Query psy9049
Match_columns 64
No_of_seqs 52 out of 54
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:40:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lml_A Leishmanolysin; metallo 97.4 3.2E-05 1.1E-09 58.5 0.7 40 3-42 47-86 (478)
2 1lml_A Leishmanolysin; metallo 89.4 0.086 3E-06 39.8 0.6 33 32-64 54-86 (478)
3 4gcn_A Protein STI-1; structur 59.0 6.1 0.00021 22.5 2.1 46 11-56 17-74 (127)
4 1zu2_A Mitochondrial import re 46.1 14 0.00048 24.0 2.5 41 17-57 61-124 (158)
5 3ff5_A PEX14P, peroxisomal bio 42.3 17 0.00058 20.5 2.1 33 13-50 8-40 (54)
6 3bee_A Putative YFRE protein; 41.8 13 0.00045 21.1 1.7 20 14-33 55-74 (93)
7 2l6j_A TPR repeat-containing p 36.4 25 0.00085 18.1 2.1 44 13-56 15-70 (111)
8 4gco_A Protein STI-1; structur 34.5 40 0.0014 19.1 3.0 46 11-56 22-79 (126)
9 3rkv_A Putative peptidylprolyl 32.8 50 0.0017 18.7 3.2 21 11-31 20-40 (162)
10 2zd7_A VPS75, vacuolar protein 28.2 33 0.0011 23.9 2.2 24 6-29 197-220 (264)
11 2w84_A Peroxisomal membrane pr 27.6 18 0.00063 21.4 0.7 33 13-50 13-45 (70)
12 1qqe_A Vesicular transport pro 27.5 89 0.003 19.9 4.1 33 19-53 34-66 (292)
13 3vtx_A MAMA; tetratricopeptide 26.7 41 0.0014 19.2 2.1 41 16-56 121-173 (184)
14 3upv_A Heat shock protein STI1 26.3 70 0.0024 17.1 3.0 45 12-56 14-70 (126)
15 4g1t_A Interferon-induced prot 24.8 87 0.003 20.6 3.7 39 18-56 110-170 (472)
16 3ma5_A Tetratricopeptide repea 23.2 63 0.0021 17.2 2.4 42 14-55 19-72 (100)
17 2ayu_A Nucleosome assembly pro 22.8 35 0.0012 25.7 1.6 20 8-27 343-362 (417)
18 2ifu_A Gamma-SNAP; membrane fu 21.8 1.2E+02 0.0041 19.4 3.9 13 19-31 53-65 (307)
19 3ulq_A Response regulator aspa 21.3 1.3E+02 0.0045 19.5 4.0 17 18-34 159-175 (383)
20 2kck_A TPR repeat; tetratricop 20.5 63 0.0021 16.1 1.9 40 16-55 20-71 (112)
21 3kyp_A Pfnaps, nucleosome asse 20.0 43 0.0015 22.2 1.4 17 9-25 172-188 (193)
No 1
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3
Probab=97.39 E-value=3.2e-05 Score=58.48 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=38.0
Q ss_pred ccchHHHHHHHhhcchhhHHHHHHHHHhhhhhcccccchh
Q psy9049 3 VRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKNTVLPE 42 (64)
Q Consensus 3 ~~l~~ek~~lv~~~llPeav~y~e~~l~VR~~v~~iLLpR 42 (64)
|-|++||+++++++++|+|+.+|++.|+||++.++|.+++
T Consensus 47 DiLT~~k~~~l~~tllp~av~~~~~~L~V~p~~~~i~v~~ 86 (478)
T 1lml_A 47 DILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD 86 (478)
T ss_dssp GCCCHHHHHHHHHTHHHHHHHHHHTTEEECCEESEECCCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhcccccCCCeEecC
Confidence 5699999999999999999999999999999999999986
No 2
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3
Probab=89.42 E-value=0.086 Score=39.80 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=29.7
Q ss_pred hhhcccccchhhHHHHHHHHhhhhccceeeecC
Q psy9049 32 RKTEKNTVLPEAVHFWEQALMVRKTEKVIRLNR 64 (64)
Q Consensus 32 R~~v~~iLLpRac~y~~~~~~VR~~~~~ilL~R 64 (64)
+......+||.|+.+|.+.+.||+..+||.+++
T Consensus 54 ~~~l~~tllp~av~~~~~~L~V~p~~~~i~v~~ 86 (478)
T 1lml_A 54 RDILVKHLIPQAVQLHTERLKVQQVQGKWKVTD 86 (478)
T ss_dssp HHHHHHTHHHHHHHHHHTTEEECCEESEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCeEecC
Confidence 777888899999999999999999999998763
No 3
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=59.00 E-value=6.1 Score=22.55 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHhhcchhhHHHHHHHHHhhhhhcccccc------------hhhHHHHHHHHhhhhc
Q psy9049 11 QLINNTVLPEAVHFWEQALMVRKTEKNTVL------------PEAVHFWEQALMVRKT 56 (64)
Q Consensus 11 ~lv~~~llPeav~y~e~~l~VR~~v~~iLL------------pRac~y~~~~~~VR~~ 56 (64)
.+.+..=+.+|+.+|++|+..-+....... ..|+.++++++...+.
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 345556678999999999987765444433 3445666666665543
No 4
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=46.13 E-value=14 Score=23.95 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHhhhhhcc-------c----------------ccchhhHHHHHHHHhhhhcc
Q psy9049 17 VLPEAVHFWEQALMVRKTEK-------N----------------TVLPEAVHFWEQALMVRKTE 57 (64)
Q Consensus 17 llPeav~y~e~~l~VR~~v~-------~----------------iLLpRac~y~~~~~~VR~~~ 57 (64)
++-+|+.++++|+..-+-.- + -.+.+|..+|++|+...|..
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 35689999999998775332 1 14677889999999887754
No 5
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=42.25 E-value=17 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=24.4
Q ss_pred HhhcchhhHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q psy9049 13 INNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQA 50 (64)
Q Consensus 13 v~~~llPeav~y~e~~l~VR~~v~~iLLpRac~y~~~~ 50 (64)
+.+.++-+|+.|+++ +-|.+--+.+.+.|++..
T Consensus 8 ~Re~li~~Av~FL~d-----p~V~~sp~~~K~~FL~sK 40 (54)
T 3ff5_A 8 FREPLIATAVKFLQN-----SRVRQSPLATRRAFLKKK 40 (54)
T ss_dssp HHHHHHHHHHHHHHC-----TTGGGSCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhCC-----hhhhcCCHHHHHHHHHHc
Confidence 456778889999886 556666677788888764
No 6
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.78 E-value=13 Score=21.08 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=14.3
Q ss_pred hhcchhhHHHHHHHHHhhhh
Q psy9049 14 NNTVLPEAVHFWEQALMVRK 33 (64)
Q Consensus 14 ~~~llPeav~y~e~~l~VR~ 33 (64)
...=..+|+.+|++++..-+
T Consensus 55 ~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 55 ISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HTTCHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 34446789999999886543
No 7
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=36.35 E-value=25 Score=18.10 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=26.2
Q ss_pred HhhcchhhHHHHHHHHHhhhhhccccc------------chhhHHHHHHHHhhhhc
Q psy9049 13 INNTVLPEAVHFWEQALMVRKTEKNTV------------LPEAVHFWEQALMVRKT 56 (64)
Q Consensus 13 v~~~llPeav~y~e~~l~VR~~v~~iL------------LpRac~y~~~~~~VR~~ 56 (64)
....=+.+|+.++++++...+...... ..+|..++++++...+.
T Consensus 15 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 344456788888888887765432222 34455666666655444
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=34.48 E-value=40 Score=19.07 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHhhcchhhHHHHHHHHHhhhhhcccccc------------hhhHHHHHHHHhhhhc
Q psy9049 11 QLINNTVLPEAVHFWEQALMVRKTEKNTVL------------PEAVHFWEQALMVRKT 56 (64)
Q Consensus 11 ~lv~~~llPeav~y~e~~l~VR~~v~~iLL------------pRac~y~~~~~~VR~~ 56 (64)
.+.+..=+.+|+.+|++++..-+.-..... .+|+.++++++...+.
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 355566678999999999877654433333 3444555555555443
No 9
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=32.83 E-value=50 Score=18.74 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.1
Q ss_pred HHHhhcchhhHHHHHHHHHhh
Q psy9049 11 QLINNTVLPEAVHFWEQALMV 31 (64)
Q Consensus 11 ~lv~~~llPeav~y~e~~l~V 31 (64)
.+.+..=+.+|+.+|++|+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 455666788999999999987
No 10
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=28.16 E-value=33 Score=23.90 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.0
Q ss_pred hHHHHHHHhhcchhhHHHHHHHHH
Q psy9049 6 DAEKFQLINNTVLPEAVHFWEQAL 29 (64)
Q Consensus 6 ~~ek~~lv~~~llPeav~y~e~~l 29 (64)
+-|--.+|++.|.|.|+.||-.+.
T Consensus 197 d~eig~~Ikd~I~P~al~yf~g~~ 220 (264)
T 2zd7_A 197 GDSLASLFSEEIYPFCVKYYAEAQ 220 (264)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhccCHHHHhcccc
Confidence 345668899999999999997554
No 11
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=27.57 E-value=18 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=24.0
Q ss_pred HhhcchhhHHHHHHHHHhhhhhcccccchhhHHHHHHH
Q psy9049 13 INNTVLPEAVHFWEQALMVRKTEKNTVLPEAVHFWEQA 50 (64)
Q Consensus 13 v~~~llPeav~y~e~~l~VR~~v~~iLLpRac~y~~~~ 50 (64)
+++.++-+|+.|+++ +-|..--+.+.+.|++..
T Consensus 13 ~Re~li~~Av~FLqd-----p~V~~sp~~~K~~FL~sK 45 (70)
T 2w84_A 13 PREPLIATAVKFLQN-----SRVRQSPLATRRAFLKKK 45 (70)
T ss_dssp CCHHHHHHHHHHHCS-----TTGGGSCHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCC-----hhhhhCCHHHHHHHHHHc
Confidence 467788899998876 455555567788888764
No 12
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=27.48 E-value=89 Score=19.87 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHhhhhhcccccchhhHHHHHHHHhh
Q psy9049 19 PEAVHFWEQALMVRKTEKNTVLPEAVHFWEQALMV 53 (64)
Q Consensus 19 Peav~y~e~~l~VR~~v~~iLLpRac~y~~~~~~V 53 (64)
.+|+.+++++..+-...+.. ++|..+|++++..
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~--~~A~~~~~~al~~ 66 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKEL--NLAGDSFLKAADY 66 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 34444444444333333322 4444444444444
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=26.68 E-value=41 Score=19.16 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=24.6
Q ss_pred cchhhHHHHHHHHHhhhhhcccc------------cchhhHHHHHHHHhhhhc
Q psy9049 16 TVLPEAVHFWEQALMVRKTEKNT------------VLPEAVHFWEQALMVRKT 56 (64)
Q Consensus 16 ~llPeav~y~e~~l~VR~~v~~i------------LLpRac~y~~~~~~VR~~ 56 (64)
.=+.+|+.++++++...+..... ...+|..+|++++...|.
T Consensus 121 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 34577788888777765433222 235566777777766553
No 14
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.33 E-value=70 Score=17.09 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHhhcchhhHHHHHHHHHhhhhhcccc------------cchhhHHHHHHHHhhhhc
Q psy9049 12 LINNTVLPEAVHFWEQALMVRKTEKNT------------VLPEAVHFWEQALMVRKT 56 (64)
Q Consensus 12 lv~~~llPeav~y~e~~l~VR~~v~~i------------LLpRac~y~~~~~~VR~~ 56 (64)
+....=+.+|+.++++++..-+..... ...+|..++++++...+.
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 444555677888888877765433222 234455556666655443
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=24.82 E-value=87 Score=20.57 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhhhhhccc----------------------ccchhhHHHHHHHHhhhhc
Q psy9049 18 LPEAVHFWEQALMVRKTEKN----------------------TVLPEAVHFWEQALMVRKT 56 (64)
Q Consensus 18 lPeav~y~e~~l~VR~~v~~----------------------iLLpRac~y~~~~~~VR~~ 56 (64)
+.+|+.|+++++...+.... .-..+|..+|++++...|.
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 57899999999877543211 1235788888888887664
No 16
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=23.23 E-value=63 Score=17.21 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=24.9
Q ss_pred hhcchhhHHHHHHHHHhhhhhcccc------------cchhhHHHHHHHHhhhh
Q psy9049 14 NNTVLPEAVHFWEQALMVRKTEKNT------------VLPEAVHFWEQALMVRK 55 (64)
Q Consensus 14 ~~~llPeav~y~e~~l~VR~~v~~i------------LLpRac~y~~~~~~VR~ 55 (64)
...=+.+|+.++++++..-+-.... ...+|+.+|++++..-+
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3344678888888888765433222 23455666666665433
No 17
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=22.78 E-value=35 Score=25.66 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.6
Q ss_pred HHHHHHhhcchhhHHHHHHH
Q psy9049 8 EKFQLINNTVLPEAVHFWEQ 27 (64)
Q Consensus 8 ek~~lv~~~llPeav~y~e~ 27 (64)
|--.+|++.|+|.||.||--
T Consensus 343 eIG~~Ikd~IiP~AV~yftG 362 (417)
T 2ayu_A 343 SIGEQLKDKLIPRAVDWFTG 362 (417)
T ss_dssp HHHHHHHHTTTTTHHHHHHS
T ss_pred HHHHHHHhhccccHHHHhcc
Confidence 34588999999999999863
No 18
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=21.79 E-value=1.2e+02 Score=19.40 Aligned_cols=13 Identities=15% Similarity=0.026 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHhh
Q psy9049 19 PEAVHFWEQALMV 31 (64)
Q Consensus 19 Peav~y~e~~l~V 31 (64)
.+|+.++++++..
T Consensus 53 ~~A~~~~~~al~~ 65 (307)
T 2ifu_A 53 EQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 19
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=21.28 E-value=1.3e+02 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHhhhhh
Q psy9049 18 LPEAVHFWEQALMVRKT 34 (64)
Q Consensus 18 lPeav~y~e~~l~VR~~ 34 (64)
..+|+.|+++|+..-+-
T Consensus 159 ~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45667777777665443
No 20
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=20.49 E-value=63 Score=16.10 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=22.0
Q ss_pred cchhhHHHHHHHHHhhhhhccc------------ccchhhHHHHHHHHhhhh
Q psy9049 16 TVLPEAVHFWEQALMVRKTEKN------------TVLPEAVHFWEQALMVRK 55 (64)
Q Consensus 16 ~llPeav~y~e~~l~VR~~v~~------------iLLpRac~y~~~~~~VR~ 55 (64)
.=+.+|+.++++++..-+.... -...+|..+|++++...+
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 3456777777777765432211 123555566666665543
No 21
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=20.01 E-value=43 Score=22.22 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHhhcchhhHHHHH
Q psy9049 9 KFQLINNTVLPEAVHFW 25 (64)
Q Consensus 9 k~~lv~~~llPeav~y~ 25 (64)
--.+|++.|.|-|+.|+
T Consensus 172 ige~ikd~i~P~~l~yy 188 (193)
T 3kyp_A 172 VGELIRREIWHNPLSYY 188 (193)
T ss_dssp TTHHHHTTTTTCHHHHH
T ss_pred HHHHHHhCeeeCHHHHh
Confidence 34789999999999997
Done!