RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9047
(110 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 58.8 bits (143), Expect = 5e-12
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P VR+ + TPVG+ IF + A D D G G V Y P
Sbjct: 113 PYSVRIPENTPVGTPIFI-VNATDPDLGAGGSVLYSFQPPSP------------------ 153
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F+I+ +G VTV + LD+E TQ Y +T+ A+
Sbjct: 154 ---FFAID-SARGIVTVIQELDYEVTQAYQLTVNAT 185
Score = 48.0 bits (115), Expect = 4e-08
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
+ +S+ TPVGS++ + L A D D N + + + +
Sbjct: 14 DTYLLISEDTPVGSSVTQ-LLARDMD---NDPLVFGVSGE-------------------E 50
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+F++ P G V + + LD E + V S
Sbjct: 51 ASRFFAVE-PDTGVVWLRQPLDRETKSEFTVEFSVS 85
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 55.9 bits (136), Expect = 1e-11
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
+++ + G+ I + LRA D D GVNG +EY + +
Sbjct: 21 ADLAENSAPGTPILQ-LRAADLDVGVNGQIEYVFGAATES-----------------VRR 62
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
++ G ++V +D E+ + T++A
Sbjct: 63 LLRLD-ETSGWLSVLHRIDREEVNQLRFTVMAR 94
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 54.0 bits (131), Expect = 5e-11
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V + + PVG+++ + L A DAD G N + Y
Sbjct: 21 VHIPENAPVGTSVIQ-LHATDADIGSNAEIRYIFGAQVAPAT----------------KR 63
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F++N G +TV RSLD E+T + VT++AS
Sbjct: 64 LFALN-NTTGLITVQRSLDREETAIHKVTVLAS 95
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 53.1 bits (128), Expect = 9e-11
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P+++ + P + K + D G + V K
Sbjct: 7 PILIPENQRQPFPRDVGK-VVDSDRPEGSKFRLTGKGVDQDPKGT--------------- 50
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN + G V+V R+LD E Y + + +
Sbjct: 51 ----FRIN-ENTGSVSVTRTLDRETIATYQLYVETT 81
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 55.4 bits (134), Expect = 1e-10
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V P + +F L+A D D N + YFIV +
Sbjct: 120 AVVQLNAPPNTPVFT-LQARDPDTDHN--IHYFIVRDRTGGR------------------ 158
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F ++ G V + F+ Y++ + A
Sbjct: 159 -FEVD-ERSGVVRTRGTDLFQLDMEYVLYVKAE 189
Score = 48.5 bits (116), Expect = 4e-08
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 27/88 (30%)
Query: 24 TPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83
P+G++I + ++A+D+D+G N +EY + +F+++
Sbjct: 338 IPLGTSILR-VKAMDSDSGSNAEIEYLVSD-----------------------DHFAVD- 372
Query: 84 PHQGQVTVNRSLDFEKTQ-RYLVTIVAS 110
G + N+ LD + Y + A
Sbjct: 373 -SNGIIVNNKQLDADNNNAYYEFIVTAK 399
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 16/85 (18%)
Query: 19 RVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
RV+ I +AD G + + DK + +
Sbjct: 3 RVTRAVRPTKRI----EFTEADGDTEGKSVFQLEKETDKETFK-----------IRDDNP 47
Query: 79 FSINLPHQGQVTVNRSLDFEKTQRY 103
+ G V V + D+E+
Sbjct: 48 WVTV-ETNGAVRVKKKWDYEELGPE 71
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 51.9 bits (125), Expect = 5e-10
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 21/104 (20%)
Query: 10 RKR---TIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVG 66
+KR T PV +R + + I K + + D + Y G G
Sbjct: 8 QKRAWITAPVALREGEDLSKKNPIAK-IHS-DLAEERGLKITYKYT-----------GKG 54
Query: 67 KDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ F N G++ V LD E+T +L+T A
Sbjct: 55 ITE----PPFGIFVFN-KDTGELNVTSILDREETPFFLLTGYAL 93
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 50.8 bits (122), Expect = 7e-10
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
+ + + P + + + D G + V + K I
Sbjct: 6 SISIPENQRIPFPKIVGR-VVVSDRIPGSKIKLYGKGVDQEPKGI--------------- 49
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN + G+V+V ++LD E Y + + +
Sbjct: 50 ----FKIN-ENSGEVSVTKALDREAIPSYQLQVETT 80
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 50.5 bits (121), Expect = 1e-09
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 20/95 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P+ ++ P + + ++ G V Y I G G D
Sbjct: 10 PISCPENEKGPFPKNLV----QIKSNKDKEGKVFYSIT-----------GQGADT----P 50
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F I G + V LD E+ Y + A
Sbjct: 51 PVGVFIIE-RETGWLKVTEPLDRERIATYTLFSHA 84
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 49.6 bits (119), Expect = 2e-09
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 32 KNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTV 91
+ L + + N + Y + G G D+ F IN P GQ++V
Sbjct: 21 QELVRIRSGRDKNLSLRYSVT-----------GPGADQ----PPTGIFIIN-PISGQLSV 64
Query: 92 NRSLDFEKTQRYLVTIVA 109
+ LD E R+ + A
Sbjct: 65 TKPLDRELIARFHLRAHA 82
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 51.8 bits (124), Expect = 2e-09
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 22/93 (23%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
R+ + P G+ V Y ++ +
Sbjct: 146 FRIRENRPPGTFHQF-RLLPVQFLCPQISVAYRLLEGEGLP------------------- 185
Query: 78 YFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F P +V+ +LD E+ ++Y + V +
Sbjct: 186 -FRSA-PDSLEVSTRWALDREQREKYELVAVCT 216
Score = 41.1 bits (96), Expect = 2e-05
Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 18/95 (18%)
Query: 18 VRVSDLTPVGSTIFKNLRAV--DADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
++ G+ + + A+ + + + + + + +
Sbjct: 10 EKLYVDQAAGTPLLY-VHALRDAPEEVPSFRLGQHLYGTYRTRLHENN------------ 56
Query: 76 YSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ I G + + RSLD ++ V
Sbjct: 57 --WIRIQ-EDTGLLYLQRSLDHSSWEKLSVRNRGF 88
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 50.1 bits (120), Expect = 7e-09
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P+++ + P + K + D G + V K
Sbjct: 7 PILIPENQRQPFPRDVGK-VVDSDRPEGSKFRLTGKGVDQDPKGT--------------- 50
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN + G V+V R+LD E Y + + +
Sbjct: 51 ----FRIN-ENTGSVSVTRTLDRETIATYQLYVETT 81
Score = 41.6 bits (98), Expect = 8e-06
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 24/100 (24%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDAD--AGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
V + +P G+T+ + + A DAD A N L+ Y I
Sbjct: 115 GHVMEGSPTGTTVMR-MTAFDADDPATDNALLRYNIRQQTPDKPSP-------------- 159
Query: 76 YSYFSINLPHQGQVTV---NRSLDFEKTQ--RYLVTIVAS 110
+ F I+ P +G + LD E + +Y + I A
Sbjct: 160 -NMFYID-PEKGDIVTVVSPALLDRETLENPKYELIIEAQ 197
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 50.4 bits (121), Expect = 8e-09
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 23/96 (23%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYS 77
V + +G+ I ++A D D G N Y I+ DG +
Sbjct: 222 FSVPEDVVLGTAIG-RVKANDQDIGENAQSSYDIIDG-------------------DGTA 261
Query: 78 YFSINL---PHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I G + + + LDFE + Y + + A+
Sbjct: 262 LFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAA 297
Score = 41.5 bits (98), Expect = 1e-05
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
+ + + + + D D G + ++Y + + DG G
Sbjct: 4 WNQMFVLEEFSGPEPILVG-RLHTDLDPG-SKKIKYIL---------SGDGAG------- 45
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ F IN G + + LD E+ Y +T A
Sbjct: 46 ---TIFQIN-DITGDIHAIKRLDREEKAEYTLTAQAV 78
Score = 39.6 bits (93), Expect = 5e-05
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 27/100 (27%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVT 71
P V +++ +G+++ + A DAD G + + Y I+
Sbjct: 110 PYHATVPEMSILGTSVTN-VTATDADDPVYGNSAKLVYSIL------------------- 149
Query: 72 VVDGYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+G YFSI P + T ++D E + YLV I A
Sbjct: 150 --EGQPYFSIE-PETAIIKTALPNMDREAKEEYLVVIQAK 186
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 50.4 bits (121), Expect = 9e-09
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADA--GVNGLVEYFIVPSQDKNIGTADGVGKDRVTV 72
V + + G+ + + A+DAD +NG++ Y I+
Sbjct: 112 VWNGSVPEGSKPGTYVMT-VTAIDADDPNALNGMLRYRILSQAPST-------------- 156
Query: 73 VDGYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+ F+IN G + TV LD EK Q+Y + I A+
Sbjct: 157 -PSPNMFTIN-NETGDIITVAAGLDREKVQQYTLIIQAT 193
Score = 48.9 bits (117), Expect = 3e-08
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P I+R + G+ + L A D D + + Y + D
Sbjct: 342 PKIIRQEEGLHAGTMLTT-LTAQDPDRYMQQNIRYTKLS--------------------D 380
Query: 75 GYSYFSINLPHQGQVTVNRSLDFE----KTQRYLVTIVAS 110
++ I+ P GQ+T LD E K Y T +AS
Sbjct: 381 PANWLKID-PVNGQITTIAVLDRESPNVKNNIYNATFLAS 419
Score = 43.9 bits (104), Expect = 2e-06
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 32 KNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTV 91
+ L + +D N + Y + G G D+ F IN P GQ++V
Sbjct: 19 QELVRIRSDRDKNLSLRYSVT-----------GPGADQ----PPTGIFIIN-PISGQLSV 62
Query: 92 NRSLDFEKTQRYLVTIVA 109
+ LD E R+ + A
Sbjct: 63 TKPLDRELIARFHLRAHA 80
Score = 39.2 bits (92), Expect = 7e-05
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 25/92 (27%)
Query: 24 TPVGSTIFKNLRAVDADAGVNG--LVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSI 81
V + NL D D Y I D F+I
Sbjct: 235 NRVDVIVA-NLTVTDKDQPHTPAWNAAYRISGG-------------------DPTGRFAI 274
Query: 82 NLPHQ---GQVTVNRSLDFEKTQRYLVTIVAS 110
G VTV + +DFE + +++T+ A
Sbjct: 275 LTDPNSNDGLVTVVKPIDFETNRMFVLTVAAE 306
Score = 35.8 bits (83), Expect = 0.001
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 30/112 (26%)
Query: 13 TIPVIVRVSD-------LTPVGSTIFKN-------LRAVDADAGVNGLVEYFIVPSQDKN 58
T + + + D + P + + + A+D D N F +P
Sbjct: 429 TGTLQIYLLDINDNAPQVLPQEAETCETPEPNSINITALDYDIDPNAGPFAFDLPLSPVT 488
Query: 59 IGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
I ++IN + +N + F + Y V I+ +
Sbjct: 489 IK----------------RNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIIT 524
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 49.2 bits (118), Expect = 1e-08
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 26/96 (27%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDAD---AGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V +++ +G+++ K + A DAD + V Y I+ +
Sbjct: 111 GSVPEMSRLGTSVTK-VTAEDADDPTVAGHATVTYQIIKGNE------------------ 151
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
YF+++ T LD E Y + + A
Sbjct: 152 ---YFTVD-DSGVIFTARADLDRESQSAYEIIVKAK 183
Score = 39.2 bits (92), Expect = 5e-05
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 25/96 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
+ +R +P+ + K + + G N Y I +
Sbjct: 6 RMHIREEIDSPLPHHVGK----LTSSVG-NKNAMYII---------EGESAN-------- 43
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ F + + G + LD EK Y +T
Sbjct: 44 --TIFKVQ-GYDGDIYAFERLDREKKAEYELTAHII 76
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 48.8 bits (117), Expect = 3e-08
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 26/100 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V VS+ G I L A D D + YFI
Sbjct: 342 VSRVDVSEDLSRGEKIIS-LVAQDPDKQQIQKLSYFIGNDPA------------------ 382
Query: 75 GYSYFSINLPHQGQVTVNRSLDFE----KTQRYLVTIVAS 110
+ ++N G VT N +LD E K Y V ++ +
Sbjct: 383 --RWLTVN-KDNGIVTGNGNLDRESEYVKNNTYTVIMLVT 419
Score = 45.8 bits (109), Expect = 4e-07
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P+ V ++ P + + + ++ V Y I G G D
Sbjct: 12 PIKVSENERGPFPKRLVQ----IKSNKDRFNKVYYSIT-----------GQGADN----P 52
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F I G + V R LD E+ +Y+++ A
Sbjct: 53 PQGVFRIE-WETGWMLVTRPLDREEYDKYVLSSHAV 87
Score = 45.4 bits (108), Expect = 5e-07
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDAD---AGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V + G+ + + A D D +NG++ Y I+ +
Sbjct: 121 GSVREGVQPGTQVMA-VSATDEDDNIDSLNGVLSYSILKQDPEE---------------P 164
Query: 75 GYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+ F+IN G + + LD EK Y +T+ A+
Sbjct: 165 IPNLFTIN-RETGVISLIGTGLDREKFPEYTLTVQAT 200
Score = 33.4 bits (77), Expect = 0.007
Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLV-EYFIVPSQDKNIGTADGVGKDRVTVV 73
PV + + L DAD N + + D
Sbjct: 444 PVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLT--------------- 488
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ L +G + K Y + ++ S
Sbjct: 489 -----WKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 520
Score = 33.4 bits (77), Expect = 0.009
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 24/90 (26%)
Query: 25 PVGSTIFKNLRAVDADA-GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83
+G + L D D G + + + +F+I
Sbjct: 240 EIGFEVQ-RLSVTDLDMPGTPAWQAVYKIRVNEGG-------------------FFNITT 279
Query: 84 ---PHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+QG +T + LDFE ++Y++ I
Sbjct: 280 DPESNQGILTTAKGLDFELRKQYVLQITVE 309
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 48.9 bits (117), Expect = 4e-08
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 27/101 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V V + VG I A + D ++ + Y I D
Sbjct: 336 ERRVEVPEDFGVGQEITS-YTAREPDTFMDQKITYRIWR--------------------D 374
Query: 75 GYSYFSINLPHQGQVTVNRSLDFE-----KTQRYLVTIVAS 110
++ IN P G + +D E K Y+ I+A+
Sbjct: 375 TANWLEIN-PETGAIFTRAEMDREDAEHVKNSTYVALIIAT 414
Score = 48.1 bits (115), Expect = 6e-08
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGV---NGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V++ G+++ K + A DAD V N + Y IV +
Sbjct: 115 GSVAEGAVPGTSVMK-VSATDADDDVNTYNAAIAYTIVSQDPELPHK------------- 160
Query: 75 GYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+ F++N G + + LD E Y + + A+
Sbjct: 161 --NMFTVN-RDTGVISVLTSGLDRESYPTYTLVVQAA 194
Score = 43.1 bits (102), Expect = 3e-06
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 32 KNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTV 91
KNL + ++ V Y I G G D+ F I G + V
Sbjct: 19 KNLVQIKSNRDKETKVFYSIT-----------GQGADK----PPVGVFIIE-RETGWLKV 62
Query: 92 NRSLDFEKTQRYLVTIVAS 110
+ LD E +Y++ A
Sbjct: 63 TQPLDREAIAKYILYSHAV 81
Score = 35.8 bits (83), Expect = 0.001
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 26/91 (28%)
Query: 25 PVGSTIFKNLRAVDADAGVNG--LVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSIN 82
V + I L+ D DA Y +V D F +
Sbjct: 234 EVNARIA-TLKVTDDDAPNTPAWKAVYTVVN--------------------DPDQQFVVV 272
Query: 83 LP---HQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ G + + LDFE Q+Y++ +
Sbjct: 273 TDPTTNDGILKTAKGLDFEAKQQYILHVRVE 303
Score = 33.8 bits (78), Expect = 0.006
Identities = 9/111 (8%), Positives = 24/111 (21%), Gaps = 31/111 (27%)
Query: 13 TIPVIVRVSD-------LTPVGSTIFKN------LRAVDADAGVNGLVEYFIVPSQDKNI 59
T +++ + D P + + +D D N +
Sbjct: 424 TGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITILDPDLPPNTSPFTAELTHGASVN 483
Query: 60 GTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
T N + + + + Y + + +
Sbjct: 484 WT-----------------IEYN-DAAQESLILQPRKDLEIGEYKIHLKLA 516
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 48.5 bits (116), Expect = 4e-08
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 23/100 (23%)
Query: 11 KRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRV 70
R +P+ V P + +F L+A D D N + YFIV
Sbjct: 108 NRPLPMQAVVQLNAPPNTPVFT-LQARDPDTDHN--IHYFIVRD---------------- 148
Query: 71 TVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F ++ G V + F+ Y++ + A
Sbjct: 149 ---RTGGRFEVD-ERSGVVRTRGTDLFQLDMEYVLYVKAE 184
Score = 43.1 bits (102), Expect = 3e-06
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 26/90 (28%)
Query: 24 TPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83
S I ++A + + Y + F+I
Sbjct: 227 QKKDSDIIS-IKAKSFA---DREIRYTLKAQGQGA------------------GTFNIG- 263
Query: 84 PHQGQVTVNRSLDFEKTQR---YLVTIVAS 110
P G V + + LDFE ++ Y + + A+
Sbjct: 264 PTSGIVKLAKELDFEDLRQPHVYSLIVTAT 293
Score = 39.3 bits (92), Expect = 6e-05
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 34 LRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93
+ +AD G + + DK + + + G V V +
Sbjct: 9 IEFTEADGDTEGKSVFQLEKETDKETFK-----------IRDDNPWVTV-ETNGAVRVKK 56
Query: 94 SLDFEKTQRYLVT 106
D+E+
Sbjct: 57 KWDYEELGPEKTI 69
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 48.3 bits (115), Expect = 6e-08
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 26/100 (26%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V VS+ G I L A D D + YFI
Sbjct: 491 VSRVDVSEDLSRGEKIIS-LVAQDPDKQQIQKLSYFIGNDPA------------------ 531
Query: 75 GYSYFSINLPHQGQVTVNRSLDFE----KTQRYLVTIVAS 110
+ ++N G VT N +LD E K Y V ++ +
Sbjct: 532 --RWLTVN-KDNGIVTGNGNLDRESEYVKNNTYTVIMLVT 568
Score = 46.8 bits (111), Expect = 2e-07
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V + G+ + + A D D +NG++ Y I+ +
Sbjct: 270 GSVREGVQPGTQVMA-VSATDEDDNIDSLNGVLSYSILKQDPEE---------------P 313
Query: 75 GYSYFSINLPHQGQVTVNRS-LDFEKTQRYLVTIVAS 110
+ F+IN G +++ + LD EK Y +T+ A+
Sbjct: 314 IPNLFTIN-RETGVISLIGTGLDREKFPEYTLTVQAT 349
Score = 46.4 bits (110), Expect = 2e-07
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
P+ V ++ P + + + ++ V Y I G G D
Sbjct: 160 PPIKVSENERGPFPKRLVQ----IKSNKDRFNKVYYSIT-----------GQGADN---- 200
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F I G + V R LD E+ +Y+++ A
Sbjct: 201 PPQGVFRIE-WETGWMLVTRPLDREEYDKYVLSSHA 235
Score = 36.8 bits (85), Expect = 5e-04
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 24/90 (26%)
Query: 25 PVGSTIFKNLRAVDADA-GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83
+G + L D D G + + + +F+I
Sbjct: 389 EIGFEVQ-RLSVTDLDMPGTPAWQAVYKIRVNEGG-------------------FFNITT 428
Query: 84 PHQ---GQVTVNRSLDFEKTQRYLVTIVAS 110
+ G +T + LDFE ++Y++ I
Sbjct: 429 DPESNQGILTTAKGLDFELRKQYVLQITVE 458
Score = 33.7 bits (77), Expect = 0.007
Identities = 13/97 (13%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGL-VEYFIVPSQDKNIGTADGVGKDRVTVV 73
PV + + L DAD N + + D
Sbjct: 593 PVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLT--------------- 637
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
+ L +G + K Y + ++ S
Sbjct: 638 -----WKAELDSKGTSMLLSPTQQLKKGDYSIYVLLS 669
Score = 27.9 bits (62), Expect = 0.72
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 28/87 (32%)
Query: 24 TPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINL 83
G + + D +GL + G S F +
Sbjct: 51 LERGRKLG-KVNFSDCTTRKHGLYDV-------------------------GDSRFRVL- 83
Query: 84 PHQGQVTVNRSLDFEKTQRYLVTIVAS 110
G V V R + K ++ ++ +
Sbjct: 84 -PDGTVLVKRHVKLHKDTKFTISTWDA 109
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 47.4 bits (113), Expect = 7e-08
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 27 GSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQ 86
G + L + +D N + Y + G G D+ F IN P
Sbjct: 15 GPFPQE-LVRIRSDRDKNLSLRYSVT-----------GPGADQ----PPTGIFIIN-PIS 57
Query: 87 GQVTVNRSLDFEKTQRYLVTIVAS 110
GQ++V + LD E R+ + A
Sbjct: 58 GQLSVTKPLDRELIARFHLRAHAV 81
Score = 47.4 bits (113), Expect = 7e-08
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDAD--AGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDG 75
V + + G+ + + A+DAD +NG++ Y I+
Sbjct: 115 GSVPEGSKPGTYVMT-VTAIDADDPNALNGMLRYRILSQAPST---------------PS 158
Query: 76 YSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+ F+IN G + TV LD EK Q+Y + I A+
Sbjct: 159 PNMFTIN-NETGDIITVAAGLDREKVQQYTLIIQAT 193
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 45.5 bits (108), Expect = 8e-08
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 15 PVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
P+++ + P ++ K + + G + V K I
Sbjct: 6 PILIPENQRPPFPRSVGK-VIRSEGTEGAKFRLSGKGVDQDPKGI--------------- 49
Query: 75 GYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
F IN G V+V R LD E Y + + +
Sbjct: 50 ----FRIN-EISGDVSVTRPLDREAIANYELEVEVT 80
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 46.6 bits (111), Expect = 1e-07
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 21/97 (21%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADAGV---NGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V++ G+++ K + A DAD V N + Y IV +
Sbjct: 115 GSVAEGAVPGTSVMK-VSATDADDDVNTYNAAIAYTIVSQDPEL---------------P 158
Query: 75 GYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
+ F++N G + + LD E Y + + A+
Sbjct: 159 HKNMFTVN-RDTGVISVLTSGLDRESYPTYTLVVQAA 194
Score = 45.8 bits (109), Expect = 2e-07
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 16/77 (20%)
Query: 34 LRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93
L + ++ V Y I G G D+ F I G + V +
Sbjct: 21 LVQIKSNRDKETKVFYSIT-----------GQGADK----PPVGVFIIE-RETGWLKVTQ 64
Query: 94 SLDFEKTQRYLVTIVAS 110
LD E +Y++ A
Sbjct: 65 PLDREAIAKYILYSHAV 81
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 45.0 bits (107), Expect = 6e-07
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 27/97 (27%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V + + VG+++ + + A DAD G + + Y I+ Q
Sbjct: 114 ANVPERSNVGTSVIQ-VTASDADDPTYGNSAKLVYSILEGQP------------------ 154
Query: 75 GYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
YFS+ G + T ++D E + Y V I A
Sbjct: 155 ---YFSVE-AQTGIIRTALPNMDREAKEEYHVVIQAK 187
Score = 40.7 bits (96), Expect = 2e-05
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 14 IPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVV 73
+ + T + D D+G +G ++Y + A +
Sbjct: 5 WNQFFVIEEYTGPDPVLVG-RLHSDIDSG-DGNIKYILSG------EGAGTI-------- 48
Query: 74 DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F I+ G + ++LD E+ +Y + A
Sbjct: 49 -----FVID-DKSGNIHATKTLDREERAQYTLMAQA 78
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 44.6 bits (106), Expect = 7e-07
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 27/97 (27%)
Query: 18 VRVSDLTPVGSTIFKNLRAVDADA---GVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVD 74
V ++ VG+ + + + A DAD G + V Y I+ Q
Sbjct: 113 ATVPEMADVGTFVVQ-VTATDADDPTYGNSAKVVYSILQGQP------------------ 153
Query: 75 GYSYFSINLPHQGQV-TVNRSLDFEKTQRYLVTIVAS 110
YFS+ G + T ++D E ++Y V I A
Sbjct: 154 ---YFSVE-SETGIIKTALLNMDRENREQYQVVIQAK 186
Score = 40.0 bits (94), Expect = 4e-05
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 22/97 (22%)
Query: 13 TIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTV 72
+ + T + D D G +G ++Y + A +
Sbjct: 3 MANQFFLLEEYTGSD-YQYVGKLHSDQDRG-DGSLKYILSG------DGAGDL------- 47
Query: 73 VDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVA 109
F IN + G + + LD E+ Y++ A
Sbjct: 48 ------FIIN-ENTGDIQATKRLDREEKPVYILRAQA 77
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 38.9 bits (91), Expect = 2e-05
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 21/86 (24%)
Query: 25 PVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLP 84
++ D D G +G ++Y + + +G G F+I+
Sbjct: 15 TGTDPLYVGKLHSDMDRG-DGSIKYIL---------SGEGAG----------IVFTID-D 53
Query: 85 HQGQVTVNRSLDFEKTQRYLVTIVAS 110
G + + LD E+ +Y + A
Sbjct: 54 TTGDIHAIQRLDREERSQYTLRAQAL 79
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 36.6 bits (85), Expect = 2e-04
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 36 AVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSL 95
D D G + ++Y + + DG G + F IN G + + L
Sbjct: 25 HTDLDPG-SKKIKYIL---------SGDGAG----------TIFQIN-DITGDIHAIKRL 63
Query: 96 DFEKTQRYLVTIVA 109
D E+ Y +T A
Sbjct: 64 DREEKAEYTLTAQA 77
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus
mutans}
Length = 218
Score = 28.9 bits (64), Expect = 0.30
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 39 ADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFE 98
D G + L++ + D IG D V + + + + P + T D E
Sbjct: 25 IDKGSSFLLKNQLPL--DLAIGDFDSVSAEEFKQIKAKAKKLVMAPAEKNDT-----DTE 77
Query: 99 KTQRYL 104
+ +
Sbjct: 78 LALKTI 83
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase,
thiamine pyrophosphokinase, NESG, LPR114, structural
genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Length = 227
Score = 28.6 bits (63), Expect = 0.36
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 39 ADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFE 98
AD G LV+ I P +G D + + V +I + T D +
Sbjct: 30 ADRGALRLVKRGIQP--VMVVGDFDSIDAAELQTVKDALVGAIVVKPDQDHT-----DTQ 82
Query: 99 KTQRYL 104
+ +
Sbjct: 83 LAIKSI 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.90
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 18/66 (27%)
Query: 46 LVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSI-----NLPHQGQVTVNRS--LDFE 98
+V+++ +P + D + + D Y Y I N+ H ++T+ R LDF
Sbjct: 449 IVDHYNIPKTFDS----DDLIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF- 500
Query: 99 KTQRYL 104
R+L
Sbjct: 501 ---RFL 503
>3gf6_A Uncharacterized bacterial lipoprotein; all-beta fold, structural
genomics, joint center for structu genomics, JCSG; HET:
MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Length = 224
Score = 27.0 bits (59), Expect = 1.2
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 55 QDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTI 107
+D+N+ +GVGK ++T+ GY N P + QV + S D T +Y V +
Sbjct: 68 KDQNVADFNGVGKSKLTMSLGYK--DGNYPSESQVPIYTSQDV--TAKYAVKL 116
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics,
PSI-2, protein structure initiative, no structural
genomics consortium; HET: TPP; 2.79A {Enterococcus
faecalis}
Length = 222
Score = 24.7 bits (53), Expect = 7.9
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 39 ADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNRSLDFE 98
D G L+E + +G D + ++ V + I P + T D +
Sbjct: 29 IDRGCLHLLEADLPL--QLAVGDFDSLSREEYHFVQETTETLIQAPAEKDDT-----DTQ 81
Query: 99 KTQRYL 104
+
Sbjct: 82 LALQEA 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.382
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,698,596
Number of extensions: 95965
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 66
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)