17-110 6-80 (99)
15 3k5r_A Cadherin 13; mouse, str 99.7 2.2E-16 7.4E-21 112.0 8.3 87 7-110 104-197 (218)
16 3ppe_A Vascular endothelial ca 99.7 4.7E-16 1.6E-20 109.5 9.9 79 8-110 101-183 (203)
17 3k6f_A T-cadherin; cell adhesi 99.7 3.6E-16 1.2E-20 99.2 8.4 73 17-110 7-81 (100)
18 1ncg_A N-cadherin; cell adhesi 99.6 4.1E-16 1.4E-20 100.4 7.0 76 15-110 6-83 (110)
19 2a62_A Cadherin-8; extracellul 99.6 6.6E-16 2.2E-20 115.6 7.4 82 8-110 212-297 (322)
20 2omz_B Epithelial-cadherin; le 99.6 1E-15 3.6E-20 98.0 6.7 74 17-110 10-85 (105)
21 3ubf_A Neural-cadherin; cell a 99.6 3.9E-15 1.3E-19 110.6 9.6 81 7-110 102-184 (316)
22 2a62_A Cadherin-8; extracellul 99.6 2.3E-15 7.9E-20 112.6 7.6 80 8-110 103-186 (322)
23 3ubf_A Neural-cadherin; cell a 99.6 9.3E-15 3.2E-19 108.6 10.2 79 8-110 211-293 (316)
24 3q2w_A Cadherin-2; cell adhesi 99.6 7.8E-15 2.7E-19 116.4 8.8 87 7-110 104-193 (559)
25 3mvs_A Cadherin-23, otocadheri 99.6 2.6E-15 8.9E-20 106.0 5.3 81 6-110 3-85 (210)
26 1l3w_A EP-cadherin, C-cadherin 99.6 1.5E-14 5.2E-19 114.5 9.7 87 7-110 110-200 (546)
27 3q2v_A Cadherin-1; cell adhesi 99.5 1.3E-14 4.3E-19 115.0 8.7 86 8-110 105-194 (550)
28 2x2u_A Proto-oncogene tyrosine 99.5 1.4E-15 4.7E-20 110.0 2.1 79 10-110 2-100 (246)
29 3q2w_A Cadherin-2; cell adhesi 99.5 6.5E-14 2.2E-18 111.1 10.3 80 9-110 336-419 (559)
30 3q2v_A Cadherin-1; cell adhesi 99.5 5.1E-14 1.7E-18 111.5 9.6 81 8-110 329-414 (550)
31 1wyj_A Protocadherin beta 14; 99.5 2.6E-15 8.9E-20 98.9 1.3 75 12-109 9-90 (125)
32 1q55_A EP-cadherin, C-cadherin 99.5 6E-14 2E-18 116.5 9.7 86 8-110 260-349 (880)
33 2a4e_A Cadherin-11; dimer, cal 99.5 7.5E-14 2.6E-18 99.1 8.6 73 15-110 5-79 (215)
34 2qvi_A Cadherin-2; beta barrel 99.5 1.1E-13 3.7E-18 98.2 8.1 76 17-110 6-81 (215)
35 3ubh_A Neural-cadherin; cell a 99.5 1.7E-13 5.9E-18 105.2 9.6 80 8-110 216-298 (419)
36 1l3w_A EP-cadherin, C-cadherin 99.5 4.3E-14 1.5E-18 111.9 6.2 81 8-110 335-419 (546)
37 3ubh_A Neural-cadherin; cell a 99.5 3.4E-13 1.2E-17 103.6 9.7 80 8-110 108-189 (419)
38 3lnd_A CDH6 protein, cadherin 99.4 1E-13 3.6E-18 97.5 4.1 71 17-110 6-78 (207)
39 1q55_A EP-cadherin, C-cadherin 99.4 2.1E-13 7.1E-18 113.3 6.2 81 8-110 484-568 (880)
40 3qrb_A Cadherin-1; cell adhesi 99.4 9.5E-13 3.3E-17 92.9 8.0 74 17-110 6-81 (213)
41 1wuz_A Pcdha4 protein, CNR-EC1 99.4 3E-14 1E-18 90.8 -0.4 74 14-109 3-84 (103)
42 3ppe_A Vascular endothelial ca 99.4 2.4E-12 8E-17 90.5 8.1 69 17-110 6-76 (203)
43 3k5r_A Cadherin 13; mouse, str 99.3 2.3E-12 7.9E-17 91.1 7.5 73 17-110 7-81 (218)
44 4apx_B Protocadherin-15, otoca 98.9 6.6E-09 2.3E-13 74.9 7.4 74 14-108 20-96 (242)
45 1op4_A Neural-cadherin; beta s 86.7 3.2 0.00011 27.8 6.9 64 8-98 33-96 (159)
No 1
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=124.53 Aligned_cols=86 Identities=33% Similarity=0.427 Sum_probs=77.4
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCc
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~t 86 (110)
.+..|.+..|.+.|+||.++|+.+++ ++|+|+|.|.|++|+|+|....+. ....+|.|| +.+
T Consensus 10 n~P~F~~~~y~~~v~En~~~Gt~v~~-v~A~D~D~g~n~~i~Y~i~~~~~~----------------~~~~~F~Id-~~t 71 (114)
T 2ee0_A 10 NRPVFKEGQVEVHIPENAPVGTSVIQ-LHATDADIGSNAEIRYIFGAQVAP----------------ATKRLFALN-NTT 71 (114)
T ss_dssp CCCCCSCSEEEEEEETTCCTTCEEEE-CCCCSCSSCCCSCCEEEECSSCCH----------------HHHHHEEEC-TTT
T ss_pred CCCCcCCCcEEEEEECCCCCCCEEEE-EEEEeCCCCCCcEEEEEEccCCCC----------------CccceEEEe-CCe
Confidence 46789999999999999999999999 999999999999999999864321 125799999 999
Q ss_pred eeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 87 GQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 87 G~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
|.|++.++||||....|.|.|+|+
T Consensus 72 G~I~~~~~LD~E~~~~y~l~V~A~ 95 (114)
T 2ee0_A 72 GLITVQRSLDREETAIHKVTVLAS 95 (114)
T ss_dssp CEEEECSCCCTTTCSEEEEEEEEE
T ss_pred eEEEECccCCcccCcEEEEEEEEE
Confidence 999999999999999999999984
No 2
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=123.30 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=77.2
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCc
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~t 86 (110)
....|.+..|.+.|+||.++|+.+++ ++|+|+|.|.|++|+|+|..... ....+|.|| +.+
T Consensus 10 n~P~F~~~~y~~~v~En~~~Gt~v~~-v~A~D~D~g~n~~i~Y~i~~~~~-----------------~~~~~F~Id-~~t 70 (119)
T 2yst_A 10 NSPRFEKSVYEADLAENSAPGTPILQ-LRAADLDVGVNGQIEYVFGAATE-----------------SVRRLLRLD-ETS 70 (119)
T ss_dssp CCCCCSSSEEEEEEETTCCTTCEEEE-CCCCCSSSSCCSCCCCEECSCCT-----------------THHHHEEEC-TTT
T ss_pred CCCCcCCCcEEEEEECCCCCCCEEEE-EEEEeCCCCCCCeEEEEEecCCC-----------------ccccEEEEe-CCc
Confidence 45789999999999999999999999 99999999999999999987532 124789999 999
Q ss_pred eeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 87 GQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 87 G~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
|.|++.++||||....|.|.|+|+
T Consensus 71 G~I~~~~~LD~E~~~~y~l~V~A~ 94 (119)
T 2yst_A 71 GWLSVLHRIDREEVNQLRFTVMAR 94 (119)
T ss_dssp CEEEECSCCCTTTCSEEEEEEEEC
T ss_pred eEEEECccCCcccCCEEEEEEEEE
Confidence 999999999999999999999985
No 3
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.75 E-value=2.5e-18 Score=109.37 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=64.8
Q ss_pred EEEEEeCCCC--CCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEcc
Q psy9047 16 VIVRVSDLTP--VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93 (110)
Q Consensus 16 y~~~v~En~~--~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~ 93 (110)
+.++|+||.+ +|+.+++ ++ +|+|.| |++|+|+|....+ .++|.|| +.+|.|.+.+
T Consensus 6 ~~~~v~En~~~~~g~~v~~-v~-~D~D~g-Ng~v~Ysi~~~~~-------------------~~~F~Id-~~tG~i~~~~ 62 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGK-LH-SDMDRG-DGSIKYILSGEGA-------------------GIVFTID-DTTGDIHAIQ 62 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEE-CC-BTTCCS-SSCEEEEEEETTB-------------------TTTEEEC-TTTCEEEECS
T ss_pred cEEEEECCCCCCCCcEEEE-EE-ECCCCC-CCEEEEEEeCCCC-------------------CceEEEe-CCCCCEEECe
Confidence 5789999976 6899999 99 999999 9999999976432 3689999 9999999999
Q ss_pred CCCcCCCCEEEEEEEEC
Q psy9047 94 SLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 94 ~LD~E~~~~y~l~V~A~ 110 (110)
+||||+...|.|.|.|+
T Consensus 63 ~LDrE~~~~y~l~V~A~ 79 (99)
T 1zvn_A 63 RLDREERSQYTLRAQAL 79 (99)
T ss_dssp CCCTTTCSEEEEEEEEE
T ss_pred ecCCccCCeEEEEEEEE
Confidence 99999999999999984
No 4
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.75 E-value=2.9e-18 Score=108.83 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=62.9
Q ss_pred EEEEEeCCCC--CCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEcc
Q psy9047 16 VIVRVSDLTP--VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93 (110)
Q Consensus 16 y~~~v~En~~--~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~ 93 (110)
+.++|+||.+ +|+.+++ +. +|+|.| |++|+|+|..... .++|.|| +.+|.|++.+
T Consensus 5 ~~~~v~En~~~p~~~~v~~-v~-~D~D~g-N~~v~Ysi~~~~~-------------------~~~F~Id-~~tG~i~~~~ 61 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGR-LH-TDLDPG-SKKIKYILSGDGA-------------------GTIFQIN-DITGDIHAIK 61 (98)
T ss_dssp CEEEECGGGCSSSCEEEEE-CC-BCCCCC---CEEEEEEETTB-------------------TTTEEEC-TTTCEEEECS
T ss_pred ceEEEECCCCCCCCeEEEE-EE-ECCCCC-CCEEEEEEeCCCC-------------------CCEEEEE-CCccEEEECc
Confidence 5789999995 8999999 97 999999 9999999986422 3589999 9999999999
Q ss_pred CCCcCCCCEEEEEEEEC
Q psy9047 94 SLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 94 ~LD~E~~~~y~l~V~A~ 110 (110)
+||||+...|.|.|.|+
T Consensus 62 ~LDrE~~~~y~l~v~A~ 78 (98)
T 1zxk_A 62 RLDREEKAEYTLTAQAV 78 (98)
T ss_dssp CCCTTTCSEEEEEEEEE
T ss_pred cCCCcCCCeEEEEEEEE
Confidence 99999999999999984
No 5
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.73 E-value=1.9e-17 Score=116.97 Aligned_cols=80 Identities=39% Similarity=0.616 Sum_probs=74.3
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
...|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|+.+.|+|... .++|.|+ +.+|
T Consensus 106 ~P~f~~~~y~~~v~E~~~~gt~v~~-v~A~D~D~g~n~~v~Y~i~~~---------------------~~~F~Id-~~tG 162 (210)
T 3mvs_A 106 APTFHNQPYSVRIPENTPVGTPIFI-VNATDPDLGAGGSVLYSFQPP---------------------SPFFAID-SARG 162 (210)
T ss_dssp CCEECSCSEEEEEETTCCTTCEEEE-CCEECCSSGGGGCEEEEESSC---------------------CSSEEEC-TTTC
T ss_pred CCcCCCceEEEEEECCCCCCCEEEE-EEEEeCCCCCCceEEEEEeCC---------------------CCCEEEe-CCcE
Confidence 5678889999999999999999999 999999999999999999753 4689999 9999
Q ss_pred eEEEccCCCcCCCCEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.|++.++||||....|.|.|.|+
T Consensus 163 ~i~~~~~LD~E~~~~y~l~V~a~ 185 (210)
T 3mvs_A 163 IVTVIQELDYEVTQAYQLTVNAT 185 (210)
T ss_dssp EEEECSCCCTTTCSEEEEEEEEE
T ss_pred EEEECCcCCCcccceEEEEEEEE
Confidence 99999999999999999999984
No 6
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.71 E-value=4.4e-17 Score=115.26 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=75.9
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC---CCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG---VNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g---~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+||.++|+.+++ ++|+|+|.| .|++++|+|..+.+.. ....+|.|| +
T Consensus 105 ~P~F~~~~y~~~v~En~~~gt~v~~-v~A~D~D~~~~~~n~~i~Y~i~~~~~~~---------------~~~~~F~Id-~ 167 (213)
T 3qrb_A 105 RPEFTQEVFEGSVAEGAVPGTSVMK-VSATDADDDVNTYNAAIAYTIVSQDPEL---------------PHKNMFTVN-R 167 (213)
T ss_dssp CCEESCSEEEEEEETTCCTTCEEEE-CCEECCSCTTTSSTTCCEEEEEEEESCC---------------SCSCSEEEC-T
T ss_pred CCccCCCceEEEEECCCCCCcEEEE-EEEEeCCCCCCCcCcEEEEEEccCCCCC---------------CcCCeEEEE-C
Confidence 5678888999999999999999999 999999999 8999999998764311 125789999 9
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|.+. ++||||....|.|.|+|+
T Consensus 168 ~tG~i~~~~~~LD~E~~~~y~l~V~A~ 194 (213)
T 3qrb_A 168 DTGVISVLTSGLDRESYPTYTLVVQAA 194 (213)
T ss_dssp TTCEEEECSSCCCTTTCCEEEEEEEEE
T ss_pred CCcEEEEccCCCCCccCceEEEEEEEE
Confidence 99999997 799999999999999984
No 7
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.70 E-value=5.8e-17 Score=115.28 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=73.7
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCC---CCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~---g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+|+.++|+.+++ +.|+|+|. |.|++|+|+|..+ ..+|.|+ +
T Consensus 104 ~P~F~~~~y~~~v~E~~~~Gt~v~~-v~A~D~D~~~~G~n~~i~Y~i~~~---------------------~~~F~Id-~ 160 (215)
T 2a4e_A 104 PPEFLHEIYHANVPERSNVGTSVIQ-VTASDADDPTYGNSAKLVYSILEG---------------------QPYFSVE-A 160 (215)
T ss_dssp CCEESSSSEEEEEETTCCTTCEEEE-CCEECSSCTTTCSSSCCEEEEEES---------------------TTTEEEC-T
T ss_pred CCCccCCceEEEEECCCCCCCEEEE-EEEEECCCCCCCCceEEEEEEeCC---------------------CCcEEEe-C
Confidence 5678888999999999999999999 99999997 8899999999864 3579999 9
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++. ++||||....|.|.|+|+
T Consensus 161 ~tG~I~~~~~~LD~E~~~~y~l~V~A~ 187 (215)
T 2a4e_A 161 QTGIIRTALPNMDREAKEEYHVVIQAK 187 (215)
T ss_dssp TTCEEEECSSCCCSSSCSEEEEEEEEE
T ss_pred CccEEEEcccCCCcccCCEEEEEEEEE
Confidence 99999999 999999999999999984
No 8
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.70 E-value=6.7e-18 Score=122.19 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=73.2
Q ss_pred cCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEE
Q psy9047 11 KRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVT 90 (110)
Q Consensus 11 ~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~ 90 (110)
|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|++|+|+|..+. ..+|.|+ +.+|.|+
T Consensus 139 F~~~~y~~~v~En~~~Gt~v~~-v~A~D~D~g~n~~i~Y~i~~~~--------------------~~~F~Id-~~tG~i~ 196 (246)
T 2x2u_A 139 FPETRPSFRIRENRPPGTFHQF-RLLPVQFLCPQISVAYRLLEGE--------------------GLPFRSA-PDSLEVS 196 (246)
T ss_dssp SCSSCCCEEEEBTSCCCEEEEC-SCHHHHHHCTTSCEEEEEESCT--------------------TSSEECC-TTCCEEE
T ss_pred cCCCcEEEEEECCCCCCcEEEE-EEEEcCCCCCCcEEEEEEccCC--------------------CCCEEEE-CCcCEEE
Confidence 8899999999999999999999 9999999999999999998752 3689999 9999999
Q ss_pred EccCCCcCCCCEEEEEEEEC
Q psy9047 91 VNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 91 ~~~~LD~E~~~~y~l~V~A~ 110 (110)
+.++||||....|.|.|.|+
T Consensus 197 ~~~~LDrE~~~~y~l~V~A~ 216 (246)
T 2x2u_A 197 TRWALDREQREKYELVAVCT 216 (246)
T ss_dssp ESSCBCTTTCSEEEEEEEEE
T ss_pred eCCccCccccceEEEEEEEE
Confidence 99999999999999999973
No 9
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.70 E-value=1.6e-17 Score=120.23 Aligned_cols=87 Identities=34% Similarity=0.529 Sum_probs=75.0
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEe----eeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFK----NLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~----~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~ 83 (110)
+..|.+..|.+.|+||.++|+.+++ .+.|+|+|.|.||+|+|+|..+.... ....+|.||
T Consensus 124 ~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~---------------~~~~~F~Id- 187 (242)
T 4apx_B 124 SPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDP---------------TSNDTFEIP- 187 (242)
T ss_dssp CCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTST---------------THHHHEECS-
T ss_pred CCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCc---------------ccccceEEc-
Confidence 5678899999999999999999975 16799999999999999998765321 224689998
Q ss_pred CC-ceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 84 PH-QGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 84 ~~-tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.. +|.|++.++||||....|.|.|+|+
T Consensus 188 ~~~tG~i~~~~~LD~E~~~~y~l~V~A~ 215 (242)
T 4apx_B 188 LMLTGNVVLRKRLNYEDKTRYYVIIQAN 215 (242)
T ss_dssp STTTCCEEECSCCCTTTCCEEEEEEEEE
T ss_pred CCCceEEEECCcCChhhCCEEEEEEEEE
Confidence 65 8999999999999999999999984
No 10
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.70 E-value=8.3e-17 Score=113.47 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=72.6
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCC---CCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcC
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~---g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~ 83 (110)
.+..|.+..|.+.|+||.++|+.+++ ++|+|+|. |.|++++|+|..+ ..+|.|+
T Consensus 102 n~P~F~~~~y~~~v~E~~~~gt~v~~-v~A~D~D~~~~g~n~~i~Y~i~~~---------------------~~~F~Id- 158 (207)
T 3lnd_A 102 NEPIFTKDVYTATVPEMADVGTFVVQ-VTATDADDPTYGNSAKVVYSILQG---------------------QPYFSVE- 158 (207)
T ss_dssp CCCEESCSEEEEEEESSCCTTCEEEE-CCEECSSCTTSSSTTCCEEEEEES---------------------GGGEEEC-
T ss_pred CCCccCCCceEEEEeCCCCCCCEEEE-EEEEeCCCCCCCCCcEEEEEEcCC---------------------CCCEEEc-
Confidence 45678889999999999999999999 99999998 8899999999864 4589999
Q ss_pred CCceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 84 PHQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 84 ~~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
+.+|.|++. ++||||....|.|.|+|+
T Consensus 159 ~~tG~i~~~~~~lD~E~~~~y~l~V~A~ 186 (207)
T 3lnd_A 159 SETGIIKTALLNMDRENREQYQVVIQAK 186 (207)
T ss_dssp TTTCEEEECCSSCCC--CCEEEEEEEEE
T ss_pred CCCcEEEECcccCCcccCCEEEEEEEEE
Confidence 999999999 999999999999999984
No 11
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.69 E-value=7.1e-17 Score=114.64 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=76.1
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCC--CCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADA--GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~--g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~ 85 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+|. |.|++|+|+|..+.+.. +...+|.|+ +.
T Consensus 105 ~P~F~~~~y~~~v~En~~~gt~v~~-v~A~D~D~~~g~n~~i~Y~i~~~~~~~---------------~~~~~F~Id-~~ 167 (215)
T 2qvi_A 105 RPEFLHQVWNGSVPEGSKPGTYVMT-VTAIDADDPNALNGMLRYRILSQAPST---------------PSPNMFTIN-NE 167 (215)
T ss_dssp CCBCSSSEEEEEECSSCCTTCEEEE-CCCBCSSCTTSTTTCCCCEEEECSSCC---------------SSTTCEEEC-TT
T ss_pred CCcccCceeEEEEeCCCCCCCEEEE-EEEEeCCCCCCCCcEEEEEEecCCCCC---------------CcCCeEEEc-CC
Confidence 5678888999999999999999999 99999999 78999999999865310 125789999 99
Q ss_pred ceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 86 QGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 86 tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
+|.|.+. ++||||....|.|.|+|+
T Consensus 168 tG~i~~~~~~LD~E~~~~y~l~V~a~ 193 (215)
T 2qvi_A 168 TGDIITVAAGLDREKVQQYTLIIQAT 193 (215)
T ss_dssp TCEEEECSCCCCTTTCSEEEEEEECC
T ss_pred CcEEEEecCCCCcccCCeEEEEEEEE
Confidence 9999996 899999999999999985
No 12
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.68 E-value=8e-17 Score=102.14 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEEeCCCCC--CcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEcc
Q psy9047 16 VIVRVSDLTPV--GSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93 (110)
Q Consensus 16 y~~~v~En~~~--gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~ 93 (110)
+.++|+||.++ |+.+++ |+|+|+|. +|+|+|...... ....++|.|| +.+|.|.+.+
T Consensus 5 ~~~~V~En~~~~~g~~v~~-v~A~D~D~----~i~Ysi~~~~~~---------------~~~~~~F~Id-~~tG~i~~~~ 63 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGR-VVVSDRIP----GSKIKLYGKGVD---------------QEPKGIFKIN-ENSGEVSVTK 63 (99)
T ss_dssp CCEEEETTCCSCSSEEEEE-CBCSSCCT----TCEEEEESBTTT---------------BSSTTSEEEC-TTTCEEEECS
T ss_pred CcEEEeCCCCCCCCcEEEE-EEEECCCC----cEEEEEecCcCC---------------CCCCCEEEEE-CCceEEEECc
Confidence 46899999999 999999 99999997 699999753210 0235799999 9999999999
Q ss_pred CCCcCCCCEEEEEEEEC
Q psy9047 94 SLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 94 ~LD~E~~~~y~l~V~A~ 110 (110)
+||||....|.|.|.|+
T Consensus 64 ~LDrE~~~~y~l~V~A~ 80 (99)
T 3k6d_A 64 ALDREAIPSYQLQVETT 80 (99)
T ss_dssp CCCTTTCCEEEEEEEEE
T ss_pred CCCcccCceEEEEEEEE
Confidence 99999999999999984
No 13
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=109.89 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=75.4
Q ss_pred eecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCC
Q psy9047 6 KVSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85 (110)
Q Consensus 6 ~~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~ 85 (110)
+..+.|...+|.+.+.|+.++|+.+++ |. +|+|.|.|+.|+|+|....... +...+|.|| +.
T Consensus 7 r~~p~f~~~~~~v~e~e~~~~gt~v~~-v~-~D~D~g~n~~i~Y~i~~~~~~~---------------~~~~~F~Id-~~ 68 (123)
T 2yqg_A 7 GQKRAWITAPVALREGEDLSKKNPIAK-IH-SDLAEERGLKITYKYTGKGITE---------------PPFGIFVFN-KD 68 (123)
T ss_dssp CSCCSSCCCCEEEESSSCCCSSCCCBC-CC-CHHHHHHTCCCEEEEEEBTTTB---------------SSCSSEEEE-TT
T ss_pred ccCCccCCCCEEEEecCCCCCCCEEEE-EE-ECCCCCCCceEEEEEecCCCCC---------------CcCCCEEEe-CC
Confidence 445778889999999999999999999 99 6999999999999998753100 125789999 99
Q ss_pred ceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 86 QGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 86 tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
+|.|++.++||||....|.|.|.|+
T Consensus 69 tG~i~~~~~LDrE~~~~y~l~V~A~ 93 (123)
T 2yqg_A 69 TGELNVTSILDREETPFFLLTGYAL 93 (123)
T ss_dssp TTEEEECSCCBTTTBSEEEEEEEEE
T ss_pred cCEEEECcccCcccCceEEEEEEEE
Confidence 9999999999999999999999984
No 14
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.67 E-value=4.2e-16 Score=98.73 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=62.4
Q ss_pred EEEEeCCCCCC--cEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTPVG--STIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~~g--s~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.++|+||.++| +.+++ |.|+|+|. +|+|+|...... ....++|.|| +.+|.|.+.++
T Consensus 6 ~~~v~EN~~~g~~~~v~~-V~A~D~D~----~i~Ysi~~~~~~---------------~~~~~~F~Id-~~tG~i~~~~~ 64 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGK-VIRSEGTE----GAKFRLSGKGVD---------------QDPKGIFRIN-EISGDVSVTRP 64 (99)
T ss_dssp CEEEETTCCSSSCEEEEE-CEETTCCS----SEEEEEESBTTT---------------BSSTTSEEEC-TTTCEEEECSC
T ss_pred cEEEeCCCCCCCCeEEEE-EEEEcCCC----eEEEEEeCCCCC---------------CCcCCEEEEE-CCCcEEEECcc
Confidence 47899999997 88999 99999997 799999753210 0225789999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|+|+
T Consensus 65 LDrE~~~~y~l~v~A~ 80 (99)
T 3k6i_A 65 LDREAIANYELEVEVT 80 (99)
T ss_dssp CCTTTCCEEEEEEEEE
T ss_pred cCCccCCEEEEEEEEE
Confidence 9999999999999984
No 15
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.66 E-value=2.2e-16 Score=112.01 Aligned_cols=87 Identities=29% Similarity=0.398 Sum_probs=74.9
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCC--CCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADA--GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~--g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
....|.+..|.+.|+||.++|+.+++ +.|+|+|. |.|++++|+|..+.+.. ...++|.|| +
T Consensus 104 n~P~F~~~~y~~~v~E~~~~gt~v~~-v~A~D~D~~~g~n~~i~Y~i~~~~~~~---------------~~~~~F~Id-~ 166 (218)
T 3k5r_A 104 NRPIFREGPYIGHVMEGSPTGTTVMR-MTAFDADDPATDNALLRYNIRQQTPDK---------------PSPNMFYID-P 166 (218)
T ss_dssp CCCCCCSCSEEEEEETTCCTTCEEEE-CCCSCSSSSCGGGGCEEEEEEEEESCC---------------SCSCSEEEC-T
T ss_pred CCCcccCCceEEEEECCCCCCCEEEE-EEEEeCCCCCCCCcEEEEEEecCCCCC---------------CcCCEEEEE-C
Confidence 45678889999999999999999999 99999999 78999999998754310 113689999 9
Q ss_pred CceeEEEc---cCCCcCC--CCEEEEEEEEC
Q psy9047 85 HQGQVTVN---RSLDFEK--TQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~---~~LD~E~--~~~y~l~V~A~ 110 (110)
.+|.|.+. ++||||. ...|.|.|+|+
T Consensus 167 ~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~ 197 (218)
T 3k5r_A 167 EKGDIVTVVSPALLDRETLENPKYELIIEAQ 197 (218)
T ss_dssp TTCEEEECSCGGGCCGGGCSCSEEEEEEEEE
T ss_pred CccEEEEeccCCCCCccccCCCeEEEEEEEE
Confidence 99999987 7999999 66999999984
No 16
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.66 E-value=4.7e-16 Score=109.47 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=72.5
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCC---CCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDAD---AGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D---~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+| .|.|++++|+|..+ ..+|.|+
T Consensus 101 ~P~F~~~~y~~~v~E~~~~gt~v~~-v~A~D~D~~~~g~n~~i~Y~i~~~---------------------~~~F~I~-- 156 (203)
T 3ppe_A 101 APIFVQKIFNGSVPEMSRLGTSVTK-VTAEDADDPTVAGHATVTYQIIKG---------------------NEYFTVD-- 156 (203)
T ss_dssp CCEESCSEEEEEEETTCCTTCEEEE-CCEECCSCTTSSSTTCEEEEEEES---------------------TTTEEEC--
T ss_pred CCCccCCccEEEEeccCCCCcEEEE-EEEEcCCCcCCCCceEEEEEEeCC---------------------CCcEEEe--
Confidence 5678889999999999999999999 9999999 58899999999864 3589999
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++. ++||||....|.|.|+|+
T Consensus 157 ~tG~i~~~~~~LD~E~~~~y~l~V~A~ 183 (203)
T 3ppe_A 157 DSGVIFTARADLDRESQSAYEIIVKAK 183 (203)
T ss_dssp TTSEEEESCSCCCTTTCSEEEEEEEEE
T ss_pred CCeEEEECCcCCCcccCCEEEEEEEEE
Confidence 89999999 999999999999999984
No 17
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.66 E-value=3.6e-16 Score=99.25 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=62.8
Q ss_pred EEEEeCCCCC--CcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTPV--GSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~~--gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.+.|+||.++ |+.+++ |.|+|+|. .|+|+|...... ....++|.|| +.+|.|++.++
T Consensus 7 ~~~V~EN~~~~~g~~v~~-V~A~D~D~----~i~Ysi~~~~~~---------------~~~~~~F~Id-~~tG~i~~~~~ 65 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGK-VVDSDRPE----GSKFRLTGKGVD---------------QDPKGTFRIN-ENTGSVSVTRT 65 (100)
T ss_dssp CEEEETTCCSSSCEEEEE-CEETTCCT----TCEEEEEEBTTT---------------BSSTTSEEEC-TTTCEEEECSC
T ss_pred cEEEeCCCCCCCCcEEEE-EEEEcCCC----CEEEEEeCCCCC---------------CCcCCEEEEE-CCCCEEEECcc
Confidence 5799999998 899999 99999997 599999753210 0225789999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|+|+
T Consensus 66 LDrE~~~~y~l~V~A~ 81 (100)
T 3k6f_A 66 LDRETIATYQLYVETT 81 (100)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred cCCcCCCEEEEEEEEE
Confidence 9999999999999984
No 18
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.64 E-value=4.1e-16 Score=100.42 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred cEEEEEeCCCCCCcE--EEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEc
Q psy9047 15 PVIVRVSDLTPVGST--IFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVN 92 (110)
Q Consensus 15 ~y~~~v~En~~~gs~--v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~ 92 (110)
.|.++|+||.++|+. +++ + |.|.|.|+.|+|+|...... .....+|.|| +.+|.|++.
T Consensus 6 ~~~~~v~En~~~gt~~~v~~-v---d~D~g~n~~i~Y~i~~~~~~---------------~~~~~~F~Id-~~tG~i~~~ 65 (110)
T 1ncg_A 6 IPPINLPENSRGPFPQELVR-I---RSGRDKNLSLRYSVTGPGAD---------------QPPTGIFIIN-PISGQLSVT 65 (110)
T ss_dssp CCCEEECSSCCCCSSEEEEE-C---CCGGGGGSCCEEEEESBTTT---------------BSSTTSEEEC-TTTCEEEEC
T ss_pred eeeEEEeCCCCCCCcEEEEE-E---eCCCCCCCEEEEEEeCCCCC---------------CCcCCEEEEE-CCCCEEEEC
Confidence 578999999999995 444 4 78888999999999864210 0225789999 999999999
Q ss_pred cCCCcCCCCEEEEEEEEC
Q psy9047 93 RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 93 ~~LD~E~~~~y~l~V~A~ 110 (110)
++||||....|.|.|.|+
T Consensus 66 ~~LDrE~~~~y~l~V~A~ 83 (110)
T 1ncg_A 66 KPLDRELIARFHLRAHAV 83 (110)
T ss_dssp SCCCTTTCCEEEEEEEEE
T ss_pred CcCCcccCCeEEEEEEEE
Confidence 999999999999999984
No 19
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=99.62 E-value=6.6e-16 Score=115.57 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=72.3
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC---
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP--- 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~--- 84 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|++++|+|..+.. .++|.|+ .
T Consensus 212 ~P~F~~~~y~~~v~En~~~gt~v~~-v~A~D~D~g~n~~i~Y~i~~g~~-------------------~~~F~I~-~d~~ 270 (322)
T 2a62_A 212 PPKFAQSLYHFSVPEDVVLGTAIGR-VKANDQDIGENAQSSYDIIDGDG-------------------TALFEIT-SDAQ 270 (322)
T ss_dssp CCCCSCSEEEEEECSCCSSCCEEEE-EECCCSSCGGGTCCEEEEC---C-------------------CSSBCCB-CCTT
T ss_pred CCeecCCCceeEeECCCCCCcEEEE-EEEEeCCCCCCceEEEEEECCCC-------------------CCcEEEe-ccCC
Confidence 5578888999999999999999999 99999999999999999987543 5689998 5
Q ss_pred -CceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 85 -HQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 -~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++.++||||....|.|.|+|+
T Consensus 271 ~~tG~i~~~~~LD~E~~~~y~l~V~A~ 297 (322)
T 2a62_A 271 AQDGVIRLRKPLDFETKKSYTLKVEAA 297 (322)
T ss_dssp TSEEEEEBCSCCCCSSCCEEEEEEEEE
T ss_pred CceEEEEECCcCCcccCCeEEEEEEEE
Confidence 48999999999999999999999984
No 20
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.61 E-value=1e-15 Score=97.96 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=61.7
Q ss_pred EEEEeCCCC--CCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTP--VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~--~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.+.|+||.+ .|..+++ +.| | .|.|++|+|+|....... ...++|.|| +.+|.|++.++
T Consensus 10 ~~~V~En~~~~~~~~v~~-v~A-d--~g~N~~i~Ysi~~~~~~~---------------~~~~~F~Id-~~tG~I~~~~~ 69 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQ-IKS-N--KDKEGKVFYSITGQGADT---------------PPVGVFIIE-RETGWLKVTEP 69 (105)
T ss_dssp CCCEESSCCSSSSEEEEE-CEE-G--GGGSSCCEEEEEEBTTTB---------------SSTTSEEEC-TTTCEEEECSC
T ss_pred CEEEeCCCCCCCCcEEEE-EEC-C--CCCCCeEEEEEeCCCCCC---------------CccCEEEEe-CCCCEEEECcc
Confidence 568999999 5779999 999 3 367999999998753210 124689999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|+|+
T Consensus 70 LDrE~~~~y~l~V~A~ 85 (105)
T 2omz_B 70 LDRERIATYTLFSHAV 85 (105)
T ss_dssp CCTTTCCEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEE
Confidence 9999999999999984
No 21
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=99.60 E-value=3.9e-15 Score=110.63 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=72.2
Q ss_pred ecCccCCCc--EEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 7 VSNRKRTIP--VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 7 ~~~~~~~~~--y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
.+..|.+.. |.+.|+||.++|+.+++ +.|+|+|.|.| ++|+|..+.. .++|.|+ +
T Consensus 102 n~P~F~~~~~~y~~~v~En~~~gt~v~~-v~A~D~D~g~n--i~Y~i~~~~~-------------------~~~F~Id-~ 158 (316)
T 3ubf_A 102 EPPYFINRPLPMQAVVQLNAPPNTPVFT-LQARDPDTDHN--IHYFIVRDRT-------------------GGRFEVD-E 158 (316)
T ss_dssp CCCEECCSSSSEEEEECTTCCTTCEEEE-CCEECSSTTCC--EEEEEEEEES-------------------SSCEEEC-T
T ss_pred CCCccCCCCCCEEEEEeCCCCCCCEEEE-EEEECCCCCCc--eEEEEEeCCC-------------------CCEEEEE-C
Confidence 356677766 89999999999999999 99999999988 9999986432 5789999 9
Q ss_pred CceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++.++||||....|.|.|+|+
T Consensus 159 ~tG~i~~~~~lD~e~~~~y~l~V~A~ 184 (316)
T 3ubf_A 159 RSGVVRTRGTDLFQLDMEYVLYVKAE 184 (316)
T ss_dssp TTCEEEECSSCCCCTTCEEEEEEEEE
T ss_pred CccEEEECCcCCcccCcEEEEEEEEE
Confidence 99999999999999999999999984
No 22
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=99.59 E-value=2.3e-15 Score=112.59 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=73.4
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCC---CCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~---g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+|. |.|++++|+|..+ ..+|.|+ +
T Consensus 103 ~P~F~~~~y~~~v~E~~~~gt~v~~-v~A~D~D~~~~G~n~~i~Y~i~~~---------------------~~~F~Id-~ 159 (322)
T 2a62_A 103 APEFLNGPYHATVPEMSILGTSVTN-VTATDADDPVYGNSAKLVYSILEG---------------------QPYFSIE-P 159 (322)
T ss_dssp CBCCSSSEEEEEECSSCCTTCBCCC-CCCCBCSCSSSTTSSCEEEEEEEC---------------------TTTEEEC-T
T ss_pred CCccCCCceEEEEeCCCCCCCEEEE-EEEEeCCCCCCCccEEEEEEEccC---------------------CCCEEEe-c
Confidence 5678888999999999999999999 99999996 8899999999864 3579999 9
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++. +.||||....|.|.|+|+
T Consensus 160 ~tG~i~~~~~~LD~E~~~~y~l~V~a~ 186 (322)
T 2a62_A 160 ETAIIKTALPNMDREAKEEYLVVIQAK 186 (322)
T ss_dssp TTCCEEECSSCCCGGGCSEEEEEEEEE
T ss_pred CCCEEEecccCCCcccCCeEEEEEEEE
Confidence 99999998 899999999999999984
No 23
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=99.58 E-value=9.3e-15 Score=108.60 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=71.1
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEcc-CCCCCCCccCCcccceeeecCCcceEEEcCCCc
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVP-SQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~t 86 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+| |+.|+|+|.. +. ..++|.|| +.+
T Consensus 211 ~P~F~~~~y~~~v~En~~~gt~v~~-v~A~D~D---n~~i~Y~i~~~~~-------------------~~~~F~Id-~~t 266 (316)
T 3ubf_A 211 APQFYMPSYEAEIPENQKKDSDIIS-IKAKSFA---DREIRYTLKAQGQ-------------------GAGTFNIG-PTS 266 (316)
T ss_dssp CCEESSSSEEEEEETTCCTTCEEEE-CCEECTT---CCCEEEEEEEESS-------------------CTTTEEEC-TTT
T ss_pred CCEEcCCCceEEEeCCCCCCCEEEE-EEEEeCC---CCEEEEEEEcCCC-------------------CCCeEEEE-CCe
Confidence 5678899999999999999999999 9999998 7889999973 32 25789999 999
Q ss_pred eeEEEccCCCcCCC---CEEEEEEEEC
Q psy9047 87 GQVTVNRSLDFEKT---QRYLVTIVAS 110 (110)
Q Consensus 87 G~i~~~~~LD~E~~---~~y~l~V~A~ 110 (110)
|.|++.++||||.. ..|.|.|.|+
T Consensus 267 G~i~~~~~LD~E~~~~~~~y~l~V~A~ 293 (316)
T 3ubf_A 267 GIVKLAKELDFEDLRQPHVYSLIVTAT 293 (316)
T ss_dssp CEEEECSCCCSSCTTSCSEEEEEEEEE
T ss_pred EEEEECCcCCccccCCCceEEEEEEEE
Confidence 99999999999998 7999999984
No 24
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=99.56 E-value=7.8e-15 Score=116.35 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=75.7
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC--CCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG--VNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g--~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
.+..|.+..|.+.|+||.++|+.+++ +.|+|+|.| .|++++|+|..+.+.. ....+|.|+ +
T Consensus 104 n~P~F~~~~y~~~V~En~~~Gt~v~~-v~A~D~D~g~~~n~~v~Ysi~~~~~~~---------------~~~~~F~Id-~ 166 (559)
T 3q2w_A 104 NRPEFLHQVWNGSVPEGSKPGTYVMT-VTAIDADDPNALNGMLRYRILSQAPST---------------PSPNMFTIN-N 166 (559)
T ss_dssp CCCEESCSEEEEEEETTCCTTCEEEE-CCEECSSCTTSGGGCCEEEEEEEESCC---------------SCTTCEEEC-T
T ss_pred CCCccCCCeeEEEEeCCCCCCcEEEE-EEEEcCCCCCCCceEEEEEEecCCCCC---------------CCcceEEEe-C
Confidence 35678889999999999999999999 999999997 6999999998754311 113689999 9
Q ss_pred CceeEEEcc-CCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVNR-SLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~~-~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|.+.+ +||||....|.|.|+|+
T Consensus 167 ~tG~i~~~~~~LD~E~~~~y~l~V~A~ 193 (559)
T 3q2w_A 167 ETGDIITVAAGLDREKVQQYTLIIQAT 193 (559)
T ss_dssp TTCEEEECCSCCCTTTCCEEEEEEEEE
T ss_pred CceEEEEEeccCCcccCCEEEEEEEEE
Confidence 999999987 99999999999999984
No 25
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=99.56 E-value=2.6e-15 Score=105.97 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=71.0
Q ss_pred eecCccCCCcEE--EEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcC
Q psy9047 6 KVSNRKRTIPVI--VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83 (110)
Q Consensus 6 ~~~~~~~~~~y~--~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~ 83 (110)
..+..|.+..|. +.|+||.++|+.+++ +.|+|+|. +.+.|+|..+.. .++|.|+
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~-v~A~D~D~---~~~~y~i~~~~~-------------------~~~F~Id- 58 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQ-LLARDMDN---DPLVFGVSGEEA-------------------SRFFAVE- 58 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEE-CCEECTTC---CCCEEEEESHHH-------------------HHHEEEC-
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEE-EEEEeCCC---CcEEEEEeCCCC-------------------CCcEEEe-
Confidence 456788899996 799999999999999 99999994 568999975422 5789999
Q ss_pred CCceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 84 PHQGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 84 ~~tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
+.+|.|++.++||||....|.|.|.|+
T Consensus 59 ~~tG~i~~~~~LD~E~~~~y~l~v~a~ 85 (210)
T 3mvs_A 59 PDTGVVWLRQPLDRETKSEFTVEFSVS 85 (210)
T ss_dssp TTTCEEEESSCCCTTTCCEEEEEEEEE
T ss_pred CCCCEEEECCccCCcccceEEEEEEEE
Confidence 999999999999999999999999874
No 26
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=99.55 E-value=1.5e-14 Score=114.50 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=76.1
Q ss_pred ecCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC---CCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcC
Q psy9047 7 VSNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG---VNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83 (110)
Q Consensus 7 ~~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g---~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~ 83 (110)
.+..|.+..|.+.|+||.++|+.+++ +.|+|+|.| .|+.++|+|..+.+.. ....+|.||
T Consensus 110 n~P~F~~~~y~~~V~En~~~gt~v~~-v~A~D~D~g~~~~n~~v~Ysi~~~~~~~---------------~~~~~F~Id- 172 (546)
T 1l3w_A 110 NRPKFTQDVFRGSVREGVQPGTQVMA-VSATDEDDNIDSLNGVLSYSILKQDPEE---------------PIPNLFTIN- 172 (546)
T ss_dssp CCCEESSSCEEEEEETTCCSSEEEEE-CCEECCSCCSSSSTTCCEEEEEEESSCC---------------SCSCSEEEC-
T ss_pred CcCEecCceeEEEEECCCCCCCEEEE-EEEEcCCCCCCCCCCEEEEEEeCCCCCc---------------ccCCcEEEe-
Confidence 35688899999999999999999999 999999998 7999999998765310 125799999
Q ss_pred CCceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 84 PHQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 84 ~~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
+.+|.|.+. ++||||....|.|.|+|+
T Consensus 173 ~~tG~i~~~~~~LD~E~~~~y~l~V~A~ 200 (546)
T 1l3w_A 173 RETGVISLIGTGLDREKFPEYTLTVQAT 200 (546)
T ss_dssp TTTCEEEECSCCCCTTTCCEEEEEEEEE
T ss_pred CCCceEEEeccCCCcccCceEEEEEEEE
Confidence 999999985 799999999999999984
No 27
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=114.96 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=76.0
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC---CCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG---VNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g---~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+|+.++|+.+++ +.|+|+|.| .|+.++|+|..+.+.. ....+|.|+ +
T Consensus 105 ~P~F~~~~y~~~V~E~~~~Gt~v~~-v~A~D~D~g~~~~N~~i~Ysi~~~~~~~---------------~~~~~F~id-~ 167 (550)
T 3q2v_A 105 RPEFTQEVFEGSVAEGAVPGTSVMK-VSATDADDDVNTYNAAIAYTIVSQDPEL---------------PHKNMFTVN-R 167 (550)
T ss_dssp CCCBSCSEEEEEEETTCCTTCEEEE-CCBCCCSCTTTCGGGCCEEEEEEEESCC---------------SSSCSEEEC-T
T ss_pred CCccCCCceEEEEeCCCCCCCEEEE-EEEEeCCCCCCCcceEEEEEEecCCCCC---------------CcCCceEEc-C
Confidence 6788899999999999999999999 999999998 7999999998764321 125789999 9
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|.+. ++||||....|.|.|+|+
T Consensus 168 ~tG~i~~~~~~LDrE~~~~y~l~V~A~ 194 (550)
T 3q2v_A 168 DTGVISVLTSGLDRESYPTYTLVVQAA 194 (550)
T ss_dssp TTCEEEECSSCCCTTTCSEEEEEEEEE
T ss_pred CCeEEEEccCCCCcccCcEEEEEEEEE
Confidence 99999985 799999999999999984
No 28
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=99.54 E-value=1.4e-15 Score=110.02 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=67.2
Q ss_pred ccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCC--CceEE------EEEccCCCCCCCccCCcccceeeecCCcceEEE
Q psy9047 10 RKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGV--NGLVE------YFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSI 81 (110)
Q Consensus 10 ~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~--n~~i~------Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I 81 (110)
.|.+..|.+.|+||.++|+.+++ ++|+|+|.|. +.+|. |++... ...+|.|
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~-v~A~D~D~g~~~~~~i~~~~~~~y~i~~~--------------------~~~~F~I 60 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLY-VHALRDAPEEVPSFRLGQHLYGTYRTRLH--------------------ENNWIRI 60 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEE-CCEECSSTTCCCCCEECSEEECGGGCEEE--------------------ECCSEEE
T ss_pred CccCCceEEEeeCCCCCCCEEEE-EEEEcCCCCCcceEEEeeccccceeccCC--------------------CCCEEEE
Confidence 58899999999999999999999 9999999864 44454 444332 1478999
Q ss_pred cCCCceeEEEccCCCcCCCCEE------------EEEEEEC
Q psy9047 82 NLPHQGQVTVNRSLDFEKTQRY------------LVTIVAS 110 (110)
Q Consensus 82 d~~~tG~i~~~~~LD~E~~~~y------------~l~V~A~ 110 (110)
| +.+|+|++.++||||....| .|.|.|+
T Consensus 61 d-~~tG~i~~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~ 100 (246)
T 2x2u_A 61 Q-EDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLS 100 (246)
T ss_dssp C-TTTCEEEESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC
T ss_pred C-CCcEEEEECCcCChhHhhhhccccCCCcccceEEEEEEE
Confidence 9 99999999999999999999 9999884
No 29
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=99.52 E-value=6.5e-14 Score=111.07 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=72.9
Q ss_pred CccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCcee
Q psy9047 9 NRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88 (110)
Q Consensus 9 ~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~ 88 (110)
..|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|+.|+|+|.... .++|.|| +.+|.
T Consensus 336 P~f~~~~~~~~v~En~~~g~~v~~-v~A~D~D~g~n~~i~Ysi~~~~--------------------~~~f~Id-~~tG~ 393 (559)
T 3q2w_A 336 PYFAPNPKIIRQEEGLHAGTMLTT-LTAQDPDRYMQQNIRYTKLSDP--------------------ANWLKID-PVNGQ 393 (559)
T ss_dssp CEESSSEEEEEEESCCCTTCEEEE-CCEECSCSSSCCCEEEEEEECT--------------------TCCEEEC-TTTCE
T ss_pred CcccccceEEEEeCCCCCCCEEEE-EEEECCCCCCCCceEEEEccCC--------------------ccceEec-CCceE
Confidence 467778899999999999999999 9999999999999999998642 5789999 99999
Q ss_pred EEEccCCCcCCC----CEEEEEEEEC
Q psy9047 89 VTVNRSLDFEKT----QRYLVTIVAS 110 (110)
Q Consensus 89 i~~~~~LD~E~~----~~y~l~V~A~ 110 (110)
|.+.+.||||.. ..|.|.|.|+
T Consensus 394 i~~~~~lDrE~~~~~~~~y~l~V~A~ 419 (559)
T 3q2w_A 394 ITTIAVLDRESPNVKNNIYNATFLAS 419 (559)
T ss_dssp EEESSCCCSSSTTSCSSEEEEEEEEE
T ss_pred EEEccccCcccccccCCEEEEEEEEE
Confidence 999999999976 8999999984
No 30
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=99.51 E-value=5.1e-14 Score=111.49 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=73.7
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
...|.+..|.+.|+|+.++|+.+++ +.|+|+|.|.|+.|+|+|.... ..+|.|+ +.+|
T Consensus 329 ~P~f~~~~~~~~v~E~~~~gt~v~~-v~A~D~D~g~n~~i~y~i~~~~--------------------~~~f~id-~~tG 386 (550)
T 3q2v_A 329 APIFMPAERRVEVPEDFGVGQEITS-YTAREPDTFMDQKITYRIWRDT--------------------ANWLEIN-PETG 386 (550)
T ss_dssp CCEESSSSCEEEEETTCCSSCEEEE-CCEECCCCSTTCCCEEEEEECT--------------------TCCEEEC-TTTC
T ss_pred CCeEcCcceEEEEecCCCCCCEEEE-EeCCCCCCCCCCCEEEEEecCC--------------------CCcEEEe-CCCc
Confidence 3567788899999999999999999 9999999999999999996532 5789999 9999
Q ss_pred eEEEccCCCcCCC-----CEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKT-----QRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~-----~~y~l~V~A~ 110 (110)
.|++.+.||||.. ..|.|.|.|+
T Consensus 387 ~i~~~~~lDrE~~~~~~~~~y~l~V~A~ 414 (550)
T 3q2v_A 387 AIFTRAEMDREDAEHVKNSTYVALIIAT 414 (550)
T ss_dssp EEEECSCCCTTCTTTCCSSEEEEEEEEE
T ss_pred EEEECCccCcccccccCCCEEEEEEEEE
Confidence 9999999999998 8999999984
No 31
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=2.6e-15 Score=98.91 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=64.1
Q ss_pred CCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceE---EEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCcee
Q psy9047 12 RTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLV---EYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQ 88 (110)
Q Consensus 12 ~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i---~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~ 88 (110)
....|.+.|+|+.++|+.+++ + |+|+|.+. +.+ +|+|.++.. ..+|.|| +.+|.
T Consensus 9 ~~~~~~~~V~E~~~~Gt~V~~-v-a~D~d~~~-~~i~~~~Y~i~~~~~-------------------~~~F~Id-~~tG~ 65 (125)
T 1wyj_A 9 GSATITYSVLEETDRGSLVGN-L-AKDLGLSL-RELITRGAQILSKGN-------------------KQLLQLE-QKSGN 65 (125)
T ss_dssp CCCCCCEEECSSCCTTCEEEE-S-TTTTTCCH-HHHHHTTCEEECSSS-------------------SCSEEEC-SSSSE
T ss_pred cCceEEEEEECCCCCCCEEEE-E-EecCCCCC-CceeeEEEEEecCCC-------------------CCeEEEE-CCccE
Confidence 345677899999999999999 9 99999874 344 899987533 5799999 99999
Q ss_pred EEEccCCCcCCC----CEEEEEEEE
Q psy9047 89 VTVNRSLDFEKT----QRYLVTIVA 109 (110)
Q Consensus 89 i~~~~~LD~E~~----~~y~l~V~A 109 (110)
|++.++||||.. ..|.|.|+|
T Consensus 66 i~~~~~LDRE~~c~~~~~y~l~v~a 90 (125)
T 1wyj_A 66 LLLKEKLDREELCGSTNPCILHFQV 90 (125)
T ss_dssp EEESSCCCSTTTCTTCSSCCBCCEE
T ss_pred EEECccccchhhcccCCcEEEEEEE
Confidence 999999999999 899988876
No 32
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=99.50 E-value=6e-14 Score=116.53 Aligned_cols=86 Identities=23% Similarity=0.330 Sum_probs=75.7
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCC---CCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCC
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAG---VNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g---~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~ 84 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+|.| .|+.++|+|..+.+.. +...+|.|| +
T Consensus 260 ~P~F~~~~y~~~V~En~~~Gt~V~~-v~AtD~D~g~~~~N~~v~Ysi~~~~~~~---------------~~~~~F~Id-~ 322 (880)
T 1q55_A 260 RPKFTQDVFRGSVREGVQPGTQVMA-VSATDEDDNIDSLNGVLSYSILKQDPEE---------------PIPNLFTIN-R 322 (880)
T ss_dssp CCEESSSCEEEEEETTCCSSEEEEE-CCEECCSCCSSSSTTCCEEEEEEESSCC---------------SCSCSEEEC-T
T ss_pred CCCccCCcEEEEEeCCCCCCceeEE-EEEEcCCCCCCCcCcEEEEEEcCCCCCc---------------ccCCeEEEc-c
Confidence 5678889999999999999999999 999999998 7999999998765310 125799999 9
Q ss_pred CceeEEEc-cCCCcCCCCEEEEEEEEC
Q psy9047 85 HQGQVTVN-RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 85 ~tG~i~~~-~~LD~E~~~~y~l~V~A~ 110 (110)
.+|.|++. ++||||....|.|.|+|+
T Consensus 323 ~tG~I~~~~~~LDrE~~~~y~l~V~A~ 349 (880)
T 1q55_A 323 ETGVISLIGTGLDREKFPEYTLTVQAT 349 (880)
T ss_dssp TTCEEEECSCCCCTTTCCEEEEEEEEE
T ss_pred CCccEEEecccCCHHHcceeEEEEEEE
Confidence 99999986 799999999999999984
No 33
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.50 E-value=7.5e-14 Score=99.12 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=63.3
Q ss_pred cEEEEEeCCC--CCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEc
Q psy9047 15 PVIVRVSDLT--PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVN 92 (110)
Q Consensus 15 ~y~~~v~En~--~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~ 92 (110)
-|.+.|+||. |.|+.+.+ + |+|+|.| |+.|+|+|..... ..+|.|| +.+|.|.+.
T Consensus 5 ~~~~~v~En~~~p~~~~v~~-v-a~D~D~g-n~~i~Y~l~~~~~-------------------~~~F~Id-~~tG~i~~~ 61 (215)
T 2a4e_A 5 WNQFFVIEEYTGPDPVLVGR-L-HSDIDSG-DGNIKYILSGEGA-------------------GTIFVID-DKSGNIHAT 61 (215)
T ss_dssp CCEEEEETTCCSSSCEEEEE-C-CCTTCCS-SSCEEEEEEETTB-------------------TTTEEEC-TTTCEEEEC
T ss_pred EeeEEEeccCCCCCCEEEEE-E-EECCCCC-CCeEEEEEECCCC-------------------CCeEEEE-CCceEEEEC
Confidence 3688999995 57888887 7 8999998 8999999986432 3689999 999999999
Q ss_pred cCCCcCCCCEEEEEEEEC
Q psy9047 93 RSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 93 ~~LD~E~~~~y~l~V~A~ 110 (110)
++||||....|.|.|.|+
T Consensus 62 ~~LDrE~~~~y~l~v~a~ 79 (215)
T 2a4e_A 62 KTLDREERAQYTLMAQAV 79 (215)
T ss_dssp SCCCTTTCSEEEEEEEEE
T ss_pred CccCCccCCEEEEEEEEE
Confidence 999999999999999984
No 34
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.48 E-value=1.1e-13 Score=98.17 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccCCC
Q psy9047 17 IVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLD 96 (110)
Q Consensus 17 ~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~LD 96 (110)
.++|+||.+ |+.+.+ +.|.|.|.+.|+.|+|+|..+.... +...+|.|| +.+|.|.+.++||
T Consensus 6 ~~~V~En~~-g~~~~~-v~~~~~D~~~n~~v~Ysi~~~~~~~---------------~~~~~F~Id-~~tG~i~~~~~LD 67 (215)
T 2qvi_A 6 PINLPENSR-GPFPQE-LVRIRSDRDKNLSLRYSVTGPGADQ---------------PPTGIFIIN-PISGQLSVTKPLD 67 (215)
T ss_dssp CEEEESSCC-CCSSEE-EEECCCGGGGTSCEEEEEESTTSSS---------------TTCSSEEEC-TTTCEEEECSCCC
T ss_pred cEEEcCCCC-CCCCEE-EEEEeCCCCCCceEEEEEECCCCCC---------------CCCCcEEEe-CCccEEEECcccC
Confidence 578999999 888888 9999999999999999998753210 125789999 9999999999999
Q ss_pred cCCCCEEEEEEEEC
Q psy9047 97 FEKTQRYLVTIVAS 110 (110)
Q Consensus 97 ~E~~~~y~l~V~A~ 110 (110)
||....|.|.|+|+
T Consensus 68 rE~~~~y~l~v~a~ 81 (215)
T 2qvi_A 68 RELIARFHLRAHAV 81 (215)
T ss_dssp TTTCSEEEEEEEEE
T ss_pred cccCCeEEEEEEEE
Confidence 99999999999984
No 35
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=99.47 E-value=1.7e-13 Score=105.24 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=70.6
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
+..|.+..|.+.|+||.++|+.+++ +.|+|+| |+.++|+|.... ...++|.|+ +.+|
T Consensus 216 ~P~F~~~~y~~~v~En~~~gt~v~~-v~A~D~d---n~~i~Ysi~~~~------------------~~~~~F~I~-~~tG 272 (419)
T 3ubh_A 216 APQFYMPSYEAEIPENQKKDSDIIS-IKAKSFA---DREIRYTLKAQG------------------QGAGTFNIG-PTSG 272 (419)
T ss_dssp CCEESSSCEEEEEETTCCTTCEEEE-CCEECSS---CCCCEEEEEESS------------------SCCSSEEEC-TTTC
T ss_pred CCceecCeeEEEecCCCCCCcEEEE-EEEecCC---CCceEEEEecCC------------------CCCCcEEEE-CCCC
Confidence 5778899999999999999999999 9999987 888999997422 125789999 9999
Q ss_pred eEEEccCCCcCCCC---EEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKTQ---RYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~~---~y~l~V~A~ 110 (110)
.|++.++||||... .|.|.|.|+
T Consensus 273 ~i~~~~~LD~E~~~~~~~y~l~V~a~ 298 (419)
T 3ubh_A 273 IVKLAKELDFEDLRQPHVYSLIVTAT 298 (419)
T ss_dssp EEEECSCCCTTCTTSCSEEEEEEEEE
T ss_pred EEEECcccCccccccccEEEEEEEEE
Confidence 99999999999875 799999984
No 36
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=99.47 E-value=4.3e-14 Score=111.91 Aligned_cols=81 Identities=27% Similarity=0.295 Sum_probs=73.2
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
...|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|++++|+|.... .++|.|+ +.+|
T Consensus 335 ~P~f~~~~y~~~V~En~~~g~~v~~-v~A~D~D~g~n~~i~ysi~~~~--------------------~~~F~Id-~~tG 392 (546)
T 1l3w_A 335 APFFVPAVSRVDVSEDLSRGEKIIS-LVAQDPDKQQIQKLSYFIGNDP--------------------ARWLTVN-KDNG 392 (546)
T ss_dssp CCEESSCEECCCBCTTCCSSEEEEE-CCEECCCTTCCCCEEEEECCCS--------------------SCCCEEE-TTTT
T ss_pred CCcEecceEEEEEeCCCCCCCEEEE-EEEECCCCCCCceEEEEECCCC--------------------CCcEEEe-CCcE
Confidence 3567778899999999999999999 9999999999999999998632 4789999 9999
Q ss_pred eEEEccCCCcCCC----CEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKT----QRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~----~~y~l~V~A~ 110 (110)
.|++.+.||||.. ..|.|.|.|+
T Consensus 393 ~i~~~~~lD~E~~~~~~~~y~l~V~a~ 419 (546)
T 1l3w_A 393 IVTGNGNLDRESEYVKNNTYTVIMLVT 419 (546)
T ss_dssp EEEECSCCCTTSSSCCSSCCEEEEEEE
T ss_pred EEEECCccCCccccCCCCEEEEEEEEE
Confidence 9999999999997 8999999984
No 37
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=99.45 E-value=3.4e-13 Score=103.61 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=71.1
Q ss_pred cCccCCCc--EEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCC
Q psy9047 8 SNRKRTIP--VIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPH 85 (110)
Q Consensus 8 ~~~~~~~~--y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~ 85 (110)
+..|.+.+ |.+.|+|+.++|+.+++ +.|+|+|.|.| ++|+|..+.. ..+|.|+ +.
T Consensus 108 ~P~F~~~~~~~~~~v~E~~~~gt~v~~-v~A~D~D~g~n--~~y~i~~~~~-------------------~~~F~I~-~~ 164 (419)
T 3ubh_A 108 PPYFINRPLPMQAVVQLNAPPNTPVFT-LQARDPDTDHN--IHYFIVRDRT-------------------GGRFEVD-ER 164 (419)
T ss_dssp CCEECCSSSSCEEEECTTCCTTCEEEE-CCEECSSTTCC--EEEEEEEESS-------------------SSCEEEC-TT
T ss_pred CCcccCCCCcEEEEEeCCCCCCCEEEE-EEEECCCCCce--eEEEEEeCCC-------------------CCeEEEe-CC
Confidence 55676666 78999999999999999 99999999988 8999986533 5789999 99
Q ss_pred ceeEEEccCCCcCCCCEEEEEEEEC
Q psy9047 86 QGQVTVNRSLDFEKTQRYLVTIVAS 110 (110)
Q Consensus 86 tG~i~~~~~LD~E~~~~y~l~V~A~ 110 (110)
+|.|++.+.||+|....|.|.|+|+
T Consensus 165 tG~i~~~~~ld~e~~~~y~l~V~A~ 189 (419)
T 3ubh_A 165 SGVVRTRGTDLFQLDMEYVLYVKAE 189 (419)
T ss_dssp TCEEEECSSSCCCBTCEEEEEEEEE
T ss_pred ceEEEEecccccccccEEEEEEEEE
Confidence 9999999999999999999999984
No 38
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.41 E-value=1e-13 Score=97.51 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=57.6
Q ss_pred EEEEeCCCCCCc--EEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTPVGS--TIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~~gs--~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.++|+||.+++. .+.+ + |+|+|.| |+.|+|+|..+.. ..+|.|+ +.+|.|++.++
T Consensus 6 ~~~v~En~~~~~~~~v~~-~-a~D~D~g-~~~i~Y~l~~~~~-------------------~~~F~Id-~~tG~i~~~~~ 62 (207)
T 3lnd_A 6 QFFLLEEYTGSDYQYVGK-L-HSDQDRG-DGSLKYILSGDGA-------------------GDLFIIN-ENTGDIQATKR 62 (207)
T ss_dssp CEEEESCBCSSSCEEEEE-C-CCTTCCS-STTBCCCCCSSSB-------------------TTTEEEC-TTTCEEEECSC
T ss_pred ccEEEeecCCCCCEEEEE-E-EeCCCCC-CceEEEEEECCCC-------------------CCeEEEE-CCceEEEECCC
Confidence 468999999765 6666 7 9999999 7889999975432 4689999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|.|+
T Consensus 63 LDrE~~~~y~l~v~a~ 78 (207)
T 3lnd_A 63 LDREEKPVYILRAQAV 78 (207)
T ss_dssp CCGGGCCEEEC----C
T ss_pred cCcccCCEEEEEEEEE
Confidence 9999999999999884
No 39
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=99.41 E-value=2.1e-13 Score=113.31 Aligned_cols=81 Identities=27% Similarity=0.295 Sum_probs=73.3
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
...|.+..|.+.|+||.++|+.+++ +.|+|+|.|.|+.|+|+|.... .++|.|| +.+|
T Consensus 484 ~P~f~~~~y~~~V~En~~~Gt~V~~-v~A~D~D~g~n~~v~Ysi~~~~--------------------~~~F~Id-~~tG 541 (880)
T 1q55_A 484 APFFVPAVSRVDVSEDLSRGEKIIS-LVAQDPDKQQIQKLSYFIGNDP--------------------ARWLTVN-KDNG 541 (880)
T ss_dssp CCEESSCEECCCBCTTCCSSEEEEE-CCEECCCTTCCCCEEEEECCCS--------------------SCCCEEE-TTTT
T ss_pred CCEEecCceEEEEeCCCCCCCEEEE-EEEEeCCCCCCCcEEEEECCCC--------------------CCCEEEe-CCcc
Confidence 3567778899999999999999999 9999999999999999998632 5789999 9999
Q ss_pred eEEEccCCCcCCC----CEEEEEEEEC
Q psy9047 88 QVTVNRSLDFEKT----QRYLVTIVAS 110 (110)
Q Consensus 88 ~i~~~~~LD~E~~----~~y~l~V~A~ 110 (110)
.|++.+.||||.. ..|.+.|.|+
T Consensus 542 ~I~~~~~LDrE~~~~~~~~y~l~V~A~ 568 (880)
T 1q55_A 542 IVTGNGNLDRESEYVKNNTYTVIMLVT 568 (880)
T ss_dssp EEEECSCCCTTSSSCCSSCCEEEEEEE
T ss_pred EEEECCccCcccccCCCCEEEEEEEEE
Confidence 9999999999997 8999999984
No 40
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.39 E-value=9.5e-13 Score=92.85 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=62.5
Q ss_pred EEEEeCCCC--CCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTP--VGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~--~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.++|+||.+ .|..+++ +.| |+|. |++++|+|....... +..++|.|+ +.+|.|++.++
T Consensus 6 ~~~V~En~~~~~~~~v~~-v~a-D~d~--n~~v~Ysi~~~~~~~---------------~~~~~F~Id-~~tG~i~~~~~ 65 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQ-IKS-NRDK--ETKVFYSITGQGADK---------------PPVGVFIIE-RETGWLKVTQP 65 (213)
T ss_dssp EEEEETTCCSSSSEEEEE-CCC-GGGG--TSCEEEEEESBTTTB---------------SSTTSEEEC-TTTCEEEECSC
T ss_pred CEEEeCCCCCCCCcEEEE-EEE-CCCC--CceEEEEEEcCCCCC---------------CCCCeEEEE-CCCCEEEECCc
Confidence 789999999 5678999 999 7775 899999998753210 225699999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|.|+
T Consensus 66 LDrE~~~~y~l~v~a~ 81 (213)
T 3qrb_A 66 LDREAIAKYILYSHAV 81 (213)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred cCcccCceEEEEEEEE
Confidence 9999999999999983
No 41
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.38 E-value=3e-14 Score=90.81 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCCCCcEEEeeeEEeeCCCCCC--ceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEE
Q psy9047 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVN--GLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTV 91 (110)
Q Consensus 14 ~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n--~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~ 91 (110)
..|.++|+|+.++|+.+++ + |.|+|.+.+ +.+.|+|.++.+ ..+|.|| +.+|.|++
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~-v-a~D~~~~~~~~~~~~y~i~~~~~-------------------~~~F~Id-~~tG~i~~ 60 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGR-I-AQDLGLELTELVPRLFRVASKDR-------------------GDLLEVN-LQNGILFV 60 (103)
T ss_dssp CEEEEEEESSCCTTCBCCC-H-HHHHTCCHHHHTTTTBCCBCSSC-------------------SCSEEEE-TTTTEEEE
T ss_pred eeEEEEEECCCCCCCEEEE-E-EeccCCCCcccccEEEEEEeCCC-------------------ccEEEEE-CCeEEEEE
Confidence 4678899999999999999 9 999886532 468899986543 5799999 99999999
Q ss_pred ccCCCcCCCC------EEEEEEEE
Q psy9047 92 NRSLDFEKTQ------RYLVTIVA 109 (110)
Q Consensus 92 ~~~LD~E~~~------~y~l~V~A 109 (110)
.+.||||... .|.+.|.|
T Consensus 61 ~~~LDRE~~~~~~~~~~~~~~v~~ 84 (103)
T 1wuz_A 61 NSRIDREELCGRSAECSIHLEVIV 84 (103)
T ss_dssp CSCCSHHHHCSSSSSCEEEEEEEE
T ss_pred CCcCccccccCCCCcEEEEEEEEE
Confidence 9999999752 56666554
No 42
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.36 E-value=2.4e-12 Score=90.46 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=61.1
Q ss_pred EEEEeCCCCCC--cEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTPVG--STIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~~g--s~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.++|+||.+.| ..+++ +. +|+|.|.| +|+|..+.+ .++|.|+ +.+|.|++.++
T Consensus 6 ~~~V~En~~~~~~~~v~~-v~-~D~D~g~~---~Y~i~~~~~-------------------~~~F~Id-~~tG~i~~~~~ 60 (203)
T 3ppe_A 6 RMHIREEIDSPLPHHVGK-LT-SSVGNKNA---MYIIEGESA-------------------NTIFKVQ-GYDGDIYAFER 60 (203)
T ss_dssp EEEEETTCCSSSCEEEEE-CC-BCCCCTTE---EEEEEETTB-------------------TTTEEEE-TTTTEEEESSC
T ss_pred cEEEEccCCCCCCEEEEE-EE-ecCCCCCc---EEEEecCCC-------------------CCeEEEE-CCcCEEEECcc
Confidence 68999999998 77777 77 99999877 999986543 4689999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|.|+
T Consensus 61 LDrE~~~~y~l~v~a~ 76 (203)
T 3ppe_A 61 LDREKKAEYELTAHII 76 (203)
T ss_dssp CCTTTCCEEEEEEEEE
T ss_pred ccccccceEEEEEEEE
Confidence 9999999999999984
No 43
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.34 E-value=2.3e-12 Score=91.15 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=61.5
Q ss_pred EEEEeCCCCCC--cEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEccC
Q psy9047 17 IVRVSDLTPVG--STIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94 (110)
Q Consensus 17 ~~~v~En~~~g--s~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~~~ 94 (110)
.++|+||.++| ..+++ +.|.|+|. .++|+|...... .+..++|.|| +.+|.|++.++
T Consensus 7 ~~~V~En~~~g~~~~v~~-v~a~D~d~----~i~Y~i~~~~~~---------------~~~~~~F~Id-~~tG~i~~~~~ 65 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGK-VVDSDRPE----GSKFRLTGKGVD---------------QDPKGTFRIN-ENTGSVSVTRT 65 (218)
T ss_dssp CEEEETTCCSSCCEEEEE-CBCTTCCT----TCEEEEEEBTTT---------------BSSTTSEEEC-TTTCEEEECSC
T ss_pred cEEEecCCCCCCCEEEEE-EEecCCCc----eEEEEEEcCCCC---------------CCCCCeEEEe-CCceEEEECCc
Confidence 68999999999 77888 99998875 689999754221 0235899999 99999999999
Q ss_pred CCcCCCCEEEEEEEEC
Q psy9047 95 LDFEKTQRYLVTIVAS 110 (110)
Q Consensus 95 LD~E~~~~y~l~V~A~ 110 (110)
||||....|.|.|.|+
T Consensus 66 LDrE~~~~y~l~v~a~ 81 (218)
T 3k5r_A 66 LDRETIATYQLYVETT 81 (218)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred CCcccCCEEEEEEEEE
Confidence 9999999999999984
No 44
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=98.86 E-value=6.6e-09 Score=74.88 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCceeEEEc-
Q psy9047 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVN- 92 (110)
Q Consensus 14 ~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG~i~~~- 92 (110)
+.|.+.|+|+.++|+.+...+.+.|.|.+.|+.+.|+|.... ..+|.|+ +.+|.+.+.
T Consensus 20 P~~~vsV~E~sp~GTvv~~~~~~~~~d~~~n~~i~ysl~~~~--------------------~~~f~id-~~tg~~~l~~ 78 (242)
T 4apx_B 20 PATIVAIDEESRNGTILVDNMLIKGTAGGPDPTIELSLKDNV--------------------DYWVLLD-PVKQMLFLNS 78 (242)
T ss_dssp SSEEEEEETTCCTTCEEESCCCBSSCBSSSSCSEEEEEESCG--------------------GGCEEEE-TTTTEEEECC
T ss_pred CeEEEEeeCCCCCCCEEEEEEEecCCCCCCCCEEEEEEecCC--------------------CceEEEC-CCCCEEEEEe
Confidence 467899999999999987624455667789999999997532 4689999 999999874
Q ss_pred --cCCCcCCCCEEEEEEE
Q psy9047 93 --RSLDFEKTQRYLVTIV 108 (110)
Q Consensus 93 --~~LD~E~~~~y~l~V~ 108 (110)
+.||||....|.+.+.
T Consensus 79 t~~~LDrE~~~~~~~~~~ 96 (242)
T 4apx_B 79 TGRVLDRDPPMNIHSIVV 96 (242)
T ss_dssp TTSCCCCSTTTCCCEEEE
T ss_pred cCCceeccCCCceEEEEE
Confidence 7899999877765544
No 45
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=86.73 E-value=3.2 Score=27.85 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=48.0
Q ss_pred cCccCCCcEEEEEeCCCCCCcEEEeeeEEeeCCCCCCceEEEEEccCCCCCCCccCCcccceeeecCCcceEEEcCCCce
Q psy9047 8 SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQG 87 (110)
Q Consensus 8 ~~~~~~~~y~~~v~En~~~gs~v~~~v~A~D~D~g~n~~i~Ysi~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Id~~~tG 87 (110)
..-|.+..|...++-+...|..+++ |.=.|-. .+..+.|.-.+ ...|.|+ ..|
T Consensus 33 ~pGF~~~~~~~~vp~~l~~g~~lgk-V~F~dC~--g~~~~~~~ssD----------------------p~dFkV~--~DG 85 (159)
T 1op4_A 33 KTGFPEDVYSAVLPKDVHEGQPLLN-VKFSNCN--RKRKVQYESSE----------------------PADFKVD--EDG 85 (159)
T ss_dssp CCBCCSCEEEECCCCSSCSSCCEEE-CCCBCCS--SCCCEEEECCC----------------------SSEEEEE--TTT
T ss_pred cCCcCcceeEEeccccccCCceece-eecccCC--CCCceeEEcCC----------------------CCCeEEe--CCC
Confidence 3568899998888889999999988 8777663 46667775542 1269998 689
Q ss_pred eEEEccCCCcC
Q psy9047 88 QVTVNRSLDFE 98 (110)
Q Consensus 88 ~i~~~~~LD~E 98 (110)
.|.+.+.+..-
T Consensus 86 tVya~r~v~L~ 96 (159)
T 1op4_A 86 TVYAVRSFPLT 96 (159)
T ss_dssp EEEEESCCSCS
T ss_pred cEEEecceeec
Confidence 99998875443
Done!