RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9049
         (64 letters)



>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
           orientation, asymmetric CEL divisions; 2.10A {Drosophila
           melanogaster}
          Length = 411

 Score = 27.3 bits (61), Expect = 0.26
 Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 16/53 (30%)

Query: 20  EAVHFWEQALMVRKTEKNTV----------------LPEAVHFWEQALMVRKT 56
             V F++ A+     +  T+                  +A+ + +  L + K+
Sbjct: 66  AGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118


>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
          cell polarity, asymmetric CEL division, mitotic spindle
          orientation; 2.60A {Homo sapiens}
          Length = 406

 Score = 26.1 bits (58), Expect = 0.67
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 16/53 (30%)

Query: 20 EAVHFWEQALMVRKTEKNTV----------------LPEAVHFWEQALMVRKT 56
            V F+E A+ V   +  T+                  +A+ +    L + +T
Sbjct: 27 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79


>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
          protein-protein interaction, protein-binding, PR
          binding; 2.30A {Mus musculus}
          Length = 338

 Score = 25.7 bits (57), Expect = 0.90
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 16/53 (30%)

Query: 20 EAVHFWEQALMVRKTEKNTV----------------LPEAVHFWEQALMVRKT 56
            V F+E A+ V   +  T+                  +A+ +    L + +T
Sbjct: 23 AGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75


>4fbd_A Putative uncharacterized protein; conserved hypothetical,
           structural genomics, niaid, national institute of
           allergy and infectious diseases; 2.35A {Toxoplasma
           gondii}
          Length = 243

 Score = 24.3 bits (52), Expect = 3.3
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 8/36 (22%)

Query: 2   KVRLDAEKFQLINNTVLPEAVHFWEQALMVRKTEKN 37
            V LD E ++         +V +W+   +V   E +
Sbjct: 214 GVALDREAYK--------ASVAYWKTHAIVMDKESS 241


>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
           1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
           2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
           3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
           1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
          Length = 824

 Score = 23.2 bits (51), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 14  NNTVLPEAVHFWEQALMVRKTEKNTVLP 41
           N+TVLPEA+  W   L+        +LP
Sbjct: 365 NHTVLPEALERWPVHLLET------LLP 386


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 950,065
Number of extensions: 40197
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 10
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)