RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9047
         (110 letters)



>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 104

 Score = 31.2 bits (70), Expect = 0.009
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 20/98 (20%)

Query: 13  TIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTV 72
             P+    ++  P    +      + ++    G V Y I                     
Sbjct: 7   IPPISCPENEKGPFPKNLV----QIKSNKDKEGKVFYSITGQGADT-------------- 48

Query: 73  VDGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
                 F I     G + V   LD E+   Y +   A 
Sbjct: 49  -PPVGVFIIE-RETGWLKVTEPLDRERIATYTLFSHAV 84


>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 100

 Score = 29.7 bits (66), Expect = 0.030
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 16/77 (20%)

Query: 34  LRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93
           L  + ++      V Y I      N                    F I     G + V R
Sbjct: 21  LVQIKSNKDRFNKVYYSITGQGADNPPQ---------------GVFRIE-WETGWMLVTR 64

Query: 94  SLDFEKTQRYLVTIVAS 110
            LD E+  +Y+++  A 
Sbjct: 65  PLDREEYDKYVLSSHAV 81


>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 114

 Score = 25.8 bits (55), Expect = 0.89
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 74  DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
              + F+IN      +TV   LD EK Q+Y + I A+
Sbjct: 56  PSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 92


>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 102

 Score = 24.4 bits (52), Expect = 2.2
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 16/77 (20%)

Query: 34  LRAVDADAGVNGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSYFSINLPHQGQVTVNR 93
           L  + +    N  + Y +                           F IN P  GQ++V +
Sbjct: 23  LVRIRSGRDKNLSLRYSVTGPGADQ---------------PPTGIFIIN-PISGQLSVTK 66

Query: 94  SLDFEKTQRYLVTIVAS 110
            LD E   R+ +   A 
Sbjct: 67  PLDRELIARFHLRAHAV 83


>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 24.6 bits (52), Expect = 2.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 74  DGYSYFSINLPHQGQVTVNRSLDFEKTQRYLVTIVAS 110
              + F+IN        +   LD EK   Y +T+ A+
Sbjct: 58  PIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQAT 94


>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2)
          binding protein LuxP {Vibrio harveyi [TaxId: 669]}
          Length = 338

 Score = 23.8 bits (50), Expect = 6.4
 Identities = 4/49 (8%), Positives = 11/49 (22%)

Query: 8  SNRKRTIPVIVRVSDLTPVGSTIFKNLRAVDADAGVNGLVEYFIVPSQD 56
          + R   I V+     ++        +         +N  +         
Sbjct: 37 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNA 85


>d1j0ga_ d.15.1.6 (A:) Hypothetical protein 1810045k17 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 92

 Score = 22.9 bits (49), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 48 EYFIVPSQDKNIGTADGVG 66
          E F VP+    I T DG+G
Sbjct: 45 EEFKVPAATSAIITNDGIG 63


>d1te1b_ b.29.1.11 (B:) Xylanase II {Penicillium funiculosum [TaxId:
           28572]}
          Length = 190

 Score = 23.5 bits (51), Expect = 7.4
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 44  NGLVEYFIVPSQDKNIGTADGVGKDRVTVVDGYSY 78
           + LVEY+I+ S      ++      +VT  DG +Y
Sbjct: 82  DPLVEYYILESYGTYNPSSGLTSLGQVT-SDGGTY 115


>d1xyna_ b.29.1.11 (A:) Xylanase II {Trichoderma reesei, xynI
           [TaxId: 51453]}
          Length = 178

 Score = 23.1 bits (50), Expect = 8.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 44  NGLVEYFIVPSQDKNIGTADGVGKDRVTV-VDGYSY 78
           N LVEY+I+    ++       G  + TV  DG +Y
Sbjct: 71  NPLVEYYIM----EDNHNYPAQGTVKGTVTSDGATY 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,802
Number of extensions: 16903
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 15
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)