RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9047
(110 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 58.9 bits (143), Expect = 9e-13
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V V + P G+ + + A D D+G NG V Y IV +
Sbjct: 4 VSVPENAPPGTVVLT-VSATDPDSGENGEVTYSIVSGNEDG------------------- 43
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
FSI+ P G++T + LD E+ Y +T+ A+
Sbjct: 44 LFSID-PSTGEITTAKPLDREEQSSYTLTVTAT 75
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 48.1 bits (115), Expect = 8e-09
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 20/76 (26%)
Query: 35 RAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRS 94
A DAD+G NG V Y I+ D FSI+ P G++T +
Sbjct: 1 SATDADSGENGKVTYSILSGNDDG-------------------LFSID-PETGEITTTKP 40
Query: 95 LDFEKTQRYLVTIVAS 110
LD E+ Y +T+ A+
Sbjct: 41 LDREEQPEYTLTVEAT 56
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 41.9 bits (99), Expect = 3e-06
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V + PVG+ + + A DAD G NG + Y I+
Sbjct: 3 ASVPENAPVGTEVL-TVTATDADLGPNGRIFYSILGGGPGGW------------------ 43
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I+ P G ++ + LD E Y +T++A+
Sbjct: 44 -FRID-PDTGDLSTTKPLDRESIGEYELTVLAT 74
>gnl|CDD|235168 PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.
Length = 410
Score = 28.0 bits (63), Expect = 0.97
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 49 YFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIV 108
+F + + K++ + GY Y +LP Q + SL F K + + IV
Sbjct: 7 FFKQSDIKTISSYFERINKEKESGEIGY-Y---HLPDQSTSLIEESLKFVKDKESIKNIV 62
>gnl|CDD|205161 pfam12956, DUF3845, Domain of Unknown Function with PDB structure.
Member PDB:3GF6 has statistically significant similarity
to TNF-like jelly roll fold may indicate an
immunomodulatory function or a bioadhesion role.
Length = 244
Score = 27.7 bits (61), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 54 SQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLD 96
S+D+ + +GVGK ++T+ GY N P + QV V S D
Sbjct: 86 SKDQEVADFNGVGKSKLTMSLGYK--DGNYPVESQVPVYTSQD 126
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 27.4 bits (61), Expect = 1.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 35 RAVDADAGVN-GLVEYFIVPSQDKNIGTAD--GVGKDRV 70
+D DAGVN GL Y I+ + D + A VGKD++
Sbjct: 122 AGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQI 160
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase
inhibitor; Provisional.
Length = 538
Score = 26.0 bits (57), Expect = 4.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 48 EYFIVPSQDKNIG-TADGVGKDRVT----VVDGYSYFS 80
EY +VP KNI DG+ K +T VVDG++ F+
Sbjct: 267 EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFN 304
>gnl|CDD|239191 cd02790, MopB_CT_Formate-Dh_H, Formate dehydrogenase H
(Formate-Dh-H) catalyzes the reversible oxidation of
formate to CO2 with the release of a proton and two
electrons. It is a component of the anaerobic formate
hydrogen lyase complex. The E. coli formate
dehydrogenase H (Fdh-H) is a monomer composed of a
single polypeptide chain with a Mo active site region
and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H)
is of the conserved molybdopterin_binding C-terminal
(MopB_CT) region present in many, but not all, MopB
homologs.
Length = 116
Score = 24.5 bits (54), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 4 TVKVSNRKRTIPVIVRVSDLTPVGST 29
V+VS+R+ ++ V RV+D P G
Sbjct: 54 KVRVSSRRGSVEVRARVTDRVPEGVV 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.382
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,536,685
Number of extensions: 480650
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 19
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)